Title: Exploratory analysis with the singular value decomposition.
Diff between ExPosition versions 2.1.3 dated 2013-06-15 and 2.8.19 dated 2013-12-10
Description: ExPosition is for descriptive (i.e., fixed-effects) multivariate analysis with the singular value decomposition.
Author: Derek Beaton, Cherise R. Chin Fatt, Herve Abdi
Maintainer: Derek Beaton
ExPosition-2.1.3/ExPosition/R/PDQ.R |only
ExPosition-2.1.3/ExPosition/R/basePDQ.R |only
ExPosition-2.8.19/ExPosition/DESCRIPTION | 14
ExPosition-2.8.19/ExPosition/MD5 | 87 ++-
ExPosition-2.8.19/ExPosition/NAMESPACE | 2
ExPosition-2.8.19/ExPosition/R/acknowledgements.R | 25 -
ExPosition-2.8.19/ExPosition/R/caNorm.R | 6
ExPosition-2.8.19/ExPosition/R/caSupplementalElementsPreProcessing.R | 16
ExPosition-2.8.19/ExPosition/R/computeConstraints.R | 4
ExPosition-2.8.19/ExPosition/R/coreCA.R | 47 -
ExPosition-2.8.19/ExPosition/R/coreMDS.R | 17
ExPosition-2.8.19/ExPosition/R/corePCA.R | 53 --
ExPosition-2.8.19/ExPosition/R/epGPCA.R | 2
ExPosition-2.8.19/ExPosition/R/epGraphs.R | 237 +++++-----
ExPosition-2.8.19/ExPosition/R/epMCA.R | 1
ExPosition-2.8.19/ExPosition/R/epMDS.R | 5
ExPosition-2.8.19/ExPosition/R/expo.scale.R | 27 -
ExPosition-2.8.19/ExPosition/R/genPDQ.R | 71 ++
ExPosition-2.8.19/ExPosition/R/hellingerNorm.R | 6
ExPosition-2.8.19/ExPosition/R/hellingerSupplementaryColsPreProcessing.R |only
ExPosition-2.8.19/ExPosition/R/hellingerSupplementaryRowsPreProcessing.R |only
ExPosition-2.8.19/ExPosition/R/makeNominalData.R | 72 +--
ExPosition-2.8.19/ExPosition/R/makeRowProfiles.R | 4
ExPosition-2.8.19/ExPosition/R/mca.eigen.fix.R | 3
ExPosition-2.8.19/ExPosition/R/mdsTransform.R | 10
ExPosition-2.8.19/ExPosition/R/pickSVD.R | 6
ExPosition-2.8.19/ExPosition/R/print.epCA.R | 11
ExPosition-2.8.19/ExPosition/R/print.epGPCA.R | 6
ExPosition-2.8.19/ExPosition/R/print.epMCA.R | 13
ExPosition-2.8.19/ExPosition/R/print.epPCA.R | 10
ExPosition-2.8.19/ExPosition/R/print.epSVD.R | 9
ExPosition-2.8.19/ExPosition/R/rowNorms.R |only
ExPosition-2.8.19/ExPosition/R/supplementalProjection.R | 1
ExPosition-2.8.19/ExPosition/R/supplementaryCols.R | 37 +
ExPosition-2.8.19/ExPosition/R/supplementaryRows.R | 25 -
ExPosition-2.8.19/ExPosition/data/snps.druguse.rda |only
ExPosition-2.8.19/ExPosition/inst |only
ExPosition-2.8.19/ExPosition/man/ExPosition-package.Rd | 8
ExPosition-2.8.19/ExPosition/man/caNorm.Rd |only
ExPosition-2.8.19/ExPosition/man/caSupplementalElementsPreProcessing.Rd | 5
ExPosition-2.8.19/ExPosition/man/coreCA.Rd | 1
ExPosition-2.8.19/ExPosition/man/epGraphs.Rd | 11
ExPosition-2.8.19/ExPosition/man/epMCA.Rd | 4
ExPosition-2.8.19/ExPosition/man/genPDQ.Rd |only
ExPosition-2.8.19/ExPosition/man/hellingerNorm.Rd |only
ExPosition-2.8.19/ExPosition/man/hellingerSupplementaryColsPreProcessing.Rd |only
ExPosition-2.8.19/ExPosition/man/hellingerSupplementaryRowsPreProcessing.Rd |only
ExPosition-2.8.19/ExPosition/man/makeRowProfiles.Rd |only
ExPosition-2.8.19/ExPosition/man/mdsTransform.Rd | 4
ExPosition-2.8.19/ExPosition/man/rowNorms.Rd |only
ExPosition-2.8.19/ExPosition/man/snps.druguse.Rd |only
ExPosition-2.8.19/ExPosition/man/supplementaryCols.Rd | 2
52 files changed, 498 insertions(+), 364 deletions(-)
Title: Read, write, format Excel 2007 and Excel 97/2000/XP/2003 files
Diff between xlsx versions 0.5.1 dated 2013-05-20 and 0.5.5 dated 2013-12-10
Description: Provide R functions to read/write/format Excel 2007 and Excel 97/2000/XP/2003 file formats.
Author: Adrian A. Dragulescu
Maintainer: Adrian A. Dragulescu
xlsx-0.5.1/xlsx/WISHLIST |only
xlsx-0.5.1/xlsx/other |only
xlsx-0.5.5/xlsx/DESCRIPTION | 14
xlsx-0.5.5/xlsx/MD5 | 56 +-
xlsx-0.5.5/xlsx/NAMESPACE | 1
xlsx-0.5.5/xlsx/NEWS | 461 ++++++++++++----------
xlsx-0.5.5/xlsx/R/CellBlock.R | 23 -
xlsx-0.5.5/xlsx/R/DataFormat.R | 6
xlsx-0.5.5/xlsx/R/addDataFrame.R | 4
xlsx-0.5.5/xlsx/R/read.xlsx.R | 2
xlsx-0.5.5/xlsx/R/readColumns.R | 155 +++----
xlsx-0.5.5/xlsx/R/utilities.R | 7
xlsx-0.5.5/xlsx/R/write.xlsx.R | 6
xlsx-0.5.5/xlsx/R/write.xlsx2.R | 2
xlsx-0.5.5/xlsx/build |only
xlsx-0.5.5/xlsx/inst/doc/xlsx.pdf |binary
xlsx-0.5.5/xlsx/inst/java/rexcel-0.5.1.jar |binary
xlsx-0.5.5/xlsx/inst/tests/crash_write_xlsx.R | 10
xlsx-0.5.5/xlsx/inst/tests/lib_test_issues.R | 528 +++++++++++++++++---------
xlsx-0.5.5/xlsx/inst/tests/lib_tests_xlsx.R | 26 -
xlsx-0.5.5/xlsx/man/Cell.Rd | 17
xlsx-0.5.5/xlsx/man/CellBlock.Rd | 12
xlsx-0.5.5/xlsx/man/addDataFrame.Rd | 6
xlsx-0.5.5/xlsx/man/read.xlsx.Rd | 6
xlsx-0.5.5/xlsx/man/readColumns.Rd | 5
xlsx-0.5.5/xlsx/man/write.xlsx.Rd | 11
xlsx-0.5.5/xlsx/man/xlsx-package.Rd | 4
xlsx-0.5.5/xlsx/vignettes |only
28 files changed, 810 insertions(+), 552 deletions(-)
Title: Technical Trading Analysis
Diff between fTrading versions 2160.77 dated 2012-11-30 and 3010.78 dated 2013-12-10
Description: Environment for teaching "Financial Engineering and
Computational Finance"
Author: Diethelm Wuertz and many others, see the SOURCE file
Maintainer: Yohan Chalabi
DESCRIPTION | 7 +--
MD5 | 12 ++---
NAMESPACE | 3 -
R/TechnicalAnalysis.R | 6 --
R/rollFun.R | 101 ++++++++++++++++++++++++-------------------------
R/zzz.R | 29 ++++++--------
man/RollingAnalysis.Rd | 75 +++++++++++++++++-------------------
7 files changed, 113 insertions(+), 120 deletions(-)
Title: Random Forests for Survival, Regression and Classification
(RF-SRC)
Diff between randomForestSRC versions 1.3 dated 2013-07-22 and 1.4 dated 2013-12-10
More information about randomForestSRC at CRAN
Description: A unified treatment of Breiman's random forests for survival, regression and classification problems based on Ishwaran and Kogalur's random survival forests (RSF) package. The package runs in both serial and parallel (OpenMP) modes.
