Title: Project MOSAIC (mosaic-web.org) statistics and mathematics
teaching utilities
Diff between mosaic versions 0.8-10 dated 2014-01-16 and 0.8-18 dated 2014-03-01
Description: Data sets and utilities from Project MOSAIC (mosaic-web.org) used
to teach mathematics, statistics, computation and modeling. Funded by the
NSF, Project MOSAIC is a community of educators working to tie together
aspects of quantitative work that students in science, technology,
engineering and mathematics will need in their professional lives, but
which are usually taught in isolation, if at all.
Author: Randall Pruim
Maintainer: Randall Pruim
DESCRIPTION | 12 -
MD5 | 314 +++++++++++++++++++++---------------------
NAMESPACE | 60 ++++----
R/Tukey.R | 2
R/aggregatingAux.R | 3
R/as.xtabs.R | 2
R/bargraph.R | 19 ++
R/binom.test.R | 42 ++---
R/cdist.R |only
R/confint.R | 11 -
R/datasets.R | 48 +++++-
R/deltaMethod.R |only
R/do.R | 109 ++++++++++++--
R/evalFormula.R | 2
R/findZeros.R | 1
R/fitModel.R | 3
R/interval.R | 5
R/makeFun.R | 21 +-
R/mm.R | 13 -
R/numD.R | 4
R/oddsRatio.R | 2
R/parseFormula.R | 8 -
R/plotCumfreq.R | 2
R/plotFun.R | 8 -
R/project.R | 16 +-
R/prop.test.R | 30 ++--
R/resample.R | 6
R/tally.R | 13 -
R/ttest.R | 2
R/xqqmath.R | 4
data/HeatX.rda |only
inst/NEWS.Rd | 23 ++-
inst/doc/mosaic-resources.pdf |binary
inst/tests/test-aggregating.R | 12 +
inst/tests/test-tabulation.R | 49 +++---
man/Alcohol.Rd | 15 +-
man/Births78.Rd | 8 -
man/Broyden.Rd | 10 -
man/CIsim.Rd | 33 ++--
man/CPS85.Rd | 29 ++-
man/Calculus.Rd | 78 ++++------
man/Cards.Rd | 13 +
man/CoolingWater.Rd | 19 +-
man/Countries.Rd | 24 +--
man/FunctionsFromData.Rd | 47 ++----
man/Galton.Rd | 29 ++-
man/Gestation.Rd | 28 ++-
man/HELP.Rd | 61 +++-----
man/HELPfull.Rd | 61 +++-----
man/HELPmiss.Rd | 66 ++++----
man/HELPrct.Rd | 73 ++++-----
man/HeatX.Rd |only
man/Heightweight.Rd | 24 +--
man/KidsFeet.Rd | 26 +--
man/Marriage.Rd | 15 +-
man/Mites.Rd | 22 +-
man/RailTrail.Rd | 29 +--
man/SAT.Rd | 16 +-
man/SnowGR.Rd | 12 -
man/SwimRecords.Rd | 7
man/TenMileRace.Rd | 13 +
man/TukeyHSD.lm.Rd | 14 -
man/Utilities.Rd | 14 +
man/Utilities2.Rd | 13 +
man/Whickham.Rd | 32 ++--
man/adapt_seq.Rd | 20 +-
man/aggregating.Rd | 42 ++---
man/aggregatingAux.Rd | 15 --
man/aggregatingFunction1.Rd | 11 -
man/aggregatingFunction2.Rd | 9 -
man/as-xtabs.Rd | 20 +-
man/bargraph.Rd | 27 ++-
man/binom.test.Rd | 51 ++++--
man/cdist.Rd |only
man/coef.Rd | 15 --
man/columns.Rd | 10 -
man/compareMean.Rd | 12 -
man/compareProportion.Rd | 12 -
man/confint.Rd | 41 ++---
man/cross.Rd | 7
man/deg2rad.Rd | 12 -
man/deltaMethod.Rd |only
man/derivedFactor.Rd | 30 +---
man/dfapply.Rd | 11 -
man/do.Rd | 50 ++++--
man/dotPlot.Rd | 26 +--
man/ediff.Rd | 14 -
man/evalFormula.Rd | 10 -
man/evalSubFormula.Rd | 9 -
man/expandFun.Rd | 8 -
man/fav_stats.Rd | 15 --
man/fetchData.Rd | 65 +++-----
man/fetchGapminder.Rd | 9 -
man/fetchGoogle.Rd | 74 ++++-----
man/findZeros.Rd | 36 ++--
man/findZerosMult.Rd | 25 +--
man/fitModel.Rd | 38 ++---
man/fitSpline.Rd | 15 --
man/freqpolygon.Rd | 28 +--
man/getVarFormula.Rd | 6
man/googleMap.Rd | 18 +-
man/inferArgs.Rd | 23 +--
man/integrateODE.Rd | 27 +--
man/interval.Rd | 21 +-
man/is.wholenumber.Rd | 16 --
man/joinFrames.Rd | 10 -
man/ladd.Rd | 13 -
man/latlon2xyz.Rd | 17 --
man/linear.algebra.Rd | 30 +---
man/logical2factor.Rd | 18 +-
man/logit.Rd | 13 +
man/mPlot.Rd | 51 ++----
man/makeColorscheme.Rd | 9 -
man/makeFun.Rd | 36 +++-
man/mm.Rd | 54 +++----
man/modelVars.Rd | 7
man/mosaic-internal.Rd | 91 +++++-------
man/mosaic-package.Rd | 22 +-
man/mosaic.options.Rd | 26 +--
man/mosaicformula.Rd | 21 +-
man/ntiles.Rd | 5
man/numD.Rd | 85 ++++-------
man/oddsRatio.Rd | 34 ++--
man/panel.levelcontourplot.Rd | 17 +-
man/panel.lmbands.Rd | 13 -
man/panel.plotFun.Rd | 14 -
man/panel.plotFun1.Rd | 15 +-
man/parseFormula.Rd | 38 ++---
man/perctable.Rd | 19 +-
man/plotCumfreq.Rd | 19 +-
man/plotDist.Rd | 34 ++--
man/plotFun.Rd | 36 ++--
man/plotPoints.Rd | 12 -
man/pqrdata.Rd | 65 ++++----
man/project-methods.Rd | 54 ++++---
