Thu, 15 Aug 2013

Package MultiLCIRT updated to version 2.5 with previous version 2.4 dated 2013-04-13

Title: Multidimensional latent class Item Response Theory models
Description: This package provides a flexible framework for the Item Response Theory analysis of dichotomous and ordinal polytomous outcomes under the assumption of multidimensionality and discreteness of the latent traits. The fitting algorithms allow for missing responses and for different item parameterizations and are based on the Expectation-Maximization paradigm. Individual covariates affecting the class weights may be included in the new version (since 2.1).
Author: Francesco Bartolucci, Silvia Bacci, Michela Gnaldi - University of Perugia (IT)
Maintainer: Francesco Bartolucci

Diff between MultiLCIRT versions 2.4 dated 2013-04-13 and 2.5 dated 2013-08-15

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Package futile.logger updated to version 1.3.5 with previous version 1.3.3 dated 2013-07-16

Title: A logging library for R
Description: Provides a simple yet powerful logging utility. Based loosely on log4j, futile.logger takes advantage of R idioms to make logging a convenient and easy to use replacement for cat and print statements.
Author: Brian Lee Yung Rowe
Maintainer: Brian Lee Yung Rowe

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Package DoseFinding updated to version 0.9-7 with previous version 0.9-6 dated 2013-04-16

Title: Planning and Analyzing Dose Finding experiments
Description: The DoseFinding package provides functions for the design and analysis of dose-finding experiments (with focus on pharmaceutical Phase II clinical trials). It provides functions for: multiple contrast tests, fitting non-linear dose-response models (using Bayesian and non-Bayesian estimation), calculating optimal designs and an implementation of the MCPMod methodology.
Author: Bjoern Bornkamp, Jose Pinheiro, Frank Bretz
Maintainer: Bjoern Bornkamp

Diff between DoseFinding versions 0.9-6 dated 2013-04-16 and 0.9-7 dated 2013-08-15

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Package latticeExtra updated to version 0.6-26 with previous version 0.6-24 dated 2012-08-23

Title: Extra Graphical Utilities Based on Lattice
Description: Extra graphical utilities based on lattice
Author: Deepayan Sarkar , Felix Andrews
Maintainer: Deepayan Sarkar

Diff between latticeExtra versions 0.6-24 dated 2012-08-23 and 0.6-26 dated 2013-08-15

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Package lattice updated to version 0.20-21 with previous version 0.20-15 dated 2013-03-25

Title: Lattice Graphics
Description: Lattice is a powerful and elegant high-level data visualization system, with an emphasis on multivariate data, that is sufficient for typical graphics needs, and is also flexible enough to handle most nonstandard requirements. See ?Lattice for an introduction.
Author: Deepayan Sarkar
Maintainer: Deepayan Sarkar

Diff between lattice versions 0.20-15 dated 2013-03-25 and 0.20-21 dated 2013-08-15

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Package GWmodel updated to version 1.2-1 with previous version 1.1-9 dated 2013-06-02

Title: Geographically weighted models
Description: Functions for computing geographically weighted models
Author: Binbin Lu, Paul Harris, Isabella Gollini, Martin Charlton, Chris Brunsdon
Maintainer: Binbin Lu

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Package deSolve updated to version 1.10-7 with previous version 1.10-6 dated 2013-04-23

Title: General Solvers for Initial Value Problems of Ordinary Differential Equations (ODE), Partial Differential Equations (PDE), Differential Algebraic Equations (DAE), and Delay Differential Equations (DDE)
Description: Functions that solve initial value problems of a system of first-order ordinary differential equations (ODE), of partial differential equations (PDE), of differential algebraic equations (DAE), and of delay differential equations. The functions provide an interface to the FORTRAN functions lsoda, lsodar, lsode, lsodes of the ODEPACK collection, to the FORTRAN functions dvode and daspk and a C-implementation of solvers of the Runge-Kutta family with fixed or variable time steps. The package contains routines designed for solving ODEs resulting from 1-D, 2-D and 3-D partial differential equations (PDE) that have been converted to ODEs by numerical differencing.
Author: Karline Soetaert and Thomas Petzoldt and R. Woodrow Setzer
Maintainer: Thomas Petzoldt

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Package bvpSolve updated to version 1.2.4 with previous version 1.2.3.1 dated 2013-05-13

Title: Solvers for boundary value problems of ordinary differential equations
Description: Functions that solve boundary value problems (BVP) of systems of ordinary differential equations (ODE). The functions provide an interface to the FORTRAN functionS twpbvpC, colnew/colsys, and an R-implementation of the shooting method.
Author: Karline Soetaert , Jeff Cash , Francesca Mazzia
Maintainer: Karline Soetaert

Diff between bvpSolve versions 1.2.3.1 dated 2013-05-13 and 1.2.4 dated 2013-08-15

