Title: Meta-Analysis with Mean Differences
Diff between MAd versions 0.8 dated 2010-07-07 and 0.8-1 dated 2014-02-02
Description: This is an integrated meta-analysis package for conducting a research synthesis with mean differences data. One of the unique features of this package is in its integration of user-friendly functions to facilitate statistical analyses at each stage in a meta-analysis with mean differences. It uses recommended procedures as described in The Handbook of Research Synthesis and Meta-Analysis (Cooper, Hedges, & Valentine, 2009).
Author: AC Del Re & William T. Hoyt
Maintainer: AC Del Re
MAd-0.8-1/MAd/DESCRIPTION | 21
MAd-0.8-1/MAd/MD5 |only
MAd-0.8-1/MAd/NAMESPACE |only
MAd-0.8-1/MAd/NEWS |only
MAd-0.8-1/MAd/R/MAd.R | 1224 ++++++++++++------------------------
MAd-0.8-1/MAd/data |only
MAd-0.8-1/MAd/inst/CITATION |only
MAd-0.8-1/MAd/man/MAd-package.Rd |only
MAd-0.8-1/MAd/man/agg.rd | 140 +++-
MAd-0.8-1/MAd/man/agg1.Rd |only
MAd-0.8-1/MAd/man/agg2.Rd |only
MAd-0.8-1/MAd/man/aggB.Rd |only
MAd-0.8-1/MAd/man/aggs1.Rd |only
MAd-0.8-1/MAd/man/aggs2.Rd |only
MAd-0.8-1/MAd/man/aggsB.Rd |only
MAd-0.8-1/MAd/man/dat.cooper15.3.rd |only
MAd-0.8-1/MAd/man/dat.cooperA2.rd |only
MAd-0.8-1/MAd/man/dat.delre.rd |only
MAd-0.8-1/MAd/man/dat.delre1.rd |only
MAd-0.8-1/MAd/man/dat.delre2.rd |only
MAd-0.8-1/MAd/man/dat.hoyt.rd |only
MAd-0.8-1/MAd/man/mareg.rd | 8
MAd-0.8-1/MAd/man/omni.rd | 3
MAd-0.8-1/MAd/man/plotcat.rd | 7
MAd-0.8-1/MAd/man/plotcon.rd | 32
MAd-0.8-1/MAd/man/robustSE.Rd |only
MAd-0.8-1/MAd/man/wmean.Rd |only
MAd-0.8/MAd/inst/doc |only
MAd-0.8/MAd/man/CatModGraph.Rd |only
MAd-0.8/MAd/man/ComplData.Rd |only
MAd-0.8/MAd/man/ForestPlot.Rd |only
MAd-0.8/MAd/man/FunnelPlot.Rd |only
MAd-0.8/MAd/man/MAd-package.rd |only
MAd-0.8/MAd/man/MAreg1.Rd |only
MAd-0.8/MAd/man/MAreg2.Rd |only
MAd-0.8/MAd/man/MAregGraph.Rd |only
MAd-0.8/MAd/man/MultiModGraph.Rd |only
MAd-0.8/MAd/man/stat_sum_single1.Rd |only
MAd-0.8/MAd/man/stat_sum_single2.Rd |only
39 files changed, 578 insertions(+), 857 deletions(-)
Title: Cultural Consensus Theory applications to data
Diff between CCTpack versions 0.99 dated 2014-01-21 and 1.00 dated 2014-02-02
Description: A user-friendly GUI for the application of Cultural Consensus Theory (CCT) models and methods to consensus data. The models are applied using hierarchical Bayesian inference. The current package version supports binary, ordinal, and continuous data formats.
Author: Royce Anders
Maintainer: Royce Anders
DESCRIPTION | 8
MD5 | 6
R/cctgui.r | 434 ++++++++++++++++++++++++++++++++++++++++++++++++-
man/CCTpack-package.Rd | 4
4 files changed, 440 insertions(+), 12 deletions(-)
Title: Linear mixed-effects models using Eigen and S4
Diff between lme4 versions 1.0-5 dated 2013-10-25 and 1.0-6 dated 2014-02-02
Description: Fit linear and generalized linear mixed-effects models.
