Tue, 29 Oct 2013

Package visreg updated to version 2.0-4 with previous version 2.0-3 dated 2013-09-27

Title: Visualization of regression models
Description: Provides convenient interface for constructing plots to visualize the fit of regression models arising from a wide variety of models in R (lm, glm, coxph, rlm, gam, locfit, etc.)
Author: Patrick Breheny, Woodrow Burchett
Maintainer: Patrick Breheny

Diff between visreg versions 2.0-3 dated 2013-09-27 and 2.0-4 dated 2013-10-29

 DESCRIPTION                 |    8 ++++----
 MD5                         |   17 +++++++++--------
 NEWS                        |    7 ++++++-
 R/Response.R                |   17 +++++++++++++----
 R/Terms.R                   |    1 -
 R/removeFormulaFormatting.R |    2 ++
 R/setupF.R                  |   26 ++++++++++++++++----------
 inst                        |only
 man/visreg-faq.Rd           |   37 +++++++++++++++++++++++++------------
 tests/visreg-mlm.R          |    3 +--
 10 files changed, 76 insertions(+), 42 deletions(-)

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New package smam with initial version 0.2-1
Package: smam
Type: Package
Title: Statistical Modeling of Animal Movements
Version: 0.2-1
Date: 2013-10-26
Author: Jun Yan and Vladimir Pozdnyakov
Maintainer: Jun Yan
Depends: Matrix
Description: Animal movement models including moving-resting process with embedded Brownian motion, Brownian motion with measurement error.
License: GPL (>= 3.0)
Packaged: 2013-10-29 19:32:22 UTC; jyan
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2013-10-29 22:29:42

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Package gmp updated to version 0.5-9 with previous version 0.5-8 dated 2013-09-26

Title: Multiple Precision Arithmetic
Description: Multiple Precision Arithmetic (big integers and rationals, prime number tests, matrix computation), "arithmetic without limitations" using the C library GMP (GNU Multiple Precision Arithmetic).
Author: Antoine Lucas, Immanuel Scholz, Rainer Boehme , Sylvain Jasson , Martin Maechler
Maintainer: Antoine Lucas

Diff between gmp versions 0.5-8 dated 2013-09-26 and 0.5-9 dated 2013-10-29

 ChangeLog            |    2 ++
 DESCRIPTION          |    6 +++---
 MD5                  |    6 +++---
 src/extract_matrix.h |    2 +-
 4 files changed, 9 insertions(+), 7 deletions(-)

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Package doSNOW updated to version 1.0.9 with previous version 1.0.7 dated 2013-06-06

Title: Foreach parallel adaptor for the snow package
Description: Provides a parallel backend for the %dopar% function using Luke Tierney's snow package.
Author: Revolution Analytics
Maintainer: Revolution Analytics

Diff between doSNOW versions 1.0.7 dated 2013-06-06 and 1.0.9 dated 2013-10-29

 DESCRIPTION |   10 +++++-----
 MD5         |    6 +++---
 NAMESPACE   |    2 +-
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 4 files changed, 39 insertions(+), 13 deletions(-)

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Package doMC updated to version 1.3.1 with previous version 1.3.0 dated 2013-02-22

Title: Foreach parallel adaptor for the multicore package
Description: Provides a parallel backend for the %dopar% function using the multicore functionality of the parallel package..
Author: Revolution Analytics
Maintainer: Revolution Analytics

Diff between doMC versions 1.3.0 dated 2013-02-22 and 1.3.1 dated 2013-10-29

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 8 files changed, 23 insertions(+), 12 deletions(-)

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New package Bayesianbetareg with initial version 1.0
Package: Bayesianbetareg
Type: Package
Title: Bayesian Beta regression
License: GPL (>= 2)
Version: 1.0
Date: 2013-08-31
Author: The code in R and guide document were prepared by Margarita Marin and Javier Rojas and Daniel Jaimes, under the direction of the professor Edilberto Cepeda and with collaboration of Martha Corrales, Maria Fernanda Zarate, Ricardo Duplat and Luis F Villarraga.
Maintainer: Margarita Marin
Depends: R (>= 2.12.1), mvtnorm, betareg
Description: This package performs beta regression
Encoding: latin1
Packaged: 2013-10-29 20:17:22 UTC; Admin
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-10-29 22:35:45

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Package SharpeR updated to version 0.1310 with previous version 0.1309 dated 2013-09-22

Title: Statistical significance of Sharpe ratio
Description: a collection of tools for analyzing significance of trading strategies, based on the Sharpe ratio and overfit of the same.
Author: Steven E. Pav
Maintainer: Steven E. Pav

