Title: Small-Sample Adjustments for Wald tests Using Sandwich
Estimators
Diff between saws versions 0.9-6.0 dated 2013-04-05 and 0.9-6.1 dated 2014-01-22
Description: Tests coefficients with sandwich estimator of variance and with small samples. Regression types supported are gee, linear regression, and conditional logistic regression.
Author: Michael P. Fay
Maintainer: Michael P. Fay
saws-0.9-6.0/saws/inst/doc/Article.numbers.txt |only
saws-0.9-6.0/saws/inst/doc/FayGraubard.R |only
saws-0.9-6.0/saws/inst/doc/FayGraubard.Rnw |only
saws-0.9-6.1/saws/DESCRIPTION | 16 +++++++---------
saws-0.9-6.1/saws/MD5 | 22 ++++++++++------------
saws-0.9-6.1/saws/NAMESPACE | 2 ++
saws-0.9-6.1/saws/NEWS | 4 ++++
saws-0.9-6.1/saws/inst/doc/Article.numbers.pdf |only
saws-0.9-6.1/saws/man/clogistCalc.Rd | 3 ++-
saws-0.9-6.1/saws/man/lmfitSaws.Rd | 2 +-
saws-0.9-6.1/saws/man/mgee.Rd | 6 +++++-
saws-0.9-6.1/saws/man/saws-internal.Rd | 5 ++++-
saws-0.9-6.1/saws/man/saws-package.Rd | 2 +-
saws-0.9-6.1/saws/man/saws.Rd | 2 +-
14 files changed, 37 insertions(+), 27 deletions(-)
Title: Simple interface to the estimation and plotting of IRT models
Diff between irtoys versions 0.1.6 dated 2012-09-26 and 0.1.7 dated 2014-01-22
Description: Provides a simple common interface to the estimation of item
parameters in IRT models for binary responses with three different programs
(ICL, BILOG-MG, and ltm, and a variety of functions useful with IRT models.
Author: Ivailo Partchev
Maintainer: Ivailo Partchev
DESCRIPTION | 16 +-
MD5 | 62 ++++++-----
NAMESPACE | 3
NEWS |only
R/ability.R | 29 +----
R/estimate.R | 1
R/irtoys-package.R | 15 ++
R/itemfit.R | 6 -
R/nonpar.R | 4
R/readin.R | 4
R/scale.R | 2
R/tracelines.R | 78 ++++++--------
R/utils.R | 273 ++++++++++++++++++++++++++++-----------------------
data/Scored2pl.RData |only
man/Scored2pl.Rd |only
man/api.Rd | 3
man/dpv.Rd | 3
man/eap.Rd | 3
man/iif.Rd | 3
man/irf.Rd | 3
man/itf.Rd | 3
man/mlebme.Rd | 3
man/npp.Rd | 4
man/plot.iif.Rd | 5
man/plot.irf.Rd | 5
man/plot.tif.Rd | 3
man/plot.trf.Rd | 3
man/sca.Rd | 2
man/scp.Rd | 3
man/tet.Rd |only
man/tif.Rd | 3
man/trf.Rd | 3
man/tsc.Rd | 5
man/wle.Rd | 3
34 files changed, 287 insertions(+), 266 deletions(-)
Title: Weighted Logrank Tests and NPMLE for interval censored data
Diff between interval versions 1.1-0.0 dated 2013-06-05 and 1.1-0.1 dated 2014-01-22
Description: Functions to fit nonparametric survival curves, plot them, and perform logrank or Wilcoxon type tests.
Author: Michael P. Fay
Maintainer: Michael P. Fay
interval-1.1-0.0/interval/inst/doc/interval.bib |only
interval-1.1-0.1/interval/DESCRIPTION | 12 +++++-------
interval-1.1-0.1/interval/MD5 | 14 ++++++++------
interval-1.1-0.1/interval/NAMESPACE | 2 ++
interval-1.1-0.1/interval/NEWS | 11 +++++++++++
interval-1.1-0.1/interval/build |only
interval-1.1-0.1/interval/inst/doc/intervalCensoring.pdf |binary
interval-1.1-0.1/interval/man/ictest.Rd | 4 ++--
interval-1.1-0.1/interval/vignettes |only
9 files changed, 28 insertions(+), 15 deletions(-)
Title: Time series management, analysis and interpolation for
hydrological modelling
Diff between hydroTSM versions 0.4-1 dated 2013-06-01 and 0.4-2-1 dated 2014-01-22
Description: S3 functions for management, analysis, interpolation and plotting of time series used in hydrology and related environmental sciences. In particular, this package is highly oriented to hydrological modelling tasks. The focus of this package has been put in providing a collection of tools useful for the daily work of hydrologists (although an effort was made to optimise each function as much as possible, functionality has had priority over speed). Bugs / comments / questions / collaboration of any kind are very welcomed, and in particular, datasets that can be included in this package for academic purposes.
