Title: A GUI for Merging Datasets in R
Description: A GUI for merging datasets in R using gWidgets.
Author: Xiaoyue Cheng, Dianne Cook, Heike Hofmann
Maintainer: Xiaoyue Cheng
Diff between MergeGUI versions 0.1-1 dated 2011-06-20 and 0.2-1 dated 2014-01-27
MergeGUI-0.1-1/MergeGUI/R/MergeGUI.R |only MergeGUI-0.1-1/MergeGUI/inst/doc/attributes-windows.png |only MergeGUI-0.1-1/MergeGUI/inst/doc/dictionary-windows.png |only MergeGUI-0.1-1/MergeGUI/inst/doc/export-windows.png |only MergeGUI-0.1-1/MergeGUI/inst/doc/graphical_summary-windows.png |only MergeGUI-0.1-1/MergeGUI/inst/doc/match_ID-windows.PNG |only MergeGUI-0.1-1/MergeGUI/inst/doc/match_ID_saving-windows.PNG |only MergeGUI-0.1-1/MergeGUI/inst/doc/match_bottom-windows.PNG |only MergeGUI-0.1-1/MergeGUI/inst/doc/match_switch-windows.png |only MergeGUI-0.1-1/MergeGUI/inst/doc/match_top-windows.png |only MergeGUI-0.1-1/MergeGUI/inst/doc/numeric_summary-windows.png |only MergeGUI-0.1-1/MergeGUI/inst/doc/open-windows.PNG |only MergeGUI-0.1-1/MergeGUI/inst/doc/preferences-windows.png |only MergeGUI-0.1-1/MergeGUI/inst/doc/pvalues-windows.png |only MergeGUI-0.2-1/MergeGUI/DESCRIPTION | 20 MergeGUI-0.2-1/MergeGUI/MD5 |only MergeGUI-0.2-1/MergeGUI/NAMESPACE | 18 MergeGUI-0.2-1/MergeGUI/NEWS |only MergeGUI-0.2-1/MergeGUI/R/mergeGUI.R |only MergeGUI-0.2-1/MergeGUI/R/zzz.R | 6 MergeGUI-0.2-1/MergeGUI/README | 2 MergeGUI-0.2-1/MergeGUI/build |only MergeGUI-0.2-1/MergeGUI/demo/00Index | 2 MergeGUI-0.2-1/MergeGUI/demo/deleteWidget.R | 34 MergeGUI-0.2-1/MergeGUI/inst/doc/introduction.R |only MergeGUI-0.2-1/MergeGUI/inst/doc/introduction.Rnw | 468 +++++----- MergeGUI-0.2-1/MergeGUI/inst/doc/introduction.pdf |binary MergeGUI-0.2-1/MergeGUI/man/MergeGUI.Rd | 174 ++- MergeGUI-0.2-1/MergeGUI/man/intersect2.Rd | 103 +- MergeGUI-0.2-1/MergeGUI/man/scale_kstest.Rd | 112 +- MergeGUI-0.2-1/MergeGUI/man/scale_missing.Rd | 102 +- MergeGUI-0.2-1/MergeGUI/man/scale_rpart.Rd | 122 +- MergeGUI-0.2-1/MergeGUI/man/simplifynames.Rd | 59 - MergeGUI-0.2-1/MergeGUI/man/var.class.Rd | 67 - MergeGUI-0.2-1/MergeGUI/vignettes |only 35 files changed, 698 insertions(+), 591 deletions(-)
Title: Markdown rendering for R
Description: Markdown is a plain-text formatting syntax that can be
converted to XHTML or other formats. This package provides R bindings
to the Sundown markdown rendering library.
Author: JJ Allaire, Jeffrey Horner, Vicent Marti, and Natacha Porte
Maintainer: Yihui Xie
Diff between markdown versions 0.6.3 dated 2013-07-29 and 0.6.4 dated 2014-01-27
markdown-0.6.3/markdown/inst/RnwToMd.R |only markdown-0.6.4/markdown/DESCRIPTION | 10 - markdown-0.6.4/markdown/MD5 | 51 +++---- markdown-0.6.4/markdown/NEWS | 14 + markdown-0.6.4/markdown/R/markdown-package.R | 3 markdown-0.6.4/markdown/R/renderMarkdown.R | 39 ++++- markdown-0.6.4/markdown/README.md |only markdown-0.6.4/markdown/build |only markdown-0.6.4/markdown/inst/doc/markdown-examples.R | 3 markdown-0.6.4/markdown/inst/doc/markdown-examples.Rmd | 5 markdown-0.6.4/markdown/inst/doc/markdown-examples.html | 47 +++--- markdown-0.6.4/markdown/inst/doc/markdown-output.R |only markdown-0.6.4/markdown/inst/doc/markdown-output.Rmd |only markdown-0.6.4/markdown/inst/doc/markdown-output.html |only markdown-0.6.4/markdown/inst/resources/markdown.css | 25 ++- markdown-0.6.4/markdown/inst/resources/mathjax.html | 2 markdown-0.6.4/markdown/inst/resources/r_highlight.html | 12 - markdown-0.6.4/markdown/man/markdown.Rd | 31 +--- markdown-0.6.4/markdown/man/markdownExtensions.Rd | 76 ++++------ markdown-0.6.4/markdown/man/markdownHTMLOptions.Rd | 113 ++++++---------- markdown-0.6.4/markdown/man/markdownToHTML.Rd | 88 +++++------- markdown-0.6.4/markdown/man/registeredRenderers.Rd | 18 +- markdown-0.6.4/markdown/man/renderMarkdown.Rd | 31 +--- markdown-0.6.4/markdown/man/rendererExists.Rd | 7 markdown-0.6.4/markdown/man/rendererOutputType.Rd | 15 -- markdown-0.6.4/markdown/man/rpubsUpload.Rd | 26 +-- markdown-0.6.4/markdown/man/smartypants.Rd | 20 +- markdown-0.6.4/markdown/tests/tests.Rout.save | 2 markdown-0.6.4/markdown/vignettes/markdown-examples.Rmd | 5 markdown-0.6.4/markdown/vignettes/markdown-output.Rmd |only 30 files changed, 319 insertions(+), 324 deletions(-)
Title: Optimal pricing of assets with fixed expiry date.
Description: Calculates the optimal price of assets (such as
airline flight seats, hotel room bookings) whose value
becomes zero after a fixed ``expiry date''. Assumes
potential customers arrive (possibly in groups) according
to a known inhomogeneous Poisson process. Also assumes a
known time-varying elasticity of demand (price sensitivity)
function. Uses elementary techniques based on ordinary
differential equations. Uses the package deSolve to effect
the solution of these differential equations.