Diff between SharpeR versions 0.1309 dated 2013-09-22 and 0.1310 dated 2013-10-29

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 DESCRIPTION                           |   19 
 MD5                                   |   43 
 NAMESPACE                             |    2 
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 27 files changed, 4415 insertions(+), 546 deletions(-)

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Package lessR updated to version 2.9.7 with previous version 2.9.4 dated 2013-08-26

Title: Less Code, More Results
Description: Each function accomplishes the work of several or more standard R functions. For example, two function calls, Read() and CountAll(), read the data and generate descriptive statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for descriptive statistics, a comprehensive regression analysis, analysis of variance and t-test, plotting, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function and color themes. The function Help provides a help system that suggests specific analyses and functions. Variable labels are available. A confirmatory factor analysis of multiple indicator measurement models is also available as well as pedagogical routines for data simulation such as for the Central Limit Theorem.
Author: David W. Gerbing, School of Business Administration, Portland State University
Maintainer: David W. Gerbing

Diff between lessR versions 2.9.4 dated 2013-08-26 and 2.9.7 dated 2013-10-29

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 NAMESPACE          |    5 -
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 17 files changed, 365 insertions(+), 203 deletions(-)

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Package AFLPsim updated to version 0.2-2 with previous version 0.1-4 dated 2013-08-18

Title: Hybrid simulation and genome scan for dominant markers
Description: This package is developed in the Plant Reproductive Biology Lab (RNM-214) - University of Seville. It contains hybrid simulation functions for dominant genetic data. It also provides several genome scan methods.
Author: Francisco Balao [aut, cre], Juan Luis García-Castaño [aut]
Maintainer: Francisco Balao

Diff between AFLPsim versions 0.1-4 dated 2013-08-18 and 0.2-2 dated 2013-10-29

 DESCRIPTION            |   11 ++++++-----
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 man/sim2newhybrids.Rd  |    4 ++--
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 11 files changed, 46 insertions(+), 37 deletions(-)

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Package TraMineRextras updated to version 0.2.2 with previous version 0.2.1 dated 2013-03-15

Title: Extras for use with the TraMineR package
Description: Collection of ancillary functions and utilities to be used in conjunction with the TraMineR package for sequence data exploration. Most of the functions are in test phase, lack systematic consistency check of the arguments and are subject to changes. Once fully checked, some of the functions of this collection could be included in a next release of TraMineR.
Author: Gilbert Ritschard [aut, cre, ths, cph], Matthias Studer [aut], Reto Buergin [aut], Alexis Gabadinho [ctb], Nicolas Muller [ctb], Patrick Rousset [ctb]
Maintainer: Gilbert Ritschard

Diff between TraMineRextras versions 0.2.1 dated 2013-03-15 and 0.2.2 dated 2013-10-29

 DESCRIPTION      |   40 ++++++++++++++++++++--------------------
 MD5              |   24 ++++++++++++------------
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 R/seqeordplot.R  |    2 --
 R/seqstart.R     |    4 +---
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 13 files changed, 63 insertions(+), 61 deletions(-)

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Package RWeka updated to version 0.4-21 with previous version 0.4-20 dated 2013-10-15

Title: R/Weka interface
Description: An R interface to Weka (Version 3.7.10). Weka is a collection of machine learning algorithms for data mining tasks written in Java, containing tools for data pre-processing, classification, regression, clustering, association rules, and visualization. Package RWeka contains the interface code, the Weka jar is in a separate package RWekajars. For more information on Weka see http://www.cs.waikato.ac.nz/~ml/weka/.
Author: Kurt Hornik [aut, cre], Christian Buchta [ctb], Torsten Hothorn [ctb], Alexandros Karatzoglou [ctb], David Meyer [ctb], Achim Zeileis [ctb]
Maintainer: Kurt Hornik

Diff between RWeka versions 0.4-20 dated 2013-10-15 and 0.4-21 dated 2013-10-29

 CHANGELOG          |    6 +++++-
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 MD5                |    8 ++++----
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 5 files changed, 13 insertions(+), 9 deletions(-)

