Title: A GUI for Merging Datasets in R
Diff between MergeGUI versions 0.1-1 dated 2011-06-20 and 0.2-1 dated 2014-01-27
Description: A GUI for merging datasets in R using gWidgets.
Author: Xiaoyue Cheng, Dianne Cook, Heike Hofmann
Maintainer: Xiaoyue Cheng
MergeGUI-0.1-1/MergeGUI/R/MergeGUI.R |only
MergeGUI-0.1-1/MergeGUI/inst/doc/attributes-windows.png |only
MergeGUI-0.1-1/MergeGUI/inst/doc/dictionary-windows.png |only
MergeGUI-0.1-1/MergeGUI/inst/doc/export-windows.png |only
MergeGUI-0.1-1/MergeGUI/inst/doc/graphical_summary-windows.png |only
MergeGUI-0.1-1/MergeGUI/inst/doc/match_ID-windows.PNG |only
MergeGUI-0.1-1/MergeGUI/inst/doc/match_ID_saving-windows.PNG |only
MergeGUI-0.1-1/MergeGUI/inst/doc/match_bottom-windows.PNG |only
MergeGUI-0.1-1/MergeGUI/inst/doc/match_switch-windows.png |only
MergeGUI-0.1-1/MergeGUI/inst/doc/match_top-windows.png |only
MergeGUI-0.1-1/MergeGUI/inst/doc/numeric_summary-windows.png |only
MergeGUI-0.1-1/MergeGUI/inst/doc/open-windows.PNG |only
MergeGUI-0.1-1/MergeGUI/inst/doc/preferences-windows.png |only
MergeGUI-0.1-1/MergeGUI/inst/doc/pvalues-windows.png |only
MergeGUI-0.2-1/MergeGUI/DESCRIPTION | 20
MergeGUI-0.2-1/MergeGUI/MD5 |only
MergeGUI-0.2-1/MergeGUI/NAMESPACE | 18
MergeGUI-0.2-1/MergeGUI/NEWS |only
MergeGUI-0.2-1/MergeGUI/R/mergeGUI.R |only
MergeGUI-0.2-1/MergeGUI/R/zzz.R | 6
MergeGUI-0.2-1/MergeGUI/README | 2
MergeGUI-0.2-1/MergeGUI/build |only
MergeGUI-0.2-1/MergeGUI/demo/00Index | 2
MergeGUI-0.2-1/MergeGUI/demo/deleteWidget.R | 34
MergeGUI-0.2-1/MergeGUI/inst/doc/introduction.R |only
MergeGUI-0.2-1/MergeGUI/inst/doc/introduction.Rnw | 468 +++++-----
MergeGUI-0.2-1/MergeGUI/inst/doc/introduction.pdf |binary
MergeGUI-0.2-1/MergeGUI/man/MergeGUI.Rd | 174 ++-
MergeGUI-0.2-1/MergeGUI/man/intersect2.Rd | 103 +-
MergeGUI-0.2-1/MergeGUI/man/scale_kstest.Rd | 112 +-
MergeGUI-0.2-1/MergeGUI/man/scale_missing.Rd | 102 +-
MergeGUI-0.2-1/MergeGUI/man/scale_rpart.Rd | 122 +-
MergeGUI-0.2-1/MergeGUI/man/simplifynames.Rd | 59 -
MergeGUI-0.2-1/MergeGUI/man/var.class.Rd | 67 -
MergeGUI-0.2-1/MergeGUI/vignettes |only
35 files changed, 698 insertions(+), 591 deletions(-)
Title: Markdown rendering for R
Diff between markdown versions 0.6.3 dated 2013-07-29 and 0.6.4 dated 2014-01-27
Description: Markdown is a plain-text formatting syntax that can be
converted to XHTML or other formats. This package provides R bindings
to the Sundown markdown rendering library.
Author: JJ Allaire, Jeffrey Horner, Vicent Marti, and Natacha Porte
Maintainer: Yihui Xie
markdown-0.6.3/markdown/inst/RnwToMd.R |only
markdown-0.6.4/markdown/DESCRIPTION | 10 -
markdown-0.6.4/markdown/MD5 | 51 +++----
markdown-0.6.4/markdown/NEWS | 14 +
markdown-0.6.4/markdown/R/markdown-package.R | 3
markdown-0.6.4/markdown/R/renderMarkdown.R | 39 ++++-
markdown-0.6.4/markdown/README.md |only
markdown-0.6.4/markdown/build |only
markdown-0.6.4/markdown/inst/doc/markdown-examples.R | 3
markdown-0.6.4/markdown/inst/doc/markdown-examples.Rmd | 5
markdown-0.6.4/markdown/inst/doc/markdown-examples.html | 47 +++---
markdown-0.6.4/markdown/inst/doc/markdown-output.R |only
markdown-0.6.4/markdown/inst/doc/markdown-output.Rmd |only
markdown-0.6.4/markdown/inst/doc/markdown-output.html |only
markdown-0.6.4/markdown/inst/resources/markdown.css | 25 ++-
markdown-0.6.4/markdown/inst/resources/mathjax.html | 2
markdown-0.6.4/markdown/inst/resources/r_highlight.html | 12 -
markdown-0.6.4/markdown/man/markdown.Rd | 31 +---
markdown-0.6.4/markdown/man/markdownExtensions.Rd | 76 ++++------
markdown-0.6.4/markdown/man/markdownHTMLOptions.Rd | 113 ++++++----------
markdown-0.6.4/markdown/man/markdownToHTML.Rd | 88 +++++-------
markdown-0.6.4/markdown/man/registeredRenderers.Rd | 18 +-
markdown-0.6.4/markdown/man/renderMarkdown.Rd | 31 +---
markdown-0.6.4/markdown/man/rendererExists.Rd | 7
markdown-0.6.4/markdown/man/rendererOutputType.Rd | 15 --
markdown-0.6.4/markdown/man/rpubsUpload.Rd | 26 +--
markdown-0.6.4/markdown/man/smartypants.Rd | 20 +-
markdown-0.6.4/markdown/tests/tests.Rout.save | 2
markdown-0.6.4/markdown/vignettes/markdown-examples.Rmd | 5
markdown-0.6.4/markdown/vignettes/markdown-output.Rmd |only
30 files changed, 319 insertions(+), 324 deletions(-)
Title: Optimal pricing of assets with fixed expiry date.
Diff between AssetPricing versions 0.1-0 dated 2013-08-13 and 0.1-2 dated 2014-01-27
Description: Calculates the optimal price of assets (such as
airline flight seats, hotel room bookings) whose value
becomes zero after a fixed ``expiry date''. Assumes
potential customers arrive (possibly in groups) according
to a known inhomogeneous Poisson process. Also assumes a
known time-varying elasticity of demand (price sensitivity)
function. Uses elementary techniques based on ordinary
differential equations. Uses the package deSolve to effect
the solution of these differential equations.