man/prop.Rd | 12 -
man/prop.test.Rd | 62 ++++++--
man/r.squared.Rd | 6
man/rand.Rd | 14 -
man/read.file.Rd | 35 ++--
man/repeater-class.Rd | 19 +-
man/resample.Rd | 38 ++---
man/rflip.Rd | 18 +-
man/rfun.Rd | 33 +---
man/rgeo-internals.Rd | 26 ++-
man/rgeo.Rd | 46 ++----
man/rkintegrate.Rd | 15 --
man/rsquared.Rd | 6
man/simplify.Rd | 50 ++----
man/sp2df.Rd | 5
man/statTally.Rd | 23 +--
man/surround.Rd | 7
man/symbolicD.Rd | 23 +--
man/symbolicInt.Rd | 60 +++-----
man/tally.Rd | 8 -
man/themes.Rd | 21 +-
man/ttest.Rd | 32 ++--
man/xchisq.test.Rd | 9 -
man/xhistogram.Rd | 54 +++----
man/xpnorm.Rd | 35 ++--
man/xqqmath.Rd | 16 +-
161 files changed, 2095 insertions(+), 2011 deletions(-)
Title: Various R programming tools
Diff between gtools versions 3.3.0 dated 2014-02-11 and 3.3.1 dated 2014-03-01
Description: Various R programming tools
Author: Gregory R. Warnes, Ben Bolker, and Thomas Lumley
Maintainer: Gregory R. Warnes
ChangeLog | 12 ++++++++++++
DESCRIPTION | 8 ++++----
MD5 | 13 +++++++------
NEWS | 12 ++++++++++++
R/mixedsort.R | 10 +++++-----
inst/ChangeLog | 12 ++++++++++++
inst/NEWS | 12 ++++++++++++
tests/test_mixedorder.R |only
8 files changed, 64 insertions(+), 15 deletions(-)
Title: Extraction of business financial information from XBRL
documents.
Diff between XBRL versions 0.99.10 dated 2013-12-31 and 0.99.11 dated 2014-03-01
Description:
XBRL is a package suited to extract business financial information from
an Extensible Business Reporting Language (XBRL) instance file and the
associated collection of files that defines its Discoverable Taxonomy
Set (DTS). These files are usually disseminated across different remote
locations.
XBRL documents employ many technologies defined by XML standards, such
as XML Schema, Namespaces, XLink, and XPath, which make the extraction
of information involved. The functions provided by this package
address this complexity, returning data frames containing the enclosed
information readily available to perform analyses.
XBRL has been successfully tested in analyzing 10-K and 10-Q
submissions from USA filing companies that are publicly available at
the EDGAR system of the Securities and Exchange Commission (SEC).
As published taxonomy files (such as
"http://xbrl.fasb.org/us-gaap/2013/elts/us-gaap-2013-01-31.xsd")
are immutable and are used by most filers, XBRL offers the option of
downloading them only the first time they are referred, keeping a
local cache copy that can be used from then on. This speeds-up the
process, specially on slow connections.
XBRL is not and does not aim to be (at least yet) a validating XBRL
processor.
XBRL is still a work in progress. As such, functions and produced data
frames may change structure in future versions until stabilization.
Author: Roberto Bertolusso and Marek Kimmel
Maintainer: Roberto Bertolusso
XBRL-0.99.10/XBRL/man/xbrlParse.Rd |only
XBRL-0.99.10/XBRL/src/Makevars |only
XBRL-0.99.11/XBRL/ChangeLog | 10 +++++
XBRL-0.99.11/XBRL/DESCRIPTION | 42 +++++++++++++------------
XBRL-0.99.11/XBRL/MD5 | 37 +++++++++++-----------
XBRL-0.99.11/XBRL/NAMESPACE | 1
XBRL-0.99.11/XBRL/R/XBRL.R | 30 ++++++++++-------
XBRL-0.99.11/XBRL/R/xbrlProcessArcs.R | 11 ------
XBRL-0.99.11/XBRL/R/xbrlProcessFootnotes.R | 8 ----
XBRL-0.99.11/XBRL/R/xbrlProcessLabels.R | 8 ----
XBRL-0.99.11/XBRL/R/xbrlProcessRoles.R | 10 -----
XBRL-0.99.11/XBRL/cleanup |only
XBRL-0.99.11/XBRL/configure |only
XBRL-0.99.11/XBRL/configure.in |only
XBRL-0.99.11/XBRL/man/XBRL-package.Rd | 40 +++++++++++------------
XBRL-0.99.11/XBRL/man/XBRL.Rd | 6 +--
XBRL-0.99.11/XBRL/man/low-level.Rd |only
XBRL-0.99.11/XBRL/src/Makevars.in |only
XBRL-0.99.11/XBRL/src/XBRL.h | 2 -
XBRL-0.99.11/XBRL/src/xbrlProcessArcs.cpp | 20 +++++++----
XBRL-0.99.11/XBRL/src/xbrlProcessFootnotes.cpp | 10 +++--
XBRL-0.99.11/XBRL/src/xbrlProcessLabels.cpp | 10 +++--
XBRL-0.99.11/XBRL/src/xbrlProcessRoles.cpp | 16 +++++----
23 files changed, 129 insertions(+), 132 deletions(-)
Title: Rcpp integration for the Eigen templated linear algebra library.
