Sat, 25 Jan 2014

Package RcppClassic updated to version 0.9.5 with previous version 0.9.4 dated 2013-07-27

Title: Deprecated 'classic' Rcpp API
Description: The RcppClassic package provides a deprecated C++ library which facilitates the integration of R and C++. New projects should use the new Rcpp API in the Rcpp package.
Author: Dirk Eddelbuettel and Romain Francois, with contributions by David Reiss, and based on code written during 2005 and 2006 by Dominick Samperi
Maintainer: Dirk Eddelbuettel

Diff between RcppClassic versions 0.9.4 dated 2013-07-27 and 0.9.5 dated 2014-01-25

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New package KFKSDS with initial version 1.1
Package: KFKSDS
Version: 1.1
Date: 2014-01-25
Title: Kalman Filter, Smoother and Disturbance Smoother
Description: Naive implementation of the Kalman filter, smoother and disturbance smoother for state space models. An interface to other implementations of the filter that are available in other packages is also provided.
Author: Javier López-de-Lacalle
Maintainer: Javier López-de-Lacalle
Depends: R (>= 3.0.0), stats
Suggests: dlm, dse, FKF, numDeriv, stsm.class
NeedsCompilation: yes
Encoding: UTF-8
License: GPL-2
Packaged: 2014-01-25 23:26:13 UTC; javlacalle
Repository: CRAN
Date/Publication: 2014-01-26 00:59:11

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New package stsm.class with initial version 1.1
Package: stsm.class
Version: 1.1
Date: 2014-01-25
Title: Class and Methods for Structural Time Series Models
Description: This package defines an S4 class for structural time series models and provides some basic methods to work with it.
Author: Javier López-de-Lacalle
Maintainer: Javier López-de-Lacalle
Depends: R (>= 3.0.0), methods
Suggests: numDeriv
NeedsCompilation: no
Encoding: UTF-8
License: GPL-2
Packaged: 2014-01-25 19:06:19 UTC; javlacalle
Repository: CRAN
Date/Publication: 2014-01-25 20:36:51

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Package RWiener updated to version 1.2-0 with previous version 1.1-0 dated 2013-08-07

Title: Wiener process distribution functions
Description: This package provides Wiener process distribution functions, namely the Wiener first passage time density, CDF, quantile and random functions.
Author: Dominik Wabersich
Maintainer: Dominik Wabersich

Diff between RWiener versions 1.1-0 dated 2013-08-07 and 1.2-0 dated 2014-01-25

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Package rpart updated to version 4.1-5 with previous version 4.1-4 dated 2013-12-10

Title: Recursive Partitioning and Regression Trees
Description: Recursive partitioning for classification, regression and survival trees. An implementation of most of the functionality of the 1984 book by Breiman, Friedman, Olshen and Stone.
Author: Terry Therneau [aut], Beth Atkinson [aut], Brian Ripley [aut, trl, cre] (author of R port)
Maintainer: Brian Ripley

Diff between rpart versions 4.1-4 dated 2013-12-10 and 4.1-5 dated 2014-01-25

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Package openNLP updated to version 0.2-2 with previous version 0.2-1 dated 2013-08-20

Title: Apache OpenNLP Tools Interface
Description: An interface to the Apache OpenNLP tools (version 1.5.3). The Apache OpenNLP library is a machine learning based toolkit for the processing of natural language text written in Java. It supports the most common NLP tasks, such as tokenization, sentence segmentation, part-of-speech tagging, named entity extraction, chunking, parsing, and coreference resolution. See for more information.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik

Diff between openNLP versions 0.2-1 dated 2013-08-20 and 0.2-2 dated 2014-01-25

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Package NLP updated to version 0.1-1 with previous version 0.1-0 dated 2013-08-17

Title: Natural Language Processing Infrastructure
Description: Basic classes and methods for Natural Language Processing.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik

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Package gnmf updated to version 0.7 with previous version 0.6 dated 2014-01-09

Title: Generalized Non-negative Matrix Factorization Based on Renyi Divergence
Description: This package performs generalized non-negative matrix factorization based on Renyi divergence.
Author: Jose M. Maisog, Guoli Wang, Karthik Devarajan
Maintainer: Jose M. Maisog

Diff between gnmf versions 0.6 dated 2014-01-09 and 0.7 dated 2014-01-25

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Package irlba updated to version 1.0.3 with previous version 1.0.2 dated 2012-11-05

Title: Fast partial SVD by implicitly-restarted Lanczos bidiagonalization
Description: A fast and memory-efficient method for computing a few approximate singular values and singular vectors of large matrices.
Author: Jim Baglama and Lothar Reichel
Maintainer: Bryan W. Lewis

Diff between irlba versions 1.0.2 dated 2012-11-05 and 1.0.3 dated 2014-01-25

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Package RJSONLD updated to version 1.0.2 with previous version 1.0.1 dated 2014-01-15

Title: Semantic packaging tools for standard analytics
Description: Package the results of standard statistical functions into JSON-LD. Semantics can be explored at https://standardanalytics.io/stats, and discussed at https://github.com/standard-analytics/terms
Author: Joseph Dureau
Maintainer: Joseph Dureau

Diff between RJSONLD versions 1.0.1 dated 2014-01-15 and 1.0.2 dated 2014-01-25

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Package CTT updated to version 2.0 with previous version 1.0 dated 2008-09-03

Title: Classical Test Theory Functions
Description: Contains common CTT functions
Author: John T. Willse
Maintainer: John T. Willse