Author: Rolf Turner
Maintainer: Rolf Turner
AssetPricing-0.1-0/AssetPricing/R/rwmax.R |only
AssetPricing-0.1-2/AssetPricing/Changelog | 34 ++
AssetPricing-0.1-2/AssetPricing/DESCRIPTION | 18 -
AssetPricing-0.1-2/AssetPricing/MD5 | 71 ++--
AssetPricing-0.1-2/AssetPricing/NAMESPACE | 11
AssetPricing-0.1-2/AssetPricing/R/RCS/First.R,v | 27 +
AssetPricing-0.1-2/AssetPricing/R/RCS/buildS.R,v | 36 +-
AssetPricing-0.1-2/AssetPricing/R/RCS/cev.R,v | 165 ++++++++-
AssetPricing-0.1-2/AssetPricing/R/RCS/declareGlobals.R,v |only
AssetPricing-0.1-2/AssetPricing/R/RCS/getPossPrices.R,v | 49 ++
AssetPricing-0.1-2/AssetPricing/R/RCS/getS.R,v |only
AssetPricing-0.1-2/AssetPricing/R/RCS/newt.R,v | 26 +
AssetPricing-0.1-2/AssetPricing/R/RCS/plot.AssetPricing.R,v |only
AssetPricing-0.1-2/AssetPricing/R/RCS/plot.flap.R,v | 139 ++++++--
AssetPricing-0.1-2/AssetPricing/R/RCS/putAway.R,v | 167 +++++++--
AssetPricing-0.1-2/AssetPricing/R/RCS/scrF.R,v | 111 +++++-
AssetPricing-0.1-2/AssetPricing/R/RCS/scrG.R,v | 33 +
AssetPricing-0.1-2/AssetPricing/R/RCS/turnPts.R,v | 75 +++-
AssetPricing-0.1-2/AssetPricing/R/RCS/vsolve.R,v | 81 +++-
AssetPricing-0.1-2/AssetPricing/R/RCS/xsolve.R,v | 72 +++-
AssetPricing-0.1-2/AssetPricing/R/RCS/xsolve.cont.R,v | 75 +++-
AssetPricing-0.1-2/AssetPricing/R/RCS/xsolve.disc.R,v | 51 ++-
AssetPricing-0.1-2/AssetPricing/R/RCS/xsolve.pwl.R,v | 51 ++-
AssetPricing-0.1-2/AssetPricing/R/cev.R | 186 +++++------
AssetPricing-0.1-2/AssetPricing/R/declareGlobals.R | 3
AssetPricing-0.1-2/AssetPricing/R/getPossPrices.R | 17 -
AssetPricing-0.1-2/AssetPricing/R/getS.R |only
AssetPricing-0.1-2/AssetPricing/R/newt.R | 2
AssetPricing-0.1-2/AssetPricing/R/scrF.R | 42 +-
AssetPricing-0.1-2/AssetPricing/R/turnPts.R | 45 +-
AssetPricing-0.1-2/AssetPricing/R/vsolve.R | 2
AssetPricing-0.1-2/AssetPricing/R/xsolve.R | 14
AssetPricing-0.1-2/AssetPricing/R/xsolve.disc.R | 5
AssetPricing-0.1-2/AssetPricing/R/xsolve.pwl.R | 5
AssetPricing-0.1-2/AssetPricing/man/AssetPricing-internal.Rd | 12
AssetPricing-0.1-2/AssetPricing/man/buildS.Rd | 2
AssetPricing-0.1-2/AssetPricing/man/plot.AssetPricing.Rd | 4
AssetPricing-0.1-2/AssetPricing/man/vsolve.Rd | 2
AssetPricing-0.1-2/AssetPricing/man/xsolve.Rd | 65 ++-
39 files changed, 1246 insertions(+), 452 deletions(-)
Title: Methods for computing spatial, temporal, and spatiotemporal
statistics
Diff between synchrony versions 0.2 dated 2014-01-21 and 0.2.1 dated 2014-01-27
Description: Methods for computing spatial, temporal, and spatiotemporal statistics including: empirical univariate, bivariate and multivariate variograms; fitting variogram models; phase locking and synchrony analysis; generating autocorrelated and cross-correlated matrices.
Author: Tarik C. Gouhier
Maintainer: Tarik C. Gouhier
ChangeLog |only
DESCRIPTION | 12 +++++-----
MD5 | 54 ++++++++++++++++++++++++-----------------------
R/community.sync.R | 22 +++++++++----------
R/find.minmax.R | 4 +++
R/meancorr.R | 14 ++++++------
R/peaks.R | 5 ++++
R/phase.sync.R | 2 -
R/plot.vario.R | 11 +++------
R/print.synchrony.R | 4 +--
R/surrogate.ts.R | 3 ++
inst/CITATION | 2 -
inst/NEWS.Rd |only
man/community.sync.Rd | 10 ++++----
man/coord2dist.Rd | 2 -
man/correlated.matrix.Rd | 10 ++++----
man/find.minmax.Rd | 6 +++--
man/latlon2dist.Rd | 2 -
man/meancorr.Rd | 13 +++++------
man/peaks.Rd | 15 ++++++++-----
man/phase.partnered.Rd | 4 +--
man/phase.sync.Rd | 17 +++++++++-----
man/plot.synchrony.Rd | 6 ++---
man/plot.variofit.Rd | 2 -
man/surrogate.ts.Rd | 6 +++--
man/synchrony-package.Rd | 32 +++++++++++++++------------
man/vario.Rd | 7 ++----
man/vario.fit.Rd | 8 +++---
man/vario.func.Rd | 2 -
29 files changed, 151 insertions(+), 124 deletions(-)
Title: Tools for Harnessing MLBAM Gameday data and Visualizing PITCHf/x
Diff between pitchRx versions 0.7 dated 2013-11-13 and 1.0 dated 2014-01-27
Description: With pitchRx, one can easily obtain Major League Baseball Advanced
Media's Gameday data (as well as store it in a remote database). The
Gameday website hosts a wealth of data in XML format, but perhaps most
interesting is PITCHf/x. Among other things, PITCHf/x data can be used to
recreate a baseball's flight path from a pitcher's hand to home plate. With
pitchRx, one can easily create animations and interactive 3D scatterplots
of the baseball's flight path. PITCHf/x data is also commonly used to
generate a static plot of baseball locations at the moment they cross home
plate. These plots, sometimes called strike-zone plots, can also refer to a
plot of event probabilities over the same region. pitchRx provides an easy
and robust way to generate strike-zone plots using the ggplot2 package.