The models and their components are represented using S4 classes and
methods. The core computational algorithms are implemented using the
Eigen C++ library for numerical linear algebra and RcppEigen "glue".
Author: Douglas Bates [aut], Martin Maechler [aut],
Ben Bolker [aut, cre], Steven Walker [aut]
Maintainer: Ben Bolker
DESCRIPTION | 13 ++++++-------
MD5 | 14 +++++++-------
NAMESPACE | 1 +
R/lmer.R | 2 +-
man/getME.Rd | 2 +-
src/external.cpp | 8 ++++----
tests/glmer-1.R | 2 +-
tests/glmer-1.Rout | 2 +-
8 files changed, 22 insertions(+), 22 deletions(-)
Title: Test Analysis Modules
Diff between TAM versions 1.0-0 dated 2014-01-01 and 1.0-1 dated 2014-02-02
Description:
The package includes marginal and joint maximum likelihood
estimation of uni- and multidimensional item response models
(Rasch, 2PL, Generalized Partial Credit, Rating Scale, Multi Facets),
fit statistics, standard error estimation, as
well as plausible value imputation and weighted likelihood
estimation of ability.
Author: Thomas Kiefer [aut, cre], Alexander Robitzsch [aut], Margaret Wu [aut]
Maintainer: Thomas Kiefer
DESCRIPTION | 10 +++++-----
MD5 | 6 +++---
NAMESPACE | 3 ++-
inst/NEWS | 3 ++-
4 files changed, 12 insertions(+), 10 deletions(-)
Title: Multivariate Dependence Modeling with Vines
Diff between vines versions 1.0.8 dated 2013-05-14 and 1.0.9 dated 2014-02-02
Description: Vines are graphical models for pair-copula constructions that represent high-dimensional distributions as a factorization of bivariate copulas and marginal density functions. This package contains S4 classes for vines (C-vines and D-vines) and methods for inference, goodness-of-fit tests, density/distribution function evaluation, and simulation.
Author: Yasser Gonzalez-Fernandez [aut, cre],
Marta Soto [aut]
Maintainer: Yasser Gonzalez-Fernandez
DESCRIPTION | 28 +++++--------
MD5 | 56 +++++++++++++-------------
NAMESPACE | 10 ++--
NEWS | 4 +
R/Vine.R | 40 +++++++++----------
R/dimnames.R | 4 -
R/dvine.R | 8 +--
R/h.R | 10 ++--
R/hinverse.R | 8 +--
R/pvine.R | 8 +--
R/rvine.R | 8 +--
R/show.R | 4 -
R/vineFit.R | 12 ++---
R/vineFitML.R | 20 ++++-----
R/vineGoF.R | 12 ++---
R/vineIter.R | 12 ++---
R/vineOrder.R | 4 -
R/vinePIT.R | 20 ++++-----
R/vineParameters.R | 4 -
man/h-methods.Rd | 4 -
man/hinverse-methods.Rd | 6 +-
man/vineOrder.Rd | 6 +-
man/vinePIT-methods.Rd | 6 +-
src/h.c | 4 -
src/h.h | 4 -
src/hinverse.c | 4 -
src/hinverse.h | 4 -
src/register.c | 4 -
tests/hfunctions.R | 100 ++++++++++++++++++++++++------------------------
29 files changed, 206 insertions(+), 208 deletions(-)
Title: R port of the Scilab optimsimplex module
Diff between optimsimplex versions 1.0-4 dated 2011-03-31 and 1.0-5 dated 2014-02-02
Description: Provides a building block for optimization algorithms
based on a simplex. The optimsimplex package may be used in the
following optimization methods: the simplex method of Spendley
et al., the method of Nelder and Mead, Box's algorithm for
constrained optimization, the multi-dimensional search by
Torczon, etc...
