Title: Low-level R to Java interface
Diff between rJava versions 0.9-5 dated 2013-12-03 and 0.9-6 dated 2013-12-23
Description: Low-level interface to Java VM very much like .C/.Call and friends. Allows creation of objects, calling methods and accessing fields.
Author: Simon Urbanek
Maintainer: Simon Urbanek
DESCRIPTION | 6
MD5 | 86 +++++-----
NEWS | 5
inst/javadoc/ArrayDimensionException.html | 4
inst/javadoc/ArrayWrapper.html | 4
inst/javadoc/ArrayWrapper_Test.html | 4
inst/javadoc/DummyPoint.html | 4
inst/javadoc/FlatException.html | 4
inst/javadoc/NotAnArrayException.html | 4
inst/javadoc/NotComparableException.html | 4
inst/javadoc/ObjectArrayException.html | 4
inst/javadoc/PrimitiveArrayException.html | 4
inst/javadoc/RJavaArrayIterator.html | 4
inst/javadoc/RJavaArrayTools.ArrayDimensionMismatchException.html | 4
inst/javadoc/RJavaArrayTools.html | 4
inst/javadoc/RJavaArrayTools_Test.html | 4
inst/javadoc/RJavaClassLoader.html | 4
inst/javadoc/RJavaComparator.html | 4
inst/javadoc/RJavaImport.html | 4
inst/javadoc/RJavaTools.html | 4
inst/javadoc/RJavaTools_Test.DummyNonStaticClass.html | 4
inst/javadoc/RJavaTools_Test.TestException.html | 4
inst/javadoc/RJavaTools_Test.html | 4
inst/javadoc/RectangularArrayBuilder.html | 4
inst/javadoc/RectangularArrayBuilder_Test.html | 4
inst/javadoc/RectangularArrayExamples.html | 4
inst/javadoc/RectangularArraySummary.html | 4
inst/javadoc/TestException.html | 4
inst/javadoc/allclasses-frame.html | 4
inst/javadoc/allclasses-noframe.html | 4
inst/javadoc/constant-values.html | 4
inst/javadoc/deprecated-list.html | 4
inst/javadoc/help-doc.html | 4
inst/javadoc/index-all.html | 4
inst/javadoc/index.html | 2
inst/javadoc/overview-tree.html | 4
inst/javadoc/package-frame.html | 4
inst/javadoc/package-summary.html | 4
inst/javadoc/package-tree.html | 4
inst/javadoc/serialized-form.html | 4
inst/jri/JRIEngine.jar |binary
inst/jri/REngine.jar |binary
src/init.c | 6
src/rJava.h | 2
44 files changed, 128 insertions(+), 123 deletions(-)
Title: R graphics device using cairo graphics library for creating
high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG,
PostScript) and display (X11 and Win32) output.
Diff between Cairo versions 1.5-4 dated 2013-12-14 and 1.5-5 dated 2013-12-23
Description: This package provides a Cairo graphics device that can be use to create high-quality vector (PDF, PostScript and SVG) and bitmap output (PNG,JPEG,TIFF), and high-quality rendering in displays (X11 and Win32). Since it uses the same back-end for all output, copying across formats is WYSIWYG. Files are created without the dependence on X11 or other external programs. This device supports alpha channel (semi-transparent drawing) and resulting images can contain transparent and semi-transparent regions. It is ideal for use in server environments (file output) and as a replacement for other devices that don't have Cairo's capabilities such as alpha support or anti-aliasing. Backends are modular such that any subset of backends is supported.
Author: Simon Urbanek
Maintainer: Simon Urbanek
Cairo-1.5-4/Cairo/version |only
Cairo-1.5-5/Cairo/DESCRIPTION | 6 +++---
Cairo-1.5-5/Cairo/MD5 | 11 +++++------
Cairo-1.5-5/Cairo/NEWS | 8 ++++++++
Cairo-1.5-5/Cairo/src/cairogd.c | 6 +++++-
Cairo-1.5-5/Cairo/src/cairogd.h | 3 ++-
Cairo-1.5-5/Cairo/src/cairotalk.c | 4 ++--
7 files changed, 25 insertions(+), 13 deletions(-)
Title: Inference for model-free between-group parameters for censored
survival data.
