Title: Access to Twitter Streaming API via R
Description: This package provides a series of functions that allow R users
to access Twitter's filter, sample, and user streams, and to
parse the output into data frames.
Author: Pablo Barbera
Maintainer: Pablo Barbera
Diff between streamR versions 0.2 dated 2014-01-05 and 0.2.1 dated 2014-01-06
ChangeLog | 8 +++++--- DESCRIPTION | 9 +++++---- MD5 | 18 +++++++++--------- NAMESPACE | 1 - R/filterStream.R | 15 ++++++++------- R/sampleStream.R | 10 ++++++---- R/streamR-package.R | 2 +- R/userStream.R | 12 +++++++----- man/filterStream.Rd | 3 ++- man/userStream.Rd | 3 ++- 10 files changed, 45 insertions(+), 36 deletions(-)
Title: (Standardised) Major Axis Estimation and Testing Routines
Description: This package provides methods of fitting bivariate lines in allometry using the major axis (MA) or standardised major axis (SMA), and for making inferences about such lines. The available methods of inference include confidence intervals and one-sample tests for slope and elevation, testing for a common slope or elevation amongst several allometric lines, constructing a confidence interval for a common slope or elevation, and testing for no shift along a common axis, amongst several samples.
Author: David Warton
Maintainer: Remko Duursma
Diff between smatr versions 3.4 dated 2013-06-27 and 3.4-3 dated 2014-01-06
DESCRIPTION | 25 +++++++++---------------- MD5 | 16 ++++++++-------- R/fitted.sma.R | 9 ++++++--- R/plot.sma.R | 25 +++++++++++++++++++------ R/residuals.sma.R | 2 +- R/sma.R | 10 +++------- data/leaflife.RData |binary data/leafmeas.RData |binary man/plot.sma.Rd | 3 ++- 9 files changed, 48 insertions(+), 42 deletions(-)
Title: Sparse Lightweight Arrays and Matrices
Description: Data structures and algorithms for sparse arrays and matrices,
based on index arrays and simple triplet representations, respectively.
Author: Kurt Hornik [aut, cre],
David Meyer [aut],
Christian Buchta [aut]
Maintainer: Kurt Hornik
Diff between slam versions 0.1-30 dated 2013-09-25 and 0.1-31 dated 2014-01-06
DESCRIPTION | 6 MD5 | 38 ++-- NAMESPACE | 15 + R/apply.R |only R/crossprod.R |only R/matrix.R | 18 +- R/stm.R | 44 ----- man/apply.Rd |only man/crossprod.Rd | 25 +- man/foreign.Rd | 10 - src/apply.c |only src/sparse.c | 386 +++++++++++++++++++++++++++------------------- src/util.c | 11 + tests/apply.R |only tests/apply.Rout.save |only tests/crossprod.R |only tests/crossprod.Rout.save |only tests/dimgets.R | 3 tests/extract.Rout.save | 12 - tests/stm.R | 6 tests/stm.Rout.save | 14 + tests/stm_apply.R |only tests/stm_apply.Rout.save |only tests/subassign.R | 1 tests/subassign.Rout.save | 22 +- 25 files changed, 360 insertions(+), 251 deletions(-)
Title: Spherical k-Means Clustering
Description: Algorithms to compute spherical k-means partitions.
Features several methods, including a genetic and a fixed-point
algorithm and an interface to the CLUTO vcluster program.
Author: Kurt Hornik [aut, cre],
Ingo Feinerer [aut],
Martin Kober [aut]
Maintainer: Kurt Hornik
Diff between skmeans versions 0.2-4 dated 2013-09-06 and 0.2-5 dated 2014-01-06
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/skmeans.R | 26 ++++++++++++++------------ 3 files changed, 20 insertions(+), 18 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-03-19 0.1
Title: latent effect adjustment after primary projection
Description: These functions take a gene expression value matrix, a
primary covariate vector, an additional known covariates
matrix. A two stage analysis is applied to counter the effects
of latent variables on the rankings of hypotheses. The
estimation and adjustment of latent effects are proposed by
Sun, Zhang and Owen (2011). "leapp" is developed in the
context of microarray experiments, but may be used as a general
tool for high throughput data sets where dependence may be
involved.