Author: Hemant Ishwaran
Maintainer: Udaya B. Kogalur
randomForestSRC-1.3/randomForestSRC/R/restore.rfsrc.R |only
randomForestSRC-1.3/randomForestSRC/man/restore.rfsrc.Rd |only
randomForestSRC-1.4/randomForestSRC/DESCRIPTION | 8
randomForestSRC-1.4/randomForestSRC/MD5 | 202 -
randomForestSRC-1.4/randomForestSRC/NAMESPACE | 2
randomForestSRC-1.4/randomForestSRC/R/data.utilities.R | 177 -
randomForestSRC-1.4/randomForestSRC/R/factor.utilities.R | 2
randomForestSRC-1.4/randomForestSRC/R/find.interaction.R | 6
randomForestSRC-1.4/randomForestSRC/R/generic.predict.rfsrc.R | 144
randomForestSRC-1.4/randomForestSRC/R/impute.rfsrc.R | 29
randomForestSRC-1.4/randomForestSRC/R/max.subtree.R | 31
randomForestSRC-1.4/randomForestSRC/R/plot.competing.risk.R | 5
randomForestSRC-1.4/randomForestSRC/R/plot.rfsrc.R | 2
randomForestSRC-1.4/randomForestSRC/R/plot.survival.R | 2
randomForestSRC-1.4/randomForestSRC/R/plot.variable.R | 31
randomForestSRC-1.4/randomForestSRC/R/predict.rfsrc.R | 2
randomForestSRC-1.4/randomForestSRC/R/print.rfsrc.R | 8
randomForestSRC-1.4/randomForestSRC/R/rf2rfz.R | 2
randomForestSRC-1.4/randomForestSRC/R/rfsrc.R | 213 -
randomForestSRC-1.4/randomForestSRC/R/rfsrc.news.R | 2
randomForestSRC-1.4/randomForestSRC/R/stat.split.R | 2
randomForestSRC-1.4/randomForestSRC/R/utilities.R | 81
randomForestSRC-1.4/randomForestSRC/R/var.select.R | 38
randomForestSRC-1.4/randomForestSRC/R/vimp.R | 9
randomForestSRC-1.4/randomForestSRC/R/zzz.R | 2
randomForestSRC-1.4/randomForestSRC/configure.ac | 2
randomForestSRC-1.4/randomForestSRC/inst/NEWS | 22
randomForestSRC-1.4/randomForestSRC/inst/doc/rsf-Rnews.pdf |binary
randomForestSRC-1.4/randomForestSRC/man/breast.Rd | 2
randomForestSRC-1.4/randomForestSRC/man/find.interaction.Rd | 2
randomForestSRC-1.4/randomForestSRC/man/follic.Rd | 2
randomForestSRC-1.4/randomForestSRC/man/impute.Rd | 59
randomForestSRC-1.4/randomForestSRC/man/max.subtree.Rd | 2
randomForestSRC-1.4/randomForestSRC/man/pbc.Rd | 2
randomForestSRC-1.4/randomForestSRC/man/plot.competing.risk.Rd | 2
randomForestSRC-1.4/randomForestSRC/man/plot.rfsrc.Rd | 2
randomForestSRC-1.4/randomForestSRC/man/plot.survival.Rd | 2
randomForestSRC-1.4/randomForestSRC/man/plot.variable.Rd | 5
randomForestSRC-1.4/randomForestSRC/man/predict.rfsrc.Rd | 70
randomForestSRC-1.4/randomForestSRC/man/randomForestSRC_package.Rd | 5
randomForestSRC-1.4/randomForestSRC/man/rf2rfz.Rd | 4
randomForestSRC-1.4/randomForestSRC/man/rfsrc.Rd | 292 +
randomForestSRC-1.4/randomForestSRC/man/var.select.Rd | 4
randomForestSRC-1.4/randomForestSRC/man/vimp.Rd | 2
randomForestSRC-1.4/randomForestSRC/man/wihs.Rd | 2
randomForestSRC-1.4/randomForestSRC/src/bootstrap.c | 4
randomForestSRC-1.4/randomForestSRC/src/bootstrap.h | 2
randomForestSRC-1.4/randomForestSRC/src/classification.c | 32
randomForestSRC-1.4/randomForestSRC/src/classification.h | 4
randomForestSRC-1.4/randomForestSRC/src/dataParser.c | 2
randomForestSRC-1.4/randomForestSRC/src/dataParser.h | 2
randomForestSRC-1.4/randomForestSRC/src/entry.c | 115
randomForestSRC-1.4/randomForestSRC/src/entry.h | 4
randomForestSRC-1.4/randomForestSRC/src/extern.h | 8
randomForestSRC-1.4/randomForestSRC/src/factor.h | 2
randomForestSRC-1.4/randomForestSRC/src/factorOps.c | 2
randomForestSRC-1.4/randomForestSRC/src/factorOps.h | 2
randomForestSRC-1.4/randomForestSRC/src/global.h | 71
randomForestSRC-1.4/randomForestSRC/src/importance.c | 112
randomForestSRC-1.4/randomForestSRC/src/importance.h | 21
randomForestSRC-1.4/randomForestSRC/src/impute.c | 1525 ++++------
randomForestSRC-1.4/randomForestSRC/src/impute.h | 21
randomForestSRC-1.4/randomForestSRC/src/node.h | 15
randomForestSRC-1.4/randomForestSRC/src/nodeOps.c | 47
randomForestSRC-1.4/randomForestSRC/src/nodeOps.h | 2
randomForestSRC-1.4/randomForestSRC/src/nrutil.c | 28
randomForestSRC-1.4/randomForestSRC/src/nrutil.h | 2
randomForestSRC-1.4/randomForestSRC/src/random.c | 62
randomForestSRC-1.4/randomForestSRC/src/random.h | 14
randomForestSRC-1.4/randomForestSRC/src/regression.c | 34
randomForestSRC-1.4/randomForestSRC/src/regression.h | 4
randomForestSRC-1.4/randomForestSRC/src/rfsrc.c | 160 -
randomForestSRC-1.4/randomForestSRC/src/rfsrc.h | 2
randomForestSRC-1.4/randomForestSRC/src/rfsrcUtil.c | 96
randomForestSRC-1.4/randomForestSRC/src/rfsrcUtil.h | 3
randomForestSRC-1.4/randomForestSRC/src/split.c | 287 +
randomForestSRC-1.4/randomForestSRC/src/split.h | 17
randomForestSRC-1.4/randomForestSRC/src/splitClas.c | 172 -
randomForestSRC-1.4/randomForestSRC/src/splitClas.h | 22
randomForestSRC-1.4/randomForestSRC/src/splitRegr.c | 610 +++-
randomForestSRC-1.4/randomForestSRC/src/splitRegr.h | 61
randomForestSRC-1.4/randomForestSRC/src/splitSurv.c | 233 -
randomForestSRC-1.4/randomForestSRC/src/splitSurv.h | 27
randomForestSRC-1.4/randomForestSRC/src/splitUspv.c |only
randomForestSRC-1.4/randomForestSRC/src/splitUspv.h |only
randomForestSRC-1.4/randomForestSRC/src/splitUtil.c | 108
randomForestSRC-1.4/randomForestSRC/src/splitUtil.h | 41
randomForestSRC-1.4/randomForestSRC/src/stack.c | 149
randomForestSRC-1.4/randomForestSRC/src/stack.h | 32
randomForestSRC-1.4/randomForestSRC/src/stackOutput.c | 395 +-
randomForestSRC-1.4/randomForestSRC/src/stackOutput.h | 29
randomForestSRC-1.4/randomForestSRC/src/stackPreDefined.c | 182 -
randomForestSRC-1.4/randomForestSRC/src/stackPreDefined.h | 2
randomForestSRC-1.4/randomForestSRC/src/survival.c | 2
randomForestSRC-1.4/randomForestSRC/src/survival.h | 2
randomForestSRC-1.4/randomForestSRC/src/survivalE.c | 2
randomForestSRC-1.4/randomForestSRC/src/survivalE.h | 2
randomForestSRC-1.4/randomForestSRC/src/terminal.h | 6
randomForestSRC-1.4/randomForestSRC/src/trace.c | 5
randomForestSRC-1.4/randomForestSRC/src/trace.h | 7
randomForestSRC-1.4/randomForestSRC/src/tree.c | 256 +
randomForestSRC-1.4/randomForestSRC/src/tree.h | 2
randomForestSRC-1.4/randomForestSRC/src/treeUtil.c | 163 -
randomForestSRC-1.4/randomForestSRC/src/treeUtil.h | 31
104 files changed, 3913 insertions(+), 2813 deletions(-)
Permanent link
Title: R package for parallelized mRMR ensemble feature selection
Diff between mRMRe versions 2.0.3 dated 2013-12-10 and 2.0.4 dated 2013-12-10
Description: This package contains a set of function to compute mutual information matrices from continuous, categorical and survival variables. It also contains function to perform feature selection with mRMR and a new ensemble mRMR technique.
Author: Nicolas De Jay, Simon Papillon-Cavanagh, Catharina Olsen, Gianluca Bontempi, Benjamin Haibe-Kains
Maintainer: Benjamin Haibe-Kains
.Rinstignore | 6 ++----
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
R/generics.R | 6 +++---
R/mRMRe.Data.R | 4 ++--
R/mRMRe.Filter.R | 8 ++++----
inst/doc/mRMRe.pdf |binary
7 files changed, 20 insertions(+), 22 deletions(-)
Title: Linear mixed models
Diff between lmm versions 0.7 dated 2013-09-27 and 0.9 dated 2013-12-10
Description: Some improved procedures for linear mixed models
Author: Joseph L. Schafer
Maintainer: Jing hua Zhao
lmm-0.7/lmm/inst/doc/improve.pdf |only
lmm-0.9/lmm/ChangeLog | 10 ++++++++++
lmm-0.9/lmm/DESCRIPTION | 9 ++++-----
lmm-0.9/lmm/LICENSE | 6 ++----
lmm-0.9/lmm/MD5 | 11 ++++++-----
lmm-0.9/lmm/inst/doc/lmm-tr.pdf |binary
lmm-0.9/lmm/vignettes |only
7 files changed, 22 insertions(+), 14 deletions(-)
Title: An Interface to WinBUGS/OpenBUGS/JAGS by gWidgets
Diff between iBUGS versions 0.1.3 dated 2013-03-29 and 0.1.4 dated 2013-12-10
Description: This package has provided an interface to WinBUGS/OpenBUGS/JAGS
via R2WinBUGS and R2jags. Some options will be intelligently guessed, e.g.
the path to WinBUGS/OpenBUGS/JAGS and the data/parameter list. Users can
specify all the options in a GUI.
Author: Yihui Xie and Jiebiao Wang
Maintainer: Jiebiao Wang
iBUGS-0.1.3/iBUGS/inst/doc/Makefile |only
iBUGS-0.1.3/iBUGS/inst/doc/figure |only
iBUGS-0.1.3/iBUGS/inst/doc/iBUGS.bib |only
iBUGS-0.1.3/iBUGS/inst/doc/iBUGS.lyx |only
iBUGS-0.1.4/iBUGS/DESCRIPTION | 18 ++++++--------
iBUGS-0.1.4/iBUGS/MD5 | 20 ++++++++--------
iBUGS-0.1.4/iBUGS/build |only
iBUGS-0.1.4/iBUGS/inst/doc/iBUGS.pdf |binary
iBUGS-0.1.4/iBUGS/man/bugs.options.Rd | 28 +++++++++++-----------
iBUGS-0.1.4/iBUGS/man/iBUGS.Rd | 42 +++++++++++++++++-----------------
iBUGS-0.1.4/iBUGS/vignettes |only
11 files changed, 54 insertions(+), 54 deletions(-)
Title: A generalization of the Dirichlet distribution
Diff between hyperdirichlet versions 1.4-8 dated 2013-02-11 and 1.4-9 dated 2013-12-10
More information about hyperdirichlet at CRAN
Description: A suite of routines for the hyperdirichlet distribution
Author: Robin K.S. Hankin
Maintainer: Robin K. S. Hankin
hyperdirichlet-1.4-8/hyperdirichlet/vignettes/correspondence.R |only
hyperdirichlet-1.4-8/hyperdirichlet/vignettes/hyperdirichlet.R |only
hyperdirichlet-1.4-9/hyperdirichlet/DESCRIPTION | 11 ++-
hyperdirichlet-1.4-9/hyperdirichlet/MD5 | 29 +++++-----
hyperdirichlet-1.4-9/hyperdirichlet/NAMESPACE | 6 ++
hyperdirichlet-1.4-9/hyperdirichlet/build |only
hyperdirichlet-1.4-9/hyperdirichlet/data/doubles.rda |binary
hyperdirichlet-1.4-9/hyperdirichlet/data/paulino.rda |binary
hyperdirichlet-1.4-9/hyperdirichlet/data/pollen.rda |binary
hyperdirichlet-1.4-9/hyperdirichlet/data/serum.rda |binary
hyperdirichlet-1.4-9/hyperdirichlet/data/volleyball.rda |binary
hyperdirichlet-1.4-9/hyperdirichlet/inst/doc/correspondence.R |only
hyperdirichlet-1.4-9/hyperdirichlet/inst/doc/correspondence.pdf |binary
hyperdirichlet-1.4-9/hyperdirichlet/inst/doc/hyperdirichlet.R |only
hyperdirichlet-1.4-9/hyperdirichlet/inst/doc/hyperdirichlet.Rnw | 28 ++++-----
hyperdirichlet-1.4-9/hyperdirichlet/inst/doc/hyperdirichlet.pdf |binary
hyperdirichlet-1.4-9/hyperdirichlet/man/hyperdirichlet.Rd | 6 +-
hyperdirichlet-1.4-9/hyperdirichlet/vignettes/hyperdirichlet.Rnw | 28 ++++-----
18 files changed, 60 insertions(+), 48 deletions(-)
Permanent link
Title: wrapper for the Gnu Scientific Library
Diff between gsl versions 1.9-9 dated 2011-09-08 and 1.9-10 dated 2013-12-10
Description:
An R wrapper for the special functions and quasi random number
generators of the Gnu Scientific Library
(http://www.gnu.org/software/gsl/). See gsl-package.Rd for details of
overall package organization, and Misc.Rd for some functions that are
widely used in the package, and some tips on installation.
