Tue, 04 Mar 2014

Package weights updated to version 0.80 with previous version 0.75 dated 2012-08-17

Title: Weighting and Weighted Statistics
Description: This package currently provides a variety of functions for producing simple weighted statistics, such as weighted Pearson's correlations, partial correlations, Chi-Squareds, histograms, and t-tests. Also now includes some software for quickly recoding survey data. Future versions of the package will be more closely integrated with anesrake and additional weighting tools and will provide the option to find weighting benchmarks and weight data using a variety of methodologies. NOTE: Weighted partial correlation calculations temporarily pulled to address a bug.
Author: Josh Pasek, with some assistance from Alex Tahk and some code modified from R-core; Additional contributions by Gene Culter and Marcus Schwemmle.
Maintainer: Josh Pasek

Diff between weights versions 0.75 dated 2012-08-17 and 0.80 dated 2014-03-04

 DESCRIPTION       |   25 +++++++------------------
 MD5               |   30 ++++++++++++++++++------------
 NAMESPACE         |    8 +++++++-
 R/na.levs.r       |only
 R/rd.r            |   19 ++++++++++++++++---
 R/wpct.r          |    1 -
 R/wtd.chi.sq.r    |    1 -
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 R/wtd.t.test.r    |   19 ++++++++++++++-----
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 19 files changed, 78 insertions(+), 52 deletions(-)

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Package RVAideMemoire updated to version 0.9-32 with previous version 0.9-31 dated 2014-01-26

Title: Diverse basic statistical and graphical functions
Description: This package contains diverse more or less complicated functions, written to simplify user's life: simplifications of existing functions, basic but not implemented tests, easy-to-use tools, bridges between functions of different packages... All functions are presented in the French book 'Aide-memoire de statistique appliquee a la biologie', written by the same author and available on CRAN.
Author: Maxime Hervé
Maintainer: Maxime Hervé

Diff between RVAideMemoire versions 0.9-31 dated 2014-01-26 and 0.9-32 dated 2014-03-04

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 RVAideMemoire-0.9-31/RVAideMemoire/man/inv.lsmeans.Rd           |only
 RVAideMemoire-0.9-32/RVAideMemoire/DESCRIPTION                  |    8 +--
 RVAideMemoire-0.9-32/RVAideMemoire/MD5                          |   26 ++++------
 RVAideMemoire-0.9-32/RVAideMemoire/NAMESPACE                    |    5 -
 RVAideMemoire-0.9-32/RVAideMemoire/R/chisq.bintest.R            |    9 ++-
 RVAideMemoire-0.9-32/RVAideMemoire/R/cochran.qtest.R            |    5 +
 RVAideMemoire-0.9-32/RVAideMemoire/R/fc.multcomp.R              |    2 
 RVAideMemoire-0.9-32/RVAideMemoire/R/mshapiro.test.R            |    1 
 RVAideMemoire-0.9-32/RVAideMemoire/R/pairwise.manova.R          |    5 +
 RVAideMemoire-0.9-32/RVAideMemoire/R/wilcox.paired.multcomp.R   |    1 
 RVAideMemoire-0.9-32/RVAideMemoire/R/zzz.R                      |    2 
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 RVAideMemoire-0.9-32/RVAideMemoire/man/chisq.bintest.Rd         |    2 
 RVAideMemoire-0.9-32/RVAideMemoire/man/cochran.qtest.Rd         |    2 
 15 files changed, 39 insertions(+), 33 deletions(-)

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New package GDAtools with initial version 1.0
Package: GDAtools
Type: Package
Title: A toolbox for the analysis of categorical data in social sciences, and especially Geometric Data Analysis.
Version: 1.0
Date: 2014-03-04
Author: Nicolas Robette
Maintainer: Nicolas Robette
Imports: FactoMineR
Suggests: cluster, WeightedCluster
Description: This package contains functions for 'specific' MCA (Multiple Correspondence Analysis), 'class specific' MCA, computing and plotting structuring factors and concentration ellipses, 'standardized' MCA, inductive tests and others tools for Geometric Data Analysis. It also provides functions for the translation of logit models coefficients into percentages (forthcoming), weighted contingency tables and an association measure - i.e. Percentages of Maximum Deviation from Independence (PEM).
License: GPL (>= 2)
URL: http://nicolas.robette.free.fr/outils_eng.html
Packaged: 2014-03-04 15:03:12 UTC; nicolas
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-03-04 20:54:42

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Package factorplot updated to version 1.1-1 with previous version 1.1 dated 2014-01-09

Title: factorplot
Description: Calculate, print, summarize and plot pairwise differences from GLMs, GLHT or Multinomial Logit models
Author: Dave Armstrong (Department of Political Science, UW-Milwaukee)
Maintainer: Dave Armstrong

Diff between factorplot versions 1.1 dated 2014-01-09 and 1.1-1 dated 2014-03-04

 DESCRIPTION    |    6 +++---
 MD5            |    6 +++---
 NAMESPACE      |    2 ++
 R/factorplot.R |    4 ++--
 4 files changed, 10 insertions(+), 8 deletions(-)

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Package CIDnetworks updated to version 0.2.5 with previous version 0.2.2 dated 2014-02-11