Author: Carson Sievert
Maintainer: Carson Sievert
pitchRx-0.7/pitchRx/R/scrapeFX.R |only
pitchRx-0.7/pitchRx/R/urls.R |only
pitchRx-0.7/pitchRx/R/urlsToDataFrame.R |only
pitchRx-0.7/pitchRx/data/urls.rda |only
pitchRx-0.7/pitchRx/man/urls.Rd |only
pitchRx-1.0/pitchRx/DESCRIPTION | 37 ++++++----
pitchRx-1.0/pitchRx/LICENSE | 23 ------
pitchRx-1.0/pitchRx/MD5 | 52 +++++++-------
pitchRx-1.0/pitchRx/NAMESPACE | 5 -
pitchRx-1.0/pitchRx/NEWS | 30 ++++++++
pitchRx-1.0/pitchRx/R/animateFX.R | 10 +-
pitchRx-1.0/pitchRx/R/deprecated.R |only
pitchRx-1.0/pitchRx/R/fields.R | 8 +-
pitchRx-1.0/pitchRx/R/getStrikezones.R | 6 -
pitchRx-1.0/pitchRx/R/gids.R |only
pitchRx-1.0/pitchRx/R/scrape.R |only
pitchRx-1.0/pitchRx/R/strikeFX.R | 101 +++++++++++++++--------------
pitchRx-1.0/pitchRx/data/fields.rda |binary
pitchRx-1.0/pitchRx/data/gids.rda |only
pitchRx-1.0/pitchRx/data/pitches.rda |binary
pitchRx-1.0/pitchRx/man/animateFX.Rd | 25 +++----
pitchRx-1.0/pitchRx/man/fields.Rd | 13 +--
pitchRx-1.0/pitchRx/man/getSnapshots.Rd | 12 +--
pitchRx-1.0/pitchRx/man/gids.Rd |only
pitchRx-1.0/pitchRx/man/interactiveFX.Rd | 9 +-
pitchRx-1.0/pitchRx/man/makeUrls.Rd |only
pitchRx-1.0/pitchRx/man/pitchRx.Rd | 6 -
pitchRx-1.0/pitchRx/man/pitches.Rd | 7 --
pitchRx-1.0/pitchRx/man/players.Rd | 17 ++--
pitchRx-1.0/pitchRx/man/scrape.Rd |only
pitchRx-1.0/pitchRx/man/scrapeFX.Rd | 31 ++++----
pitchRx-1.0/pitchRx/man/strikeFX.Rd | 43 +++++++-----
pitchRx-1.0/pitchRx/man/urlsToDataFrame.Rd | 61 ++++++++---------
33 files changed, 265 insertions(+), 231 deletions(-)
Title: L-moments, Censored L-moments, Trimmed L-moments, L-comoments,
and Many Distributions
Diff between lmomco versions 1.7.9 dated 2013-12-03 and 1.8.1 dated 2014-01-27
Description: The package is a comparatively comprehensive implementation of the theory of L-moments. L-moment, probability-weighted moment (PWM), and parameter estimation for numerous familiar and not-so-familiar distributions are provided. L-moment estimate for the same distributions are provided. L-moments are analogous to product moments; however, L-moments have many advantages including unbiasedness, robustness, and consistency. L-moments can outperform maximum likelihood for small to moderate samples. The package originally was originally oriented around circa 1996-FORTRAN algorithms by Hosking, and the nomenclature parallels that of Hosking. The Hosking algorithms later became available in the lmom package. However, vast extensions, components, concepts, more distributions, L-moment curiosities, and research topics are added. Such extensions the Sen weighted mean, Gini mean difference, plotting positions, and conditional probability adjustments. L-moment ratio diagrams are supported. L-moment support for right-tail and left-tail censoring by known or unknown censoring threshold and also by indicator variable. Asymmetric trimmed L-moments are supported as are numerical integration to dynamically compute trajectories of select TL-moment ratios for the construction of TL-moment ratio diagrams. L-moments have multi-variate analogs; the sample L-comoments are implemented and might have considerable application with copulas because L-comoments measure asymmetric association and higher comoments or comovements of variables. Support exists for exact analytical boot-strap estimates of order statistics, L-moments, and variances-covariances of L-moments. The Harri-Coble Tau34-squared Test for Normality using sample L-skew and L-kurtosis is available. Support for the following distributions, with moment type shown as "L" (L-moments) or "TL" (trimmed L-moments) and additional support for right-tail censoring ([RC]) include, is available: Asymmetric Exponential Power (L), Cauchy (TL), Eta-Mu (L), Exponential (L), Gamma (L), Generalized Extreme Value (L), Generalized Lambda (L & TL), Generalized Logistic (L), Generalized Normal (L), Generalized Pareto (L[RC] & TL), Gumbel (L), Kappa (L), Kappa-Mu (L), Kumaraswamy (L), Laplace (L), Normal (L), 3-parameter log-Normal (L), Pearson Type III (L), Rayleigh (L), Reverse Gumbel (L[RC]), Rice/Rician (L), Truncated Exponential (L), Wakeby (L), and Weibull (L).
Author: William Asquith
Maintainer: William Asquith
DESCRIPTION | 10
MD5 | 560 +++++++++++++++++++++---------------------
NAMESPACE | 557 ++++++++++++++++++++---------------------
NEWS | 23 +
R/dat2bernqua.R | 107 ++++++--
R/lmoms.bernstein.R |only
R/pfactor.bernstein.R |only
man/Apwm2BpwmRC.Rd | 6
man/Bpwm2ApwmRC.Rd | 6
man/LaguerreHalf.Rd | 2
man/Lcomoment.Lk12.Rd | 1
man/Lcomoment.Wk.Rd | 1
man/Lcomoment.coefficients.Rd | 1
man/Lcomoment.correlation.Rd | 1
man/Lcomoment.matrix.Rd | 1
man/T2prob.Rd | 2
man/TLmom.Rd | 18 -
man/TLmoms.Rd | 14 -
man/are.lmom.valid.Rd | 12
man/are.par.valid.Rd | 2
man/are.paraep4.valid.Rd | 2
man/are.parcau.valid.Rd | 8
man/are.paremu.valid.Rd | 4
man/are.parexp.valid.Rd | 7
man/are.pargam.valid.Rd | 7
man/are.pargev.valid.Rd | 7
man/are.pargld.valid.Rd | 4
man/are.parglo.valid.Rd | 7
man/are.pargno.valid.Rd | 7
man/are.pargpa.valid.Rd | 7
man/are.pargum.valid.Rd | 7
man/are.parkap.valid.Rd | 7
man/are.parkmu.valid.Rd | 4
man/are.parkur.valid.Rd | 7
man/are.parlap.valid.Rd | 2
man/are.parln3.valid.Rd | 6