Author: Robin K. S. Hankin; qrng functions by Duncan Murdoch and
multimin by Andrew Clausen
Maintainer: Robin K. S. Hankin
gsl-1.9-10/gsl/DESCRIPTION | 21 +++++++++++----------
gsl-1.9-10/gsl/INSTALL |only
gsl-1.9-10/gsl/MD5 | 25 ++++++++++++++-----------
gsl-1.9-10/gsl/build |only
gsl-1.9-10/gsl/cleanup | 6 +++---
gsl-1.9-10/gsl/inst/doc/gslpaper.R |only
gsl-1.9-10/gsl/inst/doc/gslpaper.pdf |binary
gsl-1.9-10/gsl/man/Bessel.Rd | 11 ++++++++---
gsl-1.9-10/gsl/man/Coulomb.Rd | 14 ++++++++++----
gsl-1.9-10/gsl/man/Coupling.Rd | 3 ++-
gsl-1.9-10/gsl/man/Expint.Rd | 4 +++-
gsl-1.9-10/gsl/man/Gegenbauer.Rd | 5 +++--
gsl-1.9-10/gsl/man/Laguerre.Rd | 4 +++-
gsl-1.9-10/gsl/vignettes |only
gsl-1.9-9/gsl/inst/doc/gsl.bib |only
gsl-1.9-9/gsl/src/Makevars |only
16 files changed, 57 insertions(+), 36 deletions(-)
Title: Plot Conics
Diff between conics versions 0.2 dated 2012-10-27 and 0.3 dated 2013-12-10
Description: plot conics (ellipses, hyperbolas, parabolas)
Author: Bernard Desgraupes (University of Paris Ouest - Lab Modal'X)
Maintainer: Bernard Desgraupes
DESCRIPTION | 12 ++---
MD5 | 25 +++++++----
R/main.R | 103 ++++++++++++++++++++++++++++++++++++++-----------
build |only
inst/doc/conics.R |only
inst/doc/conics.Rnw | 35 +++++++++++++---
inst/doc/conics.pdf |binary
man/conicAsymptotes.Rd | 2
man/conicAxes.Rd | 2
man/conicCenter.Rd | 2
man/conicMatrix.Rd | 2
man/conicPlot.Rd | 20 ++++++---
man/conics-package.Rd | 6 +-
vignettes |only
14 files changed, 152 insertions(+), 57 deletions(-)
Title: R interface for fisheries data
Diff between rfisheries versions 0.0.5 dated 2013-11-13 and 0.0.6 dated 2013-12-10
Description: A programmatic interface to openfisheries.org. This package is
part of the rOpenSci suite (http://ropensci.org)
Author: Karthik Ram [aut, cre],
Carl Boettiger [aut],
Andrew Dyck [aut]
Maintainer: Karthik Ram
rfisheries-0.0.5/rfisheries/man/country_codes.Rd |only
rfisheries-0.0.5/rfisheries/man/landings.Rd |only
rfisheries-0.0.5/rfisheries/man/species_codes.Rd |only
rfisheries-0.0.6/rfisheries/DESCRIPTION | 12 +-
rfisheries-0.0.6/rfisheries/MD5 | 32 ++++---
rfisheries-0.0.6/rfisheries/NAMESPACE | 24 ++++-
rfisheries-0.0.6/rfisheries/NEWS | 7 +
rfisheries-0.0.6/rfisheries/R/country_codes.R | 28 ++++--
rfisheries-0.0.6/rfisheries/R/fisheries_extras.R |only
rfisheries-0.0.6/rfisheries/R/landings.R | 39 +++++----
rfisheries-0.0.6/rfisheries/R/rfisheries_package.R |only
rfisheries-0.0.6/rfisheries/R/species_codes.R | 48 ++++++-----
rfisheries-0.0.6/rfisheries/README.md | 52 ++++++++++--
rfisheries-0.0.6/rfisheries/data |only
rfisheries-0.0.6/rfisheries/inst/tests/test-rfisheries.R | 25 ++++-
rfisheries-0.0.6/rfisheries/man/country_code_data.Rd |only
rfisheries-0.0.6/rfisheries/man/country_codes-deprecated.Rd |only
rfisheries-0.0.6/rfisheries/man/fish_plot.Rd |only
rfisheries-0.0.6/rfisheries/man/of_country_codes.Rd |only
rfisheries-0.0.6/rfisheries/man/of_landings.Rd |only
rfisheries-0.0.6/rfisheries/man/of_species_codes.Rd |only
rfisheries-0.0.6/rfisheries/man/rfisheries-deprecated.Rd |only
rfisheries-0.0.6/rfisheries/man/species_code_data.Rd |only
rfisheries-0.0.6/rfisheries/man/species_codes-deprecated.Rd |only
24 files changed, 189 insertions(+), 78 deletions(-)
Title: Psychometric Mixture Models
Diff between psychomix versions 1.0-0 dated 2012-05-14 and 1.1-0 dated 2013-12-10
Description: Psychometric mixture models based on flexmix infrastructure. At the moment Rasch mixture models
with different parametrizations of the score distribution (saturated vs. mean/variance specification)
and Bradley-Terry mixture models are implemented. Both mixture models can be estimated with or without
concomitant variables. See vignette("raschmix", package = "psychomix") for details on the Rasch mixture
models.
Author: Hannah Frick [aut, cre],
Carolin Strobl [aut],
Friedrich Leisch [aut],
Achim Zeileis [aut]
Maintainer: Hannah Frick
psychomix-1.0-0/psychomix/R/refit.R |only
psychomix-1.1-0/psychomix/DESCRIPTION | 49 -
psychomix-1.1-0/psychomix/MD5 | 52 -
psychomix-1.1-0/psychomix/NAMESPACE | 3
psychomix-1.1-0/psychomix/NEWS | 14
psychomix-1.1-0/psychomix/R/allClasses.R | 5
psychomix-1.1-0/psychomix/R/allGenerics.R | 6
psychomix-1.1-0/psychomix/R/btmix.R | 20
psychomix-1.1-0/psychomix/R/raschmix.R | 348 ++++++---
psychomix-1.1-0/psychomix/R/raschmixMethods.R | 37
psychomix-1.1-0/psychomix/R/raschmixPlot.R | 47 -
psychomix-1.1-0/psychomix/build |only
psychomix-1.1-0/psychomix/inst/doc/raschmix.R |only
psychomix-1.1-0/psychomix/inst/doc/raschmix.Rnw | 3
psychomix-1.1-0/psychomix/inst/doc/raschmix.pdf |binary
psychomix-1.1-0/psychomix/inst/doc/scores.R |only
psychomix-1.1-0/psychomix/inst/doc/scores.Rnw |only
psychomix-1.1-0/psychomix/inst/doc/scores.pdf |only
psychomix-1.1-0/psychomix/inst/doc/scoresim.rda |only
psychomix-1.1-0/psychomix/man/btmix.Rd | 24
psychomix-1.1-0/psychomix/man/effectsplot.Rd | 3
psychomix-1.1-0/psychomix/man/raschmix.Rd | 29
psychomix-1.1-0/psychomix/man/raschmixClass.Rd | 1
psychomix-1.1-0/psychomix/tests/Examples/psychomix-Ex.Rout.save | 302 --------
psychomix-1.1-0/psychomix/tests/test.R | 5
psychomix-1.1-0/psychomix/tests/test.Rout.save | 24
psychomix-1.1-0/psychomix/vignettes/.install_extras |only
psychomix-1.1-0/psychomix/vignettes/psychomix.bib | 377 ++++++++--
psychomix-1.1-0/psychomix/vignettes/raschmix.Rnw | 3
psychomix-1.1-0/psychomix/vignettes/raschmix.Rout.save | 15
psychomix-1.1-0/psychomix/vignettes/scores.Rnw |only
psychomix-1.1-0/psychomix/vignettes/scores.Rout.save |only
psychomix-1.1-0/psychomix/vignettes/scoresim.rda |only
33 files changed, 820 insertions(+), 547 deletions(-)
Title: Bayesian Fractional Polynomials
Diff between bfp versions 0.0-25 dated 2012-05-30 and 0.0-27 dated 2013-12-10
Description: The package implements the Bayesian paradigm for fractional
polynomial models under the assumption of normally distributed error terms.
Author: Daniel Sabanes Bove
Maintainer: Daniel Sabanes Bove
bfp-0.0-25/bfp/examples |only
bfp-0.0-27/bfp/ChangeLog | 10 ++++++++++
bfp-0.0-27/bfp/DESCRIPTION | 17 +++++++++--------
bfp-0.0-27/bfp/MD5 | 12 ++++++------
bfp-0.0-27/bfp/data/ozone.RData |binary
bfp-0.0-27/bfp/inst/examples |only
bfp-0.0-27/bfp/man/constructNewdataMatrix.Rd | 5 +++--
bfp-0.0-27/bfp/src/dataStructure.h | 2 +-
8 files changed, 29 insertions(+), 17 deletions(-)
Title: A swiss army knife for population genetic & genomic analysis
Diff between PopGenome versions 1.2.6 dated 2013-10-26 and 1.3.0 dated 2013-12-10
Description: PopGenome is an R-package for Population Genetic & Genomic Analysis
Author: Bastian Pfeifer, Ulrich Wittelsbuerger
Maintainer: Bastian Pfeifer
PopGenome-1.2.6/PopGenome/inst/doc/An_introduction_to_the_PopGenome_package.R |only
PopGenome-1.2.6/PopGenome/inst/doc/Integration_of_new_Methods.R |only
PopGenome-1.3.0/PopGenome/DESCRIPTION | 8
PopGenome-1.3.0/PopGenome/MD5 | 86 +-
PopGenome-1.3.0/PopGenome/NAMESPACE | 5
PopGenome-1.3.0/PopGenome/NEWS | 19
PopGenome-1.3.0/PopGenome/R/MS.R | 4
PopGenome-1.3.0/PopGenome/R/MS_getStats.R |only
PopGenome-1.3.0/PopGenome/R/PopGplot.R |only
PopGenome-1.3.0/PopGenome/R/calc.R2.R | 2
PopGenome-1.3.0/PopGenome/R/calc_diversities.R | 5
PopGenome-1.3.0/PopGenome/R/coalsim.R | 22
PopGenome-1.3.0/PopGenome/R/codonise64.R | 3
PopGenome-1.3.0/PopGenome/R/codontable.R | 2
PopGenome-1.3.0/PopGenome/R/get.codons.R | 75 +
PopGenome-1.3.0/PopGenome/R/get_data.R | 4
PopGenome-1.3.0/PopGenome/R/getsyn.R | 4
PopGenome-1.3.0/PopGenome/R/read.big.fasta.R | 24
PopGenome-1.3.0/PopGenome/R/read.big.ms.output.R |only
PopGenome-1.3.0/PopGenome/R/readData.R | 18
PopGenome-1.3.0/PopGenome/R/readMS.R | 28
PopGenome-1.3.0/PopGenome/R/readVCF.R | 23
PopGenome-1.3.0/PopGenome/build |only
PopGenome-1.3.0/PopGenome/inst/doc/An_introduction_to_the_PopGenome_package.Rnw | 382 +++++++---
PopGenome-1.3.0/PopGenome/inst/doc/An_introduction_to_the_PopGenome_package.pdf |binary
PopGenome-1.3.0/PopGenome/inst/doc/Integration_of_new_Methods.pdf |binary
PopGenome-1.3.0/PopGenome/man/GENOME-class.Rd | 1
PopGenome-1.3.0/PopGenome/man/MS.Rd | 3
PopGenome-1.3.0/PopGenome/man/MS_getStats.Rd |only
PopGenome-1.3.0/PopGenome/man/PopGplot.Rd |only
PopGenome-1.3.0/PopGenome/man/codontable.Rd |only
PopGenome-1.3.0/PopGenome/man/get.codons-methods.Rd | 39 -
PopGenome-1.3.0/PopGenome/man/read.big.fasta.Rd | 16
PopGenome-1.3.0/PopGenome/man/readData.Rd | 6
PopGenome-1.3.0/PopGenome/man/readMS.Rd | 3
PopGenome-1.3.0/PopGenome/man/readVCF.Rd | 19
PopGenome-1.3.0/PopGenome/man/set.synnonsyn-methods.Rd | 6
PopGenome-1.3.0/PopGenome/src/Makevars | 30
PopGenome-1.3.0/PopGenome/src/Makevars.win | 30
PopGenome-1.3.0/PopGenome/src/ap_pop_C.c | 1
PopGenome-1.3.0/PopGenome/src/dummy.cc |only
PopGenome-1.3.0/PopGenome/src/get_dim_fasta.c | 120 ++-
PopGenome-1.3.0/PopGenome/src/get_ind_fasta.c | 1
PopGenome-1.3.0/PopGenome/src/my_unique_C.c | 2
PopGenome-1.3.0/PopGenome/src/tabix/bgzf.c | 4
PopGenome-1.3.0/PopGenome/src/tabix/bgzf.h | 4
PopGenome-1.3.0/PopGenome/src/tabix/ksort.h | 2
PopGenome-1.3.0/PopGenome/src/whopgenome/whopgen_codemat.cpp | 353 +++++++++
PopGenome-1.3.0/PopGenome/vignettes/An_introduction_to_the_PopGenome_package.Rnw | 382 +++++++---
49 files changed, 1387 insertions(+), 349 deletions(-)
Title: Simulating Data to Study Performance of Clustering Algorithms
Diff between MixSim versions 1.0-8 dated 2012-11-07 and 1.0-9 dated 2013-12-10
Description: MixSim allows simulating mixtures of Gaussian
distributions with different levels of overlap between mixture
components. Pairwise overlap, defined as a sum of two
misclassification probabilities, measures the degree of
interaction between components and can be readily employed to
control the clustering complexity of datasets simulated from
mixtures. These datasets can then be used for systematic
performance investigation of clustering and finite mixture
modeling algorithms. Among other capabilities of MixSim, there
are computing the exact overlap for Gaussian mixtures,
simulating Gaussian and non-Gaussian data, simulating outliers
and noise variables, calculating various measures of agreement
between two partitionings, and constructing parallel
distribution plots for the graphical display of finite mixture
models.
