Thu, 02 Jan 2014

Package R.devices updated to version 2.8.2 with previous version 2.7.2 dated 2013-10-16

Title: Unified handling of graphics devices
Description: This package provides functions for creating plots and image files in a unified way regardless of output format (EPS, PDF, PNG, SVG, TIFF, WMF, etc.). Default device options as well as scales and aspect ratios are controlled in a uniform way across all device types. Switching output format requires minimal changes in code. This package is ideal for large-scale batch processing, because it will never leave open graphics devices or incomplete image files behind, even on errors or user interrupts.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson

Diff between R.devices versions 2.7.2 dated 2013-10-16 and 2.8.2 dated 2014-01-02

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 inst/doc/R.devices-overview.pdf |binary
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Package qrfactor updated to version 1.4 with previous version 1.3 dated 2013-04-18

Title: Simultaneous simulation of Q and R mode factor analyses with Spatial data
Description: The qrfactor package simultaneously runs both Q and R mode factor analyses. The package contains only one function called qrfactor() that can perform PCA, R-mode Factor Analysis, Q-mode Factor Analysis, Simultaneous R- and Q-mode Factor Analysis, Principal Coordinate Analysis, as wells as Multidimensional Scaling (MDS). Loadings and scores can easily be computed from the simulation.The plot.qrfactor() function offers several annotated biplots for all possible combinations of eigenvectors, loadings, and scores. Input data includes shapefiles, tables and dataframe
Author: George Owusu
Maintainer: George Owusu

Diff between qrfactor versions 1.3 dated 2013-04-18 and 1.4 dated 2014-01-02

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 8 files changed, 59 insertions(+), 42 deletions(-)

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Package qiimer updated to version 0.9.2 with previous version 0.9.1 dated 2013-10-05

Title: Work with QIIME Output Files in R
Description: Open QIIME output files in R, compute statistics, and create plots from the data.
Author: Kyle Bittinger
Maintainer: Kyle Bittinger

Diff between qiimer versions 0.9.1 dated 2013-10-05 and 0.9.2 dated 2014-01-02

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 15 files changed, 189 insertions(+), 96 deletions(-)

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Package stylo updated to version 0.5.3 with previous version 0.5.2 dated 2013-09-08

Title: Functions for a variety of stylometric analyses
Description: A number of functions, supplemented by GUI, to perform various analyses in the field of computational stylistics, authorship attribution, etc.
Author: Maciej Eder, Jan Rybicki, Mike Kestemont
Maintainer: Maciej Eder

Diff between stylo versions 0.5.2 dated 2013-09-08 and 0.5.3 dated 2014-01-02

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Package pumilioR updated to version 1.1 with previous version 1.0 dated 2013-07-08

Title: Pumilio in R
Description: R package to query and get data out of a Pumilio sound archive system (http://pumilio.sourceforge.net).
Author: Luis J. Villanueva-Rivera
Maintainer: Luis J. Villanueva-Rivera

Diff between pumilioR versions 1.0 dated 2013-07-08 and 1.1 dated 2014-01-02

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Package lessR updated to version 3.0 with previous version 2.9.7 dated 2013-10-29

Title: Less Code, More Results
Description: Each function accomplishes the work of several or more standard R functions. For example, two function calls, Read() and CountAll(), read the data and generate descriptive statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for descriptive statistics, a comprehensive regression analysis, analysis of variance and t-test, plotting, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function and color themes. The function Help provides a help system that suggests specific analyses and functions. Variable labels are available. A confirmatory factor analysis of multiple indicator measurement models is also available as well as pedagogical routines for data simulation such as for the Central Limit Theorem.
Author: David W. Gerbing, School of Business Administration, Portland State University
Maintainer: David W. Gerbing

Diff between lessR versions 2.9.7 dated 2013-10-29 and 3.0 dated 2014-01-02

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Package glmmBUGS updated to version 2.3 with previous version 2.0 dated 2012-01-13

Title: Generalised Linear Mixed Models and Spatial Models with WinBUGS, BRugs, or OpenBUGS
Description: Write bugs model files for hierarchical and spatial models, arranges unbalanced data in ragged arrays, and creates starting values.
Author: Patrick Brown
Maintainer: Patrick Brown

Diff between glmmBUGS versions 2.0 dated 2012-01-13 and 2.3 dated 2014-01-02

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Package binom updated to version 1.1-1 with previous version 1.0-5 dated 2009-05-27

Title: Binomial Confidence Intervals For Several Parameterizations
Description: Constructs confidence intervals on the probability of success in a binomial experiment via several parameterizations
Author: Sundar Dorai-Raj
Maintainer: Sundar Dorai-Raj

Diff between binom versions 1.0-5 dated 2009-05-27 and 1.1-1 dated 2014-01-02

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Package timereg updated to version 1.8.3 with previous version 1.8.2 dated 2013-11-21