man/are.parnor.valid.Rd | 7
man/are.parpe3.valid.Rd | 7
man/are.parray.valid.Rd | 3
man/are.parrevgum.valid.Rd | 6
man/are.parrice.valid.Rd | 3
man/are.partexp.valid.Rd | 2
man/are.parwak.valid.Rd | 6
man/are.parwei.valid.Rd | 5
man/cdf2lmom.Rd | 3
man/cdf2lmoms.Rd | 3
man/cdfaep4.Rd | 1
man/cdfcau.Rd | 3
man/cdfemu.Rd | 7
man/cdfexp.Rd | 1
man/cdfgam.Rd | 3
man/cdfgev.Rd | 1
man/cdfgld.Rd | 1
man/cdfglo.Rd | 1
man/cdfgno.Rd | 1
man/cdfgpa.Rd | 1
man/cdfgum.Rd | 1
man/cdfkap.Rd | 1
man/cdfkmu.Rd | 4
man/cdfkur.Rd | 1
man/cdflap.Rd | 1
man/cdfln3.Rd | 1
man/cdfnor.Rd | 1
man/cdfpe3.Rd | 1
man/cdfray.Rd | 1
man/cdfrevgum.Rd | 1
man/cdfrice.Rd | 1
man/cdftexp.Rd | 1
man/cdfwak.Rd | 1
man/cdfwei.Rd | 9
man/check.fs.Rd | 20 -
man/check.pdf.Rd | 6
man/dat2bernqua.Rd | 130 ++++++++-
man/dist.list.Rd | 2
man/dlmomco.Rd | 5
man/expect.max.ostat.Rd | 2
man/f2flo.Rd | 2
man/f2fpds.Rd | 2
man/fliplmoms.Rd | 5
man/flo2f.Rd | 2
man/fpds2f.Rd | 2
man/freq.curve.all.Rd | 55 ++--
man/gen.freq.curves.Rd | 4
man/genci.Rd | 3
man/gini.mean.diff.Rd | 2
man/harmonic.mean.Rd | 6
man/hlmomco.Rd | 6
man/is.aep4.Rd | 2
man/is.cau.Rd | 4
man/is.emu.Rd | 2
man/is.exp.Rd | 4
man/is.gam.Rd | 4
man/is.gev.Rd | 4
man/is.gld.Rd | 2
man/is.glo.Rd | 4
man/is.gno.Rd | 4
man/is.gpa.Rd | 4
man/is.gum.Rd | 4
man/is.kap.Rd | 4
man/is.kmu.Rd | 2
man/is.kur.Rd | 4
man/is.lap.Rd | 2
man/is.ln3.Rd | 4
man/is.nor.Rd | 4
man/is.pe3.Rd | 4
man/is.ray.Rd | 4
man/is.revgum.Rd | 4
man/is.rice.Rd | 2
man/is.texp.Rd | 2
man/is.wak.Rd | 4
man/is.wei.Rd | 4
man/lcomoms2.Rd | 2
man/lmom.ub.Rd | 10
man/lmom2par.Rd | 2
man/lmom2pwm.Rd | 12
man/lmom2vec.Rd | 2
man/lmomRCmark.Rd | 6
man/lmomTLgld.Rd | 2
man/lmomTLgpa.Rd | 6
man/lmomaep4.Rd | 2
man/lmomcau.Rd | 8
man/lmomcoBook.Rd | 4
man/lmomemu.Rd | 4
man/lmomexp.Rd | 4
man/lmomgam.Rd | 4
man/lmomgev.Rd | 4
man/lmomgld.Rd | 2
man/lmomglo.Rd | 6
man/lmomgno.Rd | 8
man/lmomgpa.Rd | 4
man/lmomgpaRC.Rd | 6
man/lmomgum.Rd | 4
man/lmomkap.Rd | 4
man/lmomkmu.Rd | 6
man/lmomkur.Rd | 7
man/lmomlap.Rd | 2
man/lmomln3.Rd | 8
man/lmomnor.Rd | 4
man/lmompe3.Rd | 6
man/lmomray.Rd | 2
man/lmomrevgum.Rd | 6
man/lmomrice.Rd | 4
man/lmoms.Rd | 5
man/lmoms.bernstein.Rd |only
man/lmoms.bootbarvar.Rd | 6
man/lmomsRCmark.Rd | 4
man/lmomsf01.Rd | 3
man/lmomtexp.Rd | 2
man/lmomwak.Rd | 4
man/lmomwei.Rd | 4
man/lmorph.Rd | 3
man/lmrdia.Rd | 1
man/lmrdiscord.Rd | 3
man/nonexceeds.Rd | 2
man/par2cdf.Rd | 2
man/par2cdf2.Rd | 4
man/par2lmom.Rd | 2
man/par2pdf.Rd | 6
man/par2qua.Rd | 6
man/par2qua2.Rd | 7
man/par2vec.Rd | 6
man/parTLgld.Rd | 2
man/parTLgpa.Rd | 2
man/paraep4.Rd | 2
man/parcau.Rd | 6
man/paremu.Rd | 4
man/parexp.Rd | 2
man/pargam.Rd | 2
man/pargev.Rd | 2
man/pargld.Rd | 2
man/parglo.Rd | 2
man/pargno.Rd | 2
man/pargpa.Rd | 3
man/pargpaRC.Rd | 6
man/pargum.Rd | 2
man/parkap.Rd | 2
man/parkmu.Rd | 6
man/parkur.Rd | 3
man/parlap.Rd | 2
man/parln3.Rd | 2
man/parnor.Rd | 3
man/parpe3.Rd | 2
man/parray.Rd | 2
man/parrevgum.Rd | 8
man/parrice.Rd | 14 -
man/partexp.Rd | 2
man/parwak.Rd | 2
man/parwei.Rd | 2
man/pdfaep4.Rd | 1
man/pdfcau.Rd | 5
man/pdfemu.Rd | 1
man/pdfexp.Rd | 3
man/pdfgam.Rd | 3
man/pdfgev.Rd | 1
man/pdfgld.Rd | 1
man/pdfglo.Rd | 1
man/pdfgno.Rd | 1
man/pdfgpa.Rd | 1
man/pdfgum.Rd | 1
man/pdfkap.Rd | 1
man/pdfkmu.Rd | 1
man/pdfkur.Rd | 1
man/pdflap.Rd | 1
man/pdfln3.Rd | 1
man/pdfnor.Rd | 3
man/pdfpe3.Rd | 1
man/pdfray.Rd | 1
man/pdfrevgum.Rd | 1
man/pdfrice.Rd | 1
man/pdftexp.Rd | 1
man/pdfwak.Rd | 1
man/pdfwei.Rd | 1
man/pfactor.bernstein.Rd |only
man/plmomco.Rd | 4
man/plotlmrdia.Rd | 1
man/pmoms.Rd | 4
man/pp.Rd | 5
man/pp.f.Rd | 3
man/pp.median.Rd | 3
man/prettydist.Rd | 2
man/prob2T.Rd | 2
man/pwm.Rd | 3
man/pwm.beta2alpha.Rd | 2
man/pwm.gev.Rd | 5
man/pwm.pp.Rd | 5
man/pwm.ub.Rd | 3
man/pwm2lmom.Rd | 6
man/pwm2vec.Rd | 2
man/pwmLC.Rd | 4
man/pwmRC.Rd | 4
man/qlmomco.Rd | 6
man/qua.ostat.Rd | 5
man/qua2ci.Rd | 2
man/quaaep4.Rd | 1
man/quaaep4kapmix.Rd | 3
man/quacau.Rd | 3
man/quaemu.Rd | 1
man/quaexp.Rd | 3
man/quagam.Rd | 1
man/quagev.Rd | 3
man/quagld.Rd | 1
man/quaglo.Rd | 1
man/quagno.Rd | 1
man/quagpa.Rd | 1
man/quagum.Rd | 1
man/quakap.Rd | 1
man/quakmu.Rd | 1
man/quakur.Rd | 1
man/qualap.Rd | 1
man/qualn3.Rd | 1
man/quanor.Rd | 3
man/quape3.Rd | 1
man/quaray.Rd | 1
man/quarevgum.Rd | 5
man/quarice.Rd | 1
man/quatexp.Rd | 1
man/quawak.Rd | 1
man/quawei.Rd | 3
man/rlmomco.Rd | 5
man/sen.mean.Rd | 3
man/tau34sq.normtest.Rd | 4
man/theoLmoms.Rd | 4
man/theoLmoms.max.ostat.Rd | 3
man/theoTLmoms.Rd | 3
man/theopwms.Rd | 4
man/tlmrcau.Rd | 2
man/tlmrexp.Rd | 2
man/tlmrgev.Rd | 2
man/tlmrglo.Rd | 2
man/tlmrgno.Rd | 2
man/tlmrgpa.Rd | 2
man/tlmrgum.Rd | 2
man/tlmrln3.Rd | 6
man/tlmrnor.Rd | 2
man/tlmrpe3.Rd | 2
man/tlmrray.Rd | 2
man/vec2TLmom.Rd | 2
man/vec2lmom.Rd | 2
man/vec2par.Rd | 2
man/vec2pwm.Rd | 2
man/x2xlo.Rd | 2
man/z.par2cdf.Rd | 2
man/z.par2qua.Rd | 2
283 files changed, 1270 insertions(+), 1095 deletions(-)
Title: Programming with Big Data -- Scalable Linear Algebra Packages
Diff between pbdSLAP versions 0.1-6 dated 2013-07-05 and 0.1-7 dated 2014-01-27
Description: pbdSLAP utilizes scalable linear algebra packages mainly
including BLACS, PBLAS, and ScaLAPACK in double precision via
pbdMPI based on ScaLAPACK version 2.0.2.