Author: Rolf Turner
Maintainer: Rolf Turner
Diff between AssetPricing versions 0.1-0 dated 2013-08-13 and 0.1-2 dated 2014-01-27
AssetPricing-0.1-0/AssetPricing/R/rwmax.R |only AssetPricing-0.1-2/AssetPricing/Changelog | 34 ++ AssetPricing-0.1-2/AssetPricing/DESCRIPTION | 18 - AssetPricing-0.1-2/AssetPricing/MD5 | 71 ++-- AssetPricing-0.1-2/AssetPricing/NAMESPACE | 11 AssetPricing-0.1-2/AssetPricing/R/RCS/First.R,v | 27 + AssetPricing-0.1-2/AssetPricing/R/RCS/buildS.R,v | 36 +- AssetPricing-0.1-2/AssetPricing/R/RCS/cev.R,v | 165 ++++++++- AssetPricing-0.1-2/AssetPricing/R/RCS/declareGlobals.R,v |only AssetPricing-0.1-2/AssetPricing/R/RCS/getPossPrices.R,v | 49 ++ AssetPricing-0.1-2/AssetPricing/R/RCS/getS.R,v |only AssetPricing-0.1-2/AssetPricing/R/RCS/newt.R,v | 26 + AssetPricing-0.1-2/AssetPricing/R/RCS/plot.AssetPricing.R,v |only AssetPricing-0.1-2/AssetPricing/R/RCS/plot.flap.R,v | 139 ++++++-- AssetPricing-0.1-2/AssetPricing/R/RCS/putAway.R,v | 167 +++++++-- AssetPricing-0.1-2/AssetPricing/R/RCS/scrF.R,v | 111 +++++- AssetPricing-0.1-2/AssetPricing/R/RCS/scrG.R,v | 33 + AssetPricing-0.1-2/AssetPricing/R/RCS/turnPts.R,v | 75 +++- AssetPricing-0.1-2/AssetPricing/R/RCS/vsolve.R,v | 81 +++- AssetPricing-0.1-2/AssetPricing/R/RCS/xsolve.R,v | 72 +++- AssetPricing-0.1-2/AssetPricing/R/RCS/xsolve.cont.R,v | 75 +++- AssetPricing-0.1-2/AssetPricing/R/RCS/xsolve.disc.R,v | 51 ++- AssetPricing-0.1-2/AssetPricing/R/RCS/xsolve.pwl.R,v | 51 ++- AssetPricing-0.1-2/AssetPricing/R/cev.R | 186 +++++------ AssetPricing-0.1-2/AssetPricing/R/declareGlobals.R | 3 AssetPricing-0.1-2/AssetPricing/R/getPossPrices.R | 17 - AssetPricing-0.1-2/AssetPricing/R/getS.R |only AssetPricing-0.1-2/AssetPricing/R/newt.R | 2 AssetPricing-0.1-2/AssetPricing/R/scrF.R | 42 +- AssetPricing-0.1-2/AssetPricing/R/turnPts.R | 45 +- AssetPricing-0.1-2/AssetPricing/R/vsolve.R | 2 AssetPricing-0.1-2/AssetPricing/R/xsolve.R | 14 AssetPricing-0.1-2/AssetPricing/R/xsolve.disc.R | 5 AssetPricing-0.1-2/AssetPricing/R/xsolve.pwl.R | 5 AssetPricing-0.1-2/AssetPricing/man/AssetPricing-internal.Rd | 12 AssetPricing-0.1-2/AssetPricing/man/buildS.Rd | 2 AssetPricing-0.1-2/AssetPricing/man/plot.AssetPricing.Rd | 4 AssetPricing-0.1-2/AssetPricing/man/vsolve.Rd | 2 AssetPricing-0.1-2/AssetPricing/man/xsolve.Rd | 65 ++- 39 files changed, 1246 insertions(+), 452 deletions(-)
Title: Methods for computing spatial, temporal, and spatiotemporal
statistics
Description: Methods for computing spatial, temporal, and spatiotemporal statistics including: empirical univariate, bivariate and multivariate variograms; fitting variogram models; phase locking and synchrony analysis; generating autocorrelated and cross-correlated matrices.
Author: Tarik C. Gouhier
Maintainer: Tarik C. Gouhier
Diff between synchrony versions 0.2 dated 2014-01-21 and 0.2.1 dated 2014-01-27
ChangeLog |only DESCRIPTION | 12 +++++----- MD5 | 54 ++++++++++++++++++++++++----------------------- R/community.sync.R | 22 +++++++++---------- R/find.minmax.R | 4 +++ R/meancorr.R | 14 ++++++------ R/peaks.R | 5 ++++ R/phase.sync.R | 2 - R/plot.vario.R | 11 +++------ R/print.synchrony.R | 4 +-- R/surrogate.ts.R | 3 ++ inst/CITATION | 2 - inst/NEWS.Rd |only man/community.sync.Rd | 10 ++++---- man/coord2dist.Rd | 2 - man/correlated.matrix.Rd | 10 ++++---- man/find.minmax.Rd | 6 +++-- man/latlon2dist.Rd | 2 - man/meancorr.Rd | 13 +++++------ man/peaks.Rd | 15 ++++++++----- man/phase.partnered.Rd | 4 +-- man/phase.sync.Rd | 17 +++++++++----- man/plot.synchrony.Rd | 6 ++--- man/plot.variofit.Rd | 2 - man/surrogate.ts.Rd | 6 +++-- man/synchrony-package.Rd | 32 +++++++++++++++------------ man/vario.Rd | 7 ++---- man/vario.fit.Rd | 8 +++--- man/vario.func.Rd | 2 - 29 files changed, 151 insertions(+), 124 deletions(-)
Title: Tools for Harnessing MLBAM Gameday data and Visualizing PITCHf/x
Description: With pitchRx, one can easily obtain Major League Baseball Advanced
Media's Gameday data (as well as store it in a remote database). The
Gameday website hosts a wealth of data in XML format, but perhaps most
interesting is PITCHf/x. Among other things, PITCHf/x data can be used to
recreate a baseball's flight path from a pitcher's hand to home plate. With
pitchRx, one can easily create animations and interactive 3D scatterplots
of the baseball's flight path. PITCHf/x data is also commonly used to
generate a static plot of baseball locations at the moment they cross home
plate. These plots, sometimes called strike-zone plots, can also refer to a
plot of event probabilities over the same region. pitchRx provides an easy
and robust way to generate strike-zone plots using the ggplot2 package.