Diff between surv2sampleComp versions 1.0-2 dated 2013-11-19 and 1.0-3 dated 2013-12-23
More information about surv2sampleComp at CRAN
Description: Performs inference of several model-free group contrast measures, which include difference/ratio of cumulative incidence rates at given time points, quantiles, and restricted mean survival times (RMST). Two kinds of covariate adjustment procedures (i.e., regression and augmentation) for inference of the metrics based on RMST are also included.
Author: Lu Tian, Hajime Uno
Maintainer: Hajime Uno
surv2sampleComp-1.0-2/surv2sampleComp/R/GG2-02-boot-ver002.R |only
surv2sampleComp-1.0-2/surv2sampleComp/R/KM2-02-pert-ver002.R |only
surv2sampleComp-1.0-2/surv2sampleComp/R/surv2sample-ver001.R |only
surv2sampleComp-1.0-3/surv2sampleComp/DESCRIPTION | 8 ++++----
surv2sampleComp-1.0-3/surv2sampleComp/MD5 | 10 +++++-----
surv2sampleComp-1.0-3/surv2sampleComp/R/GG2-02-boot-ver003.R |only
surv2sampleComp-1.0-3/surv2sampleComp/R/KM2-02-pert-ver004.R |only
surv2sampleComp-1.0-3/surv2sampleComp/R/surv2sample-ver002.R |only
surv2sampleComp-1.0-3/surv2sampleComp/man/surv2sampleComp-package.Rd | 4 ++--
9 files changed, 11 insertions(+), 11 deletions(-)
Permanent link
Title: Rcpp integration of different Ziggurat Normal RNG
implementations
Diff between RcppZiggurat versions 0.1.0 dated 2013-12-21 and 0.1.1 dated 2013-12-23
Description: The Ziggurat generator for normally distributed random numbers,
originally proposed by Marsaglia and Tsang (JSS, 2000), has been improved
upon a few times starting with Leong et al (JSS, 2005). This package provides
an aggregation in order to compare different implementations. The goal is to
provide an 'faster but good enough' alternative for use with R and C++ code.
The package is still in an early state. Unless you know what you are doing,
sticking with the generators provided by R may be a good idea as these have
been extremely diligently tested.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel
ChangeLog | 8 ++++++++
DESCRIPTION | 14 ++++++++------
MD5 | 10 +++++-----
cleanup | 13 ++++++-------
inst/NEWS.Rd | 7 +++++++
inst/doc/RcppZiggurat.pdf |binary
6 files changed, 34 insertions(+), 18 deletions(-)
Title: Audio Interface for R
Diff between audio versions 0.1-4 dated 2011-01-15 and 0.1-5 dated 2013-12-23
Description: Interfaces to audio devices (mainly sample-based) from R to allow recording and playback of audio. Built-in devices include Windows MM, Mac OS X AudioUnits and PortAudio (the last one is very experimental).
Author: Simon Urbanek
Maintainer: Simon Urbanek
audio-0.1-4/audio/mkdist |only
audio-0.1-5/audio/DESCRIPTION | 13
audio-0.1-5/audio/LICENSE |only
audio-0.1-5/audio/MD5 |only
audio-0.1-5/audio/NEWS | 5
audio-0.1-5/audio/configure | 4491 +++++++++++--------------
audio-0.1-5/audio/configure.ac | 15
audio-0.1-5/audio/man/audioInstance-methods.Rd | 16
audio-0.1-5/audio/man/audioSample-methods.Rd | 12
audio-0.1-5/audio/man/audioSample.Rd | 8
audio-0.1-5/audio/man/play.Rd | 10
audio-0.1-5/audio/man/wait.Rd | 8
audio-0.1-5/audio/src/au.c | 10
audio-0.1-5/audio/src/config.h.in | 6
14 files changed, 2219 insertions(+), 2375 deletions(-)
Title: SHrinkage covariance Incorporating Prior knowledge
Diff between SHIP versions 1.0.1 dated 2010-07-03 and 1.0.2 dated 2013-12-23
Description: The SHIP-package allows the estimation of various types of
shrinkage covariance matrices. These types differ in terms of
the so-called covariance target (to be chosen by the user), the
highly structured matrix which the standard unbiased sample
covariance matrix is shrunken towards and which optionally
incorporates prior biological knowledge extracted from the
database KEGG. The shrinkage intensity is obtained via an
analytical procedure.