Author: Wei-Chen Chen [aut, cre],
Drew Schmidt [aut],
George Ostrouchov [aut],
Pragneshkumar Patel [aut]
Maintainer: Wei-Chen Chen
pbdSLAP-0.1-6/pbdSLAP/ChangeNote |only
pbdSLAP-0.1-6/pbdSLAP/INSTALL.win.bin |only
pbdSLAP-0.1-6/pbdSLAP/INSTALL.win.src |only
pbdSLAP-0.1-6/pbdSLAP/inst/doc/pbdSLAP-guide.R |only
pbdSLAP-0.1-7/pbdSLAP/ChangeLog | 9 ++
pbdSLAP-0.1-7/pbdSLAP/DESCRIPTION | 23 ++---
pbdSLAP-0.1-7/pbdSLAP/INSTALL | 45 ++++++++++
pbdSLAP-0.1-7/pbdSLAP/MD5 | 35 +++----
pbdSLAP-0.1-7/pbdSLAP/R/get_conf.r | 9 +-
pbdSLAP-0.1-7/pbdSLAP/R/zzz.r | 6 -
pbdSLAP-0.1-7/pbdSLAP/README | 2
pbdSLAP-0.1-7/pbdSLAP/cleanup | 1
pbdSLAP-0.1-7/pbdSLAP/inst/Change_Note.txt |only
pbdSLAP-0.1-7/pbdSLAP/inst/doc/pbdSLAP-guide.Rnw | 17 ++-
pbdSLAP-0.1-7/pbdSLAP/inst/doc/pbdSLAP-guide.pdf |binary
pbdSLAP-0.1-7/pbdSLAP/man/00_pbdSLAP-package.Rd | 1
pbdSLAP-0.1-7/pbdSLAP/src/Makevars.win | 8 +
pbdSLAP-0.1-7/pbdSLAP/src/REDIST/pgemraux.c | 2
pbdSLAP-0.1-7/pbdSLAP/src/SLmake.inc.win | 2
pbdSLAP-0.1-7/pbdSLAP/vignettes/pbdSLAP-guide.Rnw | 17 ++-
pbdSLAP-0.1-7/pbdSLAP/vignettes/pbdSLAP-include/01-acknowledgement.tex | 2
21 files changed, 127 insertions(+), 52 deletions(-)
Title: Programming with Big Data -- Interface to MPI
Diff between pbdMPI versions 0.2-1 dated 2013-09-27 and 0.2-2 dated 2014-01-27
Description: pbdMPI provides an efficient interface to MPI by utilizing S4
classes and methods with a focus on Single Program/Multiple Data (SPMD)
parallel programming style, which is intended for batch parallel
execution.
Author: Wei-Chen Chen [aut, cre],
George Ostrouchov [aut],
Drew Schmidt [aut],
Pragneshkumar Patel [aut],
Hao Yu [aut],
Christian Heckendorf [ctb],
Brian Ripley [ctb]
Maintainer: Wei-Chen Chen
pbdMPI-0.2-1/pbdMPI/R/get_mpi.r |only
pbdMPI-0.2-1/pbdMPI/man/11_d.control.Rd |only
pbdMPI-0.2-1/pbdMPI/man/ww_get.jid.Rd |only
pbdMPI-0.2-1/pbdMPI/man/ww_print_cat.Rd |only
pbdMPI-0.2-1/pbdMPI/man/ww_seed.Rd |only
pbdMPI-0.2-1/pbdMPI/man/xx_comm.sort.Rd |only
pbdMPI-0.2-1/pbdMPI/man/xx_comm.timer.Rd |only
pbdMPI-0.2-1/pbdMPI/man/yy_api.apply.Rd |only
pbdMPI-0.2-1/pbdMPI/man/yy_api.task.pull.Rd |only
pbdMPI-0.2-1/pbdMPI/man/zz_spmd.internal.Rd |only
pbdMPI-0.2-2/pbdMPI/ChangeLog | 39 +
pbdMPI-0.2-2/pbdMPI/DESCRIPTION | 30 -
pbdMPI-0.2-2/pbdMPI/INSTALL | 4
pbdMPI-0.2-2/pbdMPI/MD5 | 258 +++++-----
pbdMPI-0.2-2/pbdMPI/NAMESPACE | 34 -
pbdMPI-0.2-2/pbdMPI/R/api_lapply.r | 22
pbdMPI-0.2-2/pbdMPI/R/api_sapply.r | 15
pbdMPI-0.2-2/pbdMPI/R/api_task_pull.r | 142 +++++
pbdMPI-0.2-2/pbdMPI/R/api_tool.r | 6
pbdMPI-0.2-2/pbdMPI/R/comm_balance.r |only
pbdMPI-0.2-2/pbdMPI/R/comm_base.r |only
pbdMPI-0.2-2/pbdMPI/R/comm_range.r |only
pbdMPI-0.2-2/pbdMPI/R/comm_read.r |only
pbdMPI-0.2-2/pbdMPI/R/comm_seed.r | 72 ++
pbdMPI-0.2-2/pbdMPI/R/comm_sort.r | 2
pbdMPI-0.2-2/pbdMPI/R/comm_tool.r | 33 +
pbdMPI-0.2-2/pbdMPI/R/comm_which.r |only
pbdMPI-0.2-2/pbdMPI/R/comm_write.r |only
pbdMPI-0.2-2/pbdMPI/R/get_winmpi.r |only
pbdMPI-0.2-2/pbdMPI/R/spmd_communicator.r | 93 +--
pbdMPI-0.2-2/pbdMPI/R/spmd_communicator_spawn.r |only
pbdMPI-0.2-2/pbdMPI/R/spmd_tool.r | 2
pbdMPI-0.2-2/pbdMPI/R/windows/zzz.r | 67 +-
pbdMPI-0.2-2/pbdMPI/R/zzz.r.in | 61 +-
pbdMPI-0.2-2/pbdMPI/README | 2
pbdMPI-0.2-2/pbdMPI/cleanup | 1
pbdMPI-0.2-2/pbdMPI/configure | 225 ++------
pbdMPI-0.2-2/pbdMPI/configure.ac | 68 ++
pbdMPI-0.2-2/pbdMPI/data/control.r | 4
pbdMPI-0.2-2/pbdMPI/data/control_io.r |only
pbdMPI-0.2-2/pbdMPI/demo/00Index | 2
pbdMPI-0.2-2/pbdMPI/demo/allgather.r | 2
pbdMPI-0.2-2/pbdMPI/demo/allreduce.r | 2
pbdMPI-0.2-2/pbdMPI/demo/any_all.r | 2
pbdMPI-0.2-2/pbdMPI/demo/bcast.r | 2
pbdMPI-0.2-2/pbdMPI/demo/divide.r | 2
pbdMPI-0.2-2/pbdMPI/demo/gather.r | 2
pbdMPI-0.2-2/pbdMPI/demo/pbdApply.r | 2
pbdMPI-0.2-2/pbdMPI/demo/pbdLapply.r | 2
pbdMPI-0.2-2/pbdMPI/demo/reduce.r | 2
pbdMPI-0.2-2/pbdMPI/demo/scatter.r | 2
pbdMPI-0.2-2/pbdMPI/demo/seed.r | 20
pbdMPI-0.2-2/pbdMPI/demo/simple_balance.r |only
pbdMPI-0.2-2/pbdMPI/demo/simple_io.r |only
pbdMPI-0.2-2/pbdMPI/demo/sort.r | 2
pbdMPI-0.2-2/pbdMPI/demo/task_pull.r | 2
pbdMPI-0.2-2/pbdMPI/inst/doc/pbdMPI-guide.Rnw | 27 -
pbdMPI-0.2-2/pbdMPI/inst/doc/pbdMPI-guide.pdf |binary
pbdMPI-0.2-2/pbdMPI/inst/examples/test_cs/named.client.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_cs/named.server.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_cs/simple.client.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_cs/simple.server.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_long_vector/allgather.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_long_vector/allreduce.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_long_vector/bcast.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_long_vector/gather.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_long_vector/reduce.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_long_vector/scatter.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_long_vector/send_recv.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_parallel/01_mclapply_spmd.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_parallel/02_parMM_spmd.