Author: Carson Sievert
Maintainer: Carson Sievert
Diff between pitchRx versions 0.7 dated 2013-11-13 and 1.0 dated 2014-01-27
pitchRx-0.7/pitchRx/R/scrapeFX.R |only pitchRx-0.7/pitchRx/R/urls.R |only pitchRx-0.7/pitchRx/R/urlsToDataFrame.R |only pitchRx-0.7/pitchRx/data/urls.rda |only pitchRx-0.7/pitchRx/man/urls.Rd |only pitchRx-1.0/pitchRx/DESCRIPTION | 37 ++++++---- pitchRx-1.0/pitchRx/LICENSE | 23 ------ pitchRx-1.0/pitchRx/MD5 | 52 +++++++------- pitchRx-1.0/pitchRx/NAMESPACE | 5 - pitchRx-1.0/pitchRx/NEWS | 30 ++++++++ pitchRx-1.0/pitchRx/R/animateFX.R | 10 +- pitchRx-1.0/pitchRx/R/deprecated.R |only pitchRx-1.0/pitchRx/R/fields.R | 8 +- pitchRx-1.0/pitchRx/R/getStrikezones.R | 6 - pitchRx-1.0/pitchRx/R/gids.R |only pitchRx-1.0/pitchRx/R/scrape.R |only pitchRx-1.0/pitchRx/R/strikeFX.R | 101 +++++++++++++++-------------- pitchRx-1.0/pitchRx/data/fields.rda |binary pitchRx-1.0/pitchRx/data/gids.rda |only pitchRx-1.0/pitchRx/data/pitches.rda |binary pitchRx-1.0/pitchRx/man/animateFX.Rd | 25 +++---- pitchRx-1.0/pitchRx/man/fields.Rd | 13 +-- pitchRx-1.0/pitchRx/man/getSnapshots.Rd | 12 +-- pitchRx-1.0/pitchRx/man/gids.Rd |only pitchRx-1.0/pitchRx/man/interactiveFX.Rd | 9 +- pitchRx-1.0/pitchRx/man/makeUrls.Rd |only pitchRx-1.0/pitchRx/man/pitchRx.Rd | 6 - pitchRx-1.0/pitchRx/man/pitches.Rd | 7 -- pitchRx-1.0/pitchRx/man/players.Rd | 17 ++-- pitchRx-1.0/pitchRx/man/scrape.Rd |only pitchRx-1.0/pitchRx/man/scrapeFX.Rd | 31 ++++---- pitchRx-1.0/pitchRx/man/strikeFX.Rd | 43 +++++++----- pitchRx-1.0/pitchRx/man/urlsToDataFrame.Rd | 61 ++++++++--------- 33 files changed, 265 insertions(+), 231 deletions(-)
Title: L-moments, Censored L-moments, Trimmed L-moments, L-comoments,
and Many Distributions
Description: The package is a comparatively comprehensive implementation of the theory of L-moments. L-moment, probability-weighted moment (PWM), and parameter estimation for numerous familiar and not-so-familiar distributions are provided. L-moment estimate for the same distributions are provided. L-moments are analogous to product moments; however, L-moments have many advantages including unbiasedness, robustness, and consistency. L-moments can outperform maximum likelihood for small to moderate samples. The package originally was originally oriented around circa 1996-FORTRAN algorithms by Hosking, and the nomenclature parallels that of Hosking. The Hosking algorithms later became available in the lmom package. However, vast extensions, components, concepts, more distributions, L-moment curiosities, and research topics are added. Such extensions the Sen weighted mean, Gini mean difference, plotting positions, and conditional probability adjustments. L-moment ratio diagrams are supported. L-moment support for right-tail and left-tail censoring by known or unknown censoring threshold and also by indicator variable. Asymmetric trimmed L-moments are supported as are numerical integration to dynamically compute trajectories of select TL-moment ratios for the construction of TL-moment ratio diagrams. L-moments have multi-variate analogs; the sample L-comoments are implemented and might have considerable application with copulas because L-comoments measure asymmetric association and higher comoments or comovements of variables. Support exists for exact analytical boot-strap estimates of order statistics, L-moments, and variances-covariances of L-moments. The Harri-Coble Tau34-squared Test for Normality using sample L-skew and L-kurtosis is available. Support for the following distributions, with moment type shown as "L" (L-moments) or "TL" (trimmed L-moments) and additional support for right-tail censoring ([RC]) include, is available: Asymmetric Exponential Power (L), Cauchy (TL), Eta-Mu (L), Exponential (L), Gamma (L), Generalized Extreme Value (L), Generalized Lambda (L & TL), Generalized Logistic (L), Generalized Normal (L), Generalized Pareto (L[RC] & TL), Gumbel (L), Kappa (L), Kappa-Mu (L), Kumaraswamy (L), Laplace (L), Normal (L), 3-parameter log-Normal (L), Pearson Type III (L), Rayleigh (L), Reverse Gumbel (L[RC]), Rice/Rician (L), Truncated Exponential (L), Wakeby (L), and Weibull (L).
Author: William Asquith
Maintainer: William Asquith
Diff between lmomco versions 1.7.9 dated 2013-12-03 and 1.8.1 dated 2014-01-27
DESCRIPTION | 10 MD5 | 560 +++++++++++++++++++++--------------------- NAMESPACE | 557 ++++++++++++++++++++--------------------- NEWS | 23 + R/dat2bernqua.R | 107 ++++++-- R/lmoms.bernstein.R |only R/pfactor.bernstein.R |only man/Apwm2BpwmRC.Rd | 6 man/Bpwm2ApwmRC.Rd | 6 man/LaguerreHalf.Rd | 2 man/Lcomoment.Lk12.Rd | 1 man/Lcomoment.Wk.Rd | 1 man/Lcomoment.coefficients.Rd | 1 man/Lcomoment.correlation.Rd | 1 man/Lcomoment.matrix.Rd | 1 man/T2prob.Rd | 2 man/TLmom.Rd | 18 - man/TLmoms.Rd | 14 - man/are.lmom.valid.Rd | 12 man/are.par.valid.Rd | 2 man/are.paraep4.valid.Rd | 2 man/are.parcau.valid.Rd | 8 man/are.paremu.valid.Rd | 4 man/are.parexp.valid.Rd | 7 man/are.pargam.valid.Rd | 7 man/are.pargev.valid.Rd | 7 man/are.pargld.valid.Rd | 4 man/are.parglo.valid.Rd | 7 man/are.pargno.valid.Rd | 7 man/are.pargpa.valid.Rd | 7 man/are.pargum.valid.Rd | 7 man/are.parkap.valid.Rd | 7 man/are.parkmu.valid.Rd | 4 man/are.parkur.valid.Rd | 7 man/are.parlap.valid.Rd | 2 man/are.parln3.valid.Rd | 6 man/are.parnor.valid.Rd | 7 man/are.parpe3.valid.Rd | 7 man/are.parray.valid.Rd | 3 man/are.parrevgum.valid.Rd | 6 man/are.parrice.valid.Rd | 3 man/are.partexp.valid.Rd | 2 man/are.parwak.valid.Rd | 6 man/are.parwei.valid.Rd | 5 man/cdf2lmom.Rd | 3 man/cdf2lmoms.Rd | 3 man/cdfaep4.Rd | 1 man/cdfcau.Rd | 3 man/cdfemu.Rd | 7 man/cdfexp.Rd | 1 man/cdfgam.Rd | 3 man/cdfgev.Rd | 1 man/cdfgld.Rd | 1 man/cdfglo.Rd | 1 man/cdfgno.Rd | 1 man/cdfgpa.Rd | 1 man/cdfgum.Rd | 1 man/cdfkap.Rd | 1 man/cdfkmu.Rd | 4 man/cdfkur.Rd | 1 man/cdflap.Rd | 1 man/cdfln3.Rd | 1 man/cdfnor.Rd | 1 man/cdfpe3.Rd | 1 man/cdfray.Rd | 1 man/cdfrevgum.Rd | 1 man/cdfrice.Rd | 1 man/cdftexp.Rd | 1 man/cdfwak.Rd | 1 man/cdfwei.Rd | 9 man/check.fs.Rd | 20 - man/check.pdf.Rd | 6 man/dat2bernqua.Rd | 130 ++++++++- man/dist.list.Rd | 2 man/dlmomco.Rd | 5 man/expect.max.ostat.Rd | 2 man/f2flo.Rd | 2 man/f2fpds.Rd | 2 man/fliplmoms.Rd | 5 man/flo2f.Rd | 2 man/fpds2f.Rd | 2 man/freq.curve.all.Rd | 55 ++-- man/gen.freq.curves.Rd | 4 man/genci.Rd | 3 man/gini.mean.diff.Rd | 2 man/harmonic.mean.Rd | 6 man/hlmomco.Rd | 6 man/is.aep4.Rd | 2 man/is.cau.Rd | 4 man/is.emu.Rd | 2 man/is.exp.Rd | 4 man/is.gam.Rd | 4 man/is.gev.Rd | 4 man/is.gld.Rd | 2 man/is.glo.Rd | 4 man/is.gno.Rd | 4 man/is.gpa.Rd | 4 man/is.gum.Rd | 4 man/is.kap.Rd | 4 man/is.kmu.Rd | 2 man/is.kur.Rd | 4 man/is.lap.Rd | 2 man/is.ln3.Rd | 4 man/is.nor.Rd | 4 man/is.pe3.Rd | 4 man/is.ray.Rd | 4 man/is.revgum.Rd | 4 man/is.rice.Rd | 2 man/is.texp.Rd | 2 man/is.wak.Rd | 4 man/is.wei.Rd | 4 man/lcomoms2.Rd | 2 man/lmom.ub.Rd | 10 man/lmom2par.Rd | 2 man/lmom2pwm.Rd | 12 man/lmom2vec.Rd | 2 man/lmomRCmark.Rd | 6 man/lmomTLgld.Rd | 2 man/lmomTLgpa.Rd | 6 man/lmomaep4.Rd | 2 man/lmomcau.Rd | 8 man/lmomcoBook.Rd | 4 man/lmomemu.Rd | 4 man/lmomexp.Rd | 4 man/lmomgam.Rd | 4 man/lmomgev.Rd | 4 man/lmomgld.Rd | 2 man/lmomglo.Rd | 6 man/lmomgno.Rd | 8 man/lmomgpa.Rd | 4 man/lmomgpaRC.Rd | 6 man/lmomgum.Rd | 4 man/lmomkap.Rd | 4 man/lmomkmu.Rd | 6 man/lmomkur.Rd | 7 man/lmomlap.Rd | 2 man/lmomln3.Rd | 8 man/lmomnor.Rd | 4 man/lmompe3.Rd | 6 man/lmomray.Rd | 2 man/lmomrevgum.Rd | 6 man/lmomrice.Rd | 4 man/lmoms.Rd | 5 man/lmoms.bernstein.Rd |only man/lmoms.bootbarvar.Rd | 6 man/lmomsRCmark.Rd | 4 man/lmomsf01.Rd | 3 man/lmomtexp.Rd | 2 man/lmomwak.Rd | 4 man/lmomwei.Rd | 4 man/lmorph.Rd | 3 man/lmrdia.Rd | 1 man/lmrdiscord.Rd | 3 man/nonexceeds.Rd | 2 man/par2cdf.Rd | 2 man/par2cdf2.Rd | 4 man/par2lmom.Rd | 2 man/par2pdf.Rd | 6 man/par2qua.Rd | 6 man/par2qua2.Rd | 7 man/par2vec.Rd | 6 man/parTLgld.Rd | 2 man/parTLgpa.Rd | 2 man/paraep4.Rd | 2 man/parcau.Rd | 6 man/paremu.Rd | 4 man/parexp.Rd | 2 man/pargam.Rd | 2 man/pargev.Rd | 2 man/pargld.Rd | 2 man/parglo.Rd | 2 man/pargno.Rd | 2 man/pargpa.Rd | 3 man/pargpaRC.Rd | 6 man/pargum.Rd | 2 man/parkap.Rd | 2 man/parkmu.Rd | 6 man/parkur.Rd | 3 man/parlap.Rd | 2 man/parln3.Rd | 2 man/parnor.Rd | 3 man/parpe3.Rd | 2 man/parray.Rd | 2 man/parrevgum.Rd | 8 man/parrice.Rd | 14 - man/partexp.Rd | 2 man/parwak.Rd | 2 man/parwei.Rd | 2 man/pdfaep4.Rd | 1 man/pdfcau.Rd | 5 man/pdfemu.Rd | 1 man/pdfexp.Rd | 3 man/pdfgam.Rd | 3 man/pdfgev.Rd | 1 man/pdfgld.Rd | 1 man/pdfglo.Rd | 1 man/pdfgno.Rd | 1 man/pdfgpa.Rd | 1 man/pdfgum.Rd | 1 man/pdfkap.Rd | 1 man/pdfkmu.Rd | 1 man/pdfkur.Rd | 1 man/pdflap.Rd | 1 man/pdfln3.Rd | 1 man/pdfnor.Rd | 3 man/pdfpe3.Rd | 1 man/pdfray.Rd | 1 man/pdfrevgum.Rd | 1 man/pdfrice.Rd | 1 man/pdftexp.Rd | 1 man/pdfwak.Rd | 1 man/pdfwei.Rd | 1 man/pfactor.bernstein.Rd |only man/plmomco.Rd | 4 man/plotlmrdia.Rd | 1 man/pmoms.Rd | 4 man/pp.Rd | 5 man/pp.f.Rd | 3 man/pp.median.Rd | 3 man/prettydist.Rd | 2 man/prob2T.Rd | 2 man/pwm.Rd | 3 man/pwm.beta2alpha.Rd | 2 man/pwm.gev.Rd | 5 man/pwm.pp.Rd | 5 man/pwm.ub.Rd | 3 man/pwm2lmom.Rd | 6 man/pwm2vec.Rd | 2 man/pwmLC.Rd | 4 man/pwmRC.Rd | 4 man/qlmomco.Rd | 6 man/qua.ostat.Rd | 5 man/qua2ci.Rd | 2 man/quaaep4.Rd | 1 man/quaaep4kapmix.Rd | 3 man/quacau.Rd | 3 man/quaemu.Rd | 1 man/quaexp.Rd | 3 man/quagam.Rd | 1 man/quagev.Rd | 3 man/quagld.Rd | 1 man/quaglo.Rd | 1 man/quagno.Rd | 1 man/quagpa.Rd | 1 man/quagum.Rd | 1 man/quakap.Rd | 1 man/quakmu.Rd | 1 man/quakur.Rd | 1 man/qualap.Rd | 1 man/qualn3.Rd | 1 man/quanor.Rd | 3 man/quape3.Rd | 1 man/quaray.Rd | 1 man/quarevgum.Rd | 5 man/quarice.Rd | 1 man/quatexp.Rd | 1 man/quawak.Rd | 1 man/quawei.Rd | 3 man/rlmomco.Rd | 5 man/sen.mean.Rd | 3 man/tau34sq.normtest.Rd | 4 man/theoLmoms.Rd | 4 man/theoLmoms.max.ostat.Rd | 3 man/theoTLmoms.Rd | 3 man/theopwms.Rd | 4 man/tlmrcau.Rd | 2 man/tlmrexp.Rd | 2 man/tlmrgev.Rd | 2 man/tlmrglo.Rd | 2 man/tlmrgno.Rd | 2 man/tlmrgpa.Rd | 2 man/tlmrgum.Rd | 2 man/tlmrln3.Rd | 6 man/tlmrnor.Rd | 2 man/tlmrpe3.Rd | 2 man/tlmrray.Rd | 2 man/vec2TLmom.Rd | 2 man/vec2lmom.Rd | 2 man/vec2par.Rd | 2 man/vec2pwm.Rd | 2 man/x2xlo.Rd | 2 man/z.par2cdf.Rd | 2 man/z.par2qua.Rd | 2 283 files changed, 1270 insertions(+), 1095 deletions(-)
Title: Programming with Big Data -- Scalable Linear Algebra Packages
Description: pbdSLAP utilizes scalable linear algebra packages mainly
including BLACS, PBLAS, and ScaLAPACK in double precision via
pbdMPI based on ScaLAPACK version 2.0.2.