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New package gWidgets2tcltk with initial version 1.0-2
Package: gWidgets2tcltk
Version: 1.0-2
Title: Toolkit implementation of gWidgets2 for tcltk package
Author: John Verzani
Maintainer: John Verzani
URL: https://github.com/jverzani/gWidgets2tcltk
Depends: R (>= 2.12.0), methods, digest, memoise, tcltk(>= 2.7.0), gWidgets2
Suggests: testthat
Description: Port of the gWidgets2 API to the tcltk package.
License: GPL (>= 2)
LazyLoad: yes
Collate: 'gWidgets2tcltk-package.R' 'List.R' 'misc.R' 'tcltk-misc.R' 'dnd.R' 'GComponent.R' 'GWidget.R' 'GContainer.R' 'dialogs.R' 'gmenu.R' 'gaction.R' 'gbutton.R' 'gcalendar.R' 'gcheckbox.R' 'gtable.R' 'gcheckboxgroup.R' 'gcombobox.R' 'tablelist.R' 'gdf.R' 'gedit.R' 'gexpandgroup.R' 'gfile.R' 'gformlayout.R' 'ggroup.R' 'gframe.R' 'gimage.R' 'glabel.R' 'glayout.R' 'gnotebook.R' 'gpanedgroup.R' 'gradio.R' 'gseparator.R' 'gslider.R' 'gspinbutton.R' 'gstackwidget.R' 'gstatusbar.R' 'gtext.R' 'gtimer.R' 'gtoolbar.R' 'gtree.R' 'gwindow.R' 'icons.R' 'zzz.R' 'gvarbrowser.R' 'tk2tip.R' 'gprogressbar.R'
Packaged: 2013-10-29 15:17:06 UTC; verzani
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-10-29 18:04:24

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Package foreign updated to version 0.8-57 with previous version 0.8-56 dated 2013-10-07

Title: Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, Weka, dBase, ...
Description: Functions for reading and writing data stored by some versions of Epi Info, Minitab, S, SAS, SPSS, Stata, Systat and Weka and for reading and writing some dBase files.
Author: R Core Team [aut, cph, cre], Roger Bivand [ctb, cph], Vincent J. Carey [ctb, cph], Saikat DebRoy [ctb, cph], Stephen Eglen [ctb, cph], Rajarshi Guha [ctb, cph], Nicholas Lewin-Koh [ctb, cph], Mark Myatt [ctb, cph], Ben Pfaff [ctb], Brian Quistorff [ctb], Frank Warmerdam [ctb, cph], Stephen Weigand [ctb, cph], Free Software Foundation, Inc. [cph]
Maintainer: R Core Team

Diff between foreign versions 0.8-56 dated 2013-10-07 and 0.8-57 dated 2013-10-29

 ChangeLog       |   12 ++++++++++++
 DESCRIPTION     |    8 ++++----
 MD5             |   10 +++++-----
 R/arff.R        |    2 +-
 man/read.dta.Rd |    4 +++-
 src/stataread.c |   13 +++++--------
 6 files changed, 30 insertions(+), 19 deletions(-)

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New package survsim with initial version 1.0.0
Package: survsim
Type: Package
Title: Simulation of simple and complex survival data
Version: 1.0.0
Date: 2013-10-11
Encoding: UTF-8
Author: David Moriña, Centre Tecnològic de Nutrició i Salut and Albert Navarro, Universitat Autònoma de Barcelona
Maintainer: David Moriña Soler
Description: Simulation of simple and complex survival data
Depends: R (>= 2.13.1), eha, statmod
Repository: CRAN
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2013-10-29 14:08:49 UTC; dmorinya
NeedsCompilation: no
Date/Publication: 2013-10-29 15:30:37

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Package RcppOctave updated to version 0.11.3 with previous version 0.11.2 dated 2013-10-22

Title: Seamless Interface to Octave -- and Matlab
Description: Direct interface to Octave. The primary goal is to facilitate the port of Matlab/Octave scripts to R. The package enables to call any Octave functions from R and as well as browsing their documentation, passing variables between R and Octave, using R core RNGs in Octave, which ensures that stochastic computations are also reproducible.
Author: Renaud Gaujoux [aut, cre], Dirk Eddelbuettel [ctb] (Helped with configure and Rcpp), Dominick Samperi [ctb] (Helped with Windows/Mac port)
Maintainer: Renaud Gaujoux

Diff between RcppOctave versions 0.11.2 dated 2013-10-22 and 0.11.3 dated 2013-10-29

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Package Rcpp updated to version 0.10.6 with previous version 0.10.5 dated 2013-09-29