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_parallel/03_boot_spmd.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_parallel/04_glm_spmd.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_performance/demo_allgather_spmd.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_performance/demo_scatter_spmd.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_rmpi/allgather_spmd.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_rmpi/allgatherv_spmd.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_rmpi/allreduce_spmd.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_rmpi/bcast_spmd.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_rmpi/gather_spmd.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_rmpi/reduce_spmd.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_rmpi/scatter_spmd.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_rmpi/scatterv_spmd.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_rmpi/sendrecv_spmd.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_s4/01_simple.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_s4/02_mean.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_spmd/allgather.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_spmd/allreduce.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_spmd/bcast.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_spmd/gather.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_spmd/isend_irecv_wait.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_spmd/reduce.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_spmd/replace.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_spmd/scatter.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_spmd/send_recv.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_spmd/sendrecv.r | 2
pbdMPI-0.2-2/pbdMPI/inst/examples/test_spmd/sendrecv_replace.r | 2
pbdMPI-0.2-2/pbdMPI/man/00_pbdMPI-package.Rd | 21
pbdMPI-0.2-2/pbdMPI/man/11_d_control.Rd |only
pbdMPI-0.2-2/pbdMPI/man/aa_allgather-method.Rd | 8
pbdMPI-0.2-2/pbdMPI/man/aa_allreduce-method.Rd | 4
pbdMPI-0.2-2/pbdMPI/man/aa_bcast-method.Rd | 4
pbdMPI-0.2-2/pbdMPI/man/aa_gather-method.Rd | 10
pbdMPI-0.2-2/pbdMPI/man/aa_reduce-method.Rd | 6
pbdMPI-0.2-2/pbdMPI/man/aa_scatter-method.Rd | 10
pbdMPI-0.2-2/pbdMPI/man/ab_recv-method.Rd | 8
pbdMPI-0.2-2/pbdMPI/man/ab_send-method.Rd | 8
pbdMPI-0.2-2/pbdMPI/man/ac_irecv-method.Rd | 12
pbdMPI-0.2-2/pbdMPI/man/ac_isend-method.Rd | 8
pbdMPI-0.2-2/pbdMPI/man/ad_sendrecv-method.Rd | 8
pbdMPI-0.2-2/pbdMPI/man/ad_sendrecv.replace-method.Rd | 12
pbdMPI-0.2-2/pbdMPI/man/cc_comm.Rd | 74 ++
pbdMPI-0.2-2/pbdMPI/man/dd_info.Rd | 2
pbdMPI-0.2-2/pbdMPI/man/dd_sourcetag.Rd | 2
pbdMPI-0.2-2/pbdMPI/man/dd_wait.Rd | 2
pbdMPI-0.2-2/pbdMPI/man/vv_get_jid.Rd |only
pbdMPI-0.2-2/pbdMPI/man/vv_print_cat.Rd |only
pbdMPI-0.2-2/pbdMPI/man/vv_seed.Rd |only
pbdMPI-0.2-2/pbdMPI/man/ww_comm_balance.Rd |only
pbdMPI-0.2-2/pbdMPI/man/ww_comm_read.Rd |only
pbdMPI-0.2-2/pbdMPI/man/ww_comm_write.Rd |only
pbdMPI-0.2-2/pbdMPI/man/xx_comm_Rprof.Rd |only
pbdMPI-0.2-2/pbdMPI/man/xx_comm_any_all.Rd | 2
pbdMPI-0.2-2/pbdMPI/man/xx_comm_base.Rd |only
pbdMPI-0.2-2/pbdMPI/man/xx_comm_range.Rd |only
pbdMPI-0.2-2/pbdMPI/man/xx_comm_sort.Rd |only
pbdMPI-0.2-2/pbdMPI/man/xx_comm_stop_warning.Rd | 2
pbdMPI-0.2-2/pbdMPI/man/xx_comm_timer.Rd |only
pbdMPI-0.2-2/pbdMPI/man/xx_comm_which.Rd |only
pbdMPI-0.2-2/pbdMPI/man/yy_api_apply.Rd |only
pbdMPI-0.2-2/pbdMPI/man/yy_api_task_pull.Rd |only
pbdMPI-0.2-2/pbdMPI/man/zz_spmd_internal.Rd |only
pbdMPI-0.2-2/pbdMPI/src/Makevars.in | 3
pbdMPI-0.2-2/pbdMPI/src/Makevars.win | 157 +++++-
pbdMPI-0.2-2/pbdMPI/src/install.libs.R | 2
pbdMPI-0.2-2/pbdMPI/src/msmpi.def |only
pbdMPI-0.2-2/pbdMPI/src/pkg_global.h | 5
pbdMPI-0.2-2/pbdMPI/src/spmd.h | 14
pbdMPI-0.2-2/pbdMPI/src/spmd_communicator.c | 62 --
pbdMPI-0.2-2/pbdMPI/src/spmd_communicator_spawn.c |only
pbdMPI-0.2-2/pbdMPI/vignettes/pbdMPI-guide.Rnw | 27 -
pbdMPI-0.2-2/pbdMPI/vignettes/pbdMPI-include/01-acknowledgement.tex | 2
pbdMPI-0.2-2/pbdMPI/vignettes/pbdMPI-include/01-copyright.tex | 2
pbdMPI-0.2-2/pbdMPI/vignettes/pbdMPI-include/01-introduction.tex | 13
pbdMPI-0.2-2/pbdMPI/vignettes/pbdMPI-include/02-performance.tex | 2
pbdMPI-0.2-2/pbdMPI/vignettes/pbdMPI-include/03-faq.tex | 50 +
pbdMPI-0.2-2/pbdMPI/vignettes/pbdMPI-include/04-windows.tex | 47 +
pbdMPI-0.2-2/pbdMPI/vignettes/pbdMPI-include/05-analog.tex | 4
pbdMPI-0.2-2/pbdMPI/vignettes/pbdMPI-include/07-simpleio.tex |only
pbdMPI-0.2-2/pbdMPI/vignettes/pbdMPI-include/pbdMPI.bib | 23
150 files changed, 1201 insertions(+), 746 deletions(-)
Title: An R package for the analysis of epidemiological data
Diff between epiR versions 0.9-54 dated 2014-01-08 and 0.9-56 dated 2014-01-27
Description: An R package for the analysis of epidemiological data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, and computing confidence intervals around incidence risk and incidence rate estimates. Miscellaneous functions for use in meta-analysis, diagnostic test interpretation, and sample size calculations.