Diff between RcppEigen versions 0.3.2.0.2 dated 2014-01-26 and 0.3.2.0.3 dated 2014-03-01
Description: R and Eigen integration using Rcpp.
Eigen is a C++ template library for linear algebra: matrices,
vectors, numerical solvers and related algorithms. It supports dense
and sparse matrices on integer, floating point and complex numbers,
decompositions of such matrices, and solutions of linear systems. Its
performance on many algorithms is comparable with some of the best
implementations based on Lapack and level-3 BLAS.
The RcppEigen package includes the header files from the Eigen C++
template library (currently version 3.2.0). Thus users do not need to
install Eigen itself in order to use RcppEigen.
Since version 3.1.1, Eigen is licensed under the Mozilla Public License
(version 2); earlier version were licensed under the GNU LGPL version 3 or
later. RcppEigen (the Rcpp bindings/bridge to Eigen) is licensed under the
GNU GPL version 2 or later, as is the rest of Rcpp.
Author: Douglas Bates, Romain Francois and Dirk Eddelbuettel;
the authors of Eigen for the included version of Eigen
Maintainer: Dirk Eddelbuettel
RcppEigen-0.3.2.0.2/RcppEigen/inst/skeleton/rcppeigen_hello_world.R |only
RcppEigen-0.3.2.0.2/RcppEigen/inst/skeleton/rcppeigen_hello_world.h |only
RcppEigen-0.3.2.0.3/RcppEigen/ChangeLog | 22 +
RcppEigen-0.3.2.0.3/RcppEigen/DESCRIPTION | 10
RcppEigen-0.3.2.0.3/RcppEigen/MD5 | 24 -
RcppEigen-0.3.2.0.3/RcppEigen/R/RcppEigen.package.skeleton.R | 192 ++++------
RcppEigen-0.3.2.0.3/RcppEigen/inst/NEWS.Rd | 12
RcppEigen-0.3.2.0.3/RcppEigen/inst/doc/RcppEigen-Introduction.pdf |binary
RcppEigen-0.3.2.0.3/RcppEigen/inst/skeleton/Makevars | 9
RcppEigen-0.3.2.0.3/RcppEigen/inst/skeleton/Makevars.win | 10
RcppEigen-0.3.2.0.3/RcppEigen/inst/skeleton/rcppeigen_hello_world.cpp | 57 ++
RcppEigen-0.3.2.0.3/RcppEigen/man/RcppEigen.package.skeleton.Rd | 75 +--
RcppEigen-0.3.2.0.3/RcppEigen/src/Makevars | 10
RcppEigen-0.3.2.0.3/RcppEigen/src/Makevars.win | 18
14 files changed, 256 insertions(+), 183 deletions(-)
Title: Monte Carlo Local Likelihood Estimation
Diff between mcll versions 1.1 dated 2013-02-05 and 1.2 dated 2014-03-01
Description: Maximum likelihood estimation using a Monte Carlo local likelihood (MCLL) method
Author: Minjeong Jeon, Cari Kaufman, and Sophia Rabe-Hesketh
Maintainer: Minjeong Jeon
mcll-1.1/mcll/inst |only
mcll-1.2/mcll/DESCRIPTION | 20 +++++++++-----------
mcll-1.2/mcll/MD5 | 18 ++++++++----------
mcll-1.2/mcll/NAMESPACE | 4 +---
mcll-1.2/mcll/data/salamander.txt.gz |binary
mcll-1.2/mcll/data/samp.txt.gz |binary
mcll-1.2/mcll/man/mcll-package.Rd | 15 +++++++--------
mcll-1.2/mcll/man/mcll_est.Rd | 9 +++------
mcll-1.2/mcll/man/mcll_se.Rd | 6 +++---
mcll-1.2/mcll/man/samp.Rd | 2 +-
10 files changed, 32 insertions(+), 42 deletions(-)
Title: Additive and multiplicative effects modeling of networks and
relational data
Diff between amen versions 0.975 dated 2013-04-11 and 0.999 dated 2014-03-01
Description: This package computes Bayesian estimates for additive and
multiplicative effects (AME) models for networks and relational
data. The basic model includes regression terms, the covariance
structure of the social relations model (Warner, Kenny and
Stoto (1979), Wong (1982)), and multiplicative factor effects
(Hoff(2009)). Four different link functions accommodate
different relational data structures, including binary/network
data (bin), normal relational data (nrm), ordinal relational
data (ord) and data from fixed-rank nomination schemes (frn).
Several of these link functions are discussed in Hoff, Fosdick,
Volfovsky and Stovel (2013). Development of this software was
supported in part by NICHD grant R01HD067509-01A1.