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Package rpart updated to version 4.1-2 with previous version 4.1-1 dated 2013-03-20

Title: Recursive Partitioning
Description: Recursive partitioning and regression trees
Author: Terry Therneau [aut], Beth Atkinson [aut], Brian Ripley [aut, trl, cre] (author of R port)
Maintainer: Brian Ripley

Diff between rpart versions 4.1-1 dated 2013-03-20 and 4.1-2 dated 2013-08-15

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Package nlme updated to version 3.1-111 with previous version 3.1-110 dated 2013-07-07

Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear mixed-effects models.
Author: José Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb], R-core [aut, cre]
Maintainer: R-core

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Package RcppArmadillo updated to version 0.3.910.0 with previous version 0.3.900.7 dated 2013-08-04

Title: Rcpp integration for Armadillo templated linear algebra library
Description: R and Armadillo integration using Rcpp Armadillo is a templated C++ linear algebra library (by Conrad Sanderson) that aims towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries. A delayed evaluation approach is employed (during compile time) to combine several operations into one, and to reduce (or eliminate) the need for temporaries. This is accomplished through recursive templates and template meta-programming. This library is useful if C++ has been decided as the language of choice (due to speed and/or integration capabilities), rather than another language. The RcppArmadillo package includes the header files from the templated Armadillo library (currently version 3.910.0). Thus users do not need to install Armadillo itself in order to use RcppArmadillo. This Armadillo integration provides a nice illustration of the capabilities of the Rcpp package for seamless R and C++ integration. Armadillo is licensed under the MPL 2.0, while RcppArmadillo (the Rcpp bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Dirk Eddelbuettel