Author: Sebastien Bihorel, Michael Baudin (author of the original
module)
Maintainer: Sebastien Bihorel
optimsimplex-1.0-4/optimsimplex/.project |only
optimsimplex-1.0-4/optimsimplex/R/optimsimplex.axes.R |only
optimsimplex-1.0-4/optimsimplex/R/optimsimplex.coords.R |only
optimsimplex-1.0-4/optimsimplex/R/optimsimplex.new.R |only
optimsimplex-1.0-4/optimsimplex/R/optimsimplex.oriented.R |only
optimsimplex-1.0-4/optimsimplex/R/optimsimplex.pfeffer.R |only
optimsimplex-1.0-4/optimsimplex/R/optimsimplex.print.R |only
optimsimplex-1.0-4/optimsimplex/R/optimsimplex.randbounds.R |only
optimsimplex-1.0-4/optimsimplex/R/optimsimplex.spendley.R |only
optimsimplex-1.0-4/optimsimplex/inst/doc/Rd2latex.sh |only
optimsimplex-1.0-4/optimsimplex/inst/doc/optimsimplex-package.tex |only
optimsimplex-1.0-4/optimsimplex/inst/doc/optimsimplex.Rnw |only
optimsimplex-1.0-4/optimsimplex/inst/doc/optimsimplex.bib |only
optimsimplex-1.0-4/optimsimplex/inst/doc/optimsimplex.computefv.tex |only
optimsimplex-1.0-4/optimsimplex/inst/doc/optimsimplex.destroy.tex |only
optimsimplex-1.0-4/optimsimplex/inst/doc/optimsimplex.getall.tex |only
optimsimplex-1.0-4/optimsimplex/inst/doc/optimsimplex.gradientfv.tex |only
optimsimplex-1.0-4/optimsimplex/inst/doc/optimsimplex.log.tex |only
optimsimplex-1.0-4/optimsimplex/inst/doc/optimsimplex.new.tex |only
optimsimplex-1.0-4/optimsimplex/inst/doc/optimsimplex.pdf |only
optimsimplex-1.0-4/optimsimplex/inst/doc/optimsimplex.print.tex |only
optimsimplex-1.0-4/optimsimplex/inst/doc/optimsimplex.reflect.tex |only
optimsimplex-1.0-4/optimsimplex/inst/doc/optimsimplex.setall.tex |only
optimsimplex-1.0-4/optimsimplex/inst/doc/optimsimplex.shrink.tex |only
optimsimplex-1.0-4/optimsimplex/inst/doc/optimsimplex.utils.tex |only
optimsimplex-1.0-4/optimsimplex/man/optimsimplex.new.Rd |only
optimsimplex-1.0-4/optimsimplex/man/optimsimplex.print.Rd |only
optimsimplex-1.0-5/optimsimplex/Changelog | 16 ++++
optimsimplex-1.0-5/optimsimplex/DESCRIPTION | 11 +--
optimsimplex-1.0-5/optimsimplex/MD5 |only
optimsimplex-1.0-5/optimsimplex/NAMESPACE |only
optimsimplex-1.0-5/optimsimplex/R/is.R |only
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.R |only
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.center.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.check.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.compsomefv.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.computefv.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.deltafv.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.deltafvmax.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.destroy.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.dirmat.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.fvmean.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.fvstdev.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.fvvariance.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.getall.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.getallfv.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.getallx.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.getfv.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.getn.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.getnbve.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.getve.R | 13 +--