Title: Generative models for networks with conditionally independent dyadic structure
Description: Generative models for networks with conditionally independent dyadic structure
Author: Beau Dabbs, Brian Junker, Mauricio Sadinle, Tracy Sweet, A.C. Thomas
Maintainer: A.C. Thomas

Diff between CIDnetworks versions 0.2.2 dated 2014-02-11 and 0.2.5 dated 2014-03-04

 CIDnetworks-0.2.2/CIDnetworks/src/Makevars                          |only
 CIDnetworks-0.2.2/CIDnetworks/src/Makevars.win                      |only
 CIDnetworks-0.2.2/CIDnetworks/vignettes/pseudo-cross-validation.Rmd |only
 CIDnetworks-0.2.5/CIDnetworks/DESCRIPTION                           |   12 
 CIDnetworks-0.2.5/CIDnetworks/MD5                                   |   33 +-
 CIDnetworks-0.2.5/CIDnetworks/NAMESPACE                             |    6 
 CIDnetworks-0.2.5/CIDnetworks/R/CID-gibbs.R                         |  144 ++++++++--
 CIDnetworks-0.2.5/CIDnetworks/R/COV-reference.R                     |   11 
 CIDnetworks-0.2.5/CIDnetworks/R/HBM-reference.R                     |   39 ++
 CIDnetworks-0.2.5/CIDnetworks/R/LSM-reference.R                     |   16 +
 CIDnetworks-0.2.5/CIDnetworks/R/LVM-reference.R                     |   13 
 CIDnetworks-0.2.5/CIDnetworks/R/MMSBM-reference.R                   |   40 ++
 CIDnetworks-0.2.5/CIDnetworks/R/SBM-reference.R                     |   44 ++-
 CIDnetworks-0.2.5/CIDnetworks/R/SR-reference.R                      |   14 
 CIDnetworks-0.2.5/CIDnetworks/R/plotting-pieces.R                   |   27 +
 CIDnetworks-0.2.5/CIDnetworks/man/CID-gibbs.Rd                      |    8 
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 CIDnetworks-0.2.5/CIDnetworks/vignettes/basic-check-sequence.Rmd    |   38 --
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 20 files changed, 352 insertions(+), 95 deletions(-)

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New package bioPN with initial version 1.2.0
Package: bioPN
Version: 1.2.0
Date: 2014-03-04
Title: Simulation of deterministic and stochastic biochemical reaction networks using Petri Nets
Author: Roberto Bertolusso and Marek Kimmel
Maintainer: Roberto Bertolusso
Description: bioPN is a package suited to perform simulation of deterministic and stochastic systems of biochemical reaction networks. Models are defined using a subset of Petri Nets, in a way that is close at how chemical reactions are defined. For deterministic solutions, bioPN creates the associated system of differential equations "on the fly", and solves it with a Runge Kutta Dormand Prince 45 explicit algorithm. For stochastic solutions, bioPN offers variants of Gillespie algorithm, or SSA. For hybrid deterministic/stochastic, it employs the Haseltine and Rawlings algorithm, that partitions the system in fast and slow reactions. bioPN algorithms are developed in C to achieve adequate performance.
NeedsCompilation: yes
License: GPL (>= 2)
Packaged: 2014-03-04 20:41:55 UTC; mame
Repository: CRAN
Date/Publication: 2014-03-04 21:55:07

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Package sesem updated to version 1.0.1 with previous version 1.0 dated 2014-02-05

Title: Spatially explicit structural equation modeling
Description: Structural equation modeling (SEM) is a powerful statistical approach for the testing of networks of direct and indirect theoretical causal relationships in complex datasets with intercorrelated dependent and independent variables. Here we implement a simple method for spatially explicit SEM (SE-SEM) based on the analysis of variance covariance matrices calculated across a range of lag distances. This method provides readily interpretable plots of the change in path coefficients across scale.
Author: Eric Lamb [aut, cre], Kerrie Mengersen [aut], Katherine Stewart [aut], Udayanga Attanayake [aut], Steven Siciliano [aut]
Maintainer: Eric Lamb

Diff between sesem versions 1.0 dated 2014-02-05 and 1.0.1 dated 2014-03-04

 sesem-1.0.1/sesem/DESCRIPTION          |    8 ++++----
 sesem-1.0.1/sesem/MD5                  |   12 ++++++------
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 8 files changed, 29 insertions(+), 35 deletions(-)

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Package ecoengine updated to version 1.2 with previous version 1.1.2 dated 2014-01-30

Title: Programmatic interface to the API serving UC Berkeley's Natural History Data
Description: The ecoengine (http://ecoengine.berkeley.edu/) provides access to more than 2 million georeferenced specimen records from the Berkeley Natural History Museums. http://bnhm.berkeley.edu/
Author: Karthik Ram [aut, cre]
Maintainer: Karthik Ram

Diff between ecoengine versions 1.1.2 dated 2014-01-30 and 1.2 dated 2014-03-04

 ecoengine-1.1.2/ecoengine/inst/Makefile          |only
 ecoengine-1.2/ecoengine/DESCRIPTION              |    6 +--
 ecoengine-1.2/ecoengine/MD5                      |   22 +++++------
 ecoengine-1.2/ecoengine/NAMESPACE                |    1 
 ecoengine-1.2/ecoengine/NEWS                     |    8 +++-
 ecoengine-1.2/ecoengine/R/ee_observations.R      |    8 ++--
 ecoengine-1.2/ecoengine/R/ee_utils.R             |   46 ++++++++++++++++++++---
 ecoengine-1.2/ecoengine/README.md                |    7 ++-
 ecoengine-1.2/ecoengine/inst/Using_ecoengine.Rmd |    2 -
 ecoengine-1.2/ecoengine/inst/Using_ecoengine.md  |    2 -
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 13 files changed, 75 insertions(+), 32 deletions(-)