Author: Mauricio Zambrano-Bigiarini [aut, cre, cph]
Maintainer: Mauricio Zambrano-Bigiarini
hydroTSM-0.4-1/hydroTSM/WhatsNew.txt |only
hydroTSM-0.4-2-1/hydroTSM/ChangeLog |only
hydroTSM-0.4-2-1/hydroTSM/DESCRIPTION | 28
hydroTSM-0.4-2-1/hydroTSM/MD5 | 53
hydroTSM-0.4-2-1/hydroTSM/NEWS | 35
hydroTSM-0.4-2-1/hydroTSM/R/annualfunction.R | 29
hydroTSM-0.4-2-1/hydroTSM/R/daily2annual.R | 8
hydroTSM-0.4-2-1/hydroTSM/R/daily2monthly.R | 8
hydroTSM-0.4-2-1/hydroTSM/R/dm2seasonal.R | 18
hydroTSM-0.4-2-1/hydroTSM/R/dwi.R | 21
hydroTSM-0.4-2-1/hydroTSM/R/fdc.R | 40
hydroTSM-0.4-2-1/hydroTSM/R/hydrokrige.R | 39
hydroTSM-0.4-2-1/hydroTSM/R/hydroplot.R | 1411 +++++-----
hydroTSM-0.4-2-1/hydroTSM/R/monthlyfunction.R | 47
hydroTSM-0.4-2-1/hydroTSM/R/mspplot.R | 541 +--
hydroTSM-0.4-2-1/hydroTSM/R/seasonalfunction.R | 526 +--
hydroTSM-0.4-2-1/hydroTSM/R/sname2plot.R | 12
hydroTSM-0.4-2-1/hydroTSM/R/sname2ts.R | 287 +-
hydroTSM-0.4-2-1/hydroTSM/build |only
hydroTSM-0.4-2-1/hydroTSM/inst/doc/hydroTSM_Vignette.Rnw | 54
hydroTSM-0.4-2-1/hydroTSM/inst/doc/hydroTSM_Vignette.Rnw.backup |only
hydroTSM-0.4-2-1/hydroTSM/inst/doc/hydroTSM_Vignette.pdf |binary
hydroTSM-0.4-2-1/hydroTSM/man/dip.Rd | 2
hydroTSM-0.4-2-1/hydroTSM/man/diy.Rd | 2
hydroTSM-0.4-2-1/hydroTSM/man/dwi.Rd | 3
hydroTSM-0.4-2-1/hydroTSM/man/fdc.Rd | 4
hydroTSM-0.4-2-1/hydroTSM/man/hydroTSM-package.Rd | 10
hydroTSM-0.4-2-1/hydroTSM/man/mip.Rd | 2
hydroTSM-0.4-2-1/hydroTSM/man/mspplot.Rd | 2
hydroTSM-0.4-2-1/hydroTSM/vignettes |only
30 files changed, 1601 insertions(+), 1581 deletions(-)
Title: An R Package for Text Analysis
Diff between koRpus versions 0.05-3 dated 2013-12-21 and 0.05-4 dated 2014-01-22
Description: A set of tools to analyze texts. Includes, amongst others,
functions for automatic language detection, hyphenation, several indices of
lexical diversity (e.g., type token ratio, HD-D/vocd-D, MTLD) and
readability (e.g., Flesch, SMOG, LIX, Dale-Chall). Basic import functions
for language corpora are also provided, to enable frequency analyses
(supports Celex and Leipzig Corpora Collection file formats). #' Note: For
full functionality a local installation of TreeTagger is recommended. Also,
due to some restrictions on CRAN, the full package sources are only
available from the project homepage. Be encouraged to send feedback to the
author(s)!
Author: m.eik michalke [aut, cre],
Earl Brown [ctb],
Alberto Mirisola [ctb],
Alexandre Brulet [ctb],
Laura Hauser [ctb]
Maintainer: m.eik michalke
ChangeLog | 8 ++++
DESCRIPTION | 8 ++--
MD5 | 16 ++++-----
R/koRpus-internal.R | 13 +++++--
R/koRpus-package.R | 4 +-
inst/CITATION | 8 ++--
inst/NEWS.Rd | 11 +++++-
inst/rkward/rkwarddev_koRpus_plugin_script_NG.R | 41 ++++++++++--------------
man/koRpus-package.Rd | 4 +-
9 files changed, 64 insertions(+), 49 deletions(-)
Title: Download, manipulate, and present data from the US Census
American Community Survey
Diff between acs versions 1.1 dated 2013-07-12 and 1.2 dated 2014-01-22
Description: Provides a general toolkit for downloading, managing, analyzing, and presenting data from the U.S. Census American Community Survey (ACS). Confidence intervals provided with the data are converted to standard errors to be bundled with estimates in complex acs objects. Package provides new methods to conduct standard operations and tests of significance on acs objects in statistically appropriate ways. Current version is 1.2 +/- .05.
Author: Ezra Haber Glenn
Maintainer: Ezra Haber Glenn
DESCRIPTION | 13 ++++++------
MD5 | 37 +++++++++++++++++------------------
NAMESPACE | 4 +++
R/acs.R | 12 +++++++++--
data/cpi.rda |binary
data/fips.american.indian.area.rda |binary
data/fips.county.rda |binary
data/fips.county.subdivision.rda |binary
data/fips.place.rda |binary
data/fips.school.rda |binary
data/fips.state.rda |binary
data/kansas07.rda |binary
data/kansas09.rda |binary
data/lawrence10.rda |binary
inst/extdata/acs_5yr_2012_var.xml.gz |only
man/acs-package.Rd | 6 ++---
man/acs.fetch.Rd | 4 +--
man/geo.lookup.Rd | 6 +++--
man/geo.make.Rd | 4 +--
man/geo.set-class.Rd | 6 +++--
20 files changed, 55 insertions(+), 37 deletions(-)
Title: Regression Modeling Strategies
Diff between rms versions 4.1-0 dated 2013-12-05 and 4.1-1 dated 2014-01-22
Description: Regression modeling, testing, estimation, validation,
graphics, prediction, and typesetting by storing enhanced model design
attributes in the fit. rms is a collection of functions that
assist with and streamline modeling. It also contains functions for
binary and ordinal logistic regression models, ordinal models for
continuous Y with a variety of distribution families, and the Buckley-James
multiple regression model for right-censored responses, and implements
penalized maximum likelihood estimation for logistic and ordinary
linear models. rms works with almost any regression model, but it
was especially written to work with binary or ordinal regression
models, Cox regression, accelerated failure time models,
ordinary linear models, the Buckley-James model, generalized least
squares for serially or spatially correlated observations, generalized
linear models, and quantile regression.