Author: Yunting Sun
Maintainer: Yunting Sun
Diff between leapp versions 1.0 dated 2012-04-07 and 1.1 dated 2014-01-06
DESCRIPTION | 13 +++++++------ MD5 | 32 ++++++++++++++++---------------- R/leapp.R | 2 +- man/AlternateSVD.Rd | 2 +- man/FindAUC.Rd | 2 +- man/FindFpr.Rd | 2 +- man/FindPrec.Rd | 2 +- man/FindRec.Rd | 2 +- man/FindTpr.Rd | 2 +- man/IPOD.Rd | 2 +- man/IPODFUN.Rd | 2 +- man/Pvalue.Rd | 2 +- man/ROCplot.Rd | 2 +- man/leapp-package.Rd | 6 +++--- man/leapp.Rd | 2 +- man/ridge.Rd | 2 +- man/simdat.Rd | 2 +- 17 files changed, 40 insertions(+), 39 deletions(-)
Title: SciViews GUI API - Functions to interface with Komodo Edit/IDE
Description: Functions to manage the GUI client, like Komodo with the
SciViews-K extension
Author: Philippe Grosjean
Maintainer: Philippe Grosjean
Diff between svKomodo versions 0.9-59 dated 2013-01-28 and 0.9-61 dated 2014-01-06
svKomodo-0.9-59/svKomodo/inst/LICENSE |only svKomodo-0.9-61/svKomodo/DESCRIPTION | 13 +++++---- svKomodo-0.9-61/svKomodo/MD5 | 11 +++----- svKomodo-0.9-61/svKomodo/NEWS | 13 ++++++++- svKomodo-0.9-61/svKomodo/R/svKomodo-internal.R | 25 +++++------------- svKomodo-0.9-61/svKomodo/inst/NEWS.Rd | 31 ++++++++++++++++------- svKomodo-0.9-61/svKomodo/man/svKomodo-package.Rd | 4 +- 7 files changed, 56 insertions(+), 41 deletions(-)
Title: Stochastic Frontier Analysis
Description: Stochastic Frontier Analysis
introduced by Aigner, Lovell and Schmidt (1976)
and Battese and Coelli (1992, 1995).
Author: Ariane Straub, under the supervision of Torsten Hothorn
Maintainer: Ariane Straub
Diff between sfa versions 1.0-0 dated 2011-01-24 and 1.0-1 dated 2014-01-06
DESCRIPTION | 16 +++++++++------- MD5 |only R/sfa.R | 8 ++++++-- man/sfa-package.Rd | 2 +- man/sfa.Rd | 3 ++- 5 files changed, 18 insertions(+), 11 deletions(-)
Title: Visualization for seismic tomography
Description: Created mainly for use with seismic tomography, this program
plots tomographic images, and allows one to interact and query
three-dimensional tomographic models.
Vertical cross-sectional cuts can be extracted by mouse click.
Geographic information can be added easily.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
Diff between RTOMO versions 1.1-0 dated 2012-12-17 and 1.1-2 dated 2014-01-06
RTOMO-1.1-0/RTOMO/R/HOZscale.R |only RTOMO-1.1-0/RTOMO/R/jstats.R |only RTOMO-1.1-0/RTOMO/R/meshgrid.R |only RTOMO-1.1-0/RTOMO/R/tomo.colors.R |only RTOMO-1.1-0/RTOMO/man/HOZscale.Rd |only RTOMO-1.1-0/RTOMO/man/jstats.Rd |only RTOMO-1.1-0/RTOMO/man/meshgrid.Rd |only RTOMO-1.1-0/RTOMO/man/tomo.colors.Rd |only RTOMO-1.1-2/RTOMO/DESCRIPTION | 22 ++++++++------- RTOMO-1.1-2/RTOMO/MD5 | 48 ++++++++++++++------------------- RTOMO-1.1-2/RTOMO/NAMESPACE | 4 ++ RTOMO-1.1-2/RTOMO/R/FANCY.TOMO.R | 30 +++++++++----------- RTOMO-1.1-2/RTOMO/R/GXMA3D.R | 8 ++--- RTOMO-1.1-2/RTOMO/R/GXMA3DV.R | 8 ++--- RTOMO-1.1-2/RTOMO/R/PLOT.TOMOXSEC.R | 6 ++-- RTOMO-1.1-2/RTOMO/R/SHOWTOMO.R | 6 ++-- RTOMO-1.1-2/RTOMO/R/TOMO.colors.R |only RTOMO-1.1-2/RTOMO/R/TOMO3D.drive.R | 42 ++++++++++++++-------------- RTOMO-1.1-2/RTOMO/R/TOMOXSEC.R | 2 - RTOMO-1.1-2/RTOMO/R/XSEC.drive.R | 18 ++++++------ RTOMO-1.1-2/RTOMO/R/get2Drayblox.R | 4 +- RTOMO-1.1-2/RTOMO/R/makeMOD.R | 2 - RTOMO-1.1-2/RTOMO/R/pltomo.R | 2 - RTOMO-1.1-2/RTOMO/man/PLOT.TOMOXSEC.Rd | 2 - RTOMO-1.1-2/RTOMO/man/RTOMO-package.Rd | 2 - RTOMO-1.1-2/RTOMO/man/TOMO.colors.Rd |only RTOMO-1.1-2/RTOMO/man/TOMO3D.drive.Rd | 4 ++ RTOMO-1.1-2/RTOMO/man/TOMOXSEC.Rd | 7 +++- RTOMO-1.1-2/RTOMO/man/XSEC.drive.Rd | 4 ++ RTOMO-1.1-2/RTOMO/man/pltomo.Rd | 2 - 30 files changed, 114 insertions(+), 109 deletions(-)