Author: Wei-Chen Chen [aut, cre],
Drew Schmidt [aut],
George Ostrouchov [aut],
Pragneshkumar Patel [aut]
Maintainer: Wei-Chen Chen
Diff between pbdSLAP versions 0.1-6 dated 2013-07-05 and 0.1-7 dated 2014-01-27
pbdSLAP-0.1-6/pbdSLAP/ChangeNote |only pbdSLAP-0.1-6/pbdSLAP/INSTALL.win.bin |only pbdSLAP-0.1-6/pbdSLAP/INSTALL.win.src |only pbdSLAP-0.1-6/pbdSLAP/inst/doc/pbdSLAP-guide.R |only pbdSLAP-0.1-7/pbdSLAP/ChangeLog | 9 ++ pbdSLAP-0.1-7/pbdSLAP/DESCRIPTION | 23 ++--- pbdSLAP-0.1-7/pbdSLAP/INSTALL | 45 ++++++++++ pbdSLAP-0.1-7/pbdSLAP/MD5 | 35 +++---- pbdSLAP-0.1-7/pbdSLAP/R/get_conf.r | 9 +- pbdSLAP-0.1-7/pbdSLAP/R/zzz.r | 6 - pbdSLAP-0.1-7/pbdSLAP/README | 2 pbdSLAP-0.1-7/pbdSLAP/cleanup | 1 pbdSLAP-0.1-7/pbdSLAP/inst/Change_Note.txt |only pbdSLAP-0.1-7/pbdSLAP/inst/doc/pbdSLAP-guide.Rnw | 17 ++- pbdSLAP-0.1-7/pbdSLAP/inst/doc/pbdSLAP-guide.pdf |binary pbdSLAP-0.1-7/pbdSLAP/man/00_pbdSLAP-package.Rd | 1 pbdSLAP-0.1-7/pbdSLAP/src/Makevars.win | 8 + pbdSLAP-0.1-7/pbdSLAP/src/REDIST/pgemraux.c | 2 pbdSLAP-0.1-7/pbdSLAP/src/SLmake.inc.win | 2 pbdSLAP-0.1-7/pbdSLAP/vignettes/pbdSLAP-guide.Rnw | 17 ++- pbdSLAP-0.1-7/pbdSLAP/vignettes/pbdSLAP-include/01-acknowledgement.tex | 2 21 files changed, 127 insertions(+), 52 deletions(-)
Title: Programming with Big Data -- Interface to MPI
Description: pbdMPI provides an efficient interface to MPI by utilizing S4
classes and methods with a focus on Single Program/Multiple Data (SPMD)
parallel programming style, which is intended for batch parallel
execution.
Author: Wei-Chen Chen [aut, cre],
George Ostrouchov [aut],
Drew Schmidt [aut],
Pragneshkumar Patel [aut],
Hao Yu [aut],
Christian Heckendorf [ctb],
Brian Ripley [ctb]
Maintainer: Wei-Chen Chen
Diff between pbdMPI versions 0.2-1 dated 2013-09-27 and 0.2-2 dated 2014-01-27
pbdMPI-0.2-1/pbdMPI/R/get_mpi.r |only pbdMPI-0.2-1/pbdMPI/man/11_d.control.Rd |only pbdMPI-0.2-1/pbdMPI/man/ww_get.jid.Rd |only pbdMPI-0.2-1/pbdMPI/man/ww_print_cat.Rd |only pbdMPI-0.2-1/pbdMPI/man/ww_seed.Rd |only pbdMPI-0.2-1/pbdMPI/man/xx_comm.sort.Rd |only pbdMPI-0.2-1/pbdMPI/man/xx_comm.timer.Rd |only pbdMPI-0.2-1/pbdMPI/man/yy_api.apply.Rd |only pbdMPI-0.2-1/pbdMPI/man/yy_api.task.pull.Rd |only pbdMPI-0.2-1/pbdMPI/man/zz_spmd.internal.Rd |only pbdMPI-0.2-2/pbdMPI/ChangeLog | 39 + pbdMPI-0.2-2/pbdMPI/DESCRIPTION | 30 - pbdMPI-0.2-2/pbdMPI/INSTALL | 4 pbdMPI-0.2-2/pbdMPI/MD5 | 258 +++++----- pbdMPI-0.2-2/pbdMPI/NAMESPACE | 34 - pbdMPI-0.2-2/pbdMPI/R/api_lapply.r | 22 pbdMPI-0.2-2/pbdMPI/R/api_sapply.r | 15 pbdMPI-0.2-2/pbdMPI/R/api_task_pull.r | 142 +++++ pbdMPI-0.2-2/pbdMPI/R/api_tool.r | 6 pbdMPI-0.2-2/pbdMPI/R/comm_balance.r |only pbdMPI-0.2-2/pbdMPI/R/comm_base.r |only pbdMPI-0.2-2/pbdMPI/R/comm_range.r |only pbdMPI-0.2-2/pbdMPI/R/comm_read.r |only pbdMPI-0.2-2/pbdMPI/R/comm_seed.r | 72 ++ pbdMPI-0.2-2/pbdMPI/R/comm_sort.r | 2 pbdMPI-0.2-2/pbdMPI/R/comm_tool.r | 33 + pbdMPI-0.2-2/pbdMPI/R/comm_which.r |only pbdMPI-0.2-2/pbdMPI/R/comm_write.r |only pbdMPI-0.2-2/pbdMPI/R/get_winmpi.r |only pbdMPI-0.2-2/pbdMPI/R/spmd_communicator.r | 93 +-- pbdMPI-0.2-2/pbdMPI/R/spmd_communicator_spawn.r |only pbdMPI-0.2-2/pbdMPI/R/spmd_tool.r | 2 pbdMPI-0.2-2/pbdMPI/R/windows/zzz.r | 67 +- pbdMPI-0.2-2/pbdMPI/R/zzz.r.in | 61 +- pbdMPI-0.2-2/pbdMPI/README | 2 pbdMPI-0.2-2/pbdMPI/cleanup | 1 pbdMPI-0.2-2/pbdMPI/configure | 225 ++------ pbdMPI-0.2-2/pbdMPI/configure.ac | 68 ++ pbdMPI-0.2-2/pbdMPI/data/control.r | 4 pbdMPI-0.2-2/pbdMPI/data/control_io.r |only pbdMPI-0.2-2/pbdMPI/demo/00Index | 2 pbdMPI-0.2-2/pbdMPI/demo/allgather.r | 2 pbdMPI-0.2-2/pbdMPI/demo/allreduce.r | 2 pbdMPI-0.2-2/pbdMPI/demo/any_all.r | 2 pbdMPI-0.2-2/pbdMPI/demo/bcast.r | 2 pbdMPI-0.2-2/pbdMPI/demo/divide.r | 2 pbdMPI-0.2-2/pbdMPI/demo/gather.r | 2 pbdMPI-0.2-2/pbdMPI/demo/pbdApply.r | 2 pbdMPI-0.2-2/pbdMPI/demo/pbdLapply.r | 2 pbdMPI-0.2-2/pbdMPI/demo/reduce.r | 2 pbdMPI-0.2-2/pbdMPI/demo/scatter.r | 2 pbdMPI-0.2-2/pbdMPI/demo/seed.r | 20 pbdMPI-0.2-2/pbdMPI/demo/simple_balance.r |only pbdMPI-0.2-2/pbdMPI/demo/simple_io.r |only pbdMPI-0.2-2/pbdMPI/demo/sort.r | 2 pbdMPI-0.2-2/pbdMPI/demo/task_pull.r | 2 pbdMPI-0.2-2/pbdMPI/inst/doc/pbdMPI-guide.Rnw | 27 - pbdMPI-0.2-2/pbdMPI/inst/doc/pbdMPI-guide.pdf |binary pbdMPI-0.2-2/pbdMPI/inst/examples/test_cs/named.client.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_cs/named.server.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_cs/simple.client.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_cs/simple.server.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_long_vector/allgather.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_long_vector/allreduce.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_long_vector/bcast.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_long_vector/gather.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_long_vector/reduce.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_long_vector/scatter.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_long_vector/send_recv.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_parallel/01_mclapply_spmd.