Author: Frank E Harrell Jr
Maintainer: Frank E Harrell Jr
rms-4.1-0/rms/R/Surv.s |only
rms-4.1-0/rms/man/Srv.Rd |only
rms-4.1-1/rms/DESCRIPTION | 10 +-
rms-4.1-1/rms/INDEX | 1
rms-4.1-1/rms/MD5 | 140 ++++++++++++++++-----------------
rms-4.1-1/rms/NAMESPACE | 4
rms-4.1-1/rms/NEWS | 14 +++
rms-4.1-1/rms/R/Function.rms.s | 4
rms-4.1-1/rms/R/Rq.s | 4
rms-4.1-1/rms/R/anova.rms.s | 6 -
rms-4.1-1/rms/R/bj.s | 38 ++++----
rms-4.1-1/rms/R/bootcov.s | 2
rms-4.1-1/rms/R/calibrate.cph.s | 10 +-
rms-4.1-1/rms/R/calibrate.psm.s | 6 -
rms-4.1-1/rms/R/cph.s | 18 ++--
rms-4.1-1/rms/R/cr.setup.s | 4
rms-4.1-1/rms/R/datadist.s | 12 +-
rms-4.1-1/rms/R/gendata.s | 2
rms-4.1-1/rms/R/groupkm.s | 6 -
rms-4.1-1/rms/R/hazard.ratio.plot.s | 12 +-
rms-4.1-1/rms/R/ia.operator.s | 8 -
rms-4.1-1/rms/R/ie.setup.s | 2
rms-4.1-1/rms/R/lrm.fit.s | 6 -
rms-4.1-1/rms/R/lrm.fit.strat.s | 8 -
rms-4.1-1/rms/R/nomogram.s | 2
rms-4.1-1/rms/R/ols.s | 3
rms-4.1-1/rms/R/plot.nomogram.s | 2
rms-4.1-1/rms/R/plot.xmean.ordinaly.s | 6 -
rms-4.1-1/rms/R/predab.resample.s | 2
rms-4.1-1/rms/R/predictrms.s | 3
rms-4.1-1/rms/R/psm.s | 23 ++---
rms-4.1-1/rms/R/residuals.lrm.s | 12 +-
rms-4.1-1/rms/R/rms.s | 2
rms-4.1-1/rms/R/rms.trans.s | 32 ++-----
rms-4.1-1/rms/R/rmsMisc.s | 4
rms-4.1-1/rms/R/sensuc.s | 2
rms-4.1-1/rms/R/summary.rms.s | 7 -
rms-4.1-1/rms/R/survest.cph.s | 2
rms-4.1-1/rms/R/survfit.formula.s | 6 -
rms-4.1-1/rms/R/survplot.rms.s | 7 -
rms-4.1-1/rms/R/survplot.survfit.s | 87 ++++++++++++--------
rms-4.1-1/rms/R/val.surv.s | 8 -
rms-4.1-1/rms/R/validate.cph.s | 17 +++-
rms-4.1-1/rms/R/validate.lrm.s | 2
rms-4.1-1/rms/demo/all.R | 4
rms-4.1-1/rms/man/Function.Rd | 2
rms-4.1-1/rms/man/Predict.Rd | 4
rms-4.1-1/rms/man/bj.Rd | 10 +-
rms-4.1-1/rms/man/calibrate.Rd | 2
rms-4.1-1/rms/man/cph.Rd | 20 ++--
rms-4.1-1/rms/man/groupkm.Rd | 6 -
rms-4.1-1/rms/man/hazard.ratio.plot.Rd | 6 -
rms-4.1-1/rms/man/ie.setup.Rd | 8 -
rms-4.1-1/rms/man/latex.cph.Rd | 2
rms-4.1-1/rms/man/nomogram.Rd | 4
rms-4.1-1/rms/man/plot.Predict.Rd | 4
rms-4.1-1/rms/man/pphsm.Rd | 2
rms-4.1-1/rms/man/psm.Rd | 14 +--
rms-4.1-1/rms/man/residuals.cph.Rd | 6 -
rms-4.1-1/rms/man/rms.Rd | 2
rms-4.1-1/rms/man/sensuc.Rd | 11 +-
rms-4.1-1/rms/man/survest.cph.Rd | 2
rms-4.1-1/rms/man/survest.psm.Rd | 2
rms-4.1-1/rms/man/survfit.cph.Rd | 3
rms-4.1-1/rms/man/survfit.formula.Rd | 13 +--
rms-4.1-1/rms/man/survplot.Rd | 55 ++++++++----
rms-4.1-1/rms/man/val.surv.Rd | 4
rms-4.1-1/rms/man/validate.Rd | 2
rms-4.1-1/rms/man/validate.cph.Rd | 10 +-
rms-4.1-1/rms/tests/cph.s | 10 +-
rms-4.1-1/rms/tests/lrm.ols.penalty.r |only
rms-4.1-1/rms/tests/nomogram.r |only
rms-4.1-1/rms/tests/orm.s | 2
73 files changed, 401 insertions(+), 355 deletions(-)
Title: Exact rate ratio test
Diff between rateratio.test versions 1.0-1 dated 2009-10-13 and 1.0-2 dated 2014-01-22
More information about rateratio.test at CRAN
Description: A function which performs exact rate ratio tests and returns an object of class htest.
Author: Michael Fay
Maintainer: Michael Fay
Changelog | 5 +++++
DESCRIPTION | 12 ++++++------
MD5 |only
NAMESPACE |only
R/rateratio.test.R | 6 +++---
build |only
inst/doc/rateratio.test.R |only
inst/doc/rateratio.test.pdf |binary
man/rateratio.Rd | 14 +++++++++++---
vignettes |only
10 files changed, 25 insertions(+), 12 deletions(-)
Permanent link
Title: diveRsity: Genetic diversity partition statistics and
Informative locus selection using Fst, Gst, Dest(Jost Chao)
G'st and In.
Diff between diveRsity versions 1.6.1 dated 2013-12-04 and 1.7.6 dated 2014-01-22
Description: diveRsity is a package which allows the calculation of both genetic
diversity partition statistics, genetic differentiation statistics and locus
informativeness for ancestry assignment. It also provides users with various
option to calculate bootstrapped 95% confidence intervals both across loci,
for pairwise population comparisons and to plot these results interactively.