Author: Mark Stevenson
Maintainer: Mark Stevenson
DESCRIPTION | 8 -
MD5 | 6 -
R/epi.2by2.r | 244 +++++++++++++++++++++++++++++++++++++++++---------------
man/epi.2by2.Rd | 39 ++++++--
4 files changed, 213 insertions(+), 84 deletions(-)
Title: Entropy reweighting to create balanced samples
Diff between ebal versions 0.1-5 dated 2013-10-16 and 0.1-6 dated 2014-01-27
Description: Package implements entropy balancing, a data preprocessing procedure that allows users to reweight a dataset such that the covariate distributions in the reweighted data satisfy a set of user specified moment conditions. This can be useful to create balanced samples in observational studies with a binary treatment where the control group data can be reweighted to match the covariate moments in the treatment group. Entropy balancing can also be used to reweight a survey sample to known characteristics from a target population.
Author: Jens Hainmueller
Maintainer: Jens Hainmueller
DESCRIPTION | 14 +--
MD5 | 16 +--
NAMESPACE | 2
R/zzz.r | 26 ++---
man/baltest.collect.Rd | 106 +++++++++++------------
man/eb.Rd | 107 +++++++++++------------
man/ebalance.Rd | 222 +++++++++++++++++++++++--------------------------
man/ebalance.trim.Rd | 211 ++++++++++++++++++++++------------------------
man/line.searcher.Rd | 93 ++++++++++----------
9 files changed, 390 insertions(+), 407 deletions(-)
Title: Doubly Robust Generalized Estimating Equations
Diff between drgee versions 1.0 dated 2013-12-19 and 1.0.1 dated 2014-01-27
Description: The package provides functions to estimate parameters quantifying
an association between an exposure and an outcome in a generalized
estimating equations model in the presence of nuisance variables. Three methods are implemented:
outcome nuisance model based estimation where a model for the association
between the nuisance factors and the outcome is assumed, exposure nuisance model
based estimation where a model for the association between the nuisance factors
and the exposure is assumed and doubly robust estimation where both models are
used. In doubly robust estimation, the estimates will be consistent when
at least one of the models are correctly specified, not necessarily both.
Author: Johan Zetterqvist
Maintainer: Johan Zetterqvist
DESCRIPTION | 8 ++++----
MD5 | 5 +++--
NEWS |only
R/drFit.R | 6 +++---
4 files changed, 10 insertions(+), 9 deletions(-)
Title: Sound analysis and synthesis
Diff between seewave versions 1.7.2 dated 2013-08-30 and 1.7.3 dated 2014-01-27
Description: seewave provides functions for analysing, manipulating, displaying, editing and synthesizing time waves (particularly sound). This package processes time analysis (oscillograms and envelopes), spectral content, resonance quality factor, entropy, cross correlation and autocorrelation, zero-crossing, dominant frequency, analytic signal, frequency coherence, 2D and 3D spectrograms and many other analyses.
Author: Jerome Sueur
Maintainer: Jerome Sueur
DESCRIPTION | 8
MD5 | 37 ++--
NEWS | 14 +
R/seewave.r | 344 ++++++++++++++++++++++++++++++++++++++----
build |only
inst/doc/seewave_IO.pdf |binary
inst/doc/seewave_analysis.pdf |binary
man/H.Rd | 4
man/NDSI.Rd |only
man/SAX.Rd |only
man/TKEO.Rd |only
man/acoustat.Rd |only
man/diffspec.Rd | 2
man/echo.Rd | 11 -
man/rmoffset.Rd | 23 +-
man/seewave.package.Rd | 9 -
man/soundscapespec.Rd |only
man/spectro.Rd | 8
man/symba.Rd | 2
man/synth.Rd | 20 +-
man/synth2.Rd | 26 +--
man/zc.Rd | 13 -
man/zcr.Rd |only
23 files changed, 421 insertions(+), 100 deletions(-)
Title: meta-analysis of genome-wide SNP association results
Diff between MetABEL versions 0.0-3 dated 2011-02-10 and 0.1-0 dated 2014-01-27
Description: A package for meta-analysis of genome-wide association
scans between quantitative or binary traits and SNPs
Author: Maksim Struchalin, Yurii Aulchenko
Maintainer: L.C. Karssen
DESCRIPTION | 18 -
MD5 |only
R/forestplot.R | 136 +++++----
R/metagwa.files.R | 215 ++++++++------
R/metagwa.tables.R | 754 ++++++++++++++++++++++++++++----------------------
man/forestplot.Rd | 26 -
man/metagwa.files.Rd | 64 ++--
man/metagwa.tables.Rd | 21 -
8 files changed, 719 insertions(+), 515 deletions(-)
Title: Structural Time Series Models
Diff between stsm versions 1.1 dated 2014-01-26 and 1.2 dated 2014-01-27
Description: This package provides algorithms to fit
structural time series models by maximum likelihood.
Author: Javier López-de-Lacalle
Maintainer: Javier López-de-Lacalle
DESCRIPTION | 6 +++---
MD5 | 6 +++---
src/KFKSDS-steady-v2.cpp | 8 ++++----
src/KFKSDS-steady.cpp | 20 ++++++++++----------
4 files changed, 20 insertions(+), 20 deletions(-)
Title: Efficiently Read Sequence Data (VCF format, BCF format and METAL
format) into R
Diff between seqminer versions 2.0 dated 2013-11-20 and 2.2 dated 2014-01-27
Description: Integrate sequencing data (VCF) or meta-analysis results in R
Author: Xiaowei Zhan
Maintainer: Xiaowei Zhan
seqminer-2.0/seqminer/man/tabix.Rd |only
seqminer-2.0/seqminer/src/config.h |only
seqminer-2.2/seqminer/ChangeLog | 15
seqminer-2.2/seqminer/DESCRIPTION | 7
seqminer-2.2/seqminer/MD5 | 69 +-
seqminer-2.2/seqminer/NAMESPACE | 9
seqminer-2.2/seqminer/R/seqminer.R | 98 +++
seqminer-2.2/seqminer/inst/tests/testthat.R | 4
seqminer-2.2/seqminer/man/SeqMiner.Rd | 16
seqminer-2.2/seqminer/man/hasIndex.Rd | 8
seqminer-2.2/seqminer/man/readVCFToListByGene.Rd | 15
seqminer-2.2/seqminer/man/readVCFToListByRange.Rd | 14
seqminer-2.2/seqminer/man/readVCFToMatrixByGene.Rd | 10
seqminer-2.2/seqminer/man/readVCFToMatrixByRange.Rd | 9
seqminer-2.2/seqminer/man/rvmeta.readCovByRange.Rd | 9
seqminer-2.2/seqminer/man/rvmeta.readDataByGene.Rd | 18
seqminer-2.2/seqminer/man/rvmeta.readDataByRange.Rd | 17
seqminer-2.2/seqminer/man/rvmeta.readNullModel.Rd | 11
seqminer-2.2/seqminer/man/rvmeta.readScoreByRange.Rd | 11
seqminer-2.2/seqminer/man/rvmeta.readSkewByRange.Rd | 9
seqminer-2.2/seqminer/man/rvmeta.writeCovData.Rd |only
seqminer-2.2/seqminer/man/rvmeta.writeScoreData.Rd |only
seqminer-2.2/seqminer/man/tabix.createIndex.Rd |only
seqminer-2.2/seqminer/man/tabix.createIndex.meta.Rd |only
seqminer-2.2/seqminer/man/tabix.createIndex.vcf.Rd |only
seqminer-2.2/seqminer/man/tabix.read.Rd |only
seqminer-2.2/seqminer/man/tabix.read.header.Rd | 10
seqminer-2.2/seqminer/man/tabix.read.table.Rd | 12
seqminer-2.2/seqminer/src/FileFormat.h |only
seqminer-2.2/seqminer/src/IO.h | 3
seqminer-2.2/seqminer/src/R_CPP_interface.cpp | 18
seqminer-2.2/seqminer/src/R_CPP_interface.h | 2
seqminer-2.2/seqminer/src/TypeConversion.h | 11
seqminer-2.2/seqminer/src/ksort.h | 2
seqminer-2.2/seqminer/src/rvMetaLoader.cpp | 483 +++++++++++--------
seqminer-2.2/seqminer/src/rvMetaLoader.h | 2
seqminer-2.2/seqminer/src/seqminer.c | 30 +
seqminer-2.2/seqminer/src/tabixLoader.cpp | 20
seqminer-2.2/seqminer/src/tabixLoader.h | 7
seqminer-2.2/seqminer/src/vcf2genoLoader.cpp | 2
40 files changed, 632 insertions(+), 319 deletions(-)
Title: R interface to the QuantLib library
Diff between RQuantLib versions 0.3.10 dated 2013-02-18 and 0.3.11 dated 2014-01-27
Description: The RQuantLib package makes parts of QuantLib visible to the R
user. Currently a number option pricing functions are included, both vanilla
and exotic, as well as a broad range of fixed-income functions. Also included
are general calendaring and holiday utilities. Further software contributions
are welcome.
