Title: An R Package for Mediation Analysis Confidence Intervals
Diff between RMediation versions 1.1.2 dated 2013-09-12 and 1.1.3 dated 2014-03-07
Description: RMediation package provides functions to compute confidence
intervals (CIs) for a well-defined nonlinear function of the model
parameters (e.g., product of k coefficients) in single--level and
multilevel structural equation models.
Author: Davood Tofighi
Maintainer: Davood Tofighi
DESCRIPTION | 21 ++--
MD5 | 21 ++--
NAMESPACE | 9 +
NEWS |only
R/ci.R |only
R/confintAsymp.R |only
R/confintMC.R |only
R/medci.R | 21 +---
R/qprodnormalMeeker.R | 4
man/RMediation-package.Rd | 37 ++++---
man/ci.Rd |only
man/medci.Rd | 3
man/pprodnormal.Rd | 215 +++++++++++++++++++++++-----------------------
man/qprodnormal.Rd | 2
14 files changed, 173 insertions(+), 160 deletions(-)
Title: Network meta-analysis with R
Diff between netmeta versions 0.3-1 dated 2013-08-01 and 0.4-0 dated 2014-03-07
Description: Network meta-analysis following methods by Rücker (2012) and Krahn et al. (2013)
Author: Gerta Rücker
Maintainer: Guido Schwarzer
netmeta-0.3-1/netmeta/COPYRIGHT |only
netmeta-0.3-1/netmeta/R/forest.R |only
netmeta-0.3-1/netmeta/R/network.R |only
netmeta-0.4-0/netmeta/DESCRIPTION | 15 +--
netmeta-0.4-0/netmeta/MD5 | 45 ++++++---
netmeta-0.4-0/netmeta/NAMESPACE | 12 ++
netmeta-0.4-0/netmeta/NEWS | 19 ++++
netmeta-0.4-0/netmeta/R/decomp.design.R |only
netmeta-0.4-0/netmeta/R/forest.netmeta.R | 18 +--
netmeta-0.4-0/netmeta/R/format.TE.R |only
netmeta-0.4-0/netmeta/R/netgraph.R |only
netmeta-0.4-0/netmeta/R/netheat.R |only
netmeta-0.4-0/netmeta/R/netmeasures.R |only
netmeta-0.4-0/netmeta/R/netmeta.R | 51 ++++++++---
netmeta-0.4-0/netmeta/R/nma.krahn.R |only
netmeta-0.4-0/netmeta/R/nma.ruecker.R |only
netmeta-0.4-0/netmeta/R/p.ci.R |only
netmeta-0.4-0/netmeta/R/prepare.R | 2
netmeta-0.4-0/netmeta/R/print.decomp.design.R |only
netmeta-0.4-0/netmeta/R/print.netmeta.R | 39 --------
netmeta-0.4-0/netmeta/R/print.summary.netmeta.R | 38 --------
netmeta-0.4-0/netmeta/R/summary.netmeta.R | 14 +--
netmeta-0.4-0/netmeta/man/Senn2013.Rd | 19 ++--
netmeta-0.4-0/netmeta/man/as.data.frame.netmeta.Rd | 7 -
netmeta-0.4-0/netmeta/man/decomp.design.Rd |only
netmeta-0.4-0/netmeta/man/forest.netmeta.Rd | 10 +-
netmeta-0.4-0/netmeta/man/netgraph.Rd |only
netmeta-0.4-0/netmeta/man/netheat.Rd |only
netmeta-0.4-0/netmeta/man/netmeasures.Rd |only
netmeta-0.4-0/netmeta/man/netmeta.Rd | 95 ++++++++++++---------
netmeta-0.4-0/netmeta/man/print.decomp.design.Rd |only
netmeta-0.4-0/netmeta/man/print.netmeta.Rd | 12 +-
32 files changed, 205 insertions(+), 191 deletions(-)
Title: Linear Group Fixed Effects
Diff between lfe versions 1.6-1188 dated 2014-01-23 and 1.7-1282 dated 2014-03-07
Description: Transforms away factors with many levels prior to doing an OLS.
Useful for estimating linear models with multiple group fixed effects, and for
estimating linear models which uses factors as pure control variables.
Includes support for instrumented variables, robust and multi-way clustered standard errors.