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.getx.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.gradcenter.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.gradforward.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.gradientfv.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.log.R | 4 -
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.reflect.R | 4 -
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.setall.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.setallfv.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.setallx.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.setfv.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.setn.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.setnbve.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.setve.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.setx.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.shrink.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.size.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.sort.R | 2
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.tostring.R | 33 +++++-----
optimsimplex-1.0-5/optimsimplex/R/optimsimplex.xbar.R | 2
optimsimplex-1.0-5/optimsimplex/R/print.optimsimplex.R |only
optimsimplex-1.0-5/optimsimplex/R/print.simplex.R |only
optimsimplex-1.0-5/optimsimplex/R/print.vertex.R |only
optimsimplex-1.0-5/optimsimplex/R/simplex.R |only
optimsimplex-1.0-5/optimsimplex/R/vertex.R |only
optimsimplex-1.0-5/optimsimplex/build |only
optimsimplex-1.0-5/optimsimplex/inst/doc/optimsimplex_manual.R |only
optimsimplex-1.0-5/optimsimplex/inst/doc/optimsimplex_manual.Rnw |only
optimsimplex-1.0-5/optimsimplex/inst/doc/optimsimplex_manual.pdf |only
optimsimplex-1.0-5/optimsimplex/man/optimsimplex-package.Rd | 5 -
optimsimplex-1.0-5/optimsimplex/man/optimsimplex.Rd |only
optimsimplex-1.0-5/optimsimplex/man/optimsimplex.computefv.Rd | 2
optimsimplex-1.0-5/optimsimplex/man/optimsimplex.destroy.Rd | 2
optimsimplex-1.0-5/optimsimplex/man/optimsimplex.getall.Rd | 6 -
optimsimplex-1.0-5/optimsimplex/man/optimsimplex.gradientfv.Rd | 2
optimsimplex-1.0-5/optimsimplex/man/optimsimplex.log.Rd | 2
optimsimplex-1.0-5/optimsimplex/man/optimsimplex.reflect.Rd | 2
optimsimplex-1.0-5/optimsimplex/man/optimsimplex.setall.Rd | 2
optimsimplex-1.0-5/optimsimplex/man/optimsimplex.shrink.Rd | 2
optimsimplex-1.0-5/optimsimplex/man/optimsimplex.utils.Rd | 2
optimsimplex-1.0-5/optimsimplex/man/simplex.Rd |only
optimsimplex-1.0-5/optimsimplex/vignettes |only
92 files changed, 95 insertions(+), 79 deletions(-)
Title: R port of the Scilab optimbase module
Diff between optimbase versions 1.0-7 dated 2011-03-31 and 1.0-8 dated 2014-02-02
Description: Provides a set of commands to manage an abstract
optimization method. The goal is to provide a building block
for a large class of specialized optimization methods. This
package manages: the number of variables, the minimum and
maximum bounds, the number of non linear inequality
constraints, the cost function, the logging system, various
termination criteria, etc...
Author: Sebastien Bihorel, Michael Baudin (author of the original
module)
Maintainer: Sebastien Bihorel
optimbase-1.0-7/optimbase/.project |only
optimbase-1.0-7/optimbase/R/assert.typeboolean.R |only
optimbase-1.0-7/optimbase/R/assert.typefunction.R |only
optimbase-1.0-7/optimbase/R/assert.typereal.R |only
optimbase-1.0-7/optimbase/R/assert.typestring.R |only
optimbase-1.0-7/optimbase/R/optimbase.new.R |only
optimbase-1.0-7/optimbase/R/optimtypeof.R |only