Title: Flexible regression models for survival data.
Description: Programs for Martinussen and Scheike (2006), `Dynamic Regression Models for Survival Data', Springer Verlag. Plus more recent developments. Additive survival model, semiparametric proportional odds model, fast cumulative residuals, excess risk models and more. Flexible competing risks regression including GOF-tests. Two-stage frailty modelling. PLS for the additive risk model. Lasso in ahaz package.
Author: Thomas Scheike with contributions from Torben Martinussen and Jeremy Silver
Maintainer: Thomas Scheike

Diff between timereg versions 1.8.2 dated 2013-11-21 and 1.8.3 dated 2014-01-02

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Package rrdf updated to version 2.0.2 with previous version 2.0.1 dated 2014-01-01

Title: rrdf - support for the Resource Description Framework
Description: Work with RDF data.
Author: Egon Willighagen
Maintainer: Egon Willighagen

Diff between rrdf versions 2.0.1 dated 2014-01-01 and 2.0.2 dated 2014-01-02

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Package x12GUI updated to version 0.10.0 with previous version 0.9-3 dated 2013-10-24

Title: X12 - Graphical User Interface
Description: A graphical user interface for the x12 package
Author: Daniel Schopfhauser, Alexander Kowarik , Angelika Meraner
Maintainer: Alexander Kowarik

Diff between x12GUI versions 0.9-3 dated 2013-10-24 and 0.10.0 dated 2014-01-02

 DESCRIPTION |   16 ++++++------
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Package fRegression updated to version 3010.80 with previous version 3010.79 dated 2013-12-17

Title: Regression Based Decision and Prediction
Description: Environment for teaching "Financial Engineering and Computational Finance"
Author: Diethelm Wuertz (for the Rmetrics port), R core team (for lm() from R's base and nnet() from nnet package); B.R. Ripley (for glm() from R's base); S.N. Wood (for gam() from mgcv package); N.N. (for ppr() from modreg package); M. O' Connors (for functions from polspline package); and T. Hothorn, A. Zeileis G. Millo and D. Mitchell (for bgtest(), bptest(), dwtest(), gqtest(), harvtest(), hmctest(), raintest(), reset() and resettest() from lmtest package)
Maintainer: Yohan Chalabi

Diff between fRegression versions 3010.79 dated 2013-12-17 and 3010.80 dated 2014-01-02

 ChangeLog                                  |   12 +
 DESCRIPTION                                |   14 +-
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Package x12 updated to version 1.3.0 with previous version 1.2-0 dated 2013-10-21

Title: x12 - wrapper function and structure for batch processing
Description: A wrapper function and GUI for the X12 binaries
Author: Alexander Kowarik , Angelika Meraner
Maintainer: Alexander Kowarik

Diff between x12 versions 1.2-0 dated 2013-10-21 and 1.3.0 dated 2014-01-02

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New package Power2Stage with initial version 0.0-6
Package: Power2Stage
Type: Package
Title: Power and Sample size distribution of 2-stage BE studies via simulations
Version: 0.0-6
Date: 2014-01-02
Authors@R: c(person("Detlew", "Labes", role = c("aut","cre"), email = "DetlewLabes@gmx.de"), person("Helmut", "Schuetz", role = c("ctb"), email = "helmut.schuetz@bebac.at"))
Description: Contains functions to calculate power and sample size distribution of 2-stage BE studies according to Potvin et.al. / Montague et. al. modified to include a futility Nmax and modified to do the sample size estimation step with PE and mse of stage 1 as well as the power calculation steps according to Karalis & Macheras. The third function calculates power and sample size distribution of 2-stage BE studies with a futility criterion for the point estimator of T/R from stage 1.
Depends: PowerTOST
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
Packaged: 2014-01-02 08:15:28 UTC; dlabes
Author: Detlew Labes [aut, cre], Helmut Schuetz [ctb]
Maintainer: Detlew Labes
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-01-02 09:53:28

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Package jsonlite updated to version 0.9.3 with previous version 0.9.1 dated 2013-12-12

Title: A smarter JSON encoder/decoder for R
Description: This package is a fork of the RJSONIO package by Duncan Temple Lang. It builds on the parser from RJSONIO, but implements a different mapping between R objects and JSON strings. The C code in this package is mostly from Temple Lang, the R code has been rewritten from scratch. In addition to drop-in replacements for fromJSON and toJSON, the package has functions to serialize objects. Furthermore, the package contains a lot of unit tests to make sure that all edge cases are encoded and decoded consistently for use with dynamic data in systems and applications.
Author: Jeroen Ooms, Duncan Temple Lang
Maintainer: Jeroen Ooms