Title: Seismic Hypocenter Determination
Description: Rquake is a package for analysis of seismic data collected continuously, or in trigger mode. The functions organize other functions from RSEIS and GEOmap to help researchers pick, locate, and store hypocenters for detailed seismic investigation.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
Diff between Rquake versions 2.1-1 dated 2013-03-31 and 2.2 dated 2014-01-06
DESCRIPTION | 18 ++---- MD5 | 144 +++++++++++++++++++++++++------------------------- NAMESPACE | 6 ++ R/BLACKJACK.R | 2 R/CONTPF.R | 4 - R/DistWeight.R | 2 R/DoRLocate.R | 8 +- R/DoUWLocate.R | 8 +- R/GETpsTT.R | 4 - R/GPIX.R | 14 ++-- R/HiJACK.R | 2 R/INITpickfile.R | 12 ++-- R/Klocate.R | 18 +++--- R/LeftjustTime.R | 8 +- R/MeanStaDist.R | 4 - R/NLSlocate.R | 12 ++-- R/OnePerSta.R | 6 +- R/PCfiledatetime.R | 4 - R/PFoutput.R | 2 R/Pick3.R | 6 +- R/PostREQquake.R | 2 R/PostVquake.R | 2 R/Qrangedatetime.R | 2 R/RElocateEQ.R | 2 R/RQ.R | 6 +- R/ReSet.R | 2 R/SELstaDB.R | 14 ++-- R/SaveCSV.R | 4 - R/SavePF.R | 2 R/UPdateEQLOC.R | 6 +- R/Vlocate.R | 14 ++-- R/XYSETUP.R | 6 +- R/Y2Pphase.R | 2 R/chak.R | 8 +- R/clusterWPX.R | 4 - R/contPFarrivals.R | 12 ++-- R/convertseis2R.R | 2 R/doAmap.R | 8 +- R/editPIX.R | 10 +-- R/eqwrapup.R | 6 +- R/gMAP.R | 4 - R/getGAP.R | 8 +- R/getregionals.R | 2 R/getresidTT.R | 6 +- R/imageINFLUENCE.R | 6 +- R/plotEQ.R | 6 +- R/plotJACKLLZ.R | 2 R/prepPDE.R | 6 +- R/rglGEOmapXY.R | 50 ++++++++--------- R/ripper.R | 2 R/viewCHAC.R | 24 ++++---- R/viewseis.R | 20 +++--- man/ASW.vel.Rd | 2 man/DoRLocate.Rd | 6 +- man/EQXYresid.Rd | 4 - man/GETpsTT.Rd | 6 +- man/Klocate.Rd | 5 + man/MeanStaDist.Rd | 2 man/OnePerSta.Rd | 6 +- man/PCfiledatetime.Rd | 2 man/Pick3.Rd | 2 man/Qrangedatetime.Rd | 1 man/RElocateEQ.Rd | 7 +- man/Vlocate.Rd | 2 man/XYerror.bars.Rd | 6 +- man/XYlocate.Rd | 15 +++-- man/contPFarrivals.Rd | 6 +- man/eqlipse.Rd | 6 +- man/getGAP.Rd | 6 +- man/legitWPX.Rd | 5 + man/plotEQ.Rd | 4 + man/rglGEOmapXY.Rd | 6 +- man/viewseis.Rd | 6 +- 73 files changed, 331 insertions(+), 308 deletions(-)
Title: Graphics for Spherical Distributions and Earthquake Focal
Mechanisms
Description: Graphics for statistics on a sphere, as applied to geological fault data, crystallography, earthquake focal mechanisms, radiation patterns, ternary plots and geographical/geological maps. Non-double couple plotting of focal spheres and source type maps are included for statistical analysis of moment tensors.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
Diff between RFOC versions 3.2 dated 2012-12-18 and 3.3-3 dated 2014-01-06