V1.2 and up provides parallel computing capabilities and pairwise results
without bootstrapping. Weir and Cockerham's 1984 F-statistics are now also
calculated. Various plotting features are also provided. Chi-square tests of
genetic heterogeneity are also provided. Functionality for the calculation
of various diversity parameters is also possible for RAD-seq derived SNP
data sets containing thousands of marker loci. A shiny application for the
development of microsatellite multiplexes is also available
Author: Kevin Keenan
Maintainer: Kevin Keenan
diveRsity-1.6.1/diveRsity/inst/doc/diveRsity.R |only
diveRsity-1.7.6/diveRsity/DESCRIPTION | 27
diveRsity-1.7.6/diveRsity/MD5 | 19
diveRsity-1.7.6/diveRsity/NAMESPACE | 42
diveRsity-1.7.6/diveRsity/R/diveRsity-code.R |20077 +++++++++++-----------
diveRsity-1.7.6/diveRsity/data/pop_stats.rda |binary
diveRsity-1.7.6/diveRsity/inst/doc/diveRsity.Rnw | 3070 +--
diveRsity-1.7.6/diveRsity/inst/doc/diveRsity.pdf |binary
diveRsity-1.7.6/diveRsity/man/divPart.Rd | 202
diveRsity-1.7.6/diveRsity/man/fastDivPart.Rd | 201
diveRsity-1.7.6/diveRsity/vignettes/diveRsity.Rnw | 3070 +--
11 files changed, 13431 insertions(+), 13277 deletions(-)
Title: Survival Analysis
Diff between survival versions 2.37-6 dated 2014-01-16 and 2.37-7 dated 2014-01-22
Description: survival analysis: descriptive statistics, two-sample
tests, parametric accelerated failure models, Cox model. Delayed entry
(truncation) allowed for all models; interval censoring for parametric
models. Case-cohort designs.
Author: Terry M Therneau [aut, cre],
Thomas Lumley [ctb, trl] (original S->R port and maintainer until 2009)
Maintainer: Terry M Therneau
DESCRIPTION | 13 ++++++-------
MD5 | 20 ++++++++++----------
R/plot.survfit.R | 16 ++++++++++------
inst/NEWS.Rd | 12 ++++++++++++
inst/doc/adjcurve.R | 24 ++++++++++--------------
inst/doc/adjcurve.Rnw | 19 +++++++++----------
inst/doc/adjcurve.pdf |binary
inst/doc/sourcecode.pdf |binary
inst/doc/tests.pdf |binary
inst/doc/timedep.pdf |binary
vignettes/adjcurve.Rnw | 19 +++++++++----------
11 files changed, 66 insertions(+), 57 deletions(-)
Title: Bayesian emulation, calibration and validation of computer
models
Diff between SAVE versions 0.9.3.7 dated 2013-07-01 and 0.9.3.8.4 dated 2014-01-22
Description: Implements Bayesian statistical methodology for the
analysis of complex computer models.
It allows for the emulation, calibration, and validation of computer models,
following methodology described in Bayarri et al 2007, Technometrics.
Author: Jesus Palomo [aut, cre],
Gonzalo Garcia-Donato [aut],
Rui Paulo [aut],
James Berger [ctb],
Maria Jesus Bayarri [ctb],
Jerome Sacks [ctb]
Maintainer: Jesus Palomo
SAVE-0.9.3.7/SAVE/inst/doc/SAVE.R |only
SAVE-0.9.3.7/SAVE/vignettes/SAVE.bbl |only
SAVE-0.9.3.7/SAVE/vignettes/SAVE.blg |only
SAVE-0.9.3.7/SAVE/vignettes/SAVE.dvi |only
SAVE-0.9.3.7/SAVE/vignettes/jss.bst |only
SAVE-0.9.3.8.4/SAVE/DESCRIPTION | 47 +++--
SAVE-0.9.3.8.4/SAVE/MD5 | 63 +++----
SAVE-0.9.3.8.4/SAVE/NAMESPACE | 4
SAVE-0.9.3.8.4/SAVE/R/SAVE.R | 77 ++++++--
SAVE-0.9.3.8.4/SAVE/R/SAVE.controls.R |only
SAVE-0.9.3.8.4/SAVE/R/SAVEStructClass.R | 1
SAVE-0.9.3.8.4/SAVE/R/show.SAVE.R | 4
SAVE-0.9.3.8.4/SAVE/build |only
SAVE-0.9.3.8.4/SAVE/data/spotweldfield.rda |binary
SAVE-0.9.3.8.4/SAVE/data/spotweldmodel.rda |binary
SAVE-0.9.3.8.4/SAVE/data/synthfield.rda |binary
SAVE-0.9.3.8.4/SAVE/data/synthmodel.rda |binary
SAVE-0.9.3.8.4/SAVE/inst/NEWS |only
SAVE-0.9.3.8.4/SAVE/inst/doc/SAVE.Rnw | 38 ++--
SAVE-0.9.3.8.4/SAVE/inst/doc/SAVE.pdf |binary
SAVE-0.9.3.8.4/SAVE/inst/extdata/SpotweldExample.r | 141 +++++++++++++--
SAVE-0.9.3.8.4/SAVE/man/SAVE-package.Rd | 12 -
SAVE-0.9.3.8.4/SAVE/man/SAVE.Rd | 180 ++++++++++----------
SAVE-0.9.3.8.4/SAVE/man/SAVE.controls.Rd |only
SAVE-0.9.3.8.4/SAVE/man/Spotweld.Rd | 10 -
SAVE-0.9.3.8.4/SAVE/man/Synthetic.Rd | 4
SAVE-0.9.3.8.4/SAVE/man/bayesfit.SAVE.Rd | 10 -
SAVE-0.9.3.8.4/SAVE/man/plot.SAVE.Rd | 10 -
SAVE-0.9.3.8.4/SAVE/man/plot.predictreality.SAVE.Rd | 13 -
SAVE-0.9.3.8.4/SAVE/man/predictcode.SAVE.Rd | 12 -
SAVE-0.9.3.8.4/SAVE/man/predictreality.SAVE.Rd | 13 -
SAVE-0.9.3.8.4/SAVE/man/validate.SAVE.Rd | 15 -
SAVE-0.9.3.8.4/SAVE/src/iostuff.c | 31 ++-
SAVE-0.9.3.8.4/SAVE/src/optimize.c | 12 -
SAVE-0.9.3.8.4/SAVE/src/predict_reality.c | 7
SAVE-0.9.3.8.4/SAVE/src/setup.c | 53 +++--
SAVE-0.9.3.8.4/SAVE/vignettes/SAVE.Rnw | 52 ++---
37 files changed, 488 insertions(+), 321 deletions(-)
Title: Harrell Miscellaneous
Diff between Hmisc versions 3.13-0 dated 2013-11-21 and 3.14-0 dated 2014-01-22
Description: The Hmisc package contains many functions useful for data
analysis, high-level graphics, utility operations, functions for
computing sample size and power, importing datasets,
imputing missing values, advanced table making, variable clustering,
character string manipulation, conversion of S objects to LaTeX code,
and recoding variables.