Author: Peter Hoff, Bailey Fosdick, Alex Volfovsky, Kate Stovel
Maintainer: Peter D. Hoff
amen-0.975/amen/R/ame_bin.R |only
amen-0.975/amen/R/ame_cbin.R |only
amen-0.975/amen/R/ame_frn.R |only
amen-0.975/amen/R/ame_nrm.R |only
amen-0.975/amen/R/ame_ord.R |only
amen-0.975/amen/R/ame_rrl.R |only
amen-0.975/amen/R/lfcplot.R |only
amen-0.975/amen/R/probit_start.R |only
amen-0.975/amen/R/t_degree.R |only
amen-0.975/amen/R/t_recip.R |only
amen-0.975/amen/R/t_trans.R |only
amen-0.975/amen/man/ame_bin.Rd |only
amen-0.975/amen/man/ame_cbin.Rd |only
amen-0.975/amen/man/ame_frn.Rd |only
amen-0.975/amen/man/ame_nrm.Rd |only
amen-0.975/amen/man/ame_ord.Rd |only
amen-0.975/amen/man/ame_rrl.Rd |only
amen-0.975/amen/man/lfcplot.Rd |only
amen-0.975/amen/man/probit_start.Rd |only
amen-0.975/amen/man/t_degree.Rd |only
amen-0.975/amen/man/t_recip.Rd |only
amen-0.975/amen/man/t_trans.Rd |only
amen-0.999/amen/DESCRIPTION | 11 ++--
amen-0.999/amen/MD5 | 92 +++++++++++++++--------------------
amen-0.999/amen/R/ame.R |only
amen-0.999/amen/R/design_array.R |only
amen-0.999/amen/R/gofstats.R |only
amen-0.999/amen/R/plot.ame.R | 46 ++++++++---------
amen-0.999/amen/R/rZ_nrm_fc.R |only
amen-0.999/amen/R/rZ_ord_fc.R | 53 ++++++++++----------
amen-0.999/amen/R/raSab_cbin_fc.R | 46 ++++++++---------
amen-0.999/amen/R/raSab_frn_fc.R | 32 ++++++------
amen-0.999/amen/R/simY_ord.R | 28 ++++++----
amen-0.999/amen/R/zscores.R |only
amen-0.999/amen/data/YX_bin.rda |binary
amen-0.999/amen/data/YX_cbin.rda |only
amen-0.999/amen/data/YX_frn.rda |binary
amen-0.999/amen/data/YX_nrm.rda |binary
amen-0.999/amen/data/YX_ord.rda |binary
amen-0.999/amen/data/YX_rrl.rda |only
amen-0.999/amen/man/YX_bin.Rd | 2
amen-0.999/amen/man/YX_cbin.Rd |only
amen-0.999/amen/man/YX_frn.Rd | 2
amen-0.999/amen/man/YX_nrm.Rd | 3 -
amen-0.999/amen/man/YX_ord.Rd | 8 +--
amen-0.999/amen/man/YX_rrl.Rd |only
amen-0.999/amen/man/ame.Rd |only
amen-0.999/amen/man/amen-package.Rd | 8 +--
amen-0.999/amen/man/design_array.Rd |only
amen-0.999/amen/man/gofstats.Rd |only
amen-0.999/amen/man/plot.ame.Rd | 64 +++++++++++-------------
amen-0.999/amen/man/rZ_cbin_fc.Rd | 4 -
amen-0.999/amen/man/rZ_frn_fc.Rd | 2
amen-0.999/amen/man/rZ_nrm_fc.Rd |only
amen-0.999/amen/man/rZ_ord_fc.Rd | 35 ++++++++-----
amen-0.999/amen/man/rZ_rrl_fc.Rd | 4 -
amen-0.999/amen/man/raSab_bin_fc.Rd | 13 +++-
amen-0.999/amen/man/raSab_cbin_fc.Rd | 51 +++++++++----------
amen-0.999/amen/man/raSab_frn_fc.Rd | 19 ++++---
amen-0.999/amen/man/rbeta_ab_fc.Rd | 2
amen-0.999/amen/man/simY_frn.Rd | 2
amen-0.999/amen/man/simY_nrm.Rd | 2
amen-0.999/amen/man/simY_ord.Rd | 26 ++++-----
amen-0.999/amen/man/simY_rrl.Rd | 2
amen-0.999/amen/man/zscores.Rd |only
65 files changed, 282 insertions(+), 275 deletions(-)
Title: Gaussian, Poisson, and Binomial Hierarchical Modeling
Diff between Rgbp versions 1.0.4 dated 2014-01-20 and 1.0.5 dated 2014-03-01
Description: Rgbp is an R package that utilizes approximate Bayesian machinery to provide a method of estimating two-level hierarchical models for Gaussian, Poisson, and Binomial data in a fast and computationally efficient manner. The main products of this package are point and interval estimates for the true parameters, whose good frequency properties can be validated via its repeated sampling procedure called frequency method checking. It is found that such Bayesian-frequentist reconciliation allows Rgbp to have attributes desirable both sides of the aisle, working well in small samples and yielding good coverage probabilities for its interval estimates.