DESCRIPTION | 21 +++---- MD5 | 134 ++++++++++++++++++++++++------------------------- NAMESPACE | 6 ++ R/AXpoint.R | 2 R/BOXarrows3D.R | 4 - R/Beachfoc.R | 2 R/CONVERTSDR.R | 12 ++-- R/FixDip.R | 4 - R/GetRake.R | 4 - R/PROJ3D.R | 4 - R/PlotPTsmooth.R | 6 +- R/Pradfoc.R | 2 R/Preflect.R | 2 R/SHradfoc.R | 2 R/SVradfoc.R | 2 R/ShadowCLVD.R | 2 R/TEACHFOC.R | 2 R/TapeBase.R | 6 +- R/Z3Darrow.R | 10 +-- R/addPTarrows.R | 12 ++-- R/circtics.R | 2 R/doNonDouble.R | 2 R/forcerighthand.R | 4 - R/getCMT.R | 2 R/getUWfocs.R | 4 - R/justfocXY.R | 2 R/makeblock3D.R | 12 ++-- R/makenet.R | 2 R/nipXY.R | 4 - R/pglyph3D.R | 4 - R/phong3D.R | 4 - R/plotMEC.R | 2 R/plotmanyfoc.R | 6 +- R/spherefocgeo.R | 4 - R/spline.arrow.R | 6 +- R/ternfocgeo.R | 4 - R/testrightHAND.R | 4 - R/tocartL.R | 2 data/KAMCORN.RData |binary data/PKAM.RData |binary data/Vmoments.rda |binary data/jimbo.rda |binary data/widdenMoments.rda |binary man/CROSSL.Rd | 2 man/FOCangles.Rd | 4 + man/FixDip.Rd | 2 man/KAMCORN.Rd | 9 ++- man/MapNonDouble.Rd | 16 +++-- man/MomentDist.Rd | 6 +- man/PKAM.Rd | 2 man/PTaxes.Rd | 3 - man/PlotPTsmooth.Rd | 1 man/StrikeDip.Rd | 12 ++-- man/cross.prod.Rd | 2 man/forcerighthand.Rd | 3 - man/getUWfocs.Rd | 9 +-- man/hudson.net.Rd | 14 +++-- man/hudson.plot.Rd | 11 ++-- man/imageSCALE.Rd | 6 +- man/nodalLines.Rd | 6 +- man/plotmanyfoc.Rd | 10 ++- man/readCMT.Rd | 6 +- man/spherefocgeo.Rd | 20 ++++--- man/spline.arrow.Rd | 4 + man/ternfocgeo.Rd | 22 +++++--- man/testrightHAND.Rd | 10 ++- man/tocartL.Rd | 2 man/xsecmanyfoc.Rd | 15 +++-- 68 files changed, 280 insertions(+), 226 deletions(-)
Title: Orthogonalizing Expectation maximization
Description: Fit penalized regression with orthogonalizing EM algorithm
Author: Bin Dai
Maintainer: Bin Dai
Diff between oem versions 1.02 dated 2012-12-30 and 1.02.1 dated 2014-01-06
DESCRIPTION | 11 ++++++----- MD5 | 6 +++--- NAMESPACE | 2 +- src/oem.cpp | 14 +++++++------- 4 files changed, 17 insertions(+), 16 deletions(-)
Title: Generalized Turnbull's estimator
Description: Generalized Turnbull's estimator proposed by Dehghan and Duchesne
(2011).
Author: Mohammad Hossein Dehghan, Thierry Duchesne and Sophie Baillargeon
Maintainer: Thierry Duchesne
Diff between gte versions 1.2 dated 2013-01-24 and 1.2-1 dated 2014-01-06
gte-1.2-1/gte/DESCRIPTION | 17 ++++++++--------- gte-1.2-1/gte/MD5 | 13 +++++-------- gte-1.2-1/gte/NAMESPACE | 4 ++-- gte-1.2-1/gte/NEWS | 5 +++++ gte-1.2-1/gte/R/gte-package.R | 4 ++-- gte-1.2-1/gte/man/gte-package.Rd | 2 +- gte-1.2/gte/inst |only 7 files changed, 23 insertions(+), 22 deletions(-)
Title: Bayesian semi and nonparametric growth curve models that
additionally include multiple membership random effects.
Description: Employs a non-parametric formulation for by-subject random
effect parameters to borrow strength over a constrained number
of repeated measurement waves in a fashion that permits
multiple effects per subject. One class of models employs a
Dirichlet process (DP) prior for the subject random effects and
includes an additional set of random effects that utilize a
different grouping factor and are mapped back to clients
through a multiple membership weight matrix; e.g. treatment(s)
exposure or dosage. A second class of models employs a
dependent DP (DDP) prior for the subject random effects that
directly incorporates the multiple membership pattern.