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New package leiv with initial version 2.0-6
Package: leiv
Version: 2.0-6
Type: Package
Title: Bivariate linear errors-in-variables estimation
Date: 2014-03-04
Authors@R: c(person("David", "Leonard", role = c("aut", "cre"), email = "davidsleonard@outlook.com"))
Maintainer: David Leonard
Depends: R (>= 2.9.0)
Imports: methods, stats, graphics
Suggests: grDevices
Description: Estimate the slope and intercept of a bivariate linear relationship by calculating a posterior density that is invariant to interchange and scaling of the coordinates.
License: GPL (>= 2)
URL: http://www.r-project.org
Packaged: 2014-03-04 13:23:26 UTC; macuser
Author: David Leonard [aut, cre]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-03-04 15:37:32

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New package bigpca with initial version 1.0
Package: bigpca
Type: Package
Title: PCA, transpose and multicore functionality for big.matrix objects
Version: 1.0
Date: 2014-03-02
Author: Nicholas Cooper
Maintainer: Nicholas Cooper
Depends: R (>= 3.0), grDevices, graphics, stats, utils, reader (>= 1.0.1), NCmisc (>= 1.1), bigmemory (>= 4.0.0), biganalytics
Imports: parallel, methods, bigmemory.sri, BH, irlba
OS_type: unix
Description: This package adds wrappers to add functionality for big.matrix objects (see the bigmemory project). This allows fast scalable principle components analysis (PCA), or singular value decomposition (SVD). There are also functions for transposing, using multicore 'apply' functionality, data importing and for compact display of big.matrix objects. Most functions also work for standard matrices if RAM is sufficient.
License: GPL (>= 2)
Collate: 'bigpca.R'
Packaged: 2014-03-04 14:10:33 UTC; ncooper
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-03-04 15:37:28

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Package RcppEigen updated to version 0.3.2.1.0 with previous version 0.3.2.0.3 dated 2014-03-01

Title: Rcpp integration for the Eigen templated linear algebra library.
Description: R and Eigen integration using Rcpp. Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers and related algorithms. It supports dense and sparse matrices on integer, floating point and complex numbers, decompositions of such matrices, and solutions of linear systems. Its performance on many algorithms is comparable with some of the best implementations based on Lapack and level-3 BLAS. The RcppEigen package includes the header files from the Eigen C++ template library (currently version 3.2.0). Thus users do not need to install Eigen itself in order to use RcppEigen. Since version 3.1.1, Eigen is licensed under the Mozilla Public License (version 2); earlier version were licensed under the GNU LGPL version 3 or later. RcppEigen (the Rcpp bindings/bridge to Eigen) is licensed under the GNU GPL version 2 or later, as is the rest of Rcpp.
Author: Douglas Bates, Romain Francois and Dirk Eddelbuettel; the authors of Eigen for the included version of Eigen
Maintainer: Dirk Eddelbuettel

Diff between RcppEigen versions 0.3.2.0.3 dated 2014-03-01 and 0.3.2.1.0 dated 2014-03-04