Author: Monika Jelizarow and Vincent Guillemot
Maintainer: Vincent Guillemot
DESCRIPTION | 12 +++++-------
MD5 |only
NAMESPACE |only
3 files changed, 5 insertions(+), 7 deletions(-)
Title: Plot publication-grade gene and genome maps
Diff between genoPlotR versions 0.8 dated 2012-06-25 and 0.8.2 dated 2013-12-23
Description: genoPlotR draws gene or genome maps and comparisons between
these, in a publication-grade manner. Starting from simple, common files,
it will draw postscript or pdf files that can be sent as such to journals
Author: Lionel Guy
Maintainer: Lionel Guy
DESCRIPTION | 17 ++++++-----
MD5 | 28 +++++++++++--------
NEWS | 14 +++++++++
R/color_schemes.R | 2 +
R/genoPlotR.R | 13 ++++++---
R/read_mauve_backbone.R | 4 ++
build |only
data/barto.RData |binary
data/chrY_subseg.RData |binary
data/mauve_bbone.RData |binary
data/three_genes.RData |binary
inst/doc/genoPlotR.R |only
inst/doc/genoPlotR.pdf |binary
man/annotation.Rd | 27 ++++++++++++++++++
man/plot_gene_map.Rd | 69 ++++++++++--------------------------------------
vignettes |only
16 files changed, 96 insertions(+), 78 deletions(-)
Title: rrdflibs - package with Jena and Apache HTTP libraries for use
with rrdf
Diff between rrdflibs versions 1.2.2 dated 2011-12-02 and 1.3.0 dated 2013-12-23
Description: Jena RDF and Apache HTTP Client libraries. Jena and HTTPClient are distributed under their original licenses.
Author: Egon Willighagen
Maintainer: Egon Willighagen
rrdflibs-1.2.2/rrdflibs/.gitignore |only
rrdflibs-1.2.2/rrdflibs/inst/java/arq-2.8.7.jar |only
rrdflibs-1.2.2/rrdflibs/inst/java/commons-codec-1.4.jar |only
rrdflibs-1.2.2/rrdflibs/inst/java/commons-logging-1.1.1.jar |only
rrdflibs-1.2.2/rrdflibs/inst/java/httpclient-4.1.2.jar |only
rrdflibs-1.2.2/rrdflibs/inst/java/httpclient-cache-4.1.2.jar |only
rrdflibs-1.2.2/rrdflibs/inst/java/httpcore-4.1.2.jar |only
rrdflibs-1.2.2/rrdflibs/inst/java/httpmime-4.1.2.jar |only
rrdflibs-1.2.2/rrdflibs/inst/java/icu4j-3.4.4.jar |only
rrdflibs-1.2.2/rrdflibs/inst/java/iri-0.8.jar |only
rrdflibs-1.2.2/rrdflibs/inst/java/jena-2.6.4.jar |only
rrdflibs-1.2.2/rrdflibs/inst/java/log4j-1.2.13.jar |only
rrdflibs-1.2.2/rrdflibs/inst/java/lucene-core-2.3.1.jar |only
rrdflibs-1.2.2/rrdflibs/inst/java/slf4j-api-1.5.8.jar |only
rrdflibs-1.2.2/rrdflibs/inst/java/slf4j-log4j12-1.5.8.jar |only
rrdflibs-1.2.2/rrdflibs/inst/java/stax-api-1.0.1.jar |only
rrdflibs-1.2.2/rrdflibs/inst/java/wstx-asl-3.2.9.jar |only
rrdflibs-1.2.2/rrdflibs/inst/java/xercesImpl-2.7.1.jar |only
rrdflibs-1.3.0/rrdflibs/DESCRIPTION | 9 +-
rrdflibs-1.3.0/rrdflibs/MD5 | 34 ++++-------
rrdflibs-1.3.0/rrdflibs/R/rrdflibs.R | 14 +---
rrdflibs-1.3.0/rrdflibs/inst/java/commons-codec-1.6.jar |only
rrdflibs-1.3.0/rrdflibs/inst/java/httpclient-4.2.3.jar |only
rrdflibs-1.3.0/rrdflibs/inst/java/httpcore-4.2.2.jar |only
rrdflibs-1.3.0/rrdflibs/inst/java/jcl-over-slf4j-1.6.4.jar |only
rrdflibs-1.3.0/rrdflibs/inst/java/jena-arq-2.10.1.jar |only
rrdflibs-1.3.0/rrdflibs/inst/java/jena-core-2.10.1.jar |only
rrdflibs-1.3.0/rrdflibs/inst/java/jena-iri-0.9.6.jar |only
rrdflibs-1.3.0/rrdflibs/inst/java/jena-tdb-0.10.1.jar |only
rrdflibs-1.3.0/rrdflibs/inst/java/log4j-1.2.16.jar |only
rrdflibs-1.3.0/rrdflibs/inst/java/slf4j-api-1.6.4.jar |only