Author: Terrance Savitsky
Maintainer: "terrance savitsky"
Diff between growcurves versions 0.2.3.5 dated 2013-05-22 and 0.2.3.6 dated 2014-01-06
DESCRIPTION | 15 +++++++-------- MD5 | 6 +++--- NAMESPACE | 1 - src/mmmult.cpp | 2 +- 4 files changed, 11 insertions(+), 13 deletions(-)
Title: Statistical Procedures for Agricultural Research
Description: Agricolae was presented in the thesis "A statistical analysis tool for agricultural research" to obtain the degree of Master on science, mention Systems Engineering, Faculty of Industrial and Systems Engineering, National Engineering University (UNI), Lima-Peru Agricolae offers extensive functionality on experimental design especially for agricultural and plant breeding experiments, which can also be useful for other purposes. It supports planning of lattice, Alpha, Cyclic, Complete Block, Latin Square, Graeco-Latin Squares, augmented block, factorial, split and strip plot designs. There are also various analysis facilities for experimental data, e.g. treatment comparison procedures and several non-parametric tests comparison, biodiversity indexes and consensus cluster.
Author: Felipe de Mendiburu
Maintainer: Felipe de Mendiburu
Diff between agricolae versions 1.1-6 dated 2013-12-02 and 1.1-7 dated 2014-01-06
DESCRIPTION | 8 +- MD5 | 70 +++++++++---------- R/BIB.test.R | 4 - R/DAU.test.R | 2 R/HSD.test.R | 4 - R/LSD.test.R | 6 + R/PBIB.test.r | 4 - R/SNK.test.R | 4 - R/bar.err.R | 17 +++- R/duncan.test.r | 4 - R/durbin.test.R | 4 - R/friedman.R | 4 - R/graph.freq.R | 20 ++++- R/intervals.freq.R | 16 ++-- R/join.freq.R | 11 ++- R/kruskal.R | 5 - R/ojiva.freq.R | 34 ++++++--- R/plot.graph.freq.R | 171 ++++++++++++++++++++++++----------------------- R/scheffe.test.R | 4 - R/sturges.freq.R | 2 R/waerden.test.R | 5 - R/waller.test.R | 6 + inst/doc/ENagricolae.pdf |binary inst/doc/SPagricolae.pdf |binary man/HSD.test.Rd | 2 man/LSD.test.Rd | 2 man/agricolae-package.Rd | 4 - man/bar.err.Rd | 20 ++--- man/graph.freq.Rd | 20 +++-- man/intervals.freq.Rd | 14 +-- man/join.freq.Rd | 30 ++------ man/ojiva.freq.Rd | 24 +++--- man/order.group.Rd | 8 +- man/plot.graph.freq.Rd | 20 +++-- man/sturges.freq.Rd | 2 man/waller.test.Rd | 12 +-- 36 files changed, 310 insertions(+), 253 deletions(-)
Title: Rcpp integration for Armadillo templated linear algebra library
Description: R and Armadillo integration using Rcpp
Armadillo is a templated C++ linear algebra library (by Conrad Sanderson)
that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
A delayed evaluation approach is employed (during compile time) to combine
several operations into one, and to reduce (or eliminate) the need for
temporaries. This is accomplished through recursive templates and template
meta-programming.
This library is useful if C++ has been decided as the language of choice
(due to speed and/or integration capabilities), rather than another language.
The RcppArmadillo package includes the header files from the templated
Armadillo library (currently version 3.920.1). Thus users do not need to
install Armadillo itself in order to use RcppArmadillo.
This Armadillo integration provides a nice illustration of the
capabilities of the Rcpp package for seamless R and C++ integration.