 ChangeLog                                                                 |    8 
 DESCRIPTION                                                               |    8 
 MD5                                                                       |  106 ++--
 README.md                                                                 |    2 
 inst/NEWS.Rd                                                              |    6 
 inst/doc/RcppEigen-Introduction.pdf                                       |binary
 inst/include/Eigen/Eigen2Support                                          |   15 
 inst/include/Eigen/src/Cholesky/LDLT.h                                    |   52 +-
 inst/include/Eigen/src/CholmodSupport/CholmodSupport.h                    |   24 -
 inst/include/Eigen/src/Core/Array.h                                       |    2 
 inst/include/Eigen/src/Core/BooleanRedux.h                                |    8 
 inst/include/Eigen/src/Core/EigenBase.h                                   |   30 -
 inst/include/Eigen/src/Core/IO.h                                          |    9 
 inst/include/Eigen/src/Core/Matrix.h                                      |    2 
 inst/include/Eigen/src/Core/MatrixBase.h                                  |   45 +
 inst/include/Eigen/src/Core/PermutationMatrix.h                           |    3 
 inst/include/Eigen/src/Core/PlainObjectBase.h                             |   16 
 inst/include/Eigen/src/Core/Ref.h                                         |    5 
 inst/include/Eigen/src/Core/StableNorm.h                                  |   27 -
 inst/include/Eigen/src/Core/Transpose.h                                   |    4 
 inst/include/Eigen/src/Core/VectorwiseOp.h                                |    5 
 inst/include/Eigen/src/Core/arch/SSE/MathFunctions.h                      |   11 
 inst/include/Eigen/src/Core/arch/SSE/PacketMath.h                         |   11 
 inst/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h            |    6 
 inst/include/Eigen/src/Core/products/GeneralMatrixVector.h                |   15 
 inst/include/Eigen/src/Core/products/SelfadjointMatrixVector.h            |    6 
 inst/include/Eigen/src/Core/util/Macros.h                                 |    9 
 inst/include/Eigen/src/Core/util/Memory.h                                 |   13 
 inst/include/Eigen/src/Eigen2Support/SVD.h                                |    3 
 inst/include/Eigen/src/Geometry/EulerAngles.h                             |    2 
 inst/include/Eigen/src/Geometry/Quaternion.h                              |   27 -
 inst/include/Eigen/src/Geometry/Transform.h                               |    4 
 inst/include/Eigen/src/QR/ColPivHouseholderQR.h                           |    2 
 inst/include/Eigen/src/QR/FullPivHouseholderQR.h                          |   53 --
 inst/include/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h                 |   18 
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 inst/include/Eigen/src/SparseCore/MappedSparseMatrix.h                    |    2 
 inst/include/Eigen/src/SparseCore/SparseBlock.h                           |    4 
 inst/include/Eigen/src/SparseCore/SparseColEtree.h                        |    6 
 inst/include/Eigen/src/SparseCore/SparseDenseProduct.h                    |    4 
 inst/include/Eigen/src/SparseCore/SparseMatrix.h                          |   21 
 inst/include/Eigen/src/SparseCore/SparseMatrixBase.h                      |    4 
 inst/include/Eigen/src/SparseCore/SparsePermutation.h                     |    4 
 inst/include/Eigen/src/SparseCore/SparseProduct.h                         |    5 
 inst/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h        |   13 
 inst/include/Eigen/src/SparseCore/SparseUtil.h                            |    2 
 inst/include/Eigen/src/SparseLU/SparseLU.h                                |    8 
 inst/include/Eigen/src/SparseLU/SparseLU_Memory.h                         |   43 +
 inst/include/Eigen/src/SparseQR/SparseQR.h                                |   13 
 inst/include/Eigen/src/plugins/BlockMethods.h                             |  240 +++++-----
 inst/include/Eigen/src/plugins/MatrixCwiseBinaryOps.h                     |    4 
 inst/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h |   10 
 inst/include/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h     |    2 
 54 files changed, 565 insertions(+), 416 deletions(-)

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Package Matrix updated to version 1.1-2-2 with previous version 1.1-2 dated 2014-01-28

Title: Sparse and Dense Matrix Classes and Methods
Description: Classes and methods for dense and sparse matrices and operations on them using LAPACK and SuiteSparse.
Author: Douglas Bates and Martin Maechler
Maintainer: Martin Maechler

Diff between Matrix versions 1.1-2 dated 2014-01-28 and 1.1-2-2 dated 2014-03-04

 DESCRIPTION                |    8 ++++----
 MD5                        |   42 +++++++++++++++++++++---------------------
 NAMESPACE                  |    2 +-
 R/Matrix.R                 |    4 ++--
 R/denseMatrix.R            |    2 +-
 R/nsparseMatrix.R          |    2 +-
 R/products.R               |    1 -
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 R/sparseVector.R           |    2 +-
 TODO                       |    4 ++--
 inst/doc/Comparisons.pdf   |binary
 inst/doc/Design-issues.pdf |binary
 inst/doc/Intro2Matrix.pdf  |binary
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 man/Cholesky.Rd            |    2 +-
 man/all.equal-methods.Rd   |    4 ++++
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 tests/Class+Meth.R         |    1 +
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 tests/factorizing.R        |   18 +++++++++++++++---
 tests/matprod.R            |    1 +
 22 files changed, 66 insertions(+), 43 deletions(-)

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Package insol updated to version 1.1.1 with previous version 1.1 dated 2013-04-10

Title: Solar Radiation
Description: Functions to compute insolation on complex terrain.
Author: Javier G. Corripio
Maintainer: Javier G. Corripio

Diff between insol versions 1.1 dated 2013-04-10 and 1.1.1 dated 2014-03-04

 DESCRIPTION          |    9 ++++-----
 MD5                  |   12 ++++++------
 NAMESPACE            |    2 +-
 R/cgrad.R            |    2 +-
 R/doshade.R          |    2 +-
 man/insol-package.Rd |    4 ++--
 man/insolation.Rd    |   24 +++++++++++++++++-------
 7 files changed, 32 insertions(+), 23 deletions(-)

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Package fwsim updated to version 0.2-6 with previous version 0.2-5 dated 2012-05-11

Title: Fisher-Wright Population Simulation
Description: Simulates a population under the Fisher-Wright model with a stepwise neutral mutation process. The population sizes are random Poisson distributed and different kinds of population growth are supported. It is possible to specify locus and direction (in terms of upwards and downwards mutation rate) specific mutation rate. Intermediate generations can be saved in order to study e.g. drift.
Author: Mikkel Meyer Andersen and Poul Svante Eriksen
Maintainer: Mikkel Meyer Andersen

Diff between fwsim versions 0.2-5 dated 2012-05-11 and 0.2-6 dated 2014-03-04

 DESCRIPTION |   19 +++++++------------
 MD5         |    4 ++--
 NEWS        |    3 +++
 3 files changed, 12 insertions(+), 14 deletions(-)