rrdflibs-1.3.0/rrdflibs/inst/java/slf4j-log4j12-1.6.4.jar |only
rrdflibs-1.3.0/rrdflibs/inst/java/xercesImpl-2.11.0.jar |only
rrdflibs-1.3.0/rrdflibs/inst/java/xml-apis-1.4.01.jar |only
34 files changed, 26 insertions(+), 31 deletions(-)
Title: rrdf - support for the Resource Description Framework
Diff between rrdf versions 1.9.2 dated 2012-11-30 and 2.0.0 dated 2013-12-23
Description: Work with RDF data.
Author: Egon Willighagen
Maintainer: Egon Willighagen
DESCRIPTION | 11 ++++++-----
MD5 | 13 ++++++++-----
NAMESPACE | 2 +-
R/load.rdf.R | 22 +++++++++++++++++++++-
build |only
inst/doc/tutorial.R |only
inst/doc/tutorial.pdf |binary
inst/java/rrdf.jar |binary
man/fromString.rdf.Rd |only
9 files changed, 36 insertions(+), 12 deletions(-)
Title: Implementing dispersal into species distribution models
Diff between MigClim versions 1.5 dated 2013-09-05 and 1.6 dated 2013-12-23
Description: Functions for implementing species dispersal into projections
of species distribution models (e.g. under climate change scenarios).
Author: Robin Engler
Maintainer: Robin Engler
DESCRIPTION | 8
MD5 | 8
R/MigClim.migrate.R | 4
R/MigClim.plot.R | 2
src/migrate.c | 901 +++++++++++++++++++---------------------------------
5 files changed, 356 insertions(+), 567 deletions(-)
Title: Basic wavelet routines for one-, two- and three-dimensional
signal processing
Diff between waveslim versions 1.7.1 dated 2012-03-13 and 1.7.3 dated 2013-12-23
Description: Basic wavelet routines for time series (1D), image (2D)
and array (3D) analysis. The code provided here is based on
wavelet methodology developed in Percival and Walden (2000);
Gencay, Selcuk and Whitcher (2001); the dual-tree complex wavelet
transform (DTCWT) from Kingsbury (1999, 2001) as implemented by
Selesnick; and Hilbert wavelet pairs (Selesnick 2001, 2002). All
figures in chapters 4-7 of GSW (2001) are reproducible using this
package and R code available at the book website(s) below.
Author: Brandon Whitcher
Maintainer: Brandon Whitcher
DESCRIPTION | 30 +++++++++++++-------------
MD5 | 56 +++++++++++++++++++++++++-------------------------
R/zzz.R | 12 +++++++++-
data/acvs.andel10.rda |binary
data/acvs.andel11.rda |binary
data/acvs.andel8.rda |binary
data/acvs.andel9.rda |binary
data/ar1.rda |binary
data/barbara.rda |binary
data/blocks.rda |binary
data/cpi.rda |binary
data/dau.rda |binary
data/doppler.rda |binary
data/exchange.rda |binary
data/heavisine.rda |binary
data/ibm.rda |binary
data/japan.rda |binary
data/jumpsine.rda |binary
data/kobe.rda |binary
data/linchirp.rda |binary
data/mexm.rda |binary
data/nile.rda |binary
data/tourism.rda |binary
data/unemploy.rda |binary
data/xbox.rda |binary
src/dwt.h | 12 +++++-----
src/dwt2.c | 4 +++
src/dwt3.c | 5 +++-
src/hosking.c | 1
29 files changed, 68 insertions(+), 52 deletions(-)
Title: Three L1-Norm PCA Methods
Diff between pcaL1 versions 1.2 dated 2012-07-06 and 1.2.1 dated 2013-12-23
Description: This package contains three implementations of principal
component analysis methods using the L1 norm. The package
depends on COIN-OR Clp version >= 1.12.0. The methods
implemented are PCA-L1 (Kwak 2008), L1-PCA (Ke and Kanade 2003,
2005), and L1-PCA* (Brooks, Dula, and Boone 2012).