Armadillo is licensed under the MPL 2.0, while RcppArmadillo (the Rcpp
bindings/bridge to Armadillo) is licensed under the GNU GPL version 2
or later, as is the rest of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Dirk Eddelbuettel
Diff between RcppArmadillo versions 0.3.930.1 dated 2013-12-10 and 0.4.000 dated 2014-01-06
RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/cmath_wrap.hpp |only RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/fn_eig.hpp |only RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/format_wrap.hpp |only RcppArmadillo-0.3.930.1/RcppArmadillo/inst/include/armadillo_bits/undefine_conflicts.hpp |only RcppArmadillo-0.4.000/RcppArmadillo/ChangeLog | 7 RcppArmadillo-0.4.000/RcppArmadillo/DESCRIPTION | 8 RcppArmadillo-0.4.000/RcppArmadillo/MD5 | 151 - RcppArmadillo-0.4.000/RcppArmadillo/inst/NEWS.Rd | 52 RcppArmadillo-0.4.000/RcppArmadillo/inst/doc/RcppArmadillo-intro.pdf |binary RcppArmadillo-0.4.000/RcppArmadillo/inst/doc/RcppArmadillo-unitTests.pdf |binary RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo | 68 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/Col_bones.hpp | 4 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/Col_meat.hpp | 40 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/Cube_bones.hpp | 6 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/Cube_meat.hpp | 52 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/Mat_meat.hpp | 16 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/Row_bones.hpp | 4 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/Row_meat.hpp | 38 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/SpMat_bones.hpp | 6 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/SpMat_meat.hpp | 4 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/arma_boost.hpp |only RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/arma_cmath.hpp |only RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/arma_config.hpp | 19 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/arma_static_check.hpp | 14 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/arma_version.hpp | 8 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/arpack_bones.hpp |only RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/arpack_wrapper.hpp |only RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/arrayops_bones.hpp | 5 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/arrayops_meat.hpp | 87 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/auxlib_bones.hpp | 41 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/auxlib_meat.hpp | 1026 ++++++---- RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/compiler_setup.hpp | 225 +- RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/config.hpp | 62 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/debug.hpp | 31 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_cond.hpp |only RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_det.hpp | 2 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_eig_gen.hpp |only RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_eig_pair.hpp |only RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_eig_sym.hpp |only RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_eigs_gen.hpp |only RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_eigs_sym.hpp |only RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_elem.hpp | 26 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_find.hpp |only RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_hist.hpp | 90 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_histc.hpp | 52 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_inplace_strans.hpp | 2 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_inplace_trans.hpp | 8 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_inv.hpp | 71 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_misc.hpp | 8 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_pinv.hpp | 4 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_rank.hpp | 16 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_repmat.hpp | 58 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_sort.hpp | 2 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_sort_index.hpp | 2 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_speye.hpp | 10 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_spones.hpp | 11 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_svd.hpp | 32 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_unique.hpp | 48 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/fn_zeros.hpp | 27 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/glue_hist_bones.hpp | 30 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/glue_hist_meat.hpp | 462 ++-- RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/glue_histc_bones.hpp | 32 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/glue_histc_meat.hpp | 348 +-- RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/glue_times_bones.hpp | 17 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/glue_times_meat.hpp | 142 + RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/lapack_bones.hpp | 20 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/lapack_wrapper.hpp | 64 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/op_inv_meat.hpp | 2 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/op_misc_bones.hpp | 10 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/op_misc_meat.hpp | 12 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/op_repmat_meat.hpp | 186 - RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/op_resize_meat.hpp | 26 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/op_vectorise_bones.hpp | 13 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/op_vectorise_meat.hpp | 88 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/operator_ostream.hpp | 20 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/podarray_meat.hpp | 4 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/sp_auxlib_bones.hpp |only RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/sp_auxlib_meat.hpp |only RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/strip.hpp | 25 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/subview_elem1_bones.hpp | 10 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/subview_elem1_meat.hpp | 12 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/unwrap.hpp | 8 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/unwrap_cube.hpp | 2 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/wall_clock_bones.hpp | 3 RcppArmadillo-0.4.000/RcppArmadillo/inst/include/armadillo_bits/wall_clock_meat.hpp | 10 85 files changed, 2433 insertions(+), 1556 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-02-09 0.2
Title: Analysis of Spatially Distributed Data
Description: This package is a processing program for spatially
distributed data. It features graphing tools, query building, and
polygon clipping. A graphical user interface is provided.