Title: Seamless R and C++ Integration
Description: The Rcpp package provides R functions as well as a C++ library which facilitate the integration of R and C++. R data types (SEXP) are matched to C++ objects in a class hierarchy. All R types are supported (vectors, functions, environment, etc ...) and each type is mapped to a dedicated class. For example, numeric vectors are represented as instances of the Rcpp::NumericVector class, environments are represented as instances of Rcpp::Environment, functions are represented as Rcpp::Function, etc ... The "Rcpp-introduction" vignette provides a good entry point to Rcpp. Conversion from C++ to R and back is driven by the templates Rcpp::wrap and Rcpp::as which are highly flexible and extensible, as documented in the "Rcpp-extending" vignette. Rcpp also provides Rcpp modules, a framework that allows exposing C++ functions and classes to the R level. The "Rcpp-modules" vignette details the current set of features of Rcpp-modules. Rcpp includes a concept called Rcpp sugar that brings many R functions into C++. Sugar takes advantage of lazy evaluation and expression templates to achieve great performance while exposing a syntax that is much nicer to use than the equivalent low-level loop code. The "Rcpp-sugar" vignette gives an overview of the feature. Rcpp attributes provide a high-level syntax for declaring C++ functions as callable from R and automatically generating the code required to invoke them. Attributes are intended to facilitate both interactive use of C++ within R sessions as well as to support R package development. Attributes are built on top of Rcpp modules and their implementation is based on previous work in the inline package. Many examples are included, and around 872 unit tests in 422 unit test functions provide additional usage examples. An earlier version of Rcpp, containing what we now call the 'classic Rcpp API' was written during 2005 and 2006 by Dominick Samperi. This code has been factored out of Rcpp into the package RcppClassic, and it is still available for code relying on the older interface. New development should always use this Rcpp package instead. Additional documentation is available via the paper by Eddelbuettel and Francois (2011, JSS) paper and the book by Eddelbuettel (2013, Springer); see 'citation("Rcpp")' for details.
Author: Dirk Eddelbuettel and Romain Francois, with contributions by Douglas Bates, John Chambers and JJ Allaire
Maintainer: Dirk Eddelbuettel

Diff between Rcpp versions 0.10.5 dated 2013-09-29 and 0.10.6 dated 2013-10-29

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New package NAPPA with initial version 1.0
Package: NAPPA
Type: Package
Title: Performs the processing and normalisation of Nanostring miRNA and mRNA data
Version: 1.0
Date: 2013-10-04
Author: Mark Wappett
Maintainer: Mark Wappett
Depends: R (>= 3.0.1), plyr (>= 1.8)
Description: Enables the processing and normalisation of the standard mRNA data output from the Nanostring nCounter software
License: GPL-2
Repository: CRAN
Packaged: 2013-10-29 11:29:37 UTC; kcfk059
NeedsCompilation: no
Date/Publication: 2013-10-29 14:33:19

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Package lm.br updated to version 2.4 with previous version 2.2 dated 2013-10-24

Title: Linear Model with Breakpoint
Description: Exact significance tests for a changepoint in linear or multivariate linear regression. Confidence regions with exact coverage probabilities for the changepoint.
Author: Marc Adams [aut, cre], authors of R function 'lm' [ctb] (general interface), authors of 'lm.gls' [ctb] (interface and R code for matrix weights), U.S. NIST [ctb] (C++ code for TNT::Vector template)
Maintainer: Marc Adams

Diff between lm.br versions 2.2 dated 2013-10-24 and 2.4 dated 2013-10-29

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Package cccd updated to version 1.04 with previous version 1.03 dated 2013-03-24

Title: Class Cover Catch Digraphs
Description: Class Cover Catch Digraphs, neighborhood graphs, and relatives.
Author: David J. Marchette,
Maintainer: David J. Marchette,

Diff between cccd versions 1.03 dated 2013-03-24 and 1.04 dated 2013-10-29

 DESCRIPTION |   10 +++++-----
 MD5         |    2 +-
 2 files changed, 6 insertions(+), 6 deletions(-)

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Package abc updated to version 1.8 with previous version 1.7 dated 2013-06-06

Title: Tools for Approximate Bayesian Computation (ABC)
Description: The package implements several ABC algorithms for performing parameter estimation and model selection. Cross-validation tools are also available for measuring the accuracy of ABC estimates, and to calculate the misclassification probabilities of different models.
Author: Katalin Csillery, Michael Blum and Olivier Francois
Maintainer: Michael Blum

Diff between abc versions 1.7 dated 2013-06-06 and 1.8 dated 2013-10-29

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Package quantregGrowth updated to version 0.1-2 with previous version 0.1-1 dated 2013-01-10