Diff between jsonlite versions 0.9.1 dated 2013-12-12 and 0.9.3 dated 2014-01-02

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 jsonlite-0.9.3/jsonlite/src/libjson/Source/JSONDefs.h           |    7 
 jsonlite-0.9.3/jsonlite/src/libjson/Source/JSONDefs/GNU_C.h     |    6 
 jsonlite-0.9.3/jsonlite/src/libjson/Source/JSONGlobals.h        |   18 
 jsonlite-0.9.3/jsonlite/src/libjson/Source/JSONMemory.cpp       |    6 
 jsonlite-0.9.3/jsonlite/src/libjson/Source/JSONMemory.h         |   24 
 jsonlite-0.9.3/jsonlite/src/libjson/Source/JSONMemoryPool.h     |    6 
 jsonlite-0.9.3/jsonlite/src/libjson/Source/JSONNode.cpp         |   25 
 jsonlite-0.9.3/jsonlite/src/libjson/Source/JSONNode.h           |   33 -
 jsonlite-0.9.3/jsonlite/src/libjson/Source/JSONNode_Mutex.cpp   |    7 
 jsonlite-0.9.3/jsonlite/src/libjson/Source/JSONPreparse.h       |    4 
 jsonlite-0.9.3/jsonlite/src/libjson/Source/JSONStats.h          |only
 jsonlite-0.9.3/jsonlite/src/libjson/Source/JSONStream.cpp       |    9 
 jsonlite-0.9.3/jsonlite/src/libjson/Source/JSONStream.h         |    6 
 jsonlite-0.9.3/jsonlite/src/libjson/Source/JSONValidator.cpp    |    4 
 jsonlite-0.9.3/jsonlite/src/libjson/Source/JSONValidator.h      |    2 
 jsonlite-0.9.3/jsonlite/src/libjson/Source/JSONWorker.cpp       |    8 
 jsonlite-0.9.3/jsonlite/src/libjson/Source/JSONWriter.cpp       |    6 
 jsonlite-0.9.3/jsonlite/src/libjson/Source/JSON_Base64.h        |    6 
 jsonlite-0.9.3/jsonlite/src/libjson/Source/NumberToString.h     |    4 
 jsonlite-0.9.3/jsonlite/src/libjson/Source/internalJSONNode.cpp |  267 ++++------
 jsonlite-0.9.3/jsonlite/src/libjson/Source/internalJSONNode.h   |   15 
 jsonlite-0.9.3/jsonlite/src/libjson/Source/libjson.cpp          |    2 
 jsonlite-0.9.3/jsonlite/src/libjson/makefile                    |   41 -
 46 files changed, 392 insertions(+), 386 deletions(-)

More information about jsonlite at CRAN
Permanent link

New package icapca with initial version 1.0
Package: icapca
Version: 1.0
Date: 2014-1-1
Title: Mixed ICA/PCA
Author: Roger Woods
Maintainer: Roger Woods
Description: Implements mixed ICA/PCA model for blind source separation, potentially with inclusion of Gaussian sources
License: Unlimited
Packaged: 2014-01-02 07:31:03 UTC; rwoods
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-01-02 08:56:18

More information about icapca at CRAN
Permanent link

Package gnm updated to version 1.0-7 with previous version 1.0-6 dated 2012-10-02

Title: Generalized Nonlinear Models
Description: Functions to specify and fit generalized nonlinear models, including models with multiplicative interaction terms such as the UNIDIFF model from sociology and the AMMI model from crop science, and many others. Over-parameterized representations of models are used throughout; functions are provided for inference on estimable parameter combinations, as well as standard methods for diagnostics etc.
Author: Heather Turner and David Firth
Maintainer: Heather Turner

Diff between gnm versions 1.0-6 dated 2012-10-02 and 1.0-7 dated 2014-01-02

 DESCRIPTION                   |    7 ++++---
 MD5                           |   28 ++++++++++++++--------------
 R/anova.gnm.R                 |    5 +++--
 tests/RC.Rout.save            |   10 ++++------
 tests/RChomog.Rout.save       |    8 +++-----
 tests/biplot.Rout.save        |   10 ++++------
 tests/bwt.Rout.save           |   36 ++++++++++++++----------------------
 tests/diagonalRef.Rout.save   |   10 ++++------
 tests/doubleUnidiff.Rout.save |   10 ++++------
 tests/gammi.Rout.save         |    8 +++-----
 tests/logexcess.Rout.save     |   10 ++++------
 tests/logistic.Rout.save      |   10 ++++------
 tests/nls.Rout.save           |   10 ++++------
 tests/stereotype.Rout.save    |   10 ++++------
 tests/unidiff.Rout.save       |    8 +++-----
 15 files changed, 76 insertions(+), 104 deletions(-)

More information about gnm at CRAN
Permanent link

Package BH updated to version 1.51.0-4 with previous version 1.51.0-3 dated 2013-10-19

Title: Boost C++ header files
Description: Boost provides free peer-reviewed portable C++ source libraries. A large part of Boost is provided as C++ template code which is resolved entirely at compile-time without linking. This package aims to provide the most useful subset of Boost libraries for template use among CRAN package. By placing these libraries in this package, we offer a more efficient distribution system for CRAN as replication of this code in the sources of other packages is avoided.
Author: Dirk Eddelbuettel, John W. Emerson and Michael J. Kane
Maintainer: Dirk Eddelbuettel

Diff between BH versions 1.51.0-3 dated 2013-10-19 and 1.51.0-4 dated 2014-01-02

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 man/BH-package.Rd                                                         |    7 
 634 files changed, 1144 insertions(+), 15 deletions(-)

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