Author: Jason C. Fisher
Maintainer: Jason C. Fisher
Diff between RSurvey versions 0.7-9 dated 2013-11-11 and 0.8-0 dated 2014-01-06
RSurvey-0.7-9/RSurvey/R/ImportData.R |only RSurvey-0.7-9/RSurvey/man/ImportData.Rd |only RSurvey-0.8-0/RSurvey/DESCRIPTION | 10 - RSurvey-0.8-0/RSurvey/MD5 | 74 ++++++------ RSurvey-0.8-0/RSurvey/NAMESPACE | 3 RSurvey-0.8-0/RSurvey/NEWS | 45 ++++--- RSurvey-0.8-0/RSurvey/R/Autocrop.R | 4 RSurvey-0.8-0/RSurvey/R/BuildHistogram.R | 123 +++++++++++++++------ RSurvey-0.8-0/RSurvey/R/BuildPackage.R | 2 RSurvey-0.8-0/RSurvey/R/ChoosePch.R | 2 RSurvey-0.8-0/RSurvey/R/CutoutPolygon.R | 2 RSurvey-0.8-0/RSurvey/R/EditData.R | 41 +++---- RSurvey-0.8-0/RSurvey/R/EditFunction.R | 74 ++++++++---- RSurvey-0.8-0/RSurvey/R/EvalFunction.R | 4 RSurvey-0.8-0/RSurvey/R/ExportData.R | 17 +- RSurvey-0.8-0/RSurvey/R/FormatDateTime.R | 4 RSurvey-0.8-0/RSurvey/R/GetFile.R | 41 +++---- RSurvey-0.8-0/RSurvey/R/ImportPackageData.R | 19 +-- RSurvey-0.8-0/RSurvey/R/ImportSpreadsheetData.R |only RSurvey-0.8-0/RSurvey/R/ImportTextData.R |only RSurvey-0.8-0/RSurvey/R/ManagePolygons.R | 6 - RSurvey-0.8-0/RSurvey/R/ManageVariables.R | 16 +- RSurvey-0.8-0/RSurvey/R/OpenRSurvey.R | 114 ++++++++++++------- RSurvey-0.8-0/RSurvey/R/Plot2d.R | 2 RSurvey-0.8-0/RSurvey/R/ProcessData.R | 2 RSurvey-0.8-0/RSurvey/README.md | 23 +-- RSurvey-0.8-0/RSurvey/data/ex.data.rda |binary RSurvey-0.8-0/RSurvey/data/ex.project.RData |binary RSurvey-0.8-0/RSurvey/inst/extdata/ex.data.csv | 2 RSurvey-0.8-0/RSurvey/inst/extdata/ex.data.xlsx |binary RSurvey-0.8-0/RSurvey/man/BuildHistogram.Rd | 3 RSurvey-0.8-0/RSurvey/man/Data.Rd | 2 RSurvey-0.8-0/RSurvey/man/EditData.Rd | 2 RSurvey-0.8-0/RSurvey/man/FormatDateTime.Rd | 2 RSurvey-0.8-0/RSurvey/man/ImportPackageData.Rd | 4 RSurvey-0.8-0/RSurvey/man/ImportSpreadsheetData.Rd |only RSurvey-0.8-0/RSurvey/man/ImportTextData.Rd |only RSurvey-0.8-0/RSurvey/man/ManageVariables.Rd | 2 RSurvey-0.8-0/RSurvey/man/POSIXct2Character.Rd | 2 RSurvey-0.8-0/RSurvey/man/ProcessData.Rd | 2 RSurvey-0.8-0/RSurvey/man/ex.data.Rd | 12 -- 41 files changed, 392 insertions(+), 269 deletions(-)
Title: R Commander Plug-in for MPA Statistics
Description: This package provides an R Commander plugin that offers a
unified menu of new and pre-existing statistical functions
related to public management and policy analysis statistics.
Functions and menus have been renamed according to the usage
in PMGT 630 in the Master of Public Administration program at
Brigham Young University.
Author: Andrew Heiss, Richard Payne, Christa Schank
Maintainer: Andrew Heiss
Diff between RcmdrPlugin.MPAStats versions 1.1.3 dated 2013-09-07 and 1.1.4 dated 2014-01-06
CHANGELOG | 9 ++++- DESCRIPTION | 8 ++-- MD5 | 38 ++++++++++----------- R/DataframeSummary.R | 48 ++++++++++++++++++++------- R/RcmdrPlugin.MPAStats.R | 2 - R/anova.R | 17 +++++++-- R/bivariate-analysis.R | 63 +++++++++++++++++++++++++----------- R/chi-square.R | 17 ++++++--- R/confidence-intervals.R | 8 +++- R/kruskal-wallis.R | 18 +++++++--- R/logistic-regression.R | 18 +++++++--- R/multiple-regression.R | 22 ++++++++---- R/ologit-regression.R | 23 ++++++++----- R/t-test.R | 48 ++++++++++++++++++++------- R/wilcoxon-mann-whitney.R | 17 ++++++--- R/wilcoxon-rank.R | 18 +++++++--- README.md | 2 - inst/CHANGELOG | 9 ++++- inst/etc/menus.txt | 35 +++++++++++++++++++- man/RcmdrPlugin.MPAStats-package.Rd | 4 +- 20 files changed, 303 insertions(+), 121 deletions(-)
More information about RcmdrPlugin.MPAStats at CRAN
Permanent link
Title: Merging linkage maps by linear programming
Description: LPmerge creates a consensus genetic map by merging linkage maps from different populations. The software uses linear programming (LP) to efficiently minimize the mean absolute error between the consensus map and the linkage maps. This minimization is performed subject to linear inequality constraints that ensure the ordering of the markers in the linkage maps is preserved. When marker order is inconsistent between linkage maps, a minimum set of ordinal constraints is deleted to resolve the conflicts.