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_parallel/02_parMM_spmd.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_parallel/03_boot_spmd.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_parallel/04_glm_spmd.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_performance/demo_allgather_spmd.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_performance/demo_scatter_spmd.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_rmpi/allgather_spmd.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_rmpi/allgatherv_spmd.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_rmpi/allreduce_spmd.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_rmpi/bcast_spmd.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_rmpi/gather_spmd.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_rmpi/reduce_spmd.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_rmpi/scatter_spmd.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_rmpi/scatterv_spmd.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_rmpi/sendrecv_spmd.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_s4/01_simple.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_s4/02_mean.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_spmd/allgather.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_spmd/allreduce.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_spmd/bcast.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_spmd/gather.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_spmd/isend_irecv_wait.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_spmd/reduce.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_spmd/replace.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_spmd/scatter.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_spmd/send_recv.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_spmd/sendrecv.r | 2 pbdMPI-0.2-2/pbdMPI/inst/examples/test_spmd/sendrecv_replace.r | 2 pbdMPI-0.2-2/pbdMPI/man/00_pbdMPI-package.Rd | 21 pbdMPI-0.2-2/pbdMPI/man/11_d_control.Rd |only pbdMPI-0.2-2/pbdMPI/man/aa_allgather-method.Rd | 8 pbdMPI-0.2-2/pbdMPI/man/aa_allreduce-method.Rd | 4 pbdMPI-0.2-2/pbdMPI/man/aa_bcast-method.Rd | 4 pbdMPI-0.2-2/pbdMPI/man/aa_gather-method.Rd | 10 pbdMPI-0.2-2/pbdMPI/man/aa_reduce-method.Rd | 6 pbdMPI-0.2-2/pbdMPI/man/aa_scatter-method.Rd | 10 pbdMPI-0.2-2/pbdMPI/man/ab_recv-method.Rd | 8 pbdMPI-0.2-2/pbdMPI/man/ab_send-method.Rd | 8 pbdMPI-0.2-2/pbdMPI/man/ac_irecv-method.Rd | 12 pbdMPI-0.2-2/pbdMPI/man/ac_isend-method.Rd | 8 pbdMPI-0.2-2/pbdMPI/man/ad_sendrecv-method.Rd | 8 pbdMPI-0.2-2/pbdMPI/man/ad_sendrecv.replace-method.Rd | 12 pbdMPI-0.2-2/pbdMPI/man/cc_comm.Rd | 74 ++ pbdMPI-0.2-2/pbdMPI/man/dd_info.Rd | 2 pbdMPI-0.2-2/pbdMPI/man/dd_sourcetag.Rd | 2 pbdMPI-0.2-2/pbdMPI/man/dd_wait.Rd | 2 pbdMPI-0.2-2/pbdMPI/man/vv_get_jid.Rd |only pbdMPI-0.2-2/pbdMPI/man/vv_print_cat.Rd |only pbdMPI-0.2-2/pbdMPI/man/vv_seed.Rd |only pbdMPI-0.2-2/pbdMPI/man/ww_comm_balance.Rd |only pbdMPI-0.2-2/pbdMPI/man/ww_comm_read.Rd |only pbdMPI-0.2-2/pbdMPI/man/ww_comm_write.Rd |only pbdMPI-0.2-2/pbdMPI/man/xx_comm_Rprof.Rd |only pbdMPI-0.2-2/pbdMPI/man/xx_comm_any_all.Rd | 2 pbdMPI-0.2-2/pbdMPI/man/xx_comm_base.Rd |only pbdMPI-0.2-2/pbdMPI/man/xx_comm_range.Rd |only pbdMPI-0.2-2/pbdMPI/man/xx_comm_sort.Rd |only pbdMPI-0.2-2/pbdMPI/man/xx_comm_stop_warning.Rd | 2 pbdMPI-0.2-2/pbdMPI/man/xx_comm_timer.Rd |only pbdMPI-0.2-2/pbdMPI/man/xx_comm_which.Rd |only pbdMPI-0.2-2/pbdMPI/man/yy_api_apply.Rd |only pbdMPI-0.2-2/pbdMPI/man/yy_api_task_pull.Rd |only pbdMPI-0.2-2/pbdMPI/man/zz_spmd_internal.Rd |only pbdMPI-0.2-2/pbdMPI/src/Makevars.in | 3 pbdMPI-0.2-2/pbdMPI/src/Makevars.win | 157 +++++- pbdMPI-0.2-2/pbdMPI/src/install.libs.R | 2 pbdMPI-0.2-2/pbdMPI/src/msmpi.def |only pbdMPI-0.2-2/pbdMPI/src/pkg_global.h | 5 pbdMPI-0.2-2/pbdMPI/src/spmd.h | 14 pbdMPI-0.2-2/pbdMPI/src/spmd_communicator.c | 62 -- pbdMPI-0.2-2/pbdMPI/src/spmd_communicator_spawn.c |only pbdMPI-0.2-2/pbdMPI/vignettes/pbdMPI-guide.Rnw | 27 - pbdMPI-0.2-2/pbdMPI/vignettes/pbdMPI-include/01-acknowledgement.tex | 2 pbdMPI-0.2-2/pbdMPI/vignettes/pbdMPI-include/01-copyright.tex | 2 pbdMPI-0.2-2/pbdMPI/vignettes/pbdMPI-include/01-introduction.tex | 13 pbdMPI-0.2-2/pbdMPI/vignettes/pbdMPI-include/02-performance.tex | 2 pbdMPI-0.2-2/pbdMPI/vignettes/pbdMPI-include/03-faq.tex | 50 + pbdMPI-0.2-2/pbdMPI/vignettes/pbdMPI-include/04-windows.tex | 47 + pbdMPI-0.2-2/pbdMPI/vignettes/pbdMPI-include/05-analog.tex | 4 pbdMPI-0.2-2/pbdMPI/vignettes/pbdMPI-include/07-simpleio.tex |only pbdMPI-0.2-2/pbdMPI/vignettes/pbdMPI-include/pbdMPI.bib | 23 150 files changed, 1201 insertions(+), 746 deletions(-)
Title: An R package for the analysis of epidemiological data
Description: An R package for the analysis of epidemiological data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, and computing confidence intervals around incidence risk and incidence rate estimates. Miscellaneous functions for use in meta-analysis, diagnostic test interpretation, and sample size calculations.