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New package Table1Heatmap with initial version 1.1
Package: Table1Heatmap
Type: Package
Title: Table 1 Heatmap
Version: 1.1
Date: 2014-03-03
Author: Philip C Schouten
Maintainer: Philip C Schouten
Description: Table 1 is the classical way to describe the patients in a clinical study. The amount of splits in the data in such a table is limited. Table1Heatmap draws a heatmap of all crosstables that can be generated with the data. Users can choose between showing the actual crosstables or direction of effect of associations, and highlight associations by number of patients or p-values.
License: LGPL-3
Depends: colorRamps
Packaged: 2014-03-04 09:57:16 UTC; p.schouten
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-03-04 11:08:44

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Package sensitivity updated to version 1.8-1 with previous version 1.8-0 dated 2014-02-27

Title: Sensitivity Analysis
Description: A collection of functions for factor screening, global sensitivity analysis and reliability sensitivity analysis of model output.
Author: Gilles Pujol, Bertrand Iooss, Alexandre Janon with contributions from Laurent Gilquin, Loic Le Gratiet, Paul Lemaitre
Maintainer: Bertrand Iooss

Diff between sensitivity versions 1.8-0 dated 2014-02-27 and 1.8-1 dated 2014-03-04

 DESCRIPTION        |    8 ++++----
 MD5                |   10 +++++-----
 R/sobolGPmethods.R |    1 +
 inst/COPYRIGHT     |    2 +-
 man/sobolGP.Rd     |    6 +++---
 src/as.cpp         |   27 ++++++++++++++++++++++++++-
 6 files changed, 40 insertions(+), 14 deletions(-)

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Package ROracle updated to version 1.1-11 with previous version 1.1-10 dated 2013-05-15

Title: OCI based Oracle database interface for R
Description: Oracle database interface (DBI) driver for R. This is a DBI-compliant Oracle driver based on the OCI.
Author: Denis Mukhin, David A. James and Jake Luciani
Maintainer: Denis Mukhin

Diff between ROracle versions 1.1-10 dated 2013-05-15 and 1.1-11 dated 2014-03-04