Diff between CTT versions 1.0 dated 2008-09-03 and 2.0 dated 2014-01-25

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Package protr updated to version 0.2-1 with previous version 0.2-0 dated 2013-12-19

Title: Protein Sequence Descriptor Calculation and Similarity Computation with R
Description: The protr package focus on offering a unique and comprehensive toolkit for protein sequence descriptor calculation and similarity computation. The descriptors included in the protr package are extensively utilized in Bioinformatics and Chemogenomics research. The qualitative descriptors listed in protr include Amino Acid Composition (Amino Acid Composition/Dipeptide Composition/Tripeptide Composition) descriptor, Autocorrelation (Normalized Moreau-Broto Autocorrelation/Moran Autocorrelation/Geary Autocorrelation) descriptor, CTD (Composition/Transition/Distribution) descriptor, Conjoint Traid descriptor, Quasi-sequence Order (Sequence Order Coupling Number/Quasi-sequence Order Descriptors) descriptor and Pseudo Amino Acid Composition (Pseudo Amino Acid Composition/Amphiphilic Pseudo Amino Acid Composition) descriptor. The quantitative descriptors, for Proteochemometric (PCM) Modeling, includes the Generalized Scales-Based Descriptors derived by Principal Components Analysis, Generalized Scales-Based Descriptors derived by AA-Properties (AAindex), Generalized Scales-Based Descriptors derived by 20+ classes of 2D and 3D Molecular Descriptors (Topological, WHIM, VHSE, etc.), Generalized Scales-Based Descriptors derived by Factor Analysis, Generalized Scales-Based Descriptors derived by Multidimensional Scaling, and Generalized BLOSUM/PAM Matrix-Derived Descriptors. The protr package also integrates the functionality of parallellized similarity computation derived by protein sequence alignment and Gene Ontology (GO) semantic similarity measures between a list of protein sequences / GO terms / Entrez Gene IDs. ProtrWeb, the web service built on protr, is located at: http://cbdd.csu.edu.cn:8080/protrweb/ . The protr package is developed by Computational Biology and Drug Design (CBDD) Group, Central South University.
Author: Nan Xiao , Qingsong Xu , Dongsheng Cao
Maintainer: Nan Xiao

Diff between protr versions 0.2-0 dated 2013-12-19 and 0.2-1 dated 2014-01-25

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Package GISTools updated to version 0.7-2 with previous version 0.7-1 dated 2012-07-03

Title: Some further GIS capabilities for R
Description: Some mapping and spatial data manipulation tools - in particular drawing choropleth maps with nice looking legends, and aggregation of point data to polygons.
Author: Chris Brunsdon and Hongyan Chen
Maintainer: Chris Brunsdon

Diff between GISTools versions 0.7-1 dated 2012-07-03 and 0.7-2 dated 2014-01-25

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Package TIMP updated to version 1.11.0 with previous version 1.10.3 dated 2013-09-30

Title: a problem solving environment for fitting separable nonlinear models in physics and chemistry applications
Description: TIMP is a problem solving environment for fitting separable nonlinear models to measurements arising in physics and chemistry experiments, and has been extensively applied to time-resolved spectroscopy and FLIM-FRET data.
Author: Katharine M. Mullen, Joris J. Snellenburg, Sergey P. Laptenok, David Nicolaides, Ivo H.M. van Stokkum
Maintainer: Joris J. Snellenburg

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Package BEDASSLE updated to version 1.3 with previous version 1.2 dated 2013-10-01

Title: Disentangles the effects of geographic and ecological isolation on genetic differentiation
Description: This package provides functions that allow users to quantify the relative contributions of geographic and ecological distances to empirical patterns of genetic differentiation on a landscape. Specifically, the package contains a function that calls a custom Markov chain Monte Carlo (MCMC) algorithm, which is used to estimate the parameters of the inference model, as well as functions for performing MCMC diagnosis and assessing model adequacy.
Author: Gideon Bradburd
Maintainer: Gideon Bradburd

Diff between BEDASSLE versions 1.2 dated 2013-10-01 and 1.3 dated 2014-01-25

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Package scidb updated to version 1.1-1 with previous version 1.1-0 dated 2013-04-13

Title: An R interface to SciDB
Description: SciDB is an open-source array database (http://scidb.org). The scidb package provides an R interface to SciDB.
Author: Paradigm4, B. W. Lewis
Maintainer: B. W. Lewis

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New package soilphysics with initial version 1.0
Package: soilphysics
Type: Package
Title: Soil Physical Analysis
Version: 1.0
Date: 2013-12-28
LazyLoad: yes
LazyData: yes
Author: Anderson Rodrigo da Silva, Renato Paiva de Lima
Maintainer: Anderson Rodrigo da Silva
Depends: R (>= 2.15), utils, rpanel
Suggests: soilwater, soiltexture
Description: Basic and model-based soil physical analysis.
License: GPL (>= 2)
Packaged: 2014-01-24 23:57:13 UTC; Anderson
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-01-25 07:08:55

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Package rmgarch updated to version 1.2-6 with previous version 1.2-5 dated 2014-01-24

Title: Multivariate GARCH models
Description: Feasible multivariate GARCH models including DCC, GO-GARCH and Copula-GARCH.
Author: Alexios Ghalanos
Maintainer: Alexios Ghalanos

Diff between rmgarch versions 1.2-5 dated 2014-01-24 and 1.2-6 dated 2014-01-25

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