Author: Simen Gaure, Ragnar Frisch Centre for Economic Research
Maintainer: Simen Gaure
lfe-1.6-1188/lfe/R/lfe.R |only
lfe-1.6-1188/lfe/man/diammatrix.Rd |only
lfe-1.6-1188/lfe/src/build |only
lfe-1.7-1282/lfe/DESCRIPTION | 18
lfe-1.7-1282/lfe/MD5 | 134 +--
lfe-1.7-1282/lfe/NAMESPACE | 7
lfe-1.7-1282/lfe/R/btrap.R |only
lfe-1.7-1282/lfe/R/compfactor.R |only
lfe-1.7-1282/lfe/R/demeanlist.R |only
lfe-1.7-1282/lfe/R/efactory.R |only
lfe-1.7-1282/lfe/R/felm.R |only
lfe-1.7-1282/lfe/R/getfe.R |only
lfe-1.7-1282/lfe/R/is.estimable.R |only
lfe-1.7-1282/lfe/R/kaczmarz.R | 371 --------
lfe-1.7-1282/lfe/R/startup.R |only
lfe-1.7-1282/lfe/R/utils.R | 132 ++-
lfe-1.7-1282/lfe/build/autoconf |only
lfe-1.7-1282/lfe/configure | 22
lfe-1.7-1282/lfe/configure.ac |only
lfe-1.7-1282/lfe/exec/lfescript | 7
lfe-1.7-1282/lfe/inst/TODO | 5
lfe-1.7-1282/lfe/inst/doc/CHANGELOG | 44 -
lfe-1.7-1282/lfe/inst/doc/identification.R | 39
lfe-1.7-1282/lfe/inst/doc/identification.Rnw | 40
lfe-1.7-1282/lfe/inst/doc/identification.pdf |binary
lfe-1.7-1282/lfe/inst/doc/lfeguide.txt | 56 +
lfe-1.7-1282/lfe/inst/doc/lfehow.R | 27
lfe-1.7-1282/lfe/inst/doc/lfehow.Rnw | 36
lfe-1.7-1282/lfe/inst/doc/lfehow.pdf |binary
lfe-1.7-1282/lfe/inst/doc/speed.R | 34
lfe-1.7-1282/lfe/inst/doc/speed.Rnw | 50 -
lfe-1.7-1282/lfe/inst/doc/speed.pdf |binary
lfe-1.7-1282/lfe/man/btrap.Rd | 11
lfe-1.7-1282/lfe/man/demeanlist.Rd | 8
lfe-1.7-1282/lfe/man/efactory.Rd | 11
lfe-1.7-1282/lfe/man/felm.Rd | 142 ++-
lfe-1.7-1282/lfe/man/getfe.Rd | 11
lfe-1.7-1282/lfe/man/is.estimable.Rd | 4
lfe-1.7-1282/lfe/man/kaczmarz.Rd | 2
lfe-1.7-1282/lfe/man/lfe-package.Rd | 19
lfe-1.7-1282/lfe/man/summary.felm.Rd | 8
lfe-1.7-1282/lfe/src/Makevars.in | 2
lfe-1.7-1282/lfe/src/lfe.c | 153 ++-
lfe-1.7-1282/lfe/tests/Examples |only
lfe-1.7-1282/lfe/tests/cluster.R | 52 -
lfe-1.7-1282/lfe/tests/cluster.Rout.save | 232 ++---
lfe-1.7-1282/lfe/tests/comparelm.R | 4
lfe-1.7-1282/lfe/tests/comparelm.Rout.save | 104 +-
lfe-1.7-1282/lfe/tests/degenerate.R | 6
lfe-1.7-1282/lfe/tests/degenerate.Rout.save | 37
lfe-1.7-1282/lfe/tests/efcheck.R | 4
lfe-1.7-1282/lfe/tests/efcheck.Rout.save | 467 +++++------
lfe-1.7-1282/lfe/tests/fourfac.R | 14
lfe-1.7-1282/lfe/tests/fourfac.Rout.save | 157 +--
lfe-1.7-1282/lfe/tests/interact.R | 6
lfe-1.7-1282/lfe/tests/interact.Rout.save | 20
lfe-1.7-1282/lfe/tests/ivtest.R | 6
lfe-1.7-1282/lfe/tests/ivtest.Rout.save | 114 +-
lfe-1.7-1282/lfe/tests/lfetest.R | 4
lfe-1.7-1282/lfe/tests/lfetest.Rout.save | 1099 ++++++++++++--------------
lfe-1.7-1282/lfe/tests/multiway.R |only