Author: Frank E Harrell Jr
Maintainer: Frank E Harrell Jr
Hmisc-3.13-0/Hmisc/R/as.data.frame.Surv.s |only
Hmisc-3.13-0/Hmisc/R/comment.s |only
Hmisc-3.13-0/Hmisc/R/ldBands.s |only
Hmisc-3.13-0/Hmisc/R/mem.s |only
Hmisc-3.13-0/Hmisc/R/mulbar.chart.s |only
Hmisc-3.13-0/Hmisc/R/p.sunflowers.s |only
Hmisc-3.13-0/Hmisc/R/recode.s |only
Hmisc-3.13-0/Hmisc/R/survfit.km.s |only
Hmisc-3.13-0/Hmisc/man/ldBands.Rd |only
Hmisc-3.14-0/Hmisc/DESCRIPTION | 11
Hmisc-3.14-0/Hmisc/INDEX | 12
Hmisc-3.14-0/Hmisc/MD5 | 182 ++--
Hmisc-3.14-0/Hmisc/NAMESPACE | 7
Hmisc-3.14-0/Hmisc/NEWS | 44 +
Hmisc-3.14-0/Hmisc/R/AFirst.lib.s | 11
Hmisc-3.14-0/Hmisc/R/Cs.s | 17
Hmisc-3.14-0/Hmisc/R/Misc.s | 42 -
Hmisc-3.14-0/Hmisc/R/areg.s | 2
Hmisc-3.14-0/Hmisc/R/aregImpute.s | 2
Hmisc-3.14-0/Hmisc/R/biVar.s | 6
Hmisc-3.14-0/Hmisc/R/bootkm.s | 7
Hmisc-3.14-0/Hmisc/R/bystats.s | 15
Hmisc-3.14-0/Hmisc/R/dataRep.s | 5
Hmisc-3.14-0/Hmisc/R/describe.s | 8
Hmisc-3.14-0/Hmisc/R/discrete.s | 10
Hmisc-3.14-0/Hmisc/R/dotchart3.s | 23
Hmisc-3.14-0/Hmisc/R/ecdf.s | 4
Hmisc-3.14-0/Hmisc/R/errbar.s | 2
Hmisc-3.14-0/Hmisc/R/event.chart.s | 2
Hmisc-3.14-0/Hmisc/R/find.matches.s | 2
Hmisc-3.14-0/Hmisc/R/gbayes.s | 15
Hmisc-3.14-0/Hmisc/R/hist.data.frame.s | 2
Hmisc-3.14-0/Hmisc/R/histbackback.s | 54 -
Hmisc-3.14-0/Hmisc/R/hoeffd.s | 26
Hmisc-3.14-0/Hmisc/R/impute.s | 6
Hmisc-3.14-0/Hmisc/R/labcurve.s | 4
Hmisc-3.14-0/Hmisc/R/label.s | 43 -
Hmisc-3.14-0/Hmisc/R/latex.s | 142 +--
Hmisc-3.14-0/Hmisc/R/latexTabular.s |only
Hmisc-3.14-0/Hmisc/R/latexTherm.s | 10
Hmisc-3.14-0/Hmisc/R/list.tree.s | 4
Hmisc-3.14-0/Hmisc/R/minor.tick.s | 6
Hmisc-3.14-0/Hmisc/R/model.frame.default.s | 51 -
Hmisc-3.14-0/Hmisc/R/multLines.s |only
Hmisc-3.14-0/Hmisc/R/na.delete.s | 6
Hmisc-3.14-0/Hmisc/R/na.keep.s | 4
Hmisc-3.14-0/Hmisc/R/nobsY.s |only
Hmisc-3.14-0/Hmisc/R/panel.bpplot.s | 103 +-
Hmisc-3.14-0/Hmisc/R/plsmo.s | 14
Hmisc-3.14-0/Hmisc/R/pstamp.s | 28
Hmisc-3.14-0/Hmisc/R/rcorrp.cens.s | 22
Hmisc-3.14-0/Hmisc/R/redun.s | 2
Hmisc-3.14-0/Hmisc/R/responseSummary.s | 4
Hmisc-3.14-0/Hmisc/R/sas.get.s | 17
Hmisc-3.14-0/Hmisc/R/scat1d.s | 388 ++++-----
Hmisc-3.14-0/Hmisc/R/score.binary.s | 15
Hmisc-3.14-0/Hmisc/R/sedit.s | 3
Hmisc-3.14-0/Hmisc/R/show.pch.s | 3
Hmisc-3.14-0/Hmisc/R/somers2.s | 77 -
Hmisc-3.14-0/Hmisc/R/stata.get.s | 5
Hmisc-3.14-0/Hmisc/R/substi.s | 6
Hmisc-3.14-0/Hmisc/R/summary.formula.s | 85 +-
Hmisc-3.14-0/Hmisc/R/summaryM.s | 1213 +++++++++++++++--------------
Hmisc-3.14-0/Hmisc/R/summaryP.s |only
Hmisc-3.14-0/Hmisc/R/summaryS.s |only
Hmisc-3.14-0/Hmisc/R/sys.s | 15
Hmisc-3.14-0/Hmisc/R/t.test.cluster.s | 2
Hmisc-3.14-0/Hmisc/R/transace.s | 14
Hmisc-3.14-0/Hmisc/R/transcan.s | 7
Hmisc-3.14-0/Hmisc/R/translate.s | 15
Hmisc-3.14-0/Hmisc/R/units.s | 14
Hmisc-3.14-0/Hmisc/R/valueTags.s | 8
Hmisc-3.14-0/Hmisc/R/varclus.s | 387 ++++-----
Hmisc-3.14-0/Hmisc/R/wtd.stats.s | 28
Hmisc-3.14-0/Hmisc/R/xYplot.s | 6
Hmisc-3.14-0/Hmisc/R/ynbind.s |only
Hmisc-3.14-0/Hmisc/README.md | 7
Hmisc-3.14-0/Hmisc/inst/CHANGELOG | 183 ----
Hmisc-3.14-0/Hmisc/man/Hmisc-internal.Rd | 10
Hmisc-3.14-0/Hmisc/man/Misc.Rd | 15
Hmisc-3.14-0/Hmisc/man/Overview.Rd | 56 -
Hmisc-3.14-0/Hmisc/man/addMarginal.Rd |only