Author: Joseph Kelly, Hyungsuk Tak, and Carl Morris
Maintainer: Joseph Kelly
DESCRIPTION | 8 ++---
MD5 | 22 +++++++-------
R/coverage.R | 71 +++++++++++++++++++++++++++++------------------
R/gbp.R | 3 -
R/gr.R | 7 +++-
man/Rgbp-package.Rd | 32 ---------------------
man/coverage.Rd | 38 -------------------------
man/gbp.default.Rd | 46 ------------------------------
man/plot.gbp.Rd | 2 -
man/print.gbp.Rd | 2 -
man/print.summary.gbp.Rd | 2 -
man/summary.gbp.Rd | 2 -
12 files changed, 69 insertions(+), 166 deletions(-)
Title: An R implementation of dynamic simulations of autoregressive
relationships
Diff between dynsim versions 0.2.2 dated 2014-01-04 and 0.2.3 dated 2014-03-01
Description: An R implementation of dynamic simulations of autoregressive
relationships
Author: Christopher Gandrud, Guy D Whitten, and Laron K Williams
Maintainer: Christopher Gandrud
DESCRIPTION | 12 ++++++------
MD5 | 8 ++++----
NEWS | 6 ++++++
R/dynsim.R | 7 +------
README.md | 28 +++++++++++++++++++++++-----
5 files changed, 40 insertions(+), 21 deletions(-)
Title: Interface methods to use with an ActiveQuant Master Server
Diff between aqr versions 0.2 dated 2012-12-13 and 0.4 dated 2014-03-01
Description: This R extension provides methods to use a standalone ActiveQuant
Master Server from within R. Currently available features include fetching
and storing historical data, receiving and sending live data. Several
utility methods for simple data transformations are included, too. For
support requests, please join the mailing list at
https://r-forge.r-project.org/mail/?group_id=1518
Author: Ulrich Staudinger, ActiveQuant GmbH
Maintainer: Ulrich Staudinger
aqr-0.2/aqr/informalTests |only
aqr-0.2/aqr/man/aqdowstats.Rd |only
aqr-0.2/aqr/man/aqhourlystats.Rd |only
aqr-0.4/aqr/DESCRIPTION | 29 +--
aqr-0.4/aqr/MD5 | 49 +++--
aqr-0.4/aqr/NAMESPACE | 3
aqr-0.4/aqr/R/aq_config.R | 39 ++--
aqr-0.4/aqr/R/hist_data.R | 285 +++++++++++++++++++++++-----------
aqr-0.4/aqr/R/messaging.R | 90 +++++-----
aqr-0.4/aqr/R/utils.R | 111 ++++++++++++-
aqr-0.4/aqr/man/approximateSLTP.Rd |only
aqr-0.4/aqr/man/aqDayOfWeekStat.Rd |only
aqr-0.4/aqr/man/aqHourlyStat.Rd |only
aqr-0.4/aqr/man/aqLoadXtsFromCsv.Rd |only
aqr-0.4/aqr/man/aqLoadYahooEOD.Rd |only
aqr-0.4/aqr/man/aqSaveXtsToCsv.Rd |only
aqr-0.4/aqr/man/aqdrophour.Rd | 45 ++---
aqr-0.4/aqr/man/aqdrophours.Rd | 41 ++--
aqr-0.4/aqr/man/aqfilterohlcsd.Rd | 36 ++--
aqr-0.4/aqr/man/aqhourindex.Rd | 30 ++-
aqr-0.4/aqr/man/aqinit.Rd | 43 ++---
aqr-0.4/aqr/man/aqloadohlc.Rd | 68 +++-----
aqr-0.4/aqr/man/aqloadseriesfield.Rd | 52 +++---
aqr-0.4/aqr/man/aqpoll.Rd | 12 -
aqr-0.4/aqr/man/aqstorematrix.Rd | 49 ++---
aqr-0.4/aqr/man/aqstoreseriesfield.Rd | 61 +++----
aqr-0.4/aqr/man/buildarchiveurl.Rd | 50 +++--
aqr-0.4/aqr/man/generatePnlCurve.Rd |only
aqr-0.4/aqr/man/oneMonthAgo.Rd |only
aqr-0.4/aqr/man/today.Rd |only
aqr-0.4/aqr/src/am.c | 14 +
aqr-0.4/aqr/src/generatePnlSeries.c |only
32 files changed, 664 insertions(+), 443 deletions(-)
Title: Another Multidimensional Analysis Package
Diff between amap versions 0.8-11 dated 2014-02-26 and 0.8-12 dated 2014-03-01
Description: Tools for Clustering and Principal Component Analysis
(With robust methods, and parallelized functions).
Author: Antoine Lucas
Maintainer: Antoine Lucas
amap-0.8-11/amap/inst/po/po |only
amap-0.8-12/amap/Changes | 3
amap-0.8-12/amap/DESCRIPTION | 10
amap-0.8-12/amap/INDEX |only
amap-0.8-12/amap/MD5 | 19
amap-0.8-12/amap/inst/doc/amap.pdf |binary
amap-0.8-12/amap/src/distance.cpp | 2
amap-0.8-12/amap/src/distance_T.cpp | 213 +++++-----
amap-0.8-12/amap/src/distance_T.h | 700 +++++++++++++++++-------------------
amap-0.8-12/amap/src/hclust_T.cpp | 4
amap-0.8-12/amap/src/kmeans.cpp | 118 +++---
amap-0.8-12/amap/src/matrice.h |only
12 files changed, 533 insertions(+), 536 deletions(-)
Title: Tools for simulating and plotting quantities of interest
estimated from Cox Proportional Hazards models
Diff between simPH versions 1.0 dated 2014-02-02 and 1.1 dated 2014-03-01
Description: The package simulates and plots quantities of interest (relative
hazards, first differences, and hazard ratios) for linear coefficients,
multiplicative interactions, polynomials, penalised splines, and
non-proportional hazards, as well as stratified survival curves from Cox
Proportional Hazard models. It also simulates and plots marginal effects
for multiplicative interactions.