Title: Growth charts via regression quantiles
Description: Fits non-crossing regression quantiles as a function of linear covariates and a smooth term via B-spline with quadratic penalty.
Author: Vito M. R. Muggeo [aut, cre]
Maintainer: Vito M. R. Muggeo

Diff between quantregGrowth versions 0.1-1 dated 2013-01-10 and 0.1-2 dated 2013-10-29

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Package MuMIn updated to version 1.9.13 with previous version 1.9.11 dated 2013-10-18

Title: Multi-model inference
Description: Model selection and model averaging based on information criteria (AICc and alike).
Author: Kamil Bartoń
Maintainer: Kamil Bartoń

Diff between MuMIn versions 1.9.11 dated 2013-10-18 and 1.9.13 dated 2013-10-29

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Package rNOMADS updated to version 1.2.0 with previous version 1.0.1 dated 2013-08-23

Title: An interface to the NOAA Operational Model Archive and Distribution System
Description: An interface to the National Oceanic and Atmospheric Administration's Operational Model Archive and Distribution System (NOMADS) that allows R users to quickly and efficiently download global and regional weather model data for processing. rNOMADS currently supports 54 models, ranging from global weather data to an altitude of 40 km, to high resolution regional weather models, to wave and sea ice models. rNOMADS uses an external series of routines called wgrib2 to read the model data into R; get wgrib2 at http://www.cpc.ncep.noaa.gov/products/wesley/wgrib2/. Future versions of rNOMADS will have a native data reader.
Author: Daniel C. Bowman [aut, cre]
Maintainer: Daniel C. Bowman

Diff between rNOMADS versions 1.0.1 dated 2013-08-23 and 1.2.0 dated 2013-10-29

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Package Matching updated to version 4.8-3.4 with previous version 4.8-3.1 dated 2013-06-28

Title: Multivariate and Propensity Score Matching with Balance Optimization
Description: Provides functions for multivariate and propensity score matching and for finding optimal balance based on a genetic search algorithm. A variety of univariate and multivariate metrics to determine if balance has been obtained are also provided.
Author: Jasjeet Singh Sekhon
Maintainer: Jasjeet Singh Sekhon

Diff between Matching versions 4.8-3.1 dated 2013-06-28 and 4.8-3.4 dated 2013-10-29

 ChangeLog                |    7 
 DESCRIPTION              |   22 
 MD5                      |   18 
 R/GenMatching.R          |    6 
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New package gWidgets2RGtk2 with initial version 1.0-2
Package: gWidgets2RGtk2
Type: Package
Title: Implementation of gWidgets2 for RGtk2 package
Version: 1.0-2
Date: 2011-09-18
Author: John Verzani
Maintainer: John Verzani
URL: https://github.com/jverzani/gWidgets2RGtk2
Description: Implements gWidgets2 API for RGtk2
License: GPL-3
Depends: methods, memoise, RGtk2, gWidgets2
Suggests: testthat, cairoDevice
LazyLoad: yes
Collate: 'gWidgets2RGtk2-package.R' 'misc.R' 'gtk-misc.R' 'GComponent.R' 'GContainer.R' 'GWidget.R' 'icons.R' 'startup.R' 'gbutton.R' 'ggroup.R' 'gframe.R' 'gexpandgroup.R' 'gcheckbox.R' 'gcheckboxgroup.R' 'gcombobox.R' 'gnotebook.R' 'gpanedgroup.R' 'gseparator.R' 'gstackwidget.R' 'gwindow.R' 'gmenu.R' 'gstatusbar.R' 'gtoolbar.R' 'gslider.R' 'gspinbutton.R' 'glayout.R' 'gradio.R' 'dialogs.R' 'gcalendar.R' 'gfile.R' 'gaction.R' 'ggraphics.R' 'gtable.R' 'gdf.R' 'gtext.R' 'gimage.R' 'glabel.R' 'gtimer.R' 'gtree.R' 'gvarbrowser.R' 'gedit.R' 'gformlayout.R' 'gprogressbar.R'
Packaged: 2013-10-29 02:04:00 UTC; verzani
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-10-29 08:00:08

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New package cluster.datasets with initial version 1.0-1
Package: cluster.datasets
Version: 1.0-1
Date: 2013-10-28
Author: Frederick Novomestky
Maintainer: Frederick Novomestky
Depends: R (>= 2.0.1)
Description: A collection of data sets for teaching cluster analysis.
Title: Cluster Analysis Data Sets
License: GPL (>= 2)
Packaged: 2013-10-28 22:49:31 UTC; fred
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-10-29 07:55:17

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