 ROracle-1.1-10/ROracle/src/routl.c                                     |only
 ROracle-1.1-11/ROracle/DESCRIPTION                                     |   15 
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 ROracle-1.1-11/ROracle/MD5                                             |  273 +-
 ROracle-1.1-11/ROracle/NAMESPACE                                       |    1 
 ROracle-1.1-11/ROracle/NEWS                                            |   17 
 ROracle-1.1-11/ROracle/R/dbi.R                                         |   25 
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 ROracle-1.1-11/ROracle/R/zzz.R                                         |    5 
 ROracle-1.1-11/ROracle/configure                                       |   18 
 ROracle-1.1-11/ROracle/configure.ac                                    |    2 
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 ROracle-1.1-11/ROracle/inst/doc/man/de/Oracle.Rd                       |  240 +-
 ROracle-1.1-11/ROracle/inst/doc/man/de/dbCallProc-methods.Rd           |    2 
 ROracle-1.1-11/ROracle/inst/doc/man/de/dbCommit-methods.Rd             |   72 
 ROracle-1.1-11/ROracle/inst/doc/man/de/dbConnect-methods.Rd            |  365 ++-
 ROracle-1.1-11/ROracle/inst/doc/man/de/dbDriver-methods.Rd             |   88 
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 ROracle-1.1-11/ROracle/inst/doc/man/de/dbReadTable-methods.Rd          |  372 ++-
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 ROracle-1.1-11/ROracle/inst/doc/man/de/fetch-methods.Rd                |   58 
 ROracle-1.1-11/ROracle/inst/doc/man/de/summary-methods.Rd              |   49 
 ROracle-1.1-11/ROracle/inst/doc/man/en/OraConnection-class.Rd          |   31 
 ROracle-1.1-11/ROracle/inst/doc/man/en/dbConnect-methods.Rd            |  226 +-
 ROracle-1.1-11/ROracle/inst/doc/man/en/dbReadTable-methods.Rd          |   36 
 ROracle-1.1-11/ROracle/inst/doc/man/es/OraConnection-class.Rd          |   35 
 ROracle-1.1-11/ROracle/inst/doc/man/es/Oracle.Rd                       |  236 +-
 ROracle-1.1-11/ROracle/inst/doc/man/es/dbCallProc-methods.Rd           |    2 
 ROracle-1.1-11/ROracle/inst/doc/man/es/dbCommit-methods.Rd             |   72 
 ROracle-1.1-11/ROracle/inst/doc/man/es/dbConnect-methods.Rd            |  363 ++-
 ROracle-1.1-11/ROracle/inst/doc/man/es/dbDriver-methods.Rd             |   88 
 ROracle-1.1-11/ROracle/inst/doc/man/es/dbGetInfo-methods.Rd            |   83 
 ROracle-1.1-11/ROracle/inst/doc/man/es/dbListConnections-methods.Rd    |   74 
 ROracle-1.1-11/ROracle/inst/doc/man/es/dbReadTable-methods.Rd          |  372 ++-
 ROracle-1.1-11/ROracle/inst/doc/man/es/dbSendQuery-methods.Rd          |  166 +
 ROracle-1.1-11/ROracle/inst/doc/man/es/dbSetDataMappings-methods.Rd    |    2 
 ROracle-1.1-11/ROracle/inst/doc/man/es/fetch-methods.Rd                |   58 
 ROracle-1.1-11/ROracle/inst/doc/man/es/summary-methods.Rd              |   49 
 ROracle-1.1-11/ROracle/inst/doc/man/fr/OraConnection-class.Rd          |   35 
 ROracle-1.1-11/ROracle/inst/doc/man/fr/Oracle.Rd                       |  250 +-
 ROracle-1.1-11/ROracle/inst/doc/man/fr/dbCallProc-methods.Rd           |    2 
 ROracle-1.1-11/ROracle/inst/doc/man/fr/dbCommit-methods.Rd             |   72 
 ROracle-1.1-11/ROracle/inst/doc/man/fr/dbConnect-methods.Rd            |  363 ++-
 ROracle-1.1-11/ROracle/inst/doc/man/fr/dbDriver-methods.Rd             |   88 
 ROracle-1.1-11/ROracle/inst/doc/man/fr/dbGetInfo-methods.Rd            |   83 
 ROracle-1.1-11/ROracle/inst/doc/man/fr/dbListConnections-methods.Rd    |   74 
 ROracle-1.1-11/ROracle/inst/doc/man/fr/dbReadTable-methods.Rd          |  374 ++-
 ROracle-1.1-11/ROracle/inst/doc/man/fr/dbSendQuery-methods.Rd          |  165 +
 ROracle-1.1-11/ROracle/inst/doc/man/fr/dbSetDataMappings-methods.Rd    |    2 
 ROracle-1.1-11/ROracle/inst/doc/man/fr/fetch-methods.Rd                |   58 
 ROracle-1.1-11/ROracle/inst/doc/man/fr/summary-methods.Rd              |   49 
 ROracle-1.1-11/ROracle/inst/doc/man/it/OraConnection-class.Rd          |   35 
 ROracle-1.1-11/ROracle/inst/doc/man/it/Oracle.Rd                       |  254 +-
 ROracle-1.1-11/ROracle/inst/doc/man/it/dbCallProc-methods.Rd           |    2 
 ROracle-1.1-11/ROracle/inst/doc/man/it/dbCommit-methods.Rd             |   72 
 ROracle-1.1-11/ROracle/inst/doc/man/it/dbConnect-methods.Rd            |  362 ++-
 ROracle-1.1-11/ROracle/inst/doc/man/it/dbDriver-methods.Rd             |   88 
 ROracle-1.1-11/ROracle/inst/doc/man/it/dbGetInfo-methods.Rd            |   83 
 ROracle-1.1-11/ROracle/inst/doc/man/it/dbListConnections-methods.Rd    |   74 
 ROracle-1.1-11/ROracle/inst/doc/man/it/dbReadTable-methods.Rd          |  374 ++-
 ROracle-1.1-11/ROracle/inst/doc/man/it/dbSendQuery-methods.Rd          |  165 +
 ROracle-1.1-11/ROracle/inst/doc/man/it/dbSetDataMappings-methods.Rd    |    2 
 ROracle-1.1-11/ROracle/inst/doc/man/it/fetch-methods.Rd                |   58 
 ROracle-1.1-11/ROracle/inst/doc/man/it/summary-methods.Rd              |   49 
 ROracle-1.1-11/ROracle/inst/doc/man/ja/OraConnection-class.Rd          |   35 
 ROracle-1.1-11/ROracle/inst/doc/man/ja/Oracle.Rd                       |  247 +-
 ROracle-1.1-11/ROracle/inst/doc/man/ja/dbCallProc-methods.Rd           |    2 
 ROracle-1.1-11/ROracle/inst/doc/man/ja/dbCommit-methods.Rd             |   72 
 ROracle-1.1-11/ROracle/inst/doc/man/ja/dbConnect-methods.Rd            |  363 ++-
