Title: adephylo: exploratory analyses for the phylogenetic comparative
method.
Diff between adephylo versions 1.1-5 dated 2013-08-10 and 1.1-6 dated 2013-11-30
Description: Multivariate tools to analyze comparative data, i.e. a phylogeny and some traits measured for each taxa.
Author: Thibaut Jombart
Maintainer: Thibaut Jombart
DESCRIPTION | 17 ++++++----
MD5 | 55 ++++++++++++++++-----------------
NAMESPACE | 2 -
R/orthogram.R | 10 +++---
build |only
data/carni19.RData |binary
data/carni70.RData |binary
data/lizards.RData |binary
data/maples.RData |binary
data/mjrochet.RData |binary
data/palm.RData |binary
data/procella.RData |binary
data/tithonia.RData |binary
data/ungulates.RData |binary
inst/doc/adephylo.pdf |binary
man/ppca.Rd | 5 +--
man/table.phylo4d.Rd | 1
vignettes/figs/adephylo-012.pdf |binary
vignettes/figs/adephylo-016.pdf |binary
vignettes/figs/adephylo-018.pdf |binary
vignettes/figs/adephylo-aboutest.pdf |binary
vignettes/figs/adephylo-figFourBas.pdf |binary
vignettes/figs/adephylo-lm1.pdf |binary
vignettes/figs/adephylo-loadings.pdf |binary
vignettes/figs/adephylo-orthobas1.pdf |binary
vignettes/figs/adephylo-pca1.pdf |binary
vignettes/figs/adephylo-pca2.pdf |binary
vignettes/figs/adephylo-phylo4d.pdf |binary
vignettes/figs/adephylo-resid.pdf |binary
29 files changed, 46 insertions(+), 44 deletions(-)
Title: Intermediate the communication between Vim and R
Diff between vimcom versions 0.9-91 dated 2013-11-01 and 0.9-92 dated 2013-11-30
Description: Provide a service to intermediate the communication between Vim and R.
Author: Jakson Aquino
Maintainer: Jakson Alves de Aquino
DESCRIPTION | 8 +-
MD5 | 22 ++++----
NAMESPACE | 4 +
NEWS | 9 +++
R/vimbol.R | 73 +++++++++++++++++++++++++--
R/vimcom.R | 7 ++
R/vimhelp.R | 19 ++++++-
configure | 18 +++---
configure.ac | 2
man/vim.buildomnils.Rd |only
man/vim.pager.Rd |only
man/vimcom-package.Rd | 3 -
src/vimcom.c | 131 ++++++++++++++++++++++++++++++++++---------------
13 files changed, 225 insertions(+), 71 deletions(-)
Title: Rcpp bindings for NumPy files
Diff between RcppCNPy versions 0.2.1 dated 2013-11-28 and 0.2.2 dated 2013-11-30
Description: This package use the cnpy library written by Carl Rogers to
provide read and write facilities for files created with (or for) the NumPy
extension for Python. Vectors and matrices of numeric types can be read or
written to and from files as well as compressed files. Support for integer
files is available if the package has been built with -std=c++0x or
-std=c++11 which is needed to support 'long long int' types.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel
ChangeLog | 10 ++++++++++
DESCRIPTION | 8 ++++----
MD5 | 12 +++++++-----
inst/NEWS.Rd | 10 ++++++++++
inst/doc/RcppCNPy-intro.pdf |binary
src/cnpy.cpp | 8 ++++----
tests/saveAndLoad.R |only
tests/saveAndLoad.Rout.save |only
8 files changed, 35 insertions(+), 13 deletions(-)
Title: A suite of functions to back-fit fixed effects and forward-fit
random effects, as well as other miscellaneous functions.
Diff between LMERConvenienceFunctions versions 2.1 dated 2013-09-24 and 2.4 dated 2013-11-30
More information about LMERConvenienceFunctions at CRAN
Description: Functions to back-fit fixed effects (on F or t values as well as log-likelihood ratio testing (llrt), AIC, BIC, relLik.AIC or relLik.BIC) and to forward-fit random effects (using log-likelihood ratio testing). NOTE that the back- and forward-fitting of generalized linear mixed-effects regression (glmer) models is now supported by functions ``bfFixefLMER_t.fnc'' and ``ffRanefLMER.fnc''. The package also includes a function to compute ANOVAs with upper- and lower-bound p-values (anti-conservative and conservative, respectively), a function to graph model criticism plots, functions to trim data on model residuals or on a response variable (per subject), a function to perform posthoc analyses (with or without MCMC p-values), a function to generate summaries of mcposthoc objects, a function to generate (dynamic) 3d plots of (i) predicted values of an LMER model for interactions between two numeric variables,(ii) the raw data as a function of two numeric variable, and (iii) kernel density estimates (densities) of two numeric variables, and finally a function to calculate the relative log-likelihood between two models. Also, as of version 2.4, the package gains function ``plotLMER.fnc'' (revived from archived package ``languageR'').
Author: Antoine Tremblay, Dalhousie University, and Johannes Ransijn, University of Copenhagen
Maintainer: "Antoine Tremblay, Dalhousie University"
LMERConvenienceFunctions-2.1/LMERConvenienceFunctions/R/bFixefLMER_F.fnc.R |only
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/DESCRIPTION | 12
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/MD5 | 44
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/NAMESPACE | 21
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/NEWS | 13
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/R/bfFixefLMER_F.fnc.R | 723 +++-------
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/R/bfFixefLMER_t.fnc.R | 211 +-
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/R/degreesOrKnots.fnc.R |only
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/R/ffRanefLMER.fnc.R | 19
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/R/fitLMER.fnc.R | 3
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/R/mcp.fnc.R | 8
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/R/mcposthoc.fnc.R | 286 +--
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/R/pamer.fnc.R | 80 -
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/R/plotLMER.fnc.R |only
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/R/plotLMER3d.fnc.R | 194 +-
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/man/LMERConvenienceFunctions-package.Rd | 102 +
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/man/bfFixefLMER_F.fnc.Rd | 163 +-
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/man/bfFixefLMER_t.fnc.Rd | 6
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/man/ffRanefLMER.fnc.Rd | 11
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/man/fitLMER.fnc.Rd | 23
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/man/mcp.fnc.Rd | 6
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/man/mcposthoc.fnc.Rd | 4
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/man/plotLMER.fnc.Rd |only
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/man/plotLMER3d.fnc.Rd | 1
LMERConvenienceFunctions-2.4/LMERConvenienceFunctions/man/relLik.Rd | 4
25 files changed, 933 insertions(+), 1001 deletions(-)
Permanent link
More information about DynamicDistribution at CRAN
Permanent link