Hmisc-3.14-0/Hmisc/man/dotchart3.Rd | 2
Hmisc-3.14-0/Hmisc/man/getHdata.Rd | 3
Hmisc-3.14-0/Hmisc/man/label.Rd | 12
Hmisc-3.14-0/Hmisc/man/latex.Rd | 31
Hmisc-3.14-0/Hmisc/man/latexTabular.Rd |only
Hmisc-3.14-0/Hmisc/man/latexTherm.Rd | 5
Hmisc-3.14-0/Hmisc/man/multLines.Rd |only
Hmisc-3.14-0/Hmisc/man/nobsY.Rd |only
Hmisc-3.14-0/Hmisc/man/panel.bpplot.Rd | 74 +
Hmisc-3.14-0/Hmisc/man/plsmo.Rd | 6
Hmisc-3.14-0/Hmisc/man/prnz.Rd | 11
Hmisc-3.14-0/Hmisc/man/summarize.Rd | 7
Hmisc-3.14-0/Hmisc/man/summary.formula.Rd | 17
Hmisc-3.14-0/Hmisc/man/summaryM.Rd | 76 +
Hmisc-3.14-0/Hmisc/man/summaryP.Rd |only
Hmisc-3.14-0/Hmisc/man/summaryS.Rd |only
Hmisc-3.14-0/Hmisc/man/translate.Rd | 14
Hmisc-3.14-0/Hmisc/man/units.Rd | 17
Hmisc-3.14-0/Hmisc/man/varclus.Rd | 7
Hmisc-3.14-0/Hmisc/man/ynbind.Rd |only
Hmisc-3.14-0/Hmisc/tests/summaryP.r |only
Hmisc-3.14-0/Hmisc/tests/summaryS.r |only
104 files changed, 1783 insertions(+), 2038 deletions(-)
Title: A GTK GUI for fitting and comparing GLM and GLMM in R
Diff between R2STATS versions 0.68-32 dated 2013-10-09 and 0.68-34 dated 2014-01-22
Description: R2STATS is a gWidgetsRGtk2 GUI for fitting and comparing GLM or GLMM (based on Douglas Bates' lme4 package) in R. It is designed to make comparisons between numerous models easy, both numerically and graphically, which may be useful for teaching. Relevant plots are automatically produced for each model family. R2STATS is *not* a generic graphical interface for R, but a GUI for statistical modelling in a model comparison approach.
Author: Yvonnick Noel
Maintainer: Yvonnick Noel
DESCRIPTION | 13 +++++++------
MD5 | 20 ++++++++++----------
NAMESPACE | 7 +++++--
NEWS | 6 ++++++
R/r2sGLM.R | 30 +++++++++++++++++++++++++++++-
R/r2sGLMM.R | 23 +++++++++++++----------
R/r2sInterface.R | 6 +++---
inst/po/R-fr.po | 13 ++++++++-----
inst/po/es/LC_MESSAGES/R-R2STATS.mo |binary
inst/po/fr/LC_MESSAGES/R-R2STATS.mo |binary
inst/po/pl/LC_MESSAGES/R-R2STATS.mo |binary
11 files changed, 81 insertions(+), 37 deletions(-)
Title: Mann-Kendall test, Seasonal and Regional Kendall Tests
Diff between rkt versions 1.2 dated 2013-09-14 and 1.3 dated 2014-01-22
Description: Contains function rkt which computes the Mann-Kendall test (MK) and the Seasonal and the Regional Kendall Tests for trend (SKT and RKT) and Theil-Sen's slope estimator.
Author: Aldo Marchetto
Maintainer: Aldo Marchetto
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
R/print.rkt.R | 1 +
R/rkt.R | 13 +++++++------
man/rkt-package.Rd | 4 ++--
man/rkt.Rd | 2 ++
6 files changed, 21 insertions(+), 17 deletions(-)
Title: Categorical Regression Splines
Diff between crs versions 0.15-21 dated 2014-01-09 and 0.15-22 dated 2014-01-22
Description: This package provides for estimating regression splines that handle a mix of continuous and categorical (discrete) data often encountered in applied settings. I would like to gratefully acknowledge support from the Natural Sciences and Engineering Research Council of Canada (NSERC:www.nserc.ca), the Social Sciences and Humanities Research Council of Canada (SSHRC:www.sshrc.ca), and the Shared Hierarchical Academic Research Computing Network (SHARCNET:www.sharcnet.ca).