 ROracle-1.1-11/ROracle/inst/doc/man/ja/dbDriver-methods.Rd             |   88 
 ROracle-1.1-11/ROracle/inst/doc/man/ja/dbGetInfo-methods.Rd            |   83 
 ROracle-1.1-11/ROracle/inst/doc/man/ja/dbListConnections-methods.Rd    |   74 
 ROracle-1.1-11/ROracle/inst/doc/man/ja/dbReadTable-methods.Rd          |  377 ++-
 ROracle-1.1-11/ROracle/inst/doc/man/ja/dbSendQuery-methods.Rd          |  166 +
 ROracle-1.1-11/ROracle/inst/doc/man/ja/dbSetDataMappings-methods.Rd    |    2 
 ROracle-1.1-11/ROracle/inst/doc/man/ja/fetch-methods.Rd                |   58 
 ROracle-1.1-11/ROracle/inst/doc/man/ja/summary-methods.Rd              |   49 
 ROracle-1.1-11/ROracle/inst/doc/man/ko/OraConnection-class.Rd          |   35 
 ROracle-1.1-11/ROracle/inst/doc/man/ko/Oracle.Rd                       |  250 +-
 ROracle-1.1-11/ROracle/inst/doc/man/ko/dbCallProc-methods.Rd           |    2 
 ROracle-1.1-11/ROracle/inst/doc/man/ko/dbCommit-methods.Rd             |   72 
 ROracle-1.1-11/ROracle/inst/doc/man/ko/dbConnect-methods.Rd            |  362 ++-
 ROracle-1.1-11/ROracle/inst/doc/man/ko/dbDriver-methods.Rd             |   88 
 ROracle-1.1-11/ROracle/inst/doc/man/ko/dbGetInfo-methods.Rd            |   83 
 ROracle-1.1-11/ROracle/inst/doc/man/ko/dbListConnections-methods.Rd    |   74 
 ROracle-1.1-11/ROracle/inst/doc/man/ko/dbReadTable-methods.Rd          |  376 ++-
 ROracle-1.1-11/ROracle/inst/doc/man/ko/dbSendQuery-methods.Rd          |  165 +
 ROracle-1.1-11/ROracle/inst/doc/man/ko/dbSetDataMappings-methods.Rd    |    2 
 ROracle-1.1-11/ROracle/inst/doc/man/ko/fetch-methods.Rd                |   58 
 ROracle-1.1-11/ROracle/inst/doc/man/ko/summary-methods.Rd              |   49 
 ROracle-1.1-11/ROracle/inst/doc/man/pt_BR/OraConnection-class.Rd       |   35 
 ROracle-1.1-11/ROracle/inst/doc/man/pt_BR/Oracle.Rd                    |  242 +-
 ROracle-1.1-11/ROracle/inst/doc/man/pt_BR/dbCallProc-methods.Rd        |    2 
 ROracle-1.1-11/ROracle/inst/doc/man/pt_BR/dbCommit-methods.Rd          |   72 
 ROracle-1.1-11/ROracle/inst/doc/man/pt_BR/dbConnect-methods.Rd         |  365 ++-
 ROracle-1.1-11/ROracle/inst/doc/man/pt_BR/dbDriver-methods.Rd          |   88 
 ROracle-1.1-11/ROracle/inst/doc/man/pt_BR/dbGetInfo-methods.Rd         |   83 
 ROracle-1.1-11/ROracle/inst/doc/man/pt_BR/dbListConnections-methods.Rd |   74 
 ROracle-1.1-11/ROracle/inst/doc/man/pt_BR/dbReadTable-methods.Rd       |  376 ++-
 ROracle-1.1-11/ROracle/inst/doc/man/pt_BR/dbSendQuery-methods.Rd       |  165 +
 ROracle-1.1-11/ROracle/inst/doc/man/pt_BR/dbSetDataMappings-methods.Rd |    2 
 ROracle-1.1-11/ROracle/inst/doc/man/pt_BR/fetch-methods.Rd             |   58 
 ROracle-1.1-11/ROracle/inst/doc/man/pt_BR/summary-methods.Rd           |   49 
 ROracle-1.1-11/ROracle/inst/doc/man/zh_CN/OraConnection-class.Rd       |   35 
 ROracle-1.1-11/ROracle/inst/doc/man/zh_CN/Oracle.Rd                    |  236 +-
 ROracle-1.1-11/ROracle/inst/doc/man/zh_CN/dbCallProc-methods.Rd        |    2 
 ROracle-1.1-11/ROracle/inst/doc/man/zh_CN/dbCommit-methods.Rd          |   72 
 ROracle-1.1-11/ROracle/inst/doc/man/zh_CN/dbConnect-methods.Rd         |  363 ++-
 ROracle-1.1-11/ROracle/inst/doc/man/zh_CN/dbDriver-methods.Rd          |   88 
 ROracle-1.1-11/ROracle/inst/doc/man/zh_CN/dbGetInfo-methods.Rd         |   83 
 ROracle-1.1-11/ROracle/inst/doc/man/zh_CN/dbListConnections-methods.Rd |   74 
 ROracle-1.1-11/ROracle/inst/doc/man/zh_CN/dbReadTable-methods.Rd       |  376 ++-
 ROracle-1.1-11/ROracle/inst/doc/man/zh_CN/dbSendQuery-methods.Rd       |  165 +
 ROracle-1.1-11/ROracle/inst/doc/man/zh_CN/dbSetDataMappings-methods.Rd |    2 
 ROracle-1.1-11/ROracle/inst/doc/man/zh_CN/fetch-methods.Rd             |   58 
 ROracle-1.1-11/ROracle/inst/doc/man/zh_CN/summary-methods.Rd           |   49 
 ROracle-1.1-11/ROracle/inst/doc/man/zh_TW/OraConnection-class.Rd       |   35 
 ROracle-1.1-11/ROracle/inst/doc/man/zh_TW/Oracle.Rd                    |  252 +-
 ROracle-1.1-11/ROracle/inst/doc/man/zh_TW/dbCallProc-methods.Rd        |    2 
 ROracle-1.1-11/ROracle/inst/doc/man/zh_TW/dbCommit-methods.Rd          |   72 
 ROracle-1.1-11/ROracle/inst/doc/man/zh_TW/dbConnect-methods.Rd         |  363 ++-
 ROracle-1.1-11/ROracle/inst/doc/man/zh_TW/dbDriver-methods.Rd          |   88 
 ROracle-1.1-11/ROracle/inst/doc/man/zh_TW/dbGetInfo-methods.Rd         |   83 
 ROracle-1.1-11/ROracle/inst/doc/man/zh_TW/dbListConnections-methods.Rd |   74 
 ROracle-1.1-11/ROracle/inst/doc/man/zh_TW/dbReadTable-methods.Rd       |  377 ++-
 ROracle-1.1-11/ROracle/inst/doc/man/zh_TW/dbSendQuery-methods.Rd       |  165 +
 ROracle-1.1-11/ROracle/inst/doc/man/zh_TW/dbSetDataMappings-methods.Rd |    2 
 ROracle-1.1-11/ROracle/inst/doc/man/zh_TW/fetch-methods.Rd             |   58 
 ROracle-1.1-11/ROracle/inst/doc/man/zh_TW/summary-methods.Rd           |   49 
 ROracle-1.1-11/ROracle/man/OraConnection-class.Rd                      |   31 
 ROracle-1.1-11/ROracle/man/dbConnect-methods.Rd                        |  226 +-
 ROracle-1.1-11/ROracle/man/dbReadTable-methods.Rd                      |   36 
 ROracle-1.1-11/ROracle/src/rodbi.c                                     | 1112 ++++++++--
 ROracle-1.1-11/ROracle/src/rodbi.h                                     |    5 
 ROracle-1.1-11/ROracle/src/rooci.c                                     |   25 
 ROracle-1.1-11/ROracle/src/rooci.h                                     |   31 
 138 files changed, 12054 insertions(+), 4756 deletions(-)