Author: Volodymyr Melnykov [aut, cre],
Wei-Chen Chen [aut],
Ranjan Maitra [aut]
Maintainer: Volodymyr Melnykov
ChangeLog | 2
DESCRIPTION | 20 +++--
MD5 | 10 +-
R/zzz.R | 22 ++++--
src/libAdjRand.c | 28 ++++---
src/libMatrix.c | 195 +++++++++++++++++++++++++++----------------------------
6 files changed, 149 insertions(+), 128 deletions(-)
Title: R tools for making it easier to combine and clean data sets.
Diff between DataCombine versions 0.1.10 dated 2013-12-02 and 0.1.11 dated 2013-12-10
Description: R tools for combining and cleaning data sets, including filling in
missing observations with data from another data frame and creating
lag/lead variables.
Author: Christopher Gandrud
Maintainer: Christopher Gandrud
DESCRIPTION | 6 +++---
MD5 | 10 +++++-----
NEWS | 6 ++++++
R/utils.R | 30 ++++++++++++++++++++++++------
README.md | 2 +-
man/FindReplace.Rd | 24 +++++++++++++++++++-----
6 files changed, 58 insertions(+), 20 deletions(-)
Title: State space models
Diff between SSsimple versions 0.6.1 dated 2013-04-02 and 0.6.2 dated 2013-12-10
Description: Simulate, solve state space models
Author: Dave Zes
Maintainer: Dave Zes
SSsimple-0.6.1/SSsimple/inst/doc/SSsimple.bib |only
SSsimple-0.6.1/SSsimple/inst/doc/jes.bst |only
SSsimple-0.6.2/SSsimple/.Rinstignore | 4 ++--
SSsimple-0.6.2/SSsimple/DESCRIPTION | 6 +++---
SSsimple-0.6.2/SSsimple/MD5 | 17 ++++++++++-------
SSsimple-0.6.2/SSsimple/build |only
SSsimple-0.6.2/SSsimple/inst/doc/SSsimple.R |only
SSsimple-0.6.2/SSsimple/inst/doc/SSsimple.Snw | 2 +-
SSsimple-0.6.2/SSsimple/inst/doc/SSsimple.pdf |binary
SSsimple-0.6.2/SSsimple/man/SS.solve.SMW.Rd | 2 +-
SSsimple-0.6.2/SSsimple/man/SSsimple-package.Rd | 4 ++--
SSsimple-0.6.2/SSsimple/vignettes |only
12 files changed, 19 insertions(+), 16 deletions(-)
Title: Calculate ANSI S3.5-1997 Speech Intelligibility Index
Diff between SII versions 1.0.2 dated 2011-09-02 and 1.0.3 dated 2013-12-10
Description:
This package calculates ANSI S3.5-1997 Speech Intelligibility Index
(SII), a standard method for computing the intelligibility of
speech from acoustical measurements of speech, noise, and hearing
thresholds. This package includes data frames corresponding to
Tables 1 - 4 in the ANSI standard as well as a function utilizing
these tables and user-provided hearing threshold and noise level
measurements to compute the SII score. The methods implemented
here extend the standard computations to allow calculation of SII
when the measured frequencies do not match those required by the
standard by applying interpolation to obtain values for the
required frequencies
--
Development of this package was funded by the Center for Bioscience
Education and Technology (CBET) of the Rochester Institute of
Technology (RIT).
Author: Gregory R. Warnes
Maintainer: Gregory R. Warnes
SII-1.0.2/SII/R/First.lib.R |only
SII-1.0.2/SII/data/sii.constants.rda |only
SII-1.0.2/SII/man/undocumented.Rd |only
SII-1.0.2/SII/test |only
SII-1.0.3/SII/ChangeLog | 61 ++++++++++++-----------------------
SII-1.0.3/SII/DESCRIPTION | 39 ++++++++++++----------
SII-1.0.3/SII/MD5 | 25 +++++++-------
SII-1.0.3/SII/NEWS | 9 ++++-
SII-1.0.3/SII/R/sii.R | 4 +-
SII-1.0.3/SII/R/sysdata.rda |only
SII-1.0.3/SII/build |only
SII-1.0.3/SII/inst/ChangeLog | 61 ++++++++++++-----------------------
SII-1.0.3/SII/inst/NEWS | 9 ++++-
SII-1.0.3/SII/inst/doc/SII.R |only
SII-1.0.3/SII/inst/doc/SII.Rnw | 25 ++++++--------
SII-1.0.3/SII/inst/doc/SII.pdf |binary
SII-1.0.3/SII/tests |only
SII-1.0.3/SII/vignettes |only
18 files changed, 108 insertions(+), 125 deletions(-)
Title: Nonparametric Missing Value Imputation using Random Forest
Diff between missForest versions 1.3 dated 2012-06-26 and 1.3-1 dated 2013-12-10
Description: The function 'missForest' in this package is used to
impute missing values particularly in the case of mixed-type
data. It uses a random forest trained on the observed values of
a data matrix to predict the missing values. It can be used to
impute continuous and/or categorical data including complex
interactions and non-linear relations. It yields an out-of-bag
(OOB) imputation error estimate without the need of a test set
or elaborate cross-validation.
Author: Daniel J. Stekhoven
Maintainer: Daniel J. Stekhoven
missForest-1.3-1/missForest/DESCRIPTION | 17 ++-
missForest-1.3-1/missForest/INDEX |only
missForest-1.3-1/missForest/MD5 | 45 ++++++----
missForest-1.3-1/missForest/NAMESPACE | 20 ++--
missForest-1.3-1/missForest/R/missForest.R |only
missForest-1.3-1/missForest/R/mixError.R |only
missForest-1.3-1/missForest/R/nrmse.R |only
missForest-1.3-1/missForest/R/prodNA.R |only
missForest-1.3-1/missForest/R/varClass.R |only
missForest-1.3-1/missForest/build |only
missForest-1.3-1/missForest/inst/CITATION |only
missForest-1.3-1/missForest/inst/doc/missForest_1.3-1.R |only
missForest-1.3-1/missForest/inst/doc/missForest_1.3-1.Rnw |only
missForest-1.3-1/missForest/inst/doc/missForest_1.3-1.pdf |only
missForest-1.3-1/missForest/tests/arguments.Rout.save | 2
missForest-1.3-1/missForest/tests/classwtArgument.Rout.save | 2
missForest-1.3-1/missForest/tests/continuous.Rout.save | 2
missForest-1.3-1/missForest/tests/cutoffArgument.Rout.save | 2
missForest-1.3-1/missForest/tests/maxiterReached.Rout.save | 2
missForest-1.3-1/missForest/tests/maxnodesArgument.Rout.save | 2
missForest-1.3-1/missForest/tests/missingClass.Rout.save | 2
missForest-1.3-1/missForest/tests/mixed.Rout.save | 2
missForest-1.3-1/missForest/tests/nodesizeArgument.Rout.save | 2
missForest-1.3-1/missForest/tests/strataArgument.Rout.save | 2
missForest-1.3-1/missForest/tests/subsamplingMissForest.Rout.save | 2
missForest-1.3-1/missForest/tests/wrongInput.Rout.save | 2
missForest-1.3-1/missForest/vignettes |only
missForest-1.3/missForest/R/library.R |only
missForest-1.3/missForest/inst/doc/.Rhistory |only
missForest-1.3/missForest/inst/doc/missForest_1.3.Rnw |only
missForest-1.3/missForest/inst/doc/missForest_1.3.pdf |only
missForest-1.3/missForest/inst/doc/myBib.bib |only
32 files changed, 58 insertions(+), 48 deletions(-)
Title: Estimation and use of the generalised (Tukey) lambda
distribution
Diff between gld versions 2.0.1 dated 2013-08-31 and 2.2 dated 2013-12-10
Description: The generalised lambda distribution, or Tukey lambda distribution,
provides a wide variety of shapes with one functional form.
This package provides random numbers, quantiles, probabilities, densities for four
different parameterisations of the distribution.
It provides density function, distribution function and Quantile-Quantile plots.
It implements a variety of estimation method for the distribution, including
diagnostic plots.
Estimation methods include the starship (all 4 parameterisations) and a number of methods
for only the FKML parameterisation. These include maximum likelihood, maximum product
of spacings, Titterington's method, L moments, Trimmed L moments and
Distributional Least Absolutes.
Author: Robert King
Maintainer: Robert King
Changelog | 11 +++
DESCRIPTION | 24 +++++---
MD5 | 33 ++++++-----
NAMESPACE | 6 +-
R/fit.fkml.R |only
R/fxgld.R | 16 ++---
R/methods.R | 15 +++--
R/plotgl.R | 6 +-
R/qqgl.R | 8 +-
R/rgld.R | 8 +-
R/starship.R | 97 +++++++++++++++++++----------------
TODO | 6 +-
man/GeneralisedLambdaDistribution.Rd | 3 -
man/StarshipClassDocs.Rd | 11 ++-
man/fit.fkml.Rd |only
man/gl.check.lambda.Rd | 8 ++
man/plot.starship.Rd | 8 ++
man/starship.Rd | 32 ++++++++---
src/fit_fkml.c |only
19 files changed, 184 insertions(+), 108 deletions(-)
Title: TDT tests for extended haplotypes
Diff between tdthap versions 1.1-6 dated 2013-04-08 and 1.1-7 dated 2013-12-10
Description: Transmission/disequilibrium tests for extended marker haplotypes
Author: David Clayton
Maintainer: Jing Hua Zhao
tdthap-1.1-6/tdthap/inst/doc/README |only
tdthap-1.1-6/tdthap/inst/doc/clayton99.pdf |only
tdthap-1.1-7/tdthap/ChangeLog | 8 ++++++++
tdthap-1.1-7/tdthap/DESCRIPTION | 11 +++++------
tdthap-1.1-7/tdthap/MD5 | 14 ++++++++------
tdthap-1.1-7/tdthap/inst/doc/tdthap-paper.R |only
tdthap-1.1-7/tdthap/inst/doc/tdthap-paper.pdf |binary
tdthap-1.1-7/tdthap/man/hap.transmit.Rd | 5 +++--
tdthap-1.1-7/tdthap/vignettes |only
9 files changed, 24 insertions(+), 14 deletions(-)
More information about VideoComparison at CRAN
Permanent link
Title: Tools for Working with Rotation Data
Diff between rotations versions 0.1 dated 2013-09-09 and 0.2 dated 2013-12-10
Description: This package implements tools for working with rotational data: it
allows simulation from the most commonly used distributions on SO(3), it
includes methods for different Bayes, mean and median type estimators for the
central orientation of a sample, it provides confidence and credible regions
for the central orientation based on those estimators and it includes a novel
visualization technique for rotation data.