Author: Jeffrey S. Racine [aut, cre],
Zhenghua Nie [aut],
Brian D. Ripley [ctb] (stepCV.R)
Maintainer: Jeffrey S. Racine
CHANGELOG | 18
DESCRIPTION | 8
MD5 | 36 -
R/crs.R | 8
R/frscv.R | 190 +++----
R/frscvNOMAD.R | 15
R/krscv.R | 221 ++++----
R/krscvNOMAD.R | 11
R/np.regression.glp.R | 1107 +++++++++++++++++++--------------------------
R/zzz.R | 2
inst/doc/crs.pdf |binary
inst/doc/crs_faq.Rnw | 56 ++
inst/doc/crs_faq.pdf |binary
inst/doc/spline_primer.pdf |binary
man/crs.Rd | 4
man/frscvNOMAD.Rd | 6
man/krscvNOMAD.Rd | 4
man/npglpreg.Rd | 99 +++-
vignettes/crs_faq.Rnw | 56 ++
19 files changed, 956 insertions(+), 885 deletions(-)
Title: Computation of Bayes factors for interrupted time-series designs
Diff between BayesSingleSub versions 0.6.1 dated 2012-11-29 and 0.6.2 dated 2014-01-22
More information about BayesSingleSub at CRAN
Description: The BayesSingleSub package is a suite of functions for computing various Bayes factors for interrupted time-series, based on the models described in de Vries and Morey (2013).
Author: Richard D. Morey, Rivka de Vries
Maintainer: Richard D. Morey
DESCRIPTION | 20 -
MD5 | 32 +-
NEWS |only
R/notrendAR.R | 315 +++++++++++++++-----------
R/trendAR.R | 277 ++++++++++++++---------
build |only
inst |only
man/trendtest.Gibbs.AR.Rd | 36 ++-
man/trendtest.MC.AR.Rd | 7
man/ttest.Gibbs.AR.Rd | 32 +-
man/ttest.MCGQ.AR.Rd | 6
src/notrendAR.c | 497 +++++++++++++++++++++++++++---------------
src/notrendAR.h | 15 -
src/trendAR.c | 542 ++++++++++++++++++++++++++++++----------------
src/trendAR.h | 21 +
src/utility.c | 22 +
src/utility.h | 5
vignettes |only
18 files changed, 1177 insertions(+), 650 deletions(-)
Permanent link
Title: Functions for analyzing psychophysical data in R
Diff between psyphy versions 0.1-7 dated 2012-07-29 and 0.1-9 dated 2014-01-22
Description: An assortment of functions that could be useful in analyzing data from psychophysical experiments. It includes functions for calculating d' from several different experimental designs, links for m-alternative forced-choice (mafc) data to be used with the binomial family in glm (and possibly other contexts) and self-Start functions for estimating gamma values for CRT screen calibrations.
Author: Kenneth Knoblauch
Maintainer: Ken Knoblauch
psyphy-0.1-7/psyphy/doc |only
psyphy-0.1-9/psyphy/DESCRIPTION | 19 +++++++------------
psyphy-0.1-9/psyphy/MD5 | 8 ++++----
psyphy-0.1-9/psyphy/inst/NEWS | 3 +++
psyphy-0.1-9/psyphy/inst/TODO |only
psyphy-0.1-9/psyphy/man/SS.RGBcalib.Rd | 4 ++--
6 files changed, 16 insertions(+), 18 deletions(-)
Title: Principal Covariates Regression
Diff between PCovR versions 2.1 dated 2013-12-24 and 2.2 dated 2014-01-22
Description: Analyzing regression data with many and/or highly collinear predictor variables, by simultaneously reducing the predictor variables to a limited number of components and regressing the criterion variables on these components. Several rotation options are provided in this package, as well as model selection options.
Author: Marlies Vervloet [aut, cre],
Henk Kiers [aut],
Eva Ceulemans [ctb]
Maintainer: Marlies Vervloet
DESCRIPTION | 8 ++++----
MD5 | 16 +++++++++-------
R/ErrorRatio.R |only
R/pcovr.R | 2 +-
R/pcovr.default.R | 12 ++----------
data/psychiatrists.rda |binary
man/ErrorRatio.Rd |only
man/PCovR-package.Rd | 4 ++--
man/pcovr.Rd | 6 ++++--
man/psychiatrists.Rd | 16 ++++++++--------
10 files changed, 30 insertions(+), 34 deletions(-)
Title: Extended Inference for Lasso and Elastic-Net Regularized Cox and
Generalized Linear Models
Diff between c060 versions 0.2 dated 2013-04-16 and 0.2-3 dated 2014-01-22
Description: c060 provides additional functions to perform stability selection, model validation and parameter tuning for glmnet models
Author: Martin Sill, Thomas Hielscher, Manuela Zucknick, Natalia Becker.