More information about ROracle at CRAN
Permanent link

Package RcmdrPlugin.EZR updated to version 1.23 with previous version 1.22 dated 2014-02-13

Title: R Commander Plug-in for the EZR (Easy R) Package
Description: EZR (Easy R) adds a variety of statistical functions, including survival analyses, ROC analyses, metaanalyses, sample size calculation, and so on, to the R commander. EZR enables point-and-click easy access to statistical functions, especially for medical statistics. EZR is platform-independent and runs on Windows, Mac OS X, and UNIX. Its complete manual is available only in Japanese (Chugai Igakusha, ISBN-10: 4498109007), but an report that introduced the investigation of EZR was published in Bone Marrow Transplantation (Nature Publishing Group) as an Open article. This report can be used as a simple manual. It can be freely downloaded from the journal website as shown below.
Author: Yoshinobu Kanda
Maintainer: Yoshinobu Kanda

Diff between RcmdrPlugin.EZR versions 1.22 dated 2014-02-13 and 1.23 dated 2014-03-04

 DESCRIPTION                                 |   11 
 MD5                                         |   20 
 NEWS                                        |    4 
 R/EZR.R                                     |  847 ++++++++++++++++++++--------
 inst/CHANGES                                |    4 
 inst/etc/menus.txt                          |  143 ++--
 inst/po/ja/LC_MESSAGES/R-RcmdrPlugin.EZR.mo |binary
 man/EZR.Rd                                  |    5 
 man/EZR.dialogs.Rd                          |    2 
 man/w.multi.Rd                              |    3 
 po/R-RcmdrPlugin.EZR.po                     |  103 +++
 11 files changed, 840 insertions(+), 302 deletions(-)

More information about RcmdrPlugin.EZR at CRAN
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Package likeLTD updated to version 5.2.0 with previous version 5.1.0 dated 2014-02-14

Title: Tools to determine DNA profile evidence.
Description: Tools to determine DNA profile Weight of Evidence. For further information see the likeLTD guide at the URL provided, or the paper under citation.
Author: David Balding, Adrian Timpson, Christopher Steele, Mayeul d'Avezac, James Hetherington.
Maintainer: Christopher Steele

Diff between likeLTD versions 5.1.0 dated 2014-02-14 and 5.2.0 dated 2014-03-04

 DESCRIPTION                      |    6 -
 MD5                              |   20 +++---
 NAMESPACE                        |    2 
 R/hypothesis.R                   |    9 ++
 R/maximize.R                     |  124 +++++++++++++++++++++++++++++++++++++--
 R/objectives.R                   |   13 ++--
 inst/doc/likeLTDguide.pdf        |only
 inst/doc/usage.pdf               |binary
 man/create.likelihood.Rd         |    2 
 man/create.likelihood.vectors.Rd |    9 ++
 man/get.likely.genotypes.Rd      |only
 man/optimisation.params.Rd       |   11 ++-
 12 files changed, 169 insertions(+), 27 deletions(-)

More information about likeLTD at CRAN
Permanent link

Package iqLearn updated to version 1.2 with previous version 1.1 dated 2013-11-27

Title: Interactive Q-learning
Description: Estimate an optimal dynamic treatment regime using Interactive Q-learning
Author: Kristin A. Linn, Eric B. Laber, Leonard A. Stefanski
Maintainer: Kristin A. Linn

Diff between iqLearn versions 1.1 dated 2013-11-27 and 1.2 dated 2014-03-04

 DESCRIPTION            |    8 -
 MD5                    |   14 +--
 R/learnIQ1Est.R        |    8 -
 inst/doc/iqLearn.R     |   86 ++++++++++----------
 inst/doc/iqLearn.Rnw   |  205 +++++++++++++++++++++++++++----------------------
 inst/doc/iqLearn.pdf   |binary
 vignettes/iqLearn.Rnw  |  205 +++++++++++++++++++++++++++----------------------
 vignettes/iq_cites.bib |   46 +++++++---
 8 files changed, 317 insertions(+), 255 deletions(-)

More information about iqLearn at CRAN
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