Author: Bryan Stanfill
Maintainer: Bryan Stanfill
rotations-0.1/rotations/inst/tests/test_plot.R |only
rotations-0.2/rotations/DESCRIPTION | 23
rotations-0.2/rotations/MD5 | 101 -
rotations-0.2/rotations/NAMESPACE | 32
rotations-0.2/rotations/NEWS |only
rotations-0.2/rotations/R/RcppExports.R | 32
rotations-0.2/rotations/R/bayes.R |only
rotations-0.2/rotations/R/distributions.R | 15
rotations-0.2/rotations/R/estimators.R | 33
rotations-0.2/rotations/R/grid-search.R | 3
rotations-0.2/rotations/R/kappa.R | 28
rotations-0.2/rotations/R/parameterizations.R | 75
rotations-0.2/rotations/R/plot.R | 81
rotations-0.2/rotations/R/preliminary.R | 177 -
rotations-0.2/rotations/R/primatives.R |only
rotations-0.2/rotations/R/regions.R | 88
rotations-0.2/rotations/inst/REFERENCES.bib | 42
rotations-0.2/rotations/inst/include/rotations_RcppExports.h | 340 ++-
rotations-0.2/rotations/man/Arithmetic.Rd |only
rotations-0.2/rotations/man/Cayley.Rd | 8
rotations-0.2/rotations/man/Fisher.Rd | 13
rotations-0.2/rotations/man/MCMCSO3.Rd |only
rotations-0.2/rotations/man/Mises.Rd | 5
rotations-0.2/rotations/man/Q4.Rd | 30
rotations-0.2/rotations/man/SO3.Rd | 25
rotations-0.2/rotations/man/UARS.Rd | 7
rotations-0.2/rotations/man/angle.Rd | 4
rotations-0.2/rotations/man/axis.Rd | 4
rotations-0.2/rotations/man/bayes.mean.Rd |only
rotations-0.2/rotations/man/bayesCR.Rd |only
rotations-0.2/rotations/man/cayley_kappa.Rd | 11
rotations-0.2/rotations/man/center.Rd | 12
rotations-0.2/rotations/man/chang.Rd | 17
rotations-0.2/rotations/man/dist.Rd | 18
rotations-0.2/rotations/man/exp_skew.Rd | 4
rotations-0.2/rotations/man/fisher_kappa.Rd | 11
rotations-0.2/rotations/man/fisheretal.Rd | 15
rotations-0.2/rotations/man/genR.Rd | 14
rotations-0.2/rotations/man/gradient.search.Rd | 5
rotations-0.2/rotations/man/log.SO3.Rd | 8
rotations-0.2/rotations/man/mean.SO3.Rd | 7
rotations-0.2/rotations/man/median.SO3.Rd | 14
rotations-0.2/rotations/man/nickel.Rd | 12
rotations-0.2/rotations/man/package-rotations.Rd | 13
rotations-0.2/rotations/man/plot.SO3.Rd | 9
rotations-0.2/rotations/man/prentice.Rd | 20
rotations-0.2/rotations/man/project.SO3.Rd | 10
rotations-0.2/rotations/man/region.Rd | 63
rotations-0.2/rotations/man/sum_dist.Rd | 18
rotations-0.2/rotations/man/vmises_kappa.Rd | 9
rotations-0.2/rotations/man/weighted.mean.SO3.Rd | 27
rotations-0.2/rotations/man/zhang.Rd | 15
rotations-0.2/rotations/src/CppBayesFunctions.cpp |only
rotations-0.2/rotations/src/Makevars | 30
rotations-0.2/rotations/src/Makevars.win | 4
rotations-0.2/rotations/src/RcppExports.cpp | 1044 ++++++++---
56 files changed, 1757 insertions(+), 819 deletions(-)
Title: Protocol Inspection and State Machine Analysis
Diff between PRISMA versions 0.2-0 dated 2013-04-16 and 0.2-1 dated 2013-12-10
Description: The PRISMA package is capable of loading and processing huge text corpora processed with the sally toolbox (http://www.mlsec.org/sally/). sally acts as a very fast preprocessor which splits the text files into tokens or n-grams. These output files can then be read with the PRISMA package which applies testing-based token selection and has some replicate-aware, highly tuned non-negative matrix factorization and principal component analysis implementation which allows the processing of very big data sets even on desktop machines.
Author: Tammo Krueger, Nicole Kraemer
Maintainer: Tammo Krueger
PRISMA-0.2-0/PRISMA/inst/doc/PRISMA.bib |only
PRISMA-0.2-0/PRISMA/inst/doc/asap.pdf |only
PRISMA-0.2-1/PRISMA/DESCRIPTION | 19 +++++--------------
PRISMA-0.2-1/PRISMA/MD5 | 25 ++++++++++++++-----------
PRISMA-0.2-1/PRISMA/R/dimensionEstimation.R | 4 ++--
PRISMA-0.2-1/PRISMA/R/matrixFactorization.R | 4 ++--
PRISMA-0.2-1/PRISMA/R/prisma.R | 10 +++++-----
PRISMA-0.2-1/PRISMA/README.md | 4 ++--
PRISMA-0.2-1/PRISMA/build |only
PRISMA-0.2-1/PRISMA/data/asap.rda |binary
PRISMA-0.2-1/PRISMA/data/thesis.rda |binary
PRISMA-0.2-1/PRISMA/inst/doc/PRISMA.R |only
PRISMA-0.2-1/PRISMA/inst/doc/PRISMA.pdf |binary
PRISMA-0.2-1/PRISMA/man/loadPrismaData.Rd | 3 ++-
PRISMA-0.2-1/PRISMA/vignettes |only
15 files changed, 32 insertions(+), 37 deletions(-)
Title: R package for parallelized mRMR ensemble feature selection
Diff between mRMRe versions 2.0.2 dated 2013-05-23 and 2.0.3 dated 2013-12-10
Description: This package contains a set of function to compute mutual information matrices from continuous, categorical and survival variables. It also contains function to perform feature selection with mRMR and a new ensemble mRMR technique.
Author: Nicolas De Jay, Simon Papillon-Cavanagh, Catharina Olsen, Gianluca Bontempi, Benjamin Haibe-Kains
Maintainer: Benjamin Haibe-Kains
mRMRe-2.0.2/mRMRe/README |only
mRMRe-2.0.2/mRMRe/REVISIONS |only
mRMRe-2.0.2/mRMRe/TODO |only
mRMRe-2.0.2/mRMRe/inst/doc/Makefile |only
mRMRe-2.0.2/mRMRe/inst/doc/biblio.bib |only
mRMRe-2.0.2/mRMRe/test |only
mRMRe-2.0.3/mRMRe/.Rinstignore | 1 +
mRMRe-2.0.3/mRMRe/DESCRIPTION | 16 ++++++----------
mRMRe-2.0.3/mRMRe/MD5 | 19 ++++++-------------
mRMRe-2.0.3/mRMRe/build |only
mRMRe-2.0.3/mRMRe/data/cgps.rda |binary
mRMRe-2.0.3/mRMRe/inst/doc/mRMRe.pdf |binary
mRMRe-2.0.3/mRMRe/vignettes |only
13 files changed, 13 insertions(+), 23 deletions(-)
Title: Supervised and unsupervised self-organising maps
Diff between kohonen versions 2.0.12 dated 2013-10-14 and 2.0.13 dated 2013-12-10
Description: Supervised and unsupervised self-organising maps
Author: Ron Wehrens
Maintainer: Ron Wehrens
CHANGES | 9 +++++
DESCRIPTION | 6 +--
MD5 | 10 +++---
R/plot.kohonen.R | 81 ++++++++++++++++++++++++++++++++--------------------
R/predict.kohonen.R | 2 -
man/som.Rd | 4 +-
6 files changed, 70 insertions(+), 42 deletions(-)
Title: Differential analysis of RNA-seq data with Poisson mixture
models
Diff between HTSDiff versions 1.0.0 dated 2013-09-25 and 1.0.1 dated 2013-12-10
Description: This package implements a Poisson mixture model to identify differentially expressed genes from RNA-seq data.
Author: Andrea Rau, Marie-Laure Martin-Magniette, Cathy Maugis-Rabusseau
Maintainer: Andrea Rau
DESCRIPTION | 13 ++++++++-----
MD5 | 10 +++++-----
R/HTSDiff.R | 9 +++++++--
inst/NEWS | 5 +++++
man/HTSDiff-package.Rd | 4 ++--
man/HTSDiff.Rd | 3 ++-
6 files changed, 29 insertions(+), 15 deletions(-)
Title: Clustering high throughput sequencing (HTS) data
Diff between HTSCluster versions 2.0.0 dated 2013-09-25 and 2.0.1 dated 2013-12-10
Description: This package implements a Poisson mixture model to cluster observations (e.g., genes) in high throughput sequencing data. Parameter estimation is performed using either the EM or CEM algorithm, and the ICL criterion is used for model selection (i.e., to choose the number of clusters).
Author: Andrea Rau, Gilles Celeux, Marie-Laure Martin-Magniette, Cathy Maugis-Rabusseau
Maintainer: Andrea Rau
DESCRIPTION | 13 ++++++++-----
MD5 | 8 ++++----
R/PoisMixClus.R | 4 +++-
inst/NEWS | 4 +++-
man/HTSCluster-package.Rd | 4 ++--
5 files changed, 20 insertions(+), 13 deletions(-)
Title: Parse command-line arguments
Diff between GetoptLong versions 0.0.2 dated 2013-11-28 and 0.0.3 dated 2013-12-10
Description: Parsing command-line arguments by Perl module Getopt::Long.
It also provides a simple way for variable interpolation in R.
Author: Zuguang Gu
Maintainer: Zuguang Gu
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
NEWS | 8 ++++++++
R/GetoptLong.R | 3 +++
inst/doc/GetoptLong.pdf |binary
inst/doc/variable_interpolation.pdf |binary
inst/tests/test_GetoptLong.R | 2 +-
7 files changed, 22 insertions(+), 11 deletions(-)
Title: Fast Cross-Validation via Sequential Testing
Diff between CVST versions 0.2 dated 2013-04-16 and 0.2-1 dated 2013-12-10
Description: This package implements the fast cross-validation via sequential testing (CVST) procedure. CVST is an improved cross-validation procedure which uses non-parametric testing coupled with sequential analysis to determine the best parameter set on linearly increasing subsets of the data. By eliminating underperforming candidates quickly and keeping promising candidates as long as possible, the method speeds up the computation while preserving the capability of a full cross-validation. Additionally to the CVST the package contains an implementation of the ordinary k-fold cross-validation with a flexible and powerful set of helper objects and methods to handle the overall model selection process. The implementations of the Cochran's Q test with permutations and the sequential testing framework of Wald are generic and can therefore also be used in other contexts.