Author: Christopher Gandrud
Maintainer: Christopher Gandrud
DESCRIPTION | 15 ++++-----
MD5 | 62 +++++++++++++++++++-------------------
NAMESPACE | 4 +-
NEWS | 10 ++++--
R/SurvExpand.R |only
R/coxsimInteract.R | 30 +++++++++---------
R/coxsimLinear.R | 9 +++--
R/coxsimPoly.R | 11 +++---
R/coxsimSpline.R | 38 +++++++++++------------
R/coxsimtvc.R | 27 +++++++++-------
R/ggfitStrata.R | 14 ++++----
R/simGG.siminteract.R | 37 +++++++++++-----------
R/simGG.simlinear.R | 12 +++----
R/simGG.simpoly.R | 9 +++--
R/simGG.simspline.R | 59 ++++++++++++++++++------------------
R/simGG.simtvc.R | 76 ++++++++++++++++++++++++-----------------------
R/simPH.R | 6 +++
R/tvc.R | 12 ++++++-
README.md | 4 +-
man/SurvExpand.Rd |only
man/coxsimInteract.Rd | 29 +++++++++--------
man/coxsimLinear.Rd | 9 +++--
man/coxsimPoly.Rd | 7 ++--
man/coxsimSpline.Rd | 37 +++++++++++-----------
man/coxsimtvc.Rd | 26 +++++++++-------
man/ggfitStrata.Rd | 13 ++++----
man/simGG.siminteract.Rd | 37 +++++++++++-----------
man/simGG.simlinear.Rd | 11 +++---
man/simGG.simpoly.Rd | 9 +++--
man/simGG.simspline.Rd | 59 ++++++++++++++++++------------------
man/simGG.simtvc.Rd | 76 ++++++++++++++++++++++++-----------------------
man/simPH.Rd | 9 +++++
man/tvc.Rd | 15 +++++++--
33 files changed, 423 insertions(+), 349 deletions(-)
Title: A suite of functions to flexibly read data from files
Diff between reader versions 1.0 dated 2013-09-21 and 1.0.1 dated 2014-03-01
Description: A set of functions to simplify reading data from files. The main function, reader(), should read most common R datafile types without needing any parameters except the filename. Other functions provide simple ways of handling file paths and extensions, and automatically detecting file format and structure.
Author: Nicholas Cooper
Maintainer: Nicholas Cooper
DESCRIPTION | 11 ++---
MD5 | 16 +++----
NAMESPACE | 4 +
R/reader.R | 100 +++++++++++++++++++++++++++++++++++--------------
man/get.delim.Rd | 4 -
man/parse.args.Rd | 17 +++++---
man/reader-internal.Rd | 1
man/reader-package.Rd | 12 +++--
man/reader.Rd | 4 +
9 files changed, 116 insertions(+), 53 deletions(-)
Title: A package for estimating age-specific survival from incomplete
capture-recapture/recovery data
Diff between BaSTA versions 1.9.2 dated 2014-01-24 and 1.9.3 dated 2014-03-01
Description: This package estimates survival and mortality with covariates from capture-recapture/recovery data in a Bayesian framework when many individuals are of unknown age. It includes tools for data checking, model diagnostics and outputs such as life-tables and plots.
Author: Fernando Colchero, Owen Jones, Maren Rebke
Maintainer: Fernando Colchero
DESCRIPTION | 8 ++++----
MD5 | 12 +++++++-----
R/basta.R | 3 +--
build |only
data/sim1.RData |binary
data/sim1Out.RData |binary
inst/doc/BaSTAoverview.R |only
man/BaSTA-package.Rd | 4 ++--
8 files changed, 14 insertions(+), 13 deletions(-)
Title: Rcpp integration for Armadillo templated linear algebra library
Diff between RcppArmadillo versions 0.4.000.4 dated 2014-02-20 and 0.4.100.0 dated 2014-03-01
Description: R and Armadillo integration using Rcpp
Armadillo is a templated C++ linear algebra library (by Conrad Sanderson)
that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
A delayed evaluation approach is employed (during compile time) to combine
several operations into one, and to reduce (or eliminate) the need for
temporaries. This is accomplished through recursive templates and template
meta-programming.
This library is useful if C++ has been decided as the language of choice
(due to speed and/or integration capabilities), rather than another language.
The RcppArmadillo package includes the header files from the templated
Armadillo library. Thus users do not need to install Armadillo itself in
order to use RcppArmadillo.
This Armadillo integration provides a nice illustration of the
capabilities of the Rcpp package for seamless R and C++ integration.