Author: Mark Stevenson
Maintainer: Mark Stevenson
Diff between epiR versions 0.9-54 dated 2014-01-08 and 0.9-56 dated 2014-01-27
DESCRIPTION | 8 - MD5 | 6 - R/epi.2by2.r | 244 +++++++++++++++++++++++++++++++++++++++++--------------- man/epi.2by2.Rd | 39 ++++++-- 4 files changed, 213 insertions(+), 84 deletions(-)
Title: Entropy reweighting to create balanced samples
Description: Package implements entropy balancing, a data preprocessing procedure that allows users to reweight a dataset such that the covariate distributions in the reweighted data satisfy a set of user specified moment conditions. This can be useful to create balanced samples in observational studies with a binary treatment where the control group data can be reweighted to match the covariate moments in the treatment group. Entropy balancing can also be used to reweight a survey sample to known characteristics from a target population.
Author: Jens Hainmueller
Maintainer: Jens Hainmueller
Diff between ebal versions 0.1-5 dated 2013-10-16 and 0.1-6 dated 2014-01-27
DESCRIPTION | 14 +-- MD5 | 16 +-- NAMESPACE | 2 R/zzz.r | 26 ++--- man/baltest.collect.Rd | 106 +++++++++++------------ man/eb.Rd | 107 +++++++++++------------ man/ebalance.Rd | 222 +++++++++++++++++++++++-------------------------- man/ebalance.trim.Rd | 211 ++++++++++++++++++++++------------------------ man/line.searcher.Rd | 93 ++++++++++---------- 9 files changed, 390 insertions(+), 407 deletions(-)
Title: Doubly Robust Generalized Estimating Equations
Description: The package provides functions to estimate parameters quantifying
an association between an exposure and an outcome in a generalized
estimating equations model in the presence of nuisance variables. Three methods are implemented:
outcome nuisance model based estimation where a model for the association
between the nuisance factors and the outcome is assumed, exposure nuisance model
based estimation where a model for the association between the nuisance factors
and the exposure is assumed and doubly robust estimation where both models are
used. In doubly robust estimation, the estimates will be consistent when
at least one of the models are correctly specified, not necessarily both.
Author: Johan Zetterqvist
Maintainer: Johan Zetterqvist
Diff between drgee versions 1.0 dated 2013-12-19 and 1.0.1 dated 2014-01-27
DESCRIPTION | 8 ++++---- MD5 | 5 +++-- NEWS |only R/drFit.R | 6 +++--- 4 files changed, 10 insertions(+), 9 deletions(-)
Title: Sound analysis and synthesis
Description: seewave provides functions for analysing, manipulating, displaying, editing and synthesizing time waves (particularly sound). This package processes time analysis (oscillograms and envelopes), spectral content, resonance quality factor, entropy, cross correlation and autocorrelation, zero-crossing, dominant frequency, analytic signal, frequency coherence, 2D and 3D spectrograms and many other analyses.
Author: Jerome Sueur
Maintainer: Jerome Sueur
Diff between seewave versions 1.7.2 dated 2013-08-30 and 1.7.3 dated 2014-01-27
DESCRIPTION | 8 MD5 | 37 ++-- NEWS | 14 + R/seewave.r | 344 ++++++++++++++++++++++++++++++++++++++---- build |only inst/doc/seewave_IO.pdf |binary inst/doc/seewave_analysis.pdf |binary man/H.Rd | 4 man/NDSI.Rd |only man/SAX.Rd |only man/TKEO.Rd |only man/acoustat.Rd |only man/diffspec.Rd | 2 man/echo.Rd | 11 - man/rmoffset.Rd | 23 +- man/seewave.package.Rd | 9 - man/soundscapespec.Rd |only man/spectro.Rd | 8 man/symba.Rd | 2 man/synth.Rd | 20 +- man/synth2.Rd | 26 +-- man/zc.Rd | 13 - man/zcr.Rd |only 23 files changed, 421 insertions(+), 100 deletions(-)
Title: meta-analysis of genome-wide SNP association results
Description: A package for meta-analysis of genome-wide association
scans between quantitative or binary traits and SNPs
Author: Maksim Struchalin, Yurii Aulchenko
Maintainer: L.C. Karssen
Diff between MetABEL versions 0.0-3 dated 2011-02-10 and 0.1-0 dated 2014-01-27
DESCRIPTION | 18 - MD5 |only R/forestplot.R | 136 +++++---- R/metagwa.files.R | 215 ++++++++------ R/metagwa.tables.R | 754 ++++++++++++++++++++++++++++---------------------- man/forestplot.Rd | 26 - man/metagwa.files.Rd | 64 ++-- man/metagwa.tables.Rd | 21 - 8 files changed, 719 insertions(+), 515 deletions(-)
Title: Structural Time Series Models
Description: This package provides algorithms to fit
structural time series models by maximum likelihood.
Author: Javier López-de-Lacalle
Maintainer: Javier López-de-Lacalle
Diff between stsm versions 1.1 dated 2014-01-26 and 1.2 dated 2014-01-27
DESCRIPTION | 6 +++--- MD5 | 6 +++--- src/KFKSDS-steady-v2.cpp | 8 ++++---- src/KFKSDS-steady.cpp | 20 ++++++++++---------- 4 files changed, 20 insertions(+), 20 deletions(-)
Title: Efficiently Read Sequence Data (VCF format, BCF format and METAL
format) into R
Description: Integrate sequencing data (VCF) or meta-analysis results in R
Author: Xiaowei Zhan
Maintainer: Xiaowei Zhan
Diff between seqminer versions 2.0 dated 2013-11-20 and 2.2 dated 2014-01-27
seqminer-2.0/seqminer/man/tabix.Rd |only seqminer-2.0/seqminer/src/config.h |only seqminer-2.2/seqminer/ChangeLog | 15 seqminer-2.2/seqminer/DESCRIPTION | 7 seqminer-2.2/seqminer/MD5 | 69 +- seqminer-2.2/seqminer/NAMESPACE | 9 seqminer-2.2/seqminer/R/seqminer.R | 98 +++ seqminer-2.2/seqminer/inst/tests/testthat.R | 4 seqminer-2.2/seqminer/man/SeqMiner.Rd | 16 seqminer-2.2/seqminer/man/hasIndex.Rd | 8 seqminer-2.2/seqminer/man/readVCFToListByGene.Rd | 15 seqminer-2.2/seqminer/man/readVCFToListByRange.Rd | 14 seqminer-2.2/seqminer/man/readVCFToMatrixByGene.Rd | 10 seqminer-2.2/seqminer/man/readVCFToMatrixByRange.Rd | 9 seqminer-2.2/seqminer/man/rvmeta.readCovByRange.Rd | 9 seqminer-2.2/seqminer/man/rvmeta.readDataByGene.Rd | 18 seqminer-2.2/seqminer/man/rvmeta.readDataByRange.Rd | 17 seqminer-2.2/seqminer/man/rvmeta.readNullModel.Rd | 11 seqminer-2.2/seqminer/man/rvmeta.readScoreByRange.Rd | 11 seqminer-2.2/seqminer/man/rvmeta.readSkewByRange.Rd | 9 seqminer-2.2/seqminer/man/rvmeta.writeCovData.Rd |only seqminer-2.2/seqminer/man/rvmeta.writeScoreData.Rd |only seqminer-2.2/seqminer/man/tabix.createIndex.Rd |only seqminer-2.2/seqminer/man/tabix.createIndex.meta.Rd |only seqminer-2.2/seqminer/man/tabix.createIndex.vcf.Rd |only seqminer-2.2/seqminer/man/tabix.read.Rd |only seqminer-2.2/seqminer/man/tabix.read.header.Rd | 10 seqminer-2.2/seqminer/man/tabix.read.table.Rd | 12 seqminer-2.2/seqminer/src/FileFormat.h |only seqminer-2.2/seqminer/src/IO.h | 3 seqminer-2.2/seqminer/src/R_CPP_interface.cpp | 18 seqminer-2.2/seqminer/src/R_CPP_interface.h | 2 seqminer-2.2/seqminer/src/TypeConversion.h | 11 seqminer-2.2/seqminer/src/ksort.h | 2 seqminer-2.2/seqminer/src/rvMetaLoader.cpp | 483 +++++++++++-------- seqminer-2.2/seqminer/src/rvMetaLoader.h | 2 seqminer-2.2/seqminer/src/seqminer.c | 30 + seqminer-2.2/seqminer/src/tabixLoader.cpp | 20 seqminer-2.2/seqminer/src/tabixLoader.h | 7 seqminer-2.2/seqminer/src/vcf2genoLoader.cpp | 2 40 files changed, 632 insertions(+), 319 deletions(-)
Title: R interface to the QuantLib library
Description: The RQuantLib package makes parts of QuantLib visible to the R
user. Currently a number option pricing functions are included, both vanilla
and exotic, as well as a broad range of fixed-income functions. Also included
are general calendaring and holiday utilities. Further software contributions
are welcome.