Author: Jeffrey Endelman
Maintainer: Jeffrey Endelman
Diff between LPmerge versions 1.4 dated 2013-08-04 and 1.5 dated 2014-01-06
LPmerge-1.4/LPmerge/inst/doc |only LPmerge-1.5/LPmerge/DESCRIPTION | 9 +++++---- LPmerge-1.5/LPmerge/MD5 | 9 +++------ LPmerge-1.5/LPmerge/R/LPmerge.R | 6 +++--- LPmerge-1.5/LPmerge/man/LPmerge.Rd | 35 +++++++++++++++++------------------ 5 files changed, 28 insertions(+), 31 deletions(-)
Title: Fused Lasso Latent Feature Model
Description: Fits the Fused Lasso Latent Feature model, which is used for modeling multi-sample aCGH data to identify regions of copy number variation (CNV). Produces a set of features that describe the patterns of CNV and a set of weights that describe the composition of each sample. Also provides functions for choosing the optimal tuning parameters and the appropriate number of features, and for estimating the false discovery rate.
Author: Gen Nowak [aut, cre],
Trevor Hastie [aut],
Jonathan R. Pollack [aut],
Robert Tibshirani [aut],
Nicholas Johnson [aut]
Maintainer: Gen Nowak
Diff between FLLat versions 1.0 dated 2011-06-05 and 1.1 dated 2014-01-06
FLLat-1.0/FLLat/inst/doc/.Rapp.history |only FLLat-1.1/FLLat/DESCRIPTION | 29 ++++----- FLLat-1.1/FLLat/MD5 |only FLLat-1.1/FLLat/NAMESPACE | 3 FLLat-1.1/FLLat/NEWS | 17 ++++- FLLat-1.1/FLLat/R/CheckPars.R | 2 FLLat-1.1/FLLat/R/FLLat.FDR.R |only FLLat-1.1/FLLat/R/plot.FDR.R |only FLLat-1.1/FLLat/R/plot.PVE.R | 2 FLLat-1.1/FLLat/build |only FLLat-1.1/FLLat/inst/doc/FLLat_tutorial.R |only FLLat-1.1/FLLat/inst/doc/FLLat_tutorial.pdf |binary FLLat-1.1/FLLat/inst/doc/FLLat_tutorial.rnw | 86 +++++++++++++++++++++++----- FLLat-1.1/FLLat/man/FLLat.BIC.Rd | 4 - FLLat-1.1/FLLat/man/FLLat.FDR.Rd |only FLLat-1.1/FLLat/man/FLLat.PVE.Rd | 18 ++--- FLLat-1.1/FLLat/man/FLLat.Rd | 18 +++-- FLLat-1.1/FLLat/man/plot.FLLat.Rd | 5 - FLLat-1.1/FLLat/src/Lat_L2.cpp | 23 ++++++- FLLat-1.1/FLLat/vignettes |only 20 files changed, 148 insertions(+), 59 deletions(-)
Title: An R package for the analysis of epidemiological data
Description: An R package for the analysis of epidemiological data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, and computing confidence intervals around incidence risk and incidence rate estimates. Miscellaneous functions for use in meta-analysis, diagnostic test interpretation, and sample size calculations.
Author: Mark Stevenson
Maintainer: Mark Stevenson
Diff between epiR versions 0.9-51 dated 2013-11-20 and 0.9-53 dated 2014-01-06
DESCRIPTION | 10 MD5 | 46 NAMESPACE | 9 R/epi.2by2.r | 2889 +++++++++++++++++++++++++++--------------------- R/epi.tests.R | 561 +++++---- man/epi.2by2.Rd | 83 - man/epi.cluster1size.Rd | 4 man/epi.cluster2size.Rd | 32 man/epi.conf.Rd | 22 man/epi.cp.Rd | 2 man/epi.detectsize.Rd | 6 man/epi.dms.Rd | 6 man/epi.edr.Rd | 9 man/epi.herdtest.Rd | 4 man/epi.indirectadj.Rd | 4 man/epi.interaction.Rd | 4 man/epi.ltd.Rd | 4 man/epi.nomogram.Rd | 4 man/epi.prcc.Rd | 10 man/epi.simplesize.Rd | 8 man/epi.smd.Rd | 2 man/epi.stratasize.Rd | 10 man/epi.studysize.Rd | 18 man/epi.tests.Rd | 22 24 files changed, 2117 insertions(+), 1652 deletions(-)