The QuantLib project aims to provide a comprehensive software framework for
quantitative finance. The goal is to provide a standard open source library
for quantitative analysis, modeling, trading, and risk management of
financial assets.
The Windows binary version is self-contained and does not require a QuantLib
(or Boost) installation.
RQuantLib uses the Rcpp R/C++ interface class library. See the Rcpp package
on CRAN (or R-Forge) for more information on Rcpp.
Note that while RQuantLib's code is licensed under the GPL (v2 or later),
QuantLib itself is released under a somewhat less restrictive Open Source
license (see QuantLib-License.txt).
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel
RQuantLib-0.3.10/RQuantLib/src/rquantlib.h |only
RQuantLib-0.3.11/RQuantLib/ChangeLog | 40 +++++++++
RQuantLib-0.3.11/RQuantLib/DESCRIPTION | 47 +++++------
RQuantLib-0.3.11/RQuantLib/MD5 | 70 ++++++++---------
RQuantLib-0.3.11/RQuantLib/NAMESPACE | 3
RQuantLib-0.3.11/RQuantLib/R/asian.R | 2
RQuantLib-0.3.11/RQuantLib/R/bond.R | 2
RQuantLib-0.3.11/RQuantLib/R/calendars.R | 2
RQuantLib-0.3.11/RQuantLib/R/hullWhiteCalibration.R | 2
RQuantLib-0.3.11/RQuantLib/R/inline.R |only
RQuantLib-0.3.11/RQuantLib/R/mod.R |only
RQuantLib-0.3.11/RQuantLib/README.md |only
RQuantLib-0.3.11/RQuantLib/configure.in | 2
RQuantLib-0.3.11/RQuantLib/inst/include |only
RQuantLib-0.3.11/RQuantLib/man/AsianOption.Rd | 5 -
RQuantLib-0.3.11/RQuantLib/man/BinaryOption.Rd | 3
RQuantLib-0.3.11/RQuantLib/man/Bond.Rd | 2
RQuantLib-0.3.11/RQuantLib/man/BondUtilities.Rd | 15 ++-
RQuantLib-0.3.11/RQuantLib/man/Calendars.Rd | 5 -
RQuantLib-0.3.11/RQuantLib/man/EuropeanOptionArrays.Rd | 6 -
RQuantLib-0.3.11/RQuantLib/man/FixedRateBond.Rd | 9 +-
RQuantLib-0.3.11/RQuantLib/man/ImpliedVolatility.Rd | 3
RQuantLib-0.3.11/RQuantLib/man/ZeroCouponBond.Rd | 2
RQuantLib-0.3.11/RQuantLib/src/Makevars.in | 2
RQuantLib-0.3.11/RQuantLib/src/Makevars.win | 4
RQuantLib-0.3.11/RQuantLib/src/asian.cpp | 2
RQuantLib-0.3.11/RQuantLib/src/barrier_binary.cpp | 2
RQuantLib-0.3.11/RQuantLib/src/bermudan.cpp | 2
RQuantLib-0.3.11/RQuantLib/src/bonds.cpp | 2
RQuantLib-0.3.11/RQuantLib/src/calendars.cpp | 2
RQuantLib-0.3.11/RQuantLib/src/curves.cpp | 2
RQuantLib-0.3.11/RQuantLib/src/daycounter.cpp | 2
RQuantLib-0.3.11/RQuantLib/src/discount.cpp | 2
RQuantLib-0.3.11/RQuantLib/src/hullwhite.cpp | 2
RQuantLib-0.3.11/RQuantLib/src/implieds.cpp | 2
RQuantLib-0.3.11/RQuantLib/src/modules.cpp |only
RQuantLib-0.3.11/RQuantLib/src/utils.cpp | 6 -
RQuantLib-0.3.11/RQuantLib/src/vanilla.cpp | 2
RQuantLib-0.3.11/RQuantLib/src/zero.cpp | 2
39 files changed, 157 insertions(+), 99 deletions(-)
Title: Kalman Filter, Smoother and Disturbance Smoother
Diff between KFKSDS versions 1.2 dated 2014-01-26 and 1.3 dated 2014-01-27
Description: Naive implementation of the Kalman filter, smoother and disturbance
smoother for state space models. An interface to other implementations of the
filter that are available in other packages is also provided.
Author: Javier López-de-Lacalle
Maintainer: Javier López-de-Lacalle
DESCRIPTION | 6 +++---
MD5 | 10 +++++-----
src/KF-deriv.cpp | 15 +++++++++------
src/KF.c | 6 +++---
src/KFKSDS-deriv-steady.cpp | 14 ++++++++------
src/KSDS-deriv.cpp | 10 ++++++----
6 files changed, 34 insertions(+), 27 deletions(-)
Title: Functions for medical statistics book with some demographic data
Diff between fmsb versions 0.4.2 dated 2014-01-05 and 0.4.3 dated 2014-01-27
Description: Several utility functions for the book entitled
"Practices of Medical and Health Data Analysis using R"
(Pearson Education Japan, 2007) with Japanese demographic
data and some demographic analysis related functions.
Author: Minato Nakazawa
Maintainer: Minato Nakazawa
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
NEWS | 4 ++++
R/fmsb.R | 37 ++++++++++++++++++++++---------------
man/pvalueplot.Rd | 17 +++++++++--------
5 files changed, 43 insertions(+), 31 deletions(-)