lfe-1.7-1282/lfe/tests/multiway.Rout.save |only
lfe-1.7-1282/lfe/tests/naomit.R | 4
lfe-1.7-1282/lfe/tests/naomit.Rout.save | 104 +-
lfe-1.7-1282/lfe/tests/nonest.R | 16
lfe-1.7-1282/lfe/tests/nonest.Rout.save | 160 +--
lfe-1.7-1282/lfe/tests/onefac.R | 10
lfe-1.7-1282/lfe/tests/onefac.Rout.save | 126 +-
lfe-1.7-1282/lfe/tests/verify.R | 12
lfe-1.7-1282/lfe/tests/verify.Rout.save | 97 +-
lfe-1.7-1282/lfe/vignettes/identification.Rnw | 40
lfe-1.7-1282/lfe/vignettes/lfehow.Rnw | 36
lfe-1.7-1282/lfe/vignettes/speed.Rnw | 50 -
73 files changed, 2133 insertions(+), 2241 deletions(-)
Title: Latent Variable Analysis
Diff between lavaan versions 0.5-15 dated 2013-11-15 and 0.5-16 dated 2014-03-07
Description: Fit a variety of latent variable models, including confirmatory
factor analysis, structural equation modeling and latent growth curve models.
Author: Yves Rosseel [aut, cre],
Daniel Oberski [ctb],
Jarrett Byrnes [ctb],
Leonard Vanbrabant [ctb],
Victoria Savalei [ctb],
Ed Merkle [ctb],
Michael Hallquist [ctb],
Mijke Rhemtulla [ctb],
Myrsini Katsikatsou [ctb],
Mariska Barendse [ctb]
Maintainer: Yves Rosseel
lavaan-0.5-15/lavaan/R/00lavModel.R |only
lavaan-0.5-15/lavaan/R/01lavOptim.R |only
lavaan-0.5-15/lavaan/R/01lavaanOptions.R |only
lavaan-0.5-15/lavaan/R/02lavML.R |only
lavaan-0.5-15/lavaan/R/02lavaanUser.R |only
lavaan-0.5-15/lavaan/R/03lavaanSample.R |only
lavaan-0.5-15/lavaan/R/04lavaanStart.R |only
lavaan-0.5-15/lavaan/R/05lavaanModel.R |only
lavaan-0.5-15/lavaan/R/06lavaanEstimate.R |only
lavaan-0.5-15/lavaan/R/07lavaanVcov.R |only
lavaan-0.5-15/lavaan/R/08lavaanTest.R |only
lavaan-0.5-15/lavaan/R/09lavaanFit.R |only
lavaan-0.5-15/lavaan/R/10lavaan-methods.R |only
lavaan-0.5-15/lavaan/R/lav_derivatives.R |only
lavaan-0.5-15/lavaan/R/lav_pml.R |only
lavaan-0.5-16/lavaan/DESCRIPTION | 26
lavaan-0.5-16/lavaan/MD5 | 130 +-
lavaan-0.5-16/lavaan/NAMESPACE | 9
lavaan-0.5-16/lavaan/R/00class.R | 5
lavaan-0.5-16/lavaan/R/00generic.R | 20
lavaan-0.5-16/lavaan/R/01RefClass_00lavModel.R |only
lavaan-0.5-16/lavaan/R/01RefClass_01lavOptim.R |only
lavaan-0.5-16/lavaan/R/01RefClass_02lavML.R |only
lavaan-0.5-16/lavaan/R/FIX_semTools.R |only
lavaan-0.5-16/lavaan/R/ctr_estfun.R | 49
lavaan-0.5-16/lavaan/R/ctr_pairwise_fit.R | 80 -
lavaan-0.5-16/lavaan/R/lav_bootstrap.R | 173 +-
lavaan-0.5-16/lavaan/R/lav_bootstrap_lrt.R | 13
lavaan-0.5-16/lavaan/R/lav_cor.R | 179 +-
lavaan-0.5-16/lavaan/R/lav_data.R | 12
lavaan-0.5-16/lavaan/R/lav_deriv.R | 59
lavaan-0.5-16/lavaan/R/lav_export.R | 4
lavaan-0.