Author: Sapan Jot
Maintainer: Paul Brooks
pcaL1-1.2.1/pcaL1/DESCRIPTION | 7 ++++---
pcaL1-1.2.1/pcaL1/MD5 | 7 +++----
pcaL1-1.2.1/pcaL1/src/Makevars.in | 2 +-
pcaL1-1.2.1/pcaL1/src/Makevars.win | 2 +-
pcaL1-1.2/pcaL1/src/Makevars |only
5 files changed, 9 insertions(+), 9 deletions(-)
More information about qdapDictionaries at CRAN
Permanent link
Title: Functions for phonetics in R.
Diff between phonTools versions 0.2-0 dated 2013-05-17 and 0.2-1 dated 2013-12-23
Description: The functions contained in this package are intended to facilitate the organization, display, and analysis of the sorts of data frequently encountered in phonetics research and experimentation, including the easy creation of IPA vowel plots. Some functions also allow for the creation and manipulation of sounds saved as WAV files.
Author: Santiago Barreda
Maintainer: Santiago Barreda
phonTools-0.2-0/phonTools/ChangeLog |only
phonTools-0.2-0/phonTools/NEWS |only
phonTools-0.2-1/phonTools/DESCRIPTION | 17 --
phonTools-0.2-1/phonTools/LICENSE |only
phonTools-0.2-1/phonTools/MD5 | 170 ++++++++++-----------
phonTools-0.2-1/phonTools/R/FIRfilter.R | 3
phonTools-0.2-1/phonTools/R/Ffilter.R | 15 -
phonTools-0.2-1/phonTools/R/PSTM.R | 3
phonTools-0.2-1/phonTools/R/anova.rcr.R | 3
phonTools-0.2-1/phonTools/R/combocalc.R | 3
phonTools-0.2-1/phonTools/R/createtemplate.R | 3
phonTools-0.2-1/phonTools/R/findformants.R | 5
phonTools-0.2-1/phonTools/R/freqresponse.R | 9 -
phonTools-0.2-1/phonTools/R/hotelling.test.R | 3
phonTools-0.2-1/phonTools/R/imputeformants.R | 3
phonTools-0.2-1/phonTools/R/interpolate.R | 3
phonTools-0.2-1/phonTools/R/ipainfo.R | 3
phonTools-0.2-1/phonTools/R/ldaclassify.R | 3
phonTools-0.2-1/phonTools/R/loadsound.R | 3
phonTools-0.2-1/phonTools/R/loadtable.R | 3
phonTools-0.2-1/phonTools/R/lpc.R | 67 ++++----
phonTools-0.2-1/phonTools/R/makesound.R | 2
phonTools-0.2-1/phonTools/R/mscohere.R |only
phonTools-0.2-1/phonTools/R/multiplot.R | 2
phonTools-0.2-1/phonTools/R/normalize.R | 3
phonTools-0.2-1/phonTools/R/normalize.compare.R | 2
phonTools-0.2-1/phonTools/R/ntypes.R | 3
phonTools-0.2-1/phonTools/R/peakfind.R | 3
phonTools-0.2-1/phonTools/R/phasor.R |only
phonTools-0.2-1/phonTools/R/pickIPA.R | 24 +-
phonTools-0.2-1/phonTools/R/plot.rcr.R | 3
phonTools-0.2-1/phonTools/R/plot.sound.R | 3
phonTools-0.2-1/phonTools/R/plot.spectrogram.R | 29 +--
phonTools-0.2-1/phonTools/R/plot.template.R | 3
phonTools-0.2-1/phonTools/R/polezero.R | 3
phonTools-0.2-1/phonTools/R/powertrack.R | 3
phonTools-0.2-1/phonTools/R/preemphasis.R | 3
phonTools-0.2-1/phonTools/R/print.anova.rcr.R | 2