optimbase-1.0-7/optimbase/inst/doc/Rd2latex.sh |only
optimbase-1.0-7/optimbase/inst/doc/asserts.tex |only
optimbase-1.0-7/optimbase/inst/doc/ones.tex |only
optimbase-1.0-7/optimbase/inst/doc/optimbase-package.tex |only
optimbase-1.0-7/optimbase/inst/doc/optimbase.Rnw |only
optimbase-1.0-7/optimbase/inst/doc/optimbase.checkbounds.tex |only
optimbase-1.0-7/optimbase/inst/doc/optimbase.checkcostfun.tex |only
optimbase-1.0-7/optimbase/inst/doc/optimbase.checkshape.tex |only
optimbase-1.0-7/optimbase/inst/doc/optimbase.checkx0.tex |only
optimbase-1.0-7/optimbase/inst/doc/optimbase.configure.tex |only
optimbase-1.0-7/optimbase/inst/doc/optimbase.destroy.tex |only
optimbase-1.0-7/optimbase/inst/doc/optimbase.function.tex |only
optimbase-1.0-7/optimbase/inst/doc/optimbase.get.tex |only
optimbase-1.0-7/optimbase/inst/doc/optimbase.gridsearch.tex |only
optimbase-1.0-7/optimbase/inst/doc/optimbase.hasbounds.tex |only
optimbase-1.0-7/optimbase/inst/doc/optimbase.incriter.tex |only
optimbase-1.0-7/optimbase/inst/doc/optimbase.isfeasible.tex |only
optimbase-1.0-7/optimbase/inst/doc/optimbase.isinbounds.tex |only
optimbase-1.0-7/optimbase/inst/doc/optimbase.log.tex |only
optimbase-1.0-7/optimbase/inst/doc/optimbase.new.tex |only
optimbase-1.0-7/optimbase/inst/doc/optimbase.outputcmd.tex |only
optimbase-1.0-7/optimbase/inst/doc/optimbase.outstruct.tex |only
optimbase-1.0-7/optimbase/inst/doc/optimbase.pdf |only
optimbase-1.0-7/optimbase/inst/doc/optimbase.proj2bnds.tex |only
optimbase-1.0-7/optimbase/inst/doc/optimbase.terminate.tex |only
optimbase-1.0-7/optimbase/inst/doc/optimtypeof.tex |only
optimbase-1.0-7/optimbase/inst/doc/size.tex |only
optimbase-1.0-7/optimbase/inst/doc/strvec.tex |only
optimbase-1.0-7/optimbase/inst/doc/transpose.tex |only
optimbase-1.0-7/optimbase/inst/doc/vec2matrix.tex |only
optimbase-1.0-7/optimbase/man/optimbase.new.Rd |only
optimbase-1.0-7/optimbase/man/optimtypeof.Rd |only
optimbase-1.0-8/optimbase/Changelog | 27 +
optimbase-1.0-8/optimbase/DESCRIPTION | 11
optimbase-1.0-8/optimbase/MD5 |only
optimbase-1.0-8/optimbase/NAMESPACE |only
optimbase-1.0-8/optimbase/R/as.R |only
optimbase-1.0-8/optimbase/R/assert.classboolean.R |only
optimbase-1.0-8/optimbase/R/assert.classfunction.R |only
optimbase-1.0-8/optimbase/R/assert.classinteger.R |only
optimbase-1.0-8/optimbase/R/assert.classreal.R |only
optimbase-1.0-8/optimbase/R/assert.classstring.R |only
optimbase-1.0-8/optimbase/R/is.R |only
optimbase-1.0-8/optimbase/R/ones.R | 2
optimbase-1.0-8/optimbase/R/optimbase.R |only
optimbase-1.0-8/optimbase/R/optimbase.cget.R | 2
optimbase-1.0-8/optimbase/R/optimbase.checkbounds.R | 2
optimbase-1.0-8/optimbase/R/optimbase.checkcostfun.R | 173 ++++------
optimbase-1.0-8/optimbase/R/optimbase.checkshape.R | 2
optimbase-1.0-8/optimbase/R/optimbase.checkx0.R | 2
optimbase-1.0-8/optimbase/R/optimbase.configure.R | 54 +--
optimbase-1.0-8/optimbase/R/optimbase.destroy.R | 2
optimbase-1.0-8/optimbase/R/optimbase.function.R | 16
optimbase-1.0-8/optimbase/R/optimbase.get.R | 2
optimbase-1.0-8/optimbase/R/optimbase.gridsearch.R | 4
optimbase-1.0-8/optimbase/R/optimbase.hasbounds.R | 2
optimbase-1.0-8/optimbase/R/optimbase.hasconstraints.R | 2
optimbase-1.0-8/optimbase/R/optimbase.hasnlcons.R | 2
optimbase-1.0-8/optimbase/R/optimbase.histget.R | 2
optimbase-1.0-8/optimbase/R/optimbase.histset.R | 2
optimbase-1.0-8/optimbase/R/optimbase.incriter.R | 2
optimbase-1.0-8/optimbase/R/optimbase.isfeasible.R | 2