Maintainer: Martin Sill
c060-0.2-3/c060/DESCRIPTION | 30 +-
c060-0.2-3/c060/MD5 | 47 ++--
c060-0.2-3/c060/NAMESPACE | 19 -
c060-0.2-3/c060/R/EPSGO.R | 24 --
c060-0.2-3/c060/R/balancedFolds.R |only
c060-0.2-3/c060/R/coef_intsearch.R |only
c060-0.2-3/c060/R/peperr_glmnet.R | 18 -
c060-0.2-3/c060/R/plot_coef_glmnet.R |only
c060-0.2-3/c060/R/plot_summary_inter_search.R | 2
c060-0.2-3/c060/R/stabilityselection.R | 106 +++++----
c060-0.2-3/c060/R/summary_inter_search.R | 2
c060-0.2-3/c060/R/tune_glmnet_interval.R | 14 -
c060-0.2-3/c060/man/EPSGO.Rd | 296 +++++++++++++++++---------
c060-0.2-3/c060/man/Plot.coef.glmnet.Rd |only
c060-0.2-3/c060/man/Plot.peperr.curves.Rd | 3
c060-0.2-3/c060/man/aggregation.auc.Rd | 116 +++++++---
c060-0.2-3/c060/man/balancedFolds.Rd |only
c060-0.2-3/c060/man/coef.intsearch.Rd |only
c060-0.2-3/c060/man/plot.stabpath.Rd | 27 +-
c060-0.2-3/c060/man/plot.summary.int.Rd | 66 ++---
c060-0.2-3/c060/man/predictProb.coxnet.Rd | 2
c060-0.2-3/c060/man/predictProb.glmnet.Rd | 2
c060-0.2-3/c060/man/stabpath.Rd |only
c060-0.2-3/c060/man/stabsel.Rd |only
c060-0.2-3/c060/man/summary.intsearch.Rd | 4
c060-0.2-3/c060/man/tune.glmnet.interval.Rd | 160 +++++++-------
c060-0.2/c060/R/get_cofn_inter_search.R |only
c060-0.2/c060/man/c060-internal.Rd |only
c060-0.2/c060/man/get.cofn.int.search.Rd |only
c060-0.2/c060/man/stability.path.Rd |only
c060-0.2/c060/man/stability.selection.Rd |only
31 files changed, 548 insertions(+), 390 deletions(-)
More information about benford.analysis at CRAN
Permanent link
Title: A package for estimating age-specific survival from incomplete
capture-recapture/recovery data
Diff between BaSTA versions 1.9 dated 2013-08-10 and 1.9.1 dated 2014-01-22
Description: This package estimates survival and mortality with covariates from capture-recapture/recovery data in a Bayesian framework when many individuals are of unknown age. It includes tools for data checking, model diagnostics and outputs such as life-tables and plots.
Author: Fernando Colchero, Owen Jones, Maren Rebke
Maintainer: Fernando Colchero
DESCRIPTION | 10 ++++----
MD5 | 8 +++---
R/basta.R | 60 ++++++++++++++++++++++++++++++---------------------
R/basta.default.R | 1
man/BaSTA-package.Rd | 6 ++---
5 files changed, 49 insertions(+), 36 deletions(-)
Title: Fit, Simulate and Diagnose Models for Network Evolution based on
Exponential-Family Random Graph Models
Diff between tergm versions 3.1.2 dated 2013-11-28 and 3.1.4 dated 2014-01-22
Description: An integrated set of extensions to the `ergm` package to analyze and simulate network evolution based on exponential-family random graph models (ERGM). "tergm" is a part of the "statnet" suite of packages for network analysis.
Author: Pavel N. Krivitsky [aut, cre],
Mark S. Handcock [aut, ths],
David R. Hunter [ctb],
Steven M. Goodreau [ctb, ths],
Martina Morris [ctb, ths],
Nicole Bohme Carnegie [ctb],
Carter T. Butts [ctb],
Ayn Leslie-Cook [ctb],
Skye Bender-deMoll [ctb]
Maintainer: Pavel N. Krivitsky
DESCRIPTION | 12 ++---
LICENSE | 2
MD5 | 22 +++++-----
NAMESPACE | 5 --
R/simulate.stergm.R | 52 +++++++++++++++++-------
R/stergm.utils.R | 4 +
inst/NEWS.Rd | 86 ++++++++++++++++++++++++++++------------
man/simulate.stergm.Rd | 11 +++--
src/MHproposals_DynMLE.c | 29 +++++++------
src/MHproposals_DynMLE_block.c | 14 +++---
src/MHproposals_DynMoME.c | 16 ++++---
tests/simulate_networkDynamic.R | 80 +++++++++++++++++++++++++++++++++++--
12 files changed, 240 insertions(+), 93 deletions(-)
Title: Rcpp integration for Armadillo templated linear algebra library
Diff between RcppArmadillo versions 0.4.000 dated 2014-01-06 and 0.4.000.2 dated 2014-01-22
Description: R and Armadillo integration using Rcpp
Armadillo is a templated C++ linear algebra library (by Conrad Sanderson)
that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
A delayed evaluation approach is employed (during compile time) to combine
several operations into one, and to reduce (or eliminate) the need for
temporaries. This is accomplished through recursive templates and template
meta-programming.
This library is useful if C++ has been decided as the language of choice
(due to speed and/or integration capabilities), rather than another language.
The RcppArmadillo package includes the header files from the templated
Armadillo library. Thus users do not need to install Armadillo itself in
order to use RcppArmadillo.
This Armadillo integration provides a nice illustration of the
capabilities of the Rcpp package for seamless R and C++ integration.
Armadillo is licensed under the MPL 2.0, while RcppArmadillo (the Rcpp
bindings/bridge to Armadillo) is licensed under the GNU GPL version 2
or later, as is the rest of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Dirk Eddelbuettel
ChangeLog | 13 ++++++++++
DESCRIPTION | 13 +++++-----
MD5 | 30 ++++++++++++-------------
NAMESPACE | 5 +---
inst/NEWS.Rd | 10 ++++++++
inst/doc/RcppArmadillo-intro.pdf |binary
inst/doc/RcppArmadillo-unitTests.pdf |binary
inst/include/armadillo_bits/Col_meat.hpp | 4 +--
inst/include/armadillo_bits/Cube_meat.hpp | 2 -
inst/include/armadillo_bits/Mat_meat.hpp | 4 +--
inst/include/armadillo_bits/Row_meat.hpp | 4 +--
inst/include/armadillo_bits/SpMat_meat.hpp | 2 -
inst/include/armadillo_bits/arma_rng_cxx98.hpp | 6 ++---
inst/include/armadillo_bits/arma_version.hpp | 2 -
inst/include/armadillo_bits/compiler_setup.hpp | 4 +--
inst/include/armadillo_bits/field_meat.hpp | 2 -
16 files changed, 61 insertions(+), 40 deletions(-)