Armadillo is licensed under the MPL 2.0, while RcppArmadillo (the Rcpp
bindings/bridge to Armadillo) is licensed under the GNU GPL version 2
or later, as is the rest of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Dirk Eddelbuettel
ChangeLog | 19
DESCRIPTION | 8
MD5 | 110 +-
inst/NEWS.Rd | 16
inst/doc/RcppArmadillo-intro.pdf |binary
inst/doc/RcppArmadillo-unitTests.pdf |binary
inst/include/armadillo | 5
inst/include/armadillo_bits/BaseCube_bones.hpp | 30
inst/include/armadillo_bits/BaseCube_meat.hpp | 34
inst/include/armadillo_bits/Mat_meat.hpp | 4
inst/include/armadillo_bits/Op_bones.hpp | 4
inst/include/armadillo_bits/SizeCube_bones.hpp | 7
inst/include/armadillo_bits/SizeCube_meat.hpp | 44 +
inst/include/armadillo_bits/SizeMat_bones.hpp | 7
inst/include/armadillo_bits/SizeMat_meat.hpp | 44 +
inst/include/armadillo_bits/SpBase_bones.hpp | 34
inst/include/armadillo_bits/SpBase_meat.hpp | 34
inst/include/armadillo_bits/SpMat_bones.hpp | 9
inst/include/armadillo_bits/SpMat_meat.hpp | 551 ++++++-------
inst/include/armadillo_bits/SpSubview_bones.hpp | 2
inst/include/armadillo_bits/SpSubview_meat.hpp | 805 ++++++++++----------
inst/include/armadillo_bits/arma_ostream_bones.hpp | 7
inst/include/armadillo_bits/arma_ostream_meat.hpp | 138 ++-
inst/include/armadillo_bits/arma_version.hpp | 10
inst/include/armadillo_bits/arrayops_bones.hpp | 29
inst/include/armadillo_bits/arrayops_meat.hpp | 353 +++++---
inst/include/armadillo_bits/auxlib_meat.hpp | 2
inst/include/armadillo_bits/compiler_setup.hpp | 37
inst/include/armadillo_bits/diskio_meat.hpp | 55 +
inst/include/armadillo_bits/eglue_core_meat.hpp | 99 +-
inst/include/armadillo_bits/eop_core_meat.hpp | 97 +-
inst/include/armadillo_bits/field_bones.hpp | 48 +
inst/include/armadillo_bits/field_meat.hpp | 571 +++++++++++++-
inst/include/armadillo_bits/fn_dot.hpp | 28
inst/include/armadillo_bits/fn_eigs_gen.hpp | 14
inst/include/armadillo_bits/fn_eigs_sym.hpp | 14
inst/include/armadillo_bits/fn_n_unique.hpp | 10
inst/include/armadillo_bits/fn_norm.hpp | 210 -----
inst/include/armadillo_bits/fn_norm_sparse.hpp |only
inst/include/armadillo_bits/fn_normalise.hpp |only
inst/include/armadillo_bits/fn_size.hpp | 12
inst/include/armadillo_bits/fn_sort.hpp | 8
inst/include/armadillo_bits/fn_sort_index.hpp | 8
inst/include/armadillo_bits/forward_bones.hpp | 2
inst/include/armadillo_bits/memory.hpp | 2
inst/include/armadillo_bits/op_dot_bones.hpp | 14
inst/include/armadillo_bits/op_dot_meat.hpp | 28
inst/include/armadillo_bits/op_normalise_bones.hpp |only
inst/include/armadillo_bits/op_normalise_meat.hpp |only
inst/include/armadillo_bits/operator_ostream.hpp | 30
inst/include/armadillo_bits/sp_auxlib_bones.hpp | 25
inst/include/armadillo_bits/sp_auxlib_meat.hpp | 249 ++++--
inst/include/armadillo_bits/spglue_minus_meat.hpp | 46 -
inst/include/armadillo_bits/spglue_plus_meat.hpp | 38
inst/include/armadillo_bits/spop_misc_meat.hpp | 13
inst/include/armadillo_bits/subview_field_bones.hpp | 13
inst/include/armadillo_bits/subview_field_meat.hpp | 235 ++++-
inst/include/armadillo_bits/traits.hpp | 48 +
58 files changed, 2793 insertions(+), 1467 deletions(-)
Title: Creates Random Forest and Stochastic Gradient Boosting Models,
and applies them to GIS .img files to build detailed prediction
maps.
Diff between ModelMap versions 2.3.4 dated 2012-08-17 and 3.0.14 dated 2014-03-01
Description: This package will create sophisticated models of training data and validate the models with an independent test set, cross validation, or in the case of Random Forest Models, with Out Of Bag (OOB) predictions on the training data. It will create graphs and tables of the model validation results. It will apply these models to GIS .img files of predictors to create detailed prediction surfaces. It will handle large predictor files for map making, by reading in the .img files in chunks, and output to the .txt file the prediction for each data chunk, before reading the next chunk of data.