Author: Tammo Krueger, Mikio Braun
Maintainer: Tammo Krueger
DESCRIPTION | 26 ++++++--------------------
MD5 | 28 ++++++++++++++--------------
R/methods.R | 20 ++++++++++----------
README.md | 2 +-
man/CV.Rd | 2 +-
man/CVST-package.Rd | 2 +-
man/cochranq.test.Rd | 10 +++++++---
man/constructCVSTModel.Rd | 2 +-
man/constructData.Rd | 2 +-
man/constructLearner.Rd | 2 +-
man/constructParams.Rd | 2 +-
man/constructSequentialTest.Rd | 2 +-
man/fastCV.Rd | 2 +-
man/noisyDonoho.Rd | 2 +-
man/noisySine.Rd | 2 +-
15 files changed, 48 insertions(+), 58 deletions(-)
Title: Semiparametric Maximum likelihood Method for interactions
gene-environment in case-mother control-mother designs
Diff between SPmlficmcm versions 1.0 dated 2013-10-11 and 1.1 dated 2013-12-10
Description: Implements the method of general semiparametric maximum likelihood estimation for logistic models in case-mother control-mother designs.
Author: Moliere Nguile Makao
Maintainer: Moliere Nguile Makao
DESCRIPTION | 8 ++++----
MD5 | 18 +++++++++---------
R/Nlsysteq.R | 8 ++++----
R/Spmlficmcm.R | 19 ++++++++++---------
R/ft_likhoodCas1.R | 5 ++++-
R/ft_likhoodCasM.R | 4 ++--
man/Est.Inpar.Rd | 2 +-
man/SPmlficmcm-package.Rd | 2 +-
man/SeltcEch.Rd | 2 +-
man/Spmlficmcm.Rd | 18 ++++++++++--------
10 files changed, 46 insertions(+), 40 deletions(-)
Title: Recursive Partitioning
Diff between rpart versions 4.1-3 dated 2013-09-02 and 4.1-4 dated 2013-12-10
Description: Recursive partitioning and regression trees
Author: Terry Therneau [aut],
Beth Atkinson [aut],
Brian Ripley [aut, trl, cre] (author of R port)
Maintainer: Brian Ripley
ChangeLog | 4 ++++
DESCRIPTION | 8 ++++----
MD5 | 15 ++++++++-------
build |only
inst/doc/longintro.pdf |binary
inst/doc/usercode.pdf |binary
src/insert_split.c | 24 +++++++++++++-----------
src/node.h | 10 +++++++---
src/rpart.c | 2 +-
9 files changed, 37 insertions(+), 26 deletions(-)
Title: Patient Rule Induction Method (PRIM)
Diff between prim versions 1.0.12 dated 2011-09-26 and 1.0.13 dated 2013-12-10
Description: PRIM for bump hunting in high-dimensional data
Author: Tarn Duong
Maintainer: Tarn Duong
DESCRIPTION | 15 ++++++++-------
MD5 | 27 ++++++++++++++++-----------
NAMESPACE | 1 +
R/prim.R | 34 +++++++++++++++++++++++++++-------
inst/doc/prim-2d.R |only
inst/doc/prim-2d.Rnw | 2 +-
inst/doc/prim-2d.pdf |binary
inst/doc/prim-3d.R |only
inst/doc/prim-3d.Rnw | 20 +-------------------
inst/doc/prim-3d.pdf |binary
man/plot.prim.Rd | 4 ++--
man/prim-internal.Rd | 4 ----
man/prim-package.Rd | 3 +--
man/prim.S3methods.Rd |only
man/prim.box.Rd | 10 ----------
vignettes |only
16 files changed, 57 insertions(+), 63 deletions(-)
Title: Exchange Rate Regime Analysis
Diff between fxregime versions 1.0-2 dated 2011-11-07 and 1.0-3 dated 2013-12-10
Description: Exchange rate regression and structural change tools
for estimating, testing, dating, and monitoring
(de facto) exchange rate regimes.
Author: Achim Zeileis [aut, cre],
Ajay Shah [ctb],
Ila Patnaik [ctb],
Anmol Sethy [ctb]
Maintainer: Achim Zeileis
DESCRIPTION | 24 ++++++++++++------------
MD5 | 23 ++++++++++++++---------
NAMESPACE | 5 +++--
NEWS | 13 +++++++++++++
R/fxlm.R | 3 +--
R/fxtools.R | 10 ++--------
build |only
data/FXRatesCHF.rda |binary
inst/doc/CNY.R |only
inst/doc/CNY.pdf |binary
inst/doc/INR.R |only
inst/doc/INR.pdf |binary
man/fxtools.Rd | 6 +++---
vignettes |only
14 files changed, 48 insertions(+), 36 deletions(-)
Title: R Fortunes
Diff between fortunes versions 1.5-0 dated 2012-04-07 and 1.5-1 dated 2013-12-10
Description: R Fortunes
Author: Achim Zeileis (R code) and the R community (fortunes).
Contributions (fortunes and/or code) by Torsten Hothorn,
Peter Dalgaard, Uwe Ligges, Kevin Wright, Martin Maechler,
Kjetil Brinchmann Halvorsen, Kurt Hornik, Duncan Murdoch,
Andy Bunn, Ray Brownrigg, Roger Bivand, Spencer Graves,
Jim Lemon, Christian Kleiber, David L. Reiner,
Berton Gunter, Roger Koenker, Charles Berry, Marc Schwartz,
Michael Dewey, Ben Bolker, Peter Dunn, Sarah Goslee, Simon
Blomberg, Bill Venables, Roland Rau, Thomas Petzoldt, Rolf
Turner, Mark Leeds, Emmanuel Charpentier, Chris Evans, Paolo
Sonego, Peter Ehlers, Detlef Steuer, Tal Galili, Greg Snow,
Brian D. Ripley, Michael Sumner, David Winsemius, Liviu
Andronic, Brian Diggs, Matthieu Stigler, Michael Friendly,
Dirk Eddelbuettel, Richard M. Heiberger, Patrick Burns,
Dieter Menne, Andrie de Vries, Barry Rowlingson, Renaud
Lancelot, R. Michael Weylandt, Jon Olav Skoien, Francois
Morneau, Antony Unwin, Joshua Wiley, Terry Therneau, Bryan
Hanson, Henrik Singmann, Eduard Szoecs.
Maintainer: Achim Zeileis
DESCRIPTION | 41 ++++++++++++++++++++------------------
MD5 | 13 +++++++-----
R/fortunes.R | 7 ++++--
build |only
inst/doc/fortunes.R |only
inst/doc/fortunes.pdf |binary
inst/fortunes/fortunes.csv | 48 +++++++++++++++++++++++++++++++++++++++++++--
man/fortunes.Rd | 16 +++++++++++----
vignettes |only
9 files changed, 93 insertions(+), 32 deletions(-)
Title: Cloud Util Plots
Diff between cloudUtil versions 0.1.9 dated 2012-03-20 and 0.1.10 dated 2013-12-10
Description: Provides means of plots for comparing utilization data of compute systems.
Author: Christian Panse
Maintainer: Christian Panse
cloudUtil-0.1.10/cloudUtil/DESCRIPTION | 15 ++--
cloudUtil-0.1.10/cloudUtil/MD5 | 18 +++--
cloudUtil-0.1.10/cloudUtil/build |only
cloudUtil-0.1.10/cloudUtil/data/cloudms2.RData |binary
cloudUtil-0.1.10/cloudUtil/demo/cloudUtil.R | 5 +
cloudUtil-0.1.10/cloudUtil/inst/doc/cloudUtil.R |only
cloudUtil-0.1.10/cloudUtil/inst/doc/cloudUtil.Rnw | 71 ++++++++++++++--------
cloudUtil-0.1.10/cloudUtil/inst/doc/cloudUtil.pdf |binary
cloudUtil-0.1.10/cloudUtil/man/cloudUtilPlot.Rd | 42 +++++++++----
cloudUtil-0.1.10/cloudUtil/man/cloudms2.Rd | 23 ++++++-
cloudUtil-0.1.10/cloudUtil/vignettes |only
cloudUtil-0.1.9/cloudUtil/.BBSoptions |only
12 files changed, 121 insertions(+), 53 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-02-03 0.5-0
2009-12-24 0.4.0
2009-11-17 0.3.9
2009-03-17 0.3.2
2009-02-16 0.3.1
2009-02-12 0.2.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-04-15 1-00.10
2011-02-10 1-00.09
2011-01-04 1-00.08
2010-08-31 1-00.06
2009-11-25 1-00.05
2009-05-11 1-00.04
2008-12-04 1-00.02
2008-06-03 1-00.01
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-07-02 1.0-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-01-08 0.1-4
2011-07-25 0.1-3
2011-07-23 0.1-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-09-08 1-01.06
2012-08-21 1-01.04
2011-02-18 1-01.03.1
2009-08-20 1-01.03
2009-05-11 1-01.02
2009-01-25 1-01.01
2008-12-01 1-00.04
2008-06-11 1-00.02
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-08-31 0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-12-02 1.1.2
2011-11-28 1.1.1
2011-11-24 1.1.0
2011-11-20 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-06-19 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-03-26 1.0
Title: Simulating trees under the birth-death model
Diff between TreeSim versions 1.9 dated 2013-06-09 and 1.9.1 dated 2013-12-10
Description: The package simulates phylogenetic trees where (i) all tips are sampled at one time point or (ii) tips are sampled sequentially through time. (i) For sampling at one time point, simulations are performed under a constant-rate birth-death process, conditioned on having a fixed number of final tips (sim.bd.taxa), or a fixed age (sim.bd.age), or a fixed age and number of tips (sim.bd.taxa.age). When conditioning on the number of final tips, the method allows for shifts in rates and mass extinction events during the birth-death process (sim.rateshift.taxa).sim.bd.age (and sim.rateshift.taxa without extinction) allow the speciation rate to change in a density-dependent way. The LTT plots of the simulations can be displayed using LTT.plot, LTT.plot.gen and LTT.average.root. TreeSim further samples appropriately trees with n final tips from a set of trees generated by the common sampling algorithm stopping when a fixed number m>>n of leaves is first reached (sim.gsa.taxa). This latter method is appropriate for m-tip trees generated under a big class of models (details in the sim.gsa.taxa man page). For incomplete phylogeny, the missing speciation events can be added through simulations (corsim). (ii) sim.rateshifts.taxa is generalized to sim.bdsky.stt for serially sampled trees, where the trees are conditioned on either the number of sampled tips or the age. Furthermore, for a multitype-branching process with sequential sampling, trees on a fixed number of tips can be simulated using sim.bdtypes.stt.taxa.
Author: Tanja Stadler
Maintainer: Tanja Stadler
DESCRIPTION | 35 +++++------------------------------
MD5 | 11 ++++++-----
NAMESPACE | 5 ++---
R/age.nodes.R |only
R/cuttree.R | 39 +++++++++++++++------------------------
R/sim2.gsa.R | 10 +++++-----
man/TreeSim-package.Rd | 4 ++--
7 files changed, 35 insertions(+), 69 deletions(-)
Title: Rcpp integration for Armadillo templated linear algebra library
Diff between RcppArmadillo versions 0.3.920.3 dated 2013-11-20 and 0.3.930.1 dated 2013-12-10
Description: R and Armadillo integration using Rcpp
Armadillo is a templated C++ linear algebra library (by Conrad Sanderson)
that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
A delayed evaluation approach is employed (during compile time) to combine
several operations into one, and to reduce (or eliminate) the need for
temporaries. This is accomplished through recursive templates and template
meta-programming.