optimbase-1.0-8/optimbase/R/optimbase.isinbounds.R | 2
optimbase-1.0-8/optimbase/R/optimbase.isinnonlincons.R | 2
optimbase-1.0-8/optimbase/R/optimbase.log.R | 4
optimbase-1.0-8/optimbase/R/optimbase.logshutdown.R | 2
optimbase-1.0-8/optimbase/R/optimbase.logstartup.R | 2
optimbase-1.0-8/optimbase/R/optimbase.outputcmd.R | 6
optimbase-1.0-8/optimbase/R/optimbase.outstruct.R | 4
optimbase-1.0-8/optimbase/R/optimbase.proj2bnds.R | 2
optimbase-1.0-8/optimbase/R/optimbase.set.R | 2
optimbase-1.0-8/optimbase/R/optimbase.stoplog.R | 6
optimbase-1.0-8/optimbase/R/optimbase.terminate.R | 14
optimbase-1.0-8/optimbase/R/print.optimbase.R |only
optimbase-1.0-8/optimbase/R/size.R | 2
optimbase-1.0-8/optimbase/R/strvec.R | 2
optimbase-1.0-8/optimbase/R/summary.optimbase.R |only
optimbase-1.0-8/optimbase/R/transpose.R | 2
optimbase-1.0-8/optimbase/R/unknownValueForOption.R | 2
optimbase-1.0-8/optimbase/R/vec2matrix.R | 2
optimbase-1.0-8/optimbase/build |only
optimbase-1.0-8/optimbase/inst/doc/optimbase_manual.R |only
optimbase-1.0-8/optimbase/inst/doc/optimbase_manual.Rnw |only
optimbase-1.0-8/optimbase/inst/doc/optimbase_manual.pdf |only
optimbase-1.0-8/optimbase/man/asserts.Rd | 29 -
optimbase-1.0-8/optimbase/man/optimbase-package.Rd | 5
optimbase-1.0-8/optimbase/man/optimbase.Rd |only
optimbase-1.0-8/optimbase/man/optimbase.configure.Rd | 2
optimbase-1.0-8/optimbase/man/optimbase.get.Rd | 2
optimbase-1.0-8/optimbase/man/optimbase.gridsearch.Rd | 7
optimbase-1.0-8/optimbase/man/optimbase.outputcmd.Rd | 2
optimbase-1.0-8/optimbase/man/optimbase.outstruct.Rd | 4
optimbase-1.0-8/optimbase/vignettes |only
100 files changed, 231 insertions(+), 189 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-02-26 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-11-14 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-12-21 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-07-24 2.1-2
2009-05-05 1.1-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-01-31 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-10-09 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-03-05 0.1-4
2010-03-01 0.1-3
2009-11-23 0.1-2
2009-10-04 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-06-25 1.0-2
2012-04-15 1.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-07-21 1.0
Title: Tools for simulating and plotting quantities of interest
estimated from Cox Proportional Hazards models
Diff between simPH versions 0.8.5 dated 2013-11-15 and 1.0 dated 2014-02-02
Description: The package simulates and plots quantities of interest (relative
hazards, first differences, and hazard ratios) for linear coefficients,
multiplicative interactions, polynomials, penalised splines, and
non-proportional hazards, as well as stratified survival curves from Cox
Proportional Hazard models. It also simulates and plots marginal effects
for multiplicative interactions.
Author: Christopher Gandrud
Maintainer: Christopher Gandrud
DESCRIPTION | 25 +++-----
MD5 | 67 ++++++++++++-----------
NAMESPACE | 7 +-
NEWS | 14 ++++
R/IntervalConstrict.R | 38 +++++++++++--
R/MinMaxLines.R | 33 +++++++++++
R/SmoothSim.R |only
R/coxsimInteract.R | 100 +++++++++++++++++++++--------------
R/coxsimLinear.R | 86 +++++++++++++++++++-----------
R/coxsimPoly.R | 53 ++++++++++--------
R/coxsimSpline.R | 86 ++++++++++++++++--------------
R/coxsimtvc.R | 56 ++++++++++---------
R/ggfitStrata.R | 2
R/simGG.siminteract.R | 133 ++++++++++++++++++++++++++++++++++++++++-------