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 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/Glue_meat.hpp                |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/Mat_bones.hpp                |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/Mat_meat.hpp                 |  106 -
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/OpCube_bones.hpp             |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/OpCube_meat.hpp              |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/Op_bones.hpp                 |    4 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/Op_meat.hpp                  |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/Proxy.hpp                    |   50 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/ProxyCube.hpp                |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/Row_bones.hpp                |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/Row_meat.hpp                 |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/SpBase_bones.hpp             |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/SpBase_meat.hpp              |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/SpMat_meat.hpp               |   30 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/SpSubview_iterators_meat.hpp |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/access.hpp                   |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/arma_config.hpp              |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/arma_ostream_bones.hpp       |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/arma_ostream_meat.hpp        |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/arma_static_check.hpp        |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/arma_version.hpp             |    8 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/arrayops_bones.hpp           |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/arrayops_meat.hpp            |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/atlas_bones.hpp              |   27 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/atlas_wrapper.hpp            |   62 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/auxlib_bones.hpp             |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/auxlib_meat.hpp              |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/blas_bones.hpp               |   22 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/blas_wrapper.hpp             |   52 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/cmath_wrap.hpp               |   48 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/compiler_setup.hpp           |   15 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/compiler_setup_post.hpp      |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/config.hpp                   |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/constants.hpp                |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/constants_compat.hpp         |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/debug.hpp                    |   22 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/eGlueCube_bones.hpp          |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/eGlueCube_meat.hpp           |   26 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/eGlue_bones.hpp              |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/eGlue_meat.hpp               |   26 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/eOpCube_bones.hpp            |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/eOpCube_meat.hpp             |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/eOp_bones.hpp                |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/eOp_meat.hpp                 |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/eglue_core_bones.hpp         |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/eglue_core_meat.hpp          |  322 ++--
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/eop_aux.hpp                  |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/eop_core_bones.hpp           |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/eop_core_meat.hpp            |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/field_bones.hpp              |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/field_meat.hpp               |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_accu.hpp                  |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_all.hpp                   |only
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_any.hpp                   |only
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_as_scalar.hpp             |   14 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_chol.hpp                  |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_conv.hpp                  |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_conv_to.hpp               |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_cor.hpp                   |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_cov.hpp                   |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_cross.hpp                 |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_cumsum.hpp                |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_det.hpp                   |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_diagmat.hpp               |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_diagvec.hpp               |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_dot.hpp                   |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_eig.hpp                   |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_elem.hpp                  |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_eps.hpp                   |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_eye.hpp                   |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_flip.hpp                  |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_hist.hpp                  |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_histc.hpp                 |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_inv.hpp                   |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_join.hpp                  |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_kron.hpp                  |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_log_det.hpp               |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_lu.hpp                    |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_max.hpp                   |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_mean.hpp                  |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_median.hpp                |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_min.hpp                   |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_misc.hpp                  |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_norm.hpp                  |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_ones.hpp                  |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_pinv.hpp                  |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_princomp.hpp              |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_prod.hpp                  |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_qr.hpp                    |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_randn.hpp                 |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_randu.hpp                 |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_rank.hpp                  |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_repmat.hpp                |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_reshape.hpp               |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_resize.hpp                |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_shuffle.hpp               |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_solve.hpp                 |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_sort.hpp                  |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_sort_index.hpp            |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_stddev.hpp                |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_strans.hpp                |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_sum.hpp                   |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_svd.hpp                   |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_syl_lyap.hpp              |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_symmat.hpp                |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_toeplitz.hpp              |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_trace.hpp                 |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_trans.hpp                 |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_trig.hpp                  |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_trimat.hpp                |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_trunc_exp.hpp             |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_trunc_log.hpp             |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_unique.hpp                |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_var.hpp                   |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_vectorise.hpp             |only
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/fn_zeros.hpp                 |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/format_wrap.hpp              |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/forward_bones.hpp            |    3 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_conv_bones.hpp          |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_conv_meat.hpp           |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_cor_bones.hpp           |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_cor_meat.hpp            |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_cov_bones.hpp           |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_cov_meat.hpp            |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_cross_bones.hpp         |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_cross_meat.hpp          |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_hist_bones.hpp          |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_hist_meat.hpp           |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_histc_bones.hpp         |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_histc_meat.hpp          |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_join_bones.hpp          |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_join_meat.hpp           |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_kron_bones.hpp          |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_kron_meat.hpp           |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_mixed_bones.hpp         |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_mixed_meat.hpp          |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_relational_bones.hpp    |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_relational_meat.hpp     |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_solve_bones.hpp         |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_solve_meat.hpp          |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_times_bones.hpp         |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_times_meat.hpp          |  405 +-----
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_toeplitz_bones.hpp      |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/glue_toeplitz_meat.hpp       |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/include_atlas.hpp            |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/injector_bones.hpp           |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/injector_meat.hpp            |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/lapack_bones.hpp             |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/lapack_wrapper.hpp           |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/memory.hpp                   |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/mtGlueCube_bones.hpp         |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/mtGlueCube_meat.hpp          |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/mtGlue_bones.hpp             |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/mtGlue_meat.hpp              |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/mtOpCube_bones.hpp           |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/mtOpCube_meat.hpp            |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/mtOp_bones.hpp               |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/mtOp_meat.hpp                |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/mul_gemm.hpp                 |only
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/mul_gemm_mixed.hpp           |only
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/mul_gemv.hpp                 |only
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/mul_herk.hpp                 |only
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/mul_syrk.hpp                 |only
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_all_bones.hpp             |only
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_all_meat.hpp              |only
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_any_bones.hpp             |only
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_any_meat.hpp              |only
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_chol_bones.hpp            |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_chol_meat.hpp             |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_cor_bones.hpp             |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_cor_meat.hpp              |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_cov_bones.hpp             |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_cov_meat.hpp              |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_cumsum_bones.hpp          |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_cumsum_meat.hpp           |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_cx_scalar_bones.hpp       |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_cx_scalar_meat.hpp        |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_diagmat_bones.hpp         |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_diagmat_meat.hpp          |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_diagvec_bones.hpp         |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_diagvec_meat.hpp          |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_dot_bones.hpp             |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_dot_meat.hpp              |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_dotext_bones.hpp          |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_dotext_meat.hpp           |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_find_bones.hpp            |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_find_meat.hpp             |  102 -
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_flip_bones.hpp            |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_flip_meat.hpp             |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_hist_bones.hpp            |    2 
 RcppArmadillo-0.3.910.0/RcppArmadillo/inst/include/armadillo_bits/op_hist_meat.hpp             |    2 
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Package DBKGrad updated to version 1.3 with previous version 1.2 dated 2013-06-22

Title: Discrete Beta Kernel Graduation of mortality data
Description: This package allows for nonparametric graduation of mortality rates using fixed or adaptive discrete beta kernel estimator.
Author: Angelo Mazza and Antonio Punzo
Maintainer: Angelo Mazza

Diff between DBKGrad versions 1.2 dated 2013-06-22 and 1.3 dated 2013-08-15

 DESCRIPTION    |   12 +++++-------
 MD5            |    6 +++---
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 4 files changed, 43 insertions(+), 32 deletions(-)

More information about DBKGrad at CRAN
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Package RadialPlotter updated to version 1.9 with previous version 1.8 dated 2013-06-25

Title: Numeric routines for optical stimulated luminescence dating
Description: Package for optimizing regular numeric problems in optical stimulated luminescence dating
Author: Peng Jun
Maintainer: Peng Jun

Diff between RadialPlotter versions 1.8 dated 2013-06-25 and 1.9 dated 2013-08-15