This library is useful if C++ has been decided as the language of choice
(due to speed and/or integration capabilities), rather than another language.
The RcppArmadillo package includes the header files from the templated
Armadillo library (currently version 3.920.1). Thus users do not need to
install Armadillo itself in order to use RcppArmadillo.
This Armadillo integration provides a nice illustration of the
capabilities of the Rcpp package for seamless R and C++ integration.
Armadillo is licensed under the MPL 2.0, while RcppArmadillo (the Rcpp
bindings/bridge to Armadillo) is licensed under the GNU GPL version 2
or later, as is the rest of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Dirk Eddelbuettel
RcppArmadillo-0.3.920.3/RcppArmadillo/R/SHLIB.R |only
RcppArmadillo-0.3.920.3/RcppArmadillo/R/armadillo_version.R |only
RcppArmadillo-0.3.920.3/RcppArmadillo/inst/include/armadillo_bits/typedef.hpp |only
RcppArmadillo-0.3.920.3/RcppArmadillo/inst/include/armadillo_bits/typedef_blas_int.hpp |only
RcppArmadillo-0.3.920.3/RcppArmadillo/inst/include/armadillo_bits/typedef_fixed.hpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/ChangeLog | 818 +++++-----
RcppArmadillo-0.3.930.1/RcppArmadillo/DESCRIPTION | 17
RcppArmadillo-0.3.930.1/RcppArmadillo/MD5 | 238 +-
RcppArmadillo-0.3.930.1/RcppArmadillo/NAMESPACE | 1
RcppArmadillo-0.3.930.1/RcppArmadillo/R/RcppExports.R |only
RcppArmadillo-0.3.930.1/RcppArmadillo/R/fastLm.R | 5
RcppArmadillo-0.3.930.1/RcppArmadillo/R/inline.R | 2
RcppArmadillo-0.3.930.1/RcppArmadillo/R/unit.test.R | 39
RcppArmadillo-0.3.930.1/RcppArmadillo/cleanup | 3
RcppArmadillo-0.3.930.1/RcppArmadillo/configure |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/CITATION | 12
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/NEWS.Rd | 13
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/doc/RcppArmadillo-intro.Rnw | 4
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/doc/RcppArmadillo-intro.pdf |binary
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/doc/RcppArmadillo-unitTests.pdf |binary
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/examples/fastLm.r | 2
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/RcppArmadillo.h | 16
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/RcppArmadilloConfig.h | 11
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/RcppArmadilloLapack.h.in |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo | 51
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/Base_bones.hpp | 7
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/Base_meat.hpp | 18
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/Col_meat.hpp | 24
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/Cube_bones.hpp | 15
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/Cube_meat.hpp | 241 ++
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/GenCube_meat.hpp | 10
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/Gen_meat.hpp | 10
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/Mat_bones.hpp | 8
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/Mat_meat.hpp | 298 ++-
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/Row_meat.hpp | 24
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/SizeCube_bones.hpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/SizeCube_meat.hpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/SizeMat_bones.hpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/SizeMat_meat.hpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/SpMat_bones.hpp | 18
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/SpMat_meat.hpp | 185 +-
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/arma_config.hpp | 30
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/arma_rng.hpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/arma_rng_cxx11.hpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/arma_rng_cxx98.hpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/arma_version.hpp | 6
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/atlas_wrapper.hpp | 4
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/auxlib_bones.hpp | 6
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/auxlib_meat.hpp | 163 +
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/compiler_setup.hpp | 20
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/config.hpp | 2
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/constants_compat.hpp | 1
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/debug.hpp | 50
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/diagview_bones.hpp | 4
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/diagview_meat.hpp | 42
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/distr_param.hpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/eop_aux.hpp | 187 --
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/field_bones.hpp | 10
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/field_meat.hpp | 71
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/fn_det.hpp | 124 +
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/fn_eig.hpp | 23
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/fn_elem.hpp | 16
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/fn_inplace_strans.hpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/fn_inplace_trans.hpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/fn_inv.hpp | 94 +
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/fn_max.hpp | 25
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/fn_min.hpp | 22
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/fn_misc.hpp | 49
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/fn_numel.hpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/fn_pinv.hpp | 18
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/fn_randi.hpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/fn_randn.hpp | 4
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/fn_randu.hpp | 8
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/fn_shuffle.hpp | 55
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/fn_size.hpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/fn_solve.hpp | 79
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/fn_sort.hpp | 60
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/fn_sort_index.hpp | 120 +
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/fn_sprandn.hpp | 2
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/fn_sprandu.hpp | 2
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/fn_svd.hpp | 61
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/format_wrap.hpp | 75
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/forward_bones.hpp | 2
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/glue_max_bones.hpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/glue_max_meat.hpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/glue_min_bones.hpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/glue_min_meat.hpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/memory.hpp | 27
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/mul_gemm.hpp | 8
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/mul_gemm_mixed.hpp | 6
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/mul_gemv.hpp | 2
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/mul_herk.hpp | 2
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/mul_syrk.hpp | 2
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/op_cx_scalar_meat.hpp | 133 +
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/op_diagmat_meat.hpp | 2
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/op_fft_meat.hpp | 8
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/op_htrans_bones.hpp | 20
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/op_htrans_meat.hpp | 104 -
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/op_pinv_bones.hpp | 6
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/op_pinv_meat.hpp | 74
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/op_princomp_meat.hpp | 111 -
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/op_shuffle_meat.hpp | 14
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/op_strans_bones.hpp | 9
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/op_strans_meat.hpp | 88 -
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/podarray_meat.hpp | 4
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/running_stat_bones.hpp | 16
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/running_stat_meat.hpp | 39
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/running_stat_vec_bones.hpp | 78
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/running_stat_vec_meat.hpp | 160 +
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/subview_bones.hpp | 8
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/subview_cube_bones.hpp | 2
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/subview_cube_meat.hpp | 44
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/subview_elem1_bones.hpp | 6
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/subview_elem1_meat.hpp | 98 +
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/subview_meat.hpp | 188 ++
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/typedef_elem.hpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/typedef_elem_check.hpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/typedef_mat.hpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/typedef_mat_fixed.hpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/wall_clock_bones.hpp | 9
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/wall_clock_meat.hpp | 23
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/skeleton/Makevars | 1
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/skeleton/Makevars.win | 7
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/unitTests/cpp/complex.cpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/unitTests/runTests.R | 1
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/unitTests/runit.RcppArmadillo.R | 11
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/unitTests/runit.complex.R |only
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/unitTests/runit.fastLm.R | 12
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/unitTests/runit.sample.R | 12
RcppArmadillo-0.3.930.1/RcppArmadillo/src/Makevars | 1
RcppArmadillo-0.3.930.1/RcppArmadillo/src/Makevars.win | 1
RcppArmadillo-0.3.930.1/RcppArmadillo/src/RcppArmadillo.cpp | 25
RcppArmadillo-0.3.930.1/RcppArmadillo/src/RcppExports.cpp |only
RcppArmadillo-0.3.930.1/RcppArmadillo/src/fastLm.cpp | 52
RcppArmadillo-0.3.930.1/RcppArmadillo/vignettes/RcppArmadillo-intro.Rnw | 4
RcppArmadillo-0.3.930.1/RcppArmadillo/vignettes/RcppArmadillo.bib | 11
136 files changed, 3410 insertions(+), 1544 deletions(-)
Title: Maximum Likelihood Estimates of Gaussian Processes
Diff between mlegp versions 3.1.3 dated 2012-12-20 and 3.1.4 dated 2013-12-10
Description: Maximum likelihood Gaussian process modeling for
univariate and multi-dimensional outputs with diagnostic plots.
Contact the maintainer for a package version that implements
sensitivity analysis functionality.
Author: Garrett M. Dancik
Maintainer: Garrett M. Dancik
mlegp-3.1.3/mlegp/READ_ME |only
mlegp-3.1.3/mlegp/inst/doc/mlegp.Rnw |only
mlegp-3.1.4/mlegp/CHANGES | 3 +
mlegp-3.1.4/mlegp/DESCRIPTION | 11 ++---
mlegp-3.1.4/mlegp/MD5 | 49 +++++++++++-------------
mlegp-3.1.4/mlegp/inst/vignettes |only
mlegp-3.1.4/mlegp/man/CV.Rd | 4 -
mlegp-3.1.4/mlegp/man/createGP.Rd | 7 +--
mlegp-3.1.4/mlegp/man/createWindow.Rd | 4 -
mlegp-3.1.4/mlegp/man/gp.list.Rd | 4 -
mlegp-3.1.4/mlegp/man/is.gp.Rd | 4 -
mlegp-3.1.4/mlegp/man/mlegp-internal.Rd | 4 -
mlegp-3.1.4/mlegp/man/mlegp-naming-functions.Rd | 4 -
mlegp-3.1.4/mlegp/man/mlegp-package.Rd | 4 -
mlegp-3.1.4/mlegp/man/mlegp-svd-functions.Rd | 4 -
mlegp-3.1.4/mlegp/man/mlegp.Rd | 10 ++--
mlegp-3.1.4/mlegp/man/nugget.Rd | 4 -
mlegp-3.1.4/mlegp/man/paramLookup.Rd | 4 -
mlegp-3.1.4/mlegp/man/plot.gp.Rd | 4 -
mlegp-3.1.4/mlegp/man/plot.gp.list.Rd | 4 -
mlegp-3.1.4/mlegp/man/plotObservedEffects.Rd | 4 -
mlegp-3.1.4/mlegp/man/predict.gp.Rd | 8 ++-
mlegp-3.1.4/mlegp/man/print.gp.Rd | 4 -
mlegp-3.1.4/mlegp/man/print.gp.list.Rd | 4 -
mlegp-3.1.4/mlegp/man/summary.gp.Rd | 4 -
mlegp-3.1.4/mlegp/man/summary.gp.list.Rd | 4 -
mlegp-3.1.4/mlegp/man/uniqueSummary.Rd | 4 -
27 files changed, 84 insertions(+), 76 deletions(-)
Title: A Fast Parameter Estimation Method for Evolutionary Biology
Diff between jaatha versions 2.1 dated 2013-09-10 and 2.2 dated 2013-12-10
Description: Jaatha is a composite likelihood method for inferring evolutionary
parameters using genetic data. Given a model of the evolutionary history of
two biological populations as well as SNP data from multiple individuals
from each population, it estimates model parameters like the time of
separation of both species.