R/simGG.simlinear.R | 125 ++++++++++++++++++++++++++++++++++----------
R/simGG.simpoly.R | 112 +++++++++++++++++++++++++++++++--------
R/simGG.simspline.R | 122 +++++++++++++++++++++++++++++++++----------
R/simGG.simtvc.R | 110 +++++++++++++++++++++++++++++++++-----
R/simPH.R |only
README.md | 14 ++--
man/CarpenterFdaData.Rd | 16 ++---
man/GolubEUPData.Rd | 15 ++---
man/coxsimInteract.Rd | 89 ++++++++++++++++---------------
man/coxsimLinear.Rd | 74 +++++++++++++-------------
man/coxsimPoly.Rd | 95 +++++++++++++++++----------------
man/coxsimSpline.Rd | 123 +++++++++++++++++++++----------------------
man/coxsimtvc.Rd | 126 ++++++++++++++++++++++----------------------
man/ggfitStrata.Rd | 35 ++++++------
man/simGG.Rd | 12 +---
man/simGG.siminteract.Rd | 115 +++++++++++++++++++++-------------------
man/simGG.simlinear.Rd | 128 ++++++++++++++++++++++++---------------------
man/simGG.simpoly.Rd | 82 ++++++++++++++++------------
man/simGG.simspline.Rd | 115 +++++++++++++++++++++++-----------------
man/simGG.simtvc.Rd | 81 +++++++++++++++-------------
man/simPH.Rd |only
man/tvc.Rd | 20 +++----
36 files changed, 1447 insertions(+), 862 deletions(-)
Title: Phylogenetic analysis in R
Diff between phangorn versions 1.99-5 dated 2013-11-28 and 1.99-7 dated 2014-02-02
Description: Phylogenetic analysis in R (Estimation of phylogenetic
trees and networks using Maximum Likelihood, Maximum Parsimony,
Distance methods & Hadamard conjugation)
Author: Klaus Schliep, Emmanuel Paradis
Maintainer: Klaus Schliep
DESCRIPTION | 13 -
MD5 | 56 ++++----
NAMESPACE | 8 -
NEWS | 22 +++
R/Coalescent.R | 36 +++++
R/cladePar.R |only
R/fitch.R | 12 -
R/networx.R | 186 +++++++++++++++++++++------
R/parsimony.R | 65 ++-------
R/phylo.R | 277 +++++++++++------------------------------
R/treeManipulation.R | 95 +++-----------
R/treedist.R |only
R/zzz.R | 2
build |only
inst/doc/Ancestral.R |only
inst/doc/Ancestral.Rnw |only
inst/doc/Trees.R |only
inst/doc/Trees.Rnw |only
inst/doc/phangorn-specials.R |only
inst/doc/phangorn-specials.Rnw |only
man/as.splits.Rd | 11 +
man/bootstrap.pml.Rd | 4
man/cladePar.Rd |only
man/densiTree.Rd | 2
man/dist.hamming.Rd | 95 +++++++-------
man/hadamard.Rd | 166 +++++++++++-------------
man/parsimony.Rd | 8 -
man/pml.Rd | 2
man/treedist.Rd | 19 +-
src/fitch.c | 158 -----------------------
src/init.c | 23 ++-
src/ml.c | 144 ++++++++++++++++++++-
src/phangorn.c | 23 ++-
src/sankoff.c | 5
34 files changed, 714 insertions(+), 718 deletions(-)
Title: Times and Dates from S-PLUS
Diff between splusTimeDate versions 2.0.0-116 dated 2014-01-30 and 2.0.0-117 dated 2014-02-02
Description: Classes and methods for times and dates (ported from S-PLUS)
Author: TIBCO Software Inc.
Maintainer: Stephen Kaluzny
DESCRIPTION | 6 +++---
MD5 | 4 ++--
R/groupVecMethods.R | 18 ++++++++++--------
3 files changed, 15 insertions(+), 13 deletions(-)
Title: Generalized Regression on Orthogonal Components
Diff between groc versions 1.0 dated 2014-02-01 and 1.0.1 dated 2014-02-02
Description: Robust multiple or multivariate linear regression, nonparametric regression on orthogonal components, classical or robust partial least squares models
Author: M. Bilodeau and P. Lafaye de Micheaux
Maintainer: P. Lafaye de Micheaux
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
inst/HISTORY | 10 +++++++++-
src/dcov.cpp | 2 +-
src/gridalgo.cpp | 2 +-
5 files changed, 19 insertions(+), 11 deletions(-)