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New package SigTree with initial version 1.3
Package: SigTree
Type: Package
Title: Functions to determine significantly responsive branches of phylogenetic trees and produce colored plots both in FigTree (via exported file) and R
Version: 1.3
Date: 2013-08-14
Author: John R. Stevens and Todd R. Jones
Maintainer: John R. Stevens
Description: SigTree takes a phylogenetic tree (of class phylo) and a data frame (or matrix) of corresponding tip labels and p-values and determines the significance of the branches (families of p-values) and plots the tree with colored branches (corresponding to families) according to the levels of significance, Also produces a CSV file with the p-values of all of the branches as well as which tips belong to which branches. Finally, it exports a file that can be opened in FigTree that produces a colored plot (colored branches according to the significance of corresponding groups of p-values) with p-value annotations.
Depends: ape, phylobase, phyext, RColorBrewer, phyloseq
License: GPL-3
Packaged: 2013-08-14 22:27:15 UTC; John Stevens
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2013-08-15 06:57:23

More information about SigTree at CRAN
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New package referenceIntervals with initial version 1.0
Package: referenceIntervals
Type: Package
Title: Reference Intervals
Version: 1.0
Date: 2013-08-10
Author: Daniel Finnegan
Maintainer: Daniel Finnegan
Depends: boot, extremevalues
LazyData: true
Description: This is a collection of tools to allow the medical professional to calculate appropriate reference ranges (intervals) with confidence intervals around the limits for diagnostic purposes.
License: GPL-3
Packaged: 2013-08-14 11:04:45 UTC; finny
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-08-15 07:08:58

More information about referenceIntervals at CRAN
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Package quantreg updated to version 5.02 with previous version 5.01 dated 2013-08-06

Title: Quantile Regression
Description: Quantile regression and related methods.
Author: Roger Koenker
Maintainer: Roger Koenker

Diff between quantreg versions 5.01 dated 2013-08-06 and 5.02 dated 2013-08-15

 DESCRIPTION    |    6 +++---
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 4 files changed, 24 insertions(+), 13 deletions(-)

More information about quantreg at CRAN
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Package ngspatial updated to version 1.0-1 with previous version 1.0 dated 2013-06-02

Title: Classes for Spatial Data
Description: ngspatial provides tools for analyzing spatial data, especially non-Gaussian areal data.
Author: John Hughes and Xiaohui Cui
Maintainer: John Hughes

Diff between ngspatial versions 1.0 dated 2013-06-02 and 1.0-1 dated 2013-08-15

 DESCRIPTION |   13 ++++++-------
 MD5         |    4 ++--
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 3 files changed, 10 insertions(+), 10 deletions(-)

More information about ngspatial at CRAN
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Package HiveR updated to version 0.2-13 with previous version 0.2-10 dated 2013-04-02

Title: 2D and 3D Hive Plots for R
Description: HiveR is an R package for creating and plotting 2D and 3D hive plots. Hive plots are a unique method of displaying networks of many types in which node properties are mapped to axes using meaningful properties rather than being arbitrarily positioned. The hive plot concept was invented by Martin Krzywinski at the Genome Science Center (www.hiveplot.net/). Keywords: networks, food webs, linnet, systems biology, bioinformatics.
Author: Bryan Hanson [aut, cre], Vena Memisevic [ctb], Jonathan Chung [ctb]
Maintainer: Bryan A. Hanson

Diff between HiveR versions 0.2-10 dated 2013-04-02 and 0.2-13 dated 2013-08-15

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Package conjoint updated to version 1.39 with previous version 1.35 dated 2012-08-18

Title: Conjoint analysis package
Description: Conjoint is a simple package that implements a conjoint analysis method to measure the preferences.
Author: Andrzej Bak , Tomasz Bartlomowicz
Maintainer: Tomasz Bartlomowicz

Diff between conjoint versions 1.35 dated 2012-08-18 and 1.39 dated 2013-08-15

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New package DCGL with initial version 2.0.2
Package: DCGL
Type: Package
Title: Differential Co-expression Analysis and Differential Regulation Analysis of Gene Expression Microarray Data
Version: 2.0.2
Date: 2013-08-14
Author: Jing Yang, Hui Yu, Bao-Hong Liu
Maintainer: Bao-Hong Liu
Description: Functions for 1) gene filtration; 2) link filtration; 3) differential co-expression analysis: DCG (Differential Coexpressed Gene) identification and DCL (Differentially Coexpressed Link) identification; and 4) differential regulation analysis: DRG (Differential Regulated Gene) identification, DRL (Differential Regulated Link) identification, DRL visualization and regulator ranking.
Depends: R (>= 2.10)
Imports: igraph, limma
License: GPL (> 2)
LazyLoad: yes
Repository: CRAN
Packaged: 2013-08-15 02:56:17 UTC; Administrator
NeedsCompilation: no
Date/Publication: 2013-08-15 06:52:56

More information about DCGL at CRAN
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Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.