Author: Lisha Mathew, Paul R. Staab and Dirk Metzler
Maintainer: Paul R. Staab
jaatha-2.1/jaatha/R/calc_likelihood.R |only
jaatha-2.1/jaatha/R/glm_fitting.R |only
jaatha-2.1/jaatha/R/simulate_dm.R |only
jaatha-2.2/jaatha/DESCRIPTION | 26 -
jaatha-2.2/jaatha/MD5 | 108 ++++--
jaatha-2.2/jaatha/NAMESPACE | 4
jaatha-2.2/jaatha/NEWS | 56 ++-
jaatha-2.2/jaatha/R/Block.R | 7
jaatha-2.2/jaatha/R/DemographicModel.R | 103 +----
jaatha-2.2/jaatha/R/Jaatha.R | 319 ++++++++----------
jaatha-2.2/jaatha/R/confidence_intervals.R |only
jaatha-2.2/jaatha/R/estimate_log_likelihood.R |only
jaatha-2.2/jaatha/R/find_best_par_in_block.R |only
jaatha-2.2/jaatha/R/fit_glm.R |only
jaatha-2.2/jaatha/R/helper_functions.R | 26 -
jaatha-2.2/jaatha/R/initial_search.R | 28 +
jaatha-2.2/jaatha/R/normalize.R |only
jaatha-2.2/jaatha/R/parallelization.R | 16
jaatha-2.2/jaatha/R/refined_search.R | 138 +++----
jaatha-2.2/jaatha/R/run_simulations.R |only
jaatha-2.2/jaatha/R/sim_likelihood.R |only
jaatha-2.2/jaatha/R/sim_program_ms.R | 5
jaatha-2.2/jaatha/R/sim_program_seqgen.R | 6
jaatha-2.2/jaatha/R/simulate_within_block.R | 67 ---
jaatha-2.2/jaatha/README | 29 -
jaatha-2.2/jaatha/inst/doc |only
jaatha-2.2/jaatha/inst/integrationTests |only
jaatha-2.2/jaatha/inst/unitTests |only
jaatha-2.2/jaatha/man/Jaatha-class.Rd | 57 +--
jaatha-2.2/jaatha/man/Jaatha.confidenceIntervals.Rd |only
jaatha-2.2/jaatha/man/Jaatha.getLikelihoods.Rd | 4
jaatha-2.2/jaatha/man/Jaatha.getStartingPoints.Rd | 4
jaatha-2.2/jaatha/man/Jaatha.initialSearch.Rd | 7
jaatha-2.2/jaatha/man/Jaatha.initialize.Rd | 25 -
jaatha-2.2/jaatha/man/Jaatha.refinedSearch.Rd | 13
jaatha-2.2/jaatha/man/convertSimResultsToDataFrame.Rd |only
jaatha-2.2/jaatha/man/denormalize.Rd |only
jaatha-2.2/jaatha/man/dm.simSumStats.Rd | 11
jaatha-2.2/jaatha/man/findBestParInBlock.Rd |only
jaatha-2.2/jaatha/man/fitGlm.Rd |only
jaatha-2.2/jaatha/man/fitGlmPoiTransformed.Rd |only
jaatha-2.2/jaatha/man/fitPoiSmoothed.Rd |only
jaatha-2.2/jaatha/man/normalize.Rd |only
jaatha-2.2/jaatha/man/runSimulations.Rd |only
jaatha-2.2/jaatha/man/simulateWithinBlock.Rd |only
jaatha-2.2/jaatha/src/Makevars | 6
jaatha-2.2/jaatha/src/Makevars.win |only
jaatha-2.2/jaatha/src/msFile2jsfs.cc | 12
jaatha-2.2/jaatha/src/seqgenFile2jsfs.cc | 58 +--
jaatha-2.2/jaatha/tests |only
jaatha-2.2/jaatha/vignettes |only
51 files changed, 561 insertions(+), 574 deletions(-)
Title: Hexagonal Binning Routines
Diff between hexbin versions 1.26.2 dated 2013-04-18 and 1.26.3 dated 2013-12-10
Description: Binning and plotting functions for hexagonal bins. Now
uses and relies on grid graphics and formal (S4) classes and
methods.
Author: Dan Carr
Maintainer: ORPHANED
hexbin-1.26.2/hexbin/README-R |only
hexbin-1.26.3/hexbin/DESCRIPTION | 8 ++++----
hexbin-1.26.3/hexbin/MD5 | 10 ++++++----
hexbin-1.26.3/hexbin/R/hexPlotMA.R | 4 ++--
hexbin-1.26.3/hexbin/R/hexplom.R | 2 +-
hexbin-1.26.3/hexbin/build |only
hexbin-1.26.3/hexbin/inst/doc/hexagon_binning.R |only
hexbin-1.26.3/hexbin/vignettes |only
8 files changed, 13 insertions(+), 11 deletions(-)
Title: Matrix exponential
Diff between expm versions 0.99-0 dated 2012-09-04 and 0.99-1 dated 2013-12-10
Description: Computation of the matrix exponential and related quantities.
Author: Vincent Goulet, Christophe Dutang, Martin Maechler,
David Firth, Marina Shapira, Michael Stadelmann,
expm-developers@lists.R-forge.R-project.org
Maintainer: Martin Maechler
expm-0.99-0/expm/inst/doc/expm.bib |only
expm-0.99-0/expm/tests/compare-bal-expm.R |only
expm-0.99-1/expm/DESCRIPTION | 18 ++---
expm-0.99-1/expm/MD5 | 26 ++++----
expm-0.99-1/expm/R/expm.R | 9 +-
expm-0.99-1/expm/R/expmCond-all.R | 3
expm-0.99-1/expm/R/expm_vec.R | 23 +++++--
expm-0.99-1/expm/TODO | 15 ++--
expm-0.99-1/expm/build |only
expm-0.99-1/expm/inst/doc/expm.R |only
expm-0.99-1/expm/inst/doc/expm.pdf |binary
expm-0.99-1/expm/inst/test-tools.R | 44 ++++++++------
expm-0.99-1/expm/man/expAtv.Rd | 54 ++++++++++-------
expm-0.99-1/expm/tests/bal-ex.R | 14 ++++
expm-0.99-1/expm/tests/ex2.R | 91 +++++++++++++++++++++++++++++-
expm-0.99-1/expm/vignettes |only
16 files changed, 216 insertions(+), 81 deletions(-)
Title: Correlation classification method (CCM)
Diff between CCM versions 1.0 dated 2011-04-23 and 1.1 dated 2013-12-10
Description: Classification method that classifies a sample according
to the class with the maximum mean (or any other function of)
correlation between the test and training samples with known
classes.
Author: Garrett M. Dancik and Yuanbin Ru
Maintainer: Garrett M. Dancik
CHANGES |only
DESCRIPTION | 13 +++++++------
MD5 |only
NAMESPACE |only
man/CCM-package.Rd | 6 +++---
5 files changed, 10 insertions(+), 9 deletions(-)
Title: Bessel -- Bessel Functions Computations and Approximations
Diff between Bessel versions 0.5-4 dated 2012-03-21 and 0.5-5 dated 2013-12-10
Description: Bessel Function Computations for complex and real numbers;
notably interfacing TOMS 644; approximations for large arguments,
experiments, etc.
Author: Martin Maechler
Maintainer: Martin Maechler
Bessel-0.5-4/Bessel/inst/doc/Bessel.bib |only
Bessel-0.5-4/Bessel/inst/doc/fullpage.sty |only
Bessel-0.5-4/Bessel/inst/doc/myVignette.sty |only
Bessel-0.5-5/Bessel/ChangeLog | 4 ++++
Bessel-0.5-5/Bessel/DESCRIPTION | 17 +++++++++--------
Bessel-0.5-5/Bessel/MD5 | 17 ++++++++++-------
Bessel-0.5-5/Bessel/build |only
Bessel-0.5-5/Bessel/inst/doc/other-Bessels.R |only
Bessel-0.5-5/Bessel/inst/doc/other-Bessels.pdf |binary
Bessel-0.5-5/Bessel/tests/IJKY.Rout.save | 13 ++++++-------
Bessel-0.5-5/Bessel/vignettes |only
11 files changed, 29 insertions(+), 22 deletions(-)
Title: The sparr package: SPAtial Relative Risk
Diff between sparr versions 0.3-3 dated 2013-10-08 and 0.3-4 dated 2013-12-10
Description: Provides functions to estimate kernel-smoothed relative risk functions and perform subsequent inference.
Author: T.M. Davies, M.L. Hazelton and J.C. Marshall
Maintainer: Tilman M. Davies
DESCRIPTION | 8
MD5 | 11
NEWS |only
R/bivariate.density.R | 805 ++++++++++++++++++++++++-----------------------
R/zzz.R | 2
man/bivariate.density.Rd | 309 +++++++++---------
man/sparr-package.Rd | 4
7 files changed, 582 insertions(+), 557 deletions(-)
Title: Control the number of threads on BLAS for R
Diff between RhpcBLASctl versions 0.13-343.05 dated 2013-12-09 and 0.13-344.02 dated 2013-12-10
Description: Control the number of threads on BLAS(Aka GotoBLAS, ACML and MKL).
--
GotoBLAS(generic) binary for Windows i386 http://prs.ism.ac.jp/~nakama/SurviveGotoBLAS2/binary/windows/x86/KATMAI/Rblas.dll
GotoBLAS(generic) binary for Windows x64 http://prs.ism.ac.jp/~nakama/SurviveGotoBLAS2/binary/windows/x64/PRESCOTT/Rblas.dll
Author: Junji Nakano
Maintainer: Ei-ji Nakama
ChangeLog | 3 ++-
DESCRIPTION | 10 +++++-----
MD5 | 6 +++---
src/Makevars.win | 4 +++-
4 files changed, 13 insertions(+), 10 deletions(-)
Title: publication-quality graphics.
Diff between prettyGraphs versions 2.0.3 dated 2013-06-12 and 2.1.5 dated 2013-12-10
Description: prettyGraphs contains simple, crisp graphics. Graphics produced by prettyGraphs are publication-quality.
Author: Derek Beaton
Maintainer: Derek Beaton
DESCRIPTION | 12 ++++++------
MD5 | 21 ++++++++++++---------
NAMESPACE | 2 +-
R/contributionBars.R | 7 ++++++-
R/minmaxHelper.R | 3 ++-
R/peeledHull.R | 2 +-
R/prettyGraphsColorSelection.R | 2 +-
R/prettyGraphsHSVColorSelection.R | 1 +
R/prettyScree.R |only
inst |only
man/prettyGraphs-package.Rd | 4 ++--
man/prettyGraphsHSVColorSelection.Rd | 2 +-
man/prettyScree.Rd |only
13 files changed, 33 insertions(+), 23 deletions(-)
Title: A generalization of Fisher's exact test
Diff between aylmer versions 1.0-10 dated 2013-01-21 and 1.0-11 dated 2013-12-10
Description: A generalization of Fisher's exact test that allows for
structural zeros.
Author: Robin K. S. Hankin (R) and Luke J. West (C++)
Maintainer: Robin K. S. Hankin
DESCRIPTION | 10 ++++++----
MD5 | 28 +++++++++++++++-------------
NAMESPACE | 3 +++
build |only
data/chess.rda |binary
data/frogs.rda |binary
data/gear.rda |binary
data/glass.rda |binary
data/icons.rda |binary
data/iqd.rda |binary
data/purum.rda |binary
data/rps.rda |binary
inst/doc/fishervig.R |only
inst/doc/fishervig.pdf |binary
man/aylmer-package.Rd | 2 +-
man/frogs.Rd | 2 +-
16 files changed, 26 insertions(+), 19 deletions(-)
Title: Adaptive Sparsity Models
Diff between AdaptiveSparsity versions 1.2 dated 2013-09-19 and 1.3 dated 2013-12-10
More information about AdaptiveSparsity at CRAN
Description: Implements Figueiredo EM algorithm for adaptive sparsity (Jeffreys prior) (see Figueiredo, M.A.T.; , "Adaptive sparseness for supervised learning," Pattern Analysis and Machine Intelligence, IEEE Transactions on , vol.25, no.9, pp. 1150- 1159, Sept. 2003) and Wong algorithm for adaptively sparse gaussian geometric models (see Wong, Eleanor, Suyash Awate, and P. Thomas Fletcher. "Adaptive Sparsity in Gaussian Graphical Models." In Proceedings of the 30th International Conference on Machine Learning (ICML-13), pp. 311-319. 2013.)
Author: Kristen Zygmunt, Eleanor Wong, Tom Fletcher
Maintainer: Kristen Zygmunt
DESCRIPTION | 8 ++---
MD5 | 8 ++---
R/aslm.R | 69 +++++++++++++++++++++++++++++++++++++++++++++++----
man/aslm-internal.Rd | 8 +++++
src/Makevars | 4 --
5 files changed, 81 insertions(+), 16 deletions(-)
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