Author: Elizabeth Freeman, Tracey Frescino
Maintainer: Elizabeth Freeman
ModelMap-2.3.4/ModelMap/COPYRIGHTS |only
ModelMap-2.3.4/ModelMap/inst/external |only
ModelMap-3.0.14/ModelMap/DESCRIPTION | 24
ModelMap-3.0.14/ModelMap/MD5 | 78
ModelMap-3.0.14/ModelMap/NAMESPACE | 19
ModelMap-3.0.14/ModelMap/R/build.rastLUT.R | 17
ModelMap-3.0.14/ModelMap/R/get.test.R | 6
ModelMap-3.0.14/ModelMap/R/internal.R | 860 +++++-----
ModelMap-3.0.14/ModelMap/R/model.build.R | 92 -
ModelMap-3.0.14/ModelMap/R/model.diagnostics.R | 224 +-
ModelMap-3.0.14/ModelMap/R/model.importance.plot.R | 56
ModelMap-3.0.14/ModelMap/R/model.interaction.plot.R | 75
ModelMap-3.0.14/ModelMap/R/model.mapmake.R | 188 --
ModelMap-3.0.14/ModelMap/build |only
ModelMap-3.0.14/ModelMap/inst/CHANGELOG | 77
ModelMap-3.0.14/ModelMap/inst/COPYRIGHTS |only
ModelMap-3.0.14/ModelMap/inst/doc/VModelMap.R |only
ModelMap-3.0.14/ModelMap/inst/doc/VModelMap.Rnw | 373 ++--
ModelMap-3.0.14/ModelMap/inst/doc/VModelMap.pdf |binary
ModelMap-3.0.14/ModelMap/inst/extdata |only
ModelMap-3.0.14/ModelMap/man/ModelMap-package.Rd | 8
ModelMap-3.0.14/ModelMap/man/get.test.Rd | 2
ModelMap-3.0.14/ModelMap/man/internal.Rd | 4
ModelMap-3.0.14/ModelMap/man/model.build.Rd | 13
ModelMap-3.0.14/ModelMap/man/model.diagnostics.Rd | 71
ModelMap-3.0.14/ModelMap/man/model.importance.plot.Rd | 12
ModelMap-3.0.14/ModelMap/man/model.interaction.plot.Rd | 28
ModelMap-3.0.14/ModelMap/man/model.mapmake.Rd | 248 --
ModelMap-3.0.14/ModelMap/vignettes/VModelMap.Rnw | 373 ++--
ModelMap-3.0.14/ModelMap/vignettes/VModelMap.bib | 12
ModelMap-3.0.14/ModelMap/vignettes/VModelMapData_LUT.csv | 4
ModelMap-3.0.14/ModelMap/vignettes/VModelMapData_dem_ELEVM_250.img |binary
ModelMap-3.0.14/ModelMap/vignettes/VModelMapData_modis_STK2005097.img |binary
ModelMap-3.0.14/ModelMap/vignettes/VModelMapData_nlcd_NLCD01_250.img |binary
34 files changed, 1593 insertions(+), 1271 deletions(-)
Title: A smarter JSON encoder/decoder for R
Diff between jsonlite versions 0.9.3 dated 2014-01-02 and 0.9.4 dated 2014-03-01
Description: This package is a fork of the RJSONIO package by Duncan Temple
Lang. It builds on the same libjson c++ parser, but implements a smarter
mapping between R objects and JSON strings. The package vignette describes
the behavior in great detail. In addition to drop-in replacements for
fromJSON and toJSON, the package has functions to serialize objects. The
package also contains many unit tests to make verify that all edge cases
are encoded and decoded consistently for use with dynamic data in systems
and applications.
Author: Jeroen Ooms, Duncan Temple Lang, Jonathan Wallace
Maintainer: Jeroen Ooms
jsonlite-0.9.3/jsonlite/man/toJSON.Rd |only
jsonlite-0.9.4/jsonlite/DESCRIPTION | 28 -
jsonlite-0.9.4/jsonlite/MD5 | 56 +-
jsonlite-0.9.4/jsonlite/NAMESPACE | 3
jsonlite-0.9.4/jsonlite/NEWS | 9
jsonlite-0.9.4/jsonlite/R/as.scalar.R | 27 -
jsonlite-0.9.4/jsonlite/R/asJSON.ANY.R | 7
jsonlite-0.9.4/jsonlite/R/asJSON.array.R | 3
jsonlite-0.9.4/jsonlite/R/asJSON.character.R | 7
jsonlite-0.9.4/jsonlite/R/asJSON.scalar.R | 2
jsonlite-0.9.4/jsonlite/R/fromJSON.R | 16
jsonlite-0.9.4/jsonlite/R/prettify.R | 26 +
jsonlite-0.9.4/jsonlite/R/serializeJSON.R | 24 -
jsonlite-0.9.4/jsonlite/R/toJSON.R | 3
jsonlite-0.9.4/jsonlite/R/unbox.R |only
jsonlite-0.9.4/jsonlite/R/utf8conv.R |only
jsonlite-0.9.4/jsonlite/inst/doc/json-mapping.R | 35 +
jsonlite-0.9.4/jsonlite/inst/doc/json-mapping.Rnw | 190 +++++++---
jsonlite-0.9.4/jsonlite/inst/doc/json-mapping.pdf |binary
jsonlite-0.9.4/jsonlite/inst/tests/test-libjson-utf8.R | 54 +-
jsonlite-0.9.4/jsonlite/man/fromJSON.Rd |only
jsonlite-0.9.4/jsonlite/man/prettify.Rd | 20 -
jsonlite-0.9.4/jsonlite/man/serializeJSON.Rd | 35 -
jsonlite-0.9.4/jsonlite/man/toMongo.Rd | 18
jsonlite-0.9.4/jsonlite/man/unbox.Rd |only
jsonlite-0.9.4/jsonlite/man/validate.Rd | 6
jsonlite-0.9.4/jsonlite/src/Makevars.in | 4
jsonlite-0.9.4/jsonlite/src/Makevars.win | 5
jsonlite-0.9.4/jsonlite/src/rlibjson.c | 16
jsonlite-0.9.4/jsonlite/vignettes/json-mapping-concordance.tex |only
jsonlite-0.9.4/jsonlite/vignettes/json-mapping.Rnw | 190 +++++++---
jsonlite-0.9.4/jsonlite/vignettes/json-mapping.bib |only
jsonlite-0.9.4/jsonlite/vignettes/json-mapping.synctex.gz |only
33 files changed, 507 insertions(+), 277 deletions(-)