phonTools-0.2-1/phonTools/R/print.hotelling.test.R | 2
phonTools-0.2-1/phonTools/R/print.rcr.R | 3
phonTools-0.2-1/phonTools/R/print.sound.R | 2
phonTools-0.2-1/phonTools/R/print.spectrogram.R | 3
phonTools-0.2-1/phonTools/R/print.summary.rcr.R | 3
phonTools-0.2-1/phonTools/R/pwelch.R |only
phonTools-0.2-1/phonTools/R/rcr.R | 5
phonTools-0.2-1/phonTools/R/reduce.fraction.R | 3
phonTools-0.2-1/phonTools/R/resample.R | 3
phonTools-0.2-1/phonTools/R/rmvtnorm.R | 3
phonTools-0.2-1/phonTools/R/rotate.R |only
phonTools-0.2-1/phonTools/R/sdellipse.R | 3
phonTools-0.2-1/phonTools/R/sinc.R | 3
phonTools-0.2-1/phonTools/R/sinusoid.R | 4
phonTools-0.2-1/phonTools/R/snip.R | 3
phonTools-0.2-1/phonTools/R/spectralslice.R | 45 +++--
phonTools-0.2-1/phonTools/R/spectrogram.R | 38 ++--
phonTools-0.2-1/phonTools/R/summary.rcr.R | 3
phonTools-0.2-1/phonTools/R/vowelplot.R | 3
phonTools-0.2-1/phonTools/R/vowelsynth.R | 4
phonTools-0.2-1/phonTools/R/windowfunc.R | 3
phonTools-0.2-1/phonTools/R/writesound.R | 2
phonTools-0.2-1/phonTools/R/xsampatoIPA.R | 3
phonTools-0.2-1/phonTools/R/zeros.R |only
phonTools-0.2-1/phonTools/man/FIRfilter.Rd | 10 -
phonTools-0.2-1/phonTools/man/Ffilter.Rd | 13 -
phonTools-0.2-1/phonTools/man/findformants.Rd | 12 -
phonTools-0.2-1/phonTools/man/freqresponse.Rd | 5
phonTools-0.2-1/phonTools/man/h95.Rd | 3
phonTools-0.2-1/phonTools/man/hotelling.test.Rd | 12 -
phonTools-0.2-1/phonTools/man/interpolate.Rd | 7
phonTools-0.2-1/phonTools/man/makesound.Rd | 8
phonTools-0.2-1/phonTools/man/multiplot.Rd | 5
phonTools-0.2-1/phonTools/man/normalize.Rd | 16 +
phonTools-0.2-1/phonTools/man/normalize.compare.Rd | 13 -
phonTools-0.2-1/phonTools/man/p73.Rd | 3
phonTools-0.2-1/phonTools/man/pb52.Rd | 3
phonTools-0.2-1/phonTools/man/phasor.Rd |only
phonTools-0.2-1/phonTools/man/pickIPA.Rd | 9 -
phonTools-0.2-1/phonTools/man/powertrack.Rd | 4
phonTools-0.2-1/phonTools/man/preemphasis.Rd | 4
phonTools-0.2-1/phonTools/man/pwelch.Rd |only
phonTools-0.2-1/phonTools/man/resample.Rd | 3
phonTools-0.2-1/phonTools/man/rotate.Rd |only
phonTools-0.2-1/phonTools/man/sdellipse.Rd | 6
phonTools-0.2-1/phonTools/man/sinc.Rd | 3
phonTools-0.2-1/phonTools/man/sinusoid.Rd | 8
phonTools-0.2-1/phonTools/man/spectralslice.Rd | 27 +--
phonTools-0.2-1/phonTools/man/spectrogram.Rd | 32 ++-
phonTools-0.2-1/phonTools/man/t07.Rd | 3
phonTools-0.2-1/phonTools/man/vowelplot.Rd | 35 ++--
phonTools-0.2-1/phonTools/man/vowelsynth.Rd | 22 +-
phonTools-0.2-1/phonTools/man/xsampatoIPA.Rd | 8
phonTools-0.2-1/phonTools/man/zeros.Rd |only
92 files changed, 466 insertions(+), 356 deletions(-)