The QuantLib project aims to provide a comprehensive software framework for
quantitative finance. The goal is to provide a standard open source library
for quantitative analysis, modeling, trading, and risk management of
financial assets.
The Windows binary version is self-contained and does not require a QuantLib
(or Boost) installation.
RQuantLib uses the Rcpp R/C++ interface class library. See the Rcpp package
on CRAN (or R-Forge) for more information on Rcpp.
Note that while RQuantLib's code is licensed under the GPL (v2 or later),
QuantLib itself is released under a somewhat less restrictive Open Source
license (see QuantLib-License.txt).
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel
Diff between RQuantLib versions 0.3.10 dated 2013-02-18 and 0.3.11 dated 2014-01-27
RQuantLib-0.3.10/RQuantLib/src/rquantlib.h |only RQuantLib-0.3.11/RQuantLib/ChangeLog | 40 +++++++++ RQuantLib-0.3.11/RQuantLib/DESCRIPTION | 47 +++++------ RQuantLib-0.3.11/RQuantLib/MD5 | 70 ++++++++--------- RQuantLib-0.3.11/RQuantLib/NAMESPACE | 3 RQuantLib-0.3.11/RQuantLib/R/asian.R | 2 RQuantLib-0.3.11/RQuantLib/R/bond.R | 2 RQuantLib-0.3.11/RQuantLib/R/calendars.R | 2 RQuantLib-0.3.11/RQuantLib/R/hullWhiteCalibration.R | 2 RQuantLib-0.3.11/RQuantLib/R/inline.R |only RQuantLib-0.3.11/RQuantLib/R/mod.R |only RQuantLib-0.3.11/RQuantLib/README.md |only RQuantLib-0.3.11/RQuantLib/configure.in | 2 RQuantLib-0.3.11/RQuantLib/inst/include |only RQuantLib-0.3.11/RQuantLib/man/AsianOption.Rd | 5 - RQuantLib-0.3.11/RQuantLib/man/BinaryOption.Rd | 3 RQuantLib-0.3.11/RQuantLib/man/Bond.Rd | 2 RQuantLib-0.3.11/RQuantLib/man/BondUtilities.Rd | 15 ++- RQuantLib-0.3.11/RQuantLib/man/Calendars.Rd | 5 - RQuantLib-0.3.11/RQuantLib/man/EuropeanOptionArrays.Rd | 6 - RQuantLib-0.3.11/RQuantLib/man/FixedRateBond.Rd | 9 +- RQuantLib-0.3.11/RQuantLib/man/ImpliedVolatility.Rd | 3 RQuantLib-0.3.11/RQuantLib/man/ZeroCouponBond.Rd | 2 RQuantLib-0.3.11/RQuantLib/src/Makevars.in | 2 RQuantLib-0.3.11/RQuantLib/src/Makevars.win | 4 RQuantLib-0.3.11/RQuantLib/src/asian.cpp | 2 RQuantLib-0.3.11/RQuantLib/src/barrier_binary.cpp | 2 RQuantLib-0.3.11/RQuantLib/src/bermudan.cpp | 2 RQuantLib-0.3.11/RQuantLib/src/bonds.cpp | 2 RQuantLib-0.3.11/RQuantLib/src/calendars.cpp | 2 RQuantLib-0.3.11/RQuantLib/src/curves.cpp | 2 RQuantLib-0.3.11/RQuantLib/src/daycounter.cpp | 2 RQuantLib-0.3.11/RQuantLib/src/discount.cpp | 2 RQuantLib-0.3.11/RQuantLib/src/hullwhite.cpp | 2 RQuantLib-0.3.11/RQuantLib/src/implieds.cpp | 2 RQuantLib-0.3.11/RQuantLib/src/modules.cpp |only RQuantLib-0.3.11/RQuantLib/src/utils.cpp | 6 - RQuantLib-0.3.11/RQuantLib/src/vanilla.cpp | 2 RQuantLib-0.3.11/RQuantLib/src/zero.cpp | 2 39 files changed, 157 insertions(+), 99 deletions(-)
Title: Kalman Filter, Smoother and Disturbance Smoother
Description: Naive implementation of the Kalman filter, smoother and disturbance
smoother for state space models. An interface to other implementations of the
filter that are available in other packages is also provided.
Author: Javier López-de-Lacalle
Maintainer: Javier López-de-Lacalle
Diff between KFKSDS versions 1.2 dated 2014-01-26 and 1.3 dated 2014-01-27
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- src/KF-deriv.cpp | 15 +++++++++------ src/KF.c | 6 +++--- src/KFKSDS-deriv-steady.cpp | 14 ++++++++------ src/KSDS-deriv.cpp | 10 ++++++---- 6 files changed, 34 insertions(+), 27 deletions(-)
Title: Functions for medical statistics book with some demographic data
Description: Several utility functions for the book entitled
"Practices of Medical and Health Data Analysis using R"
(Pearson Education Japan, 2007) with Japanese demographic
data and some demographic analysis related functions.
Author: Minato Nakazawa
Maintainer: Minato Nakazawa
Diff between fmsb versions 0.4.2 dated 2014-01-05 and 0.4.3 dated 2014-01-27
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 4 ++++ R/fmsb.R | 37 ++++++++++++++++++++++--------------- man/pvalueplot.Rd | 17 +++++++++-------- 5 files changed, 43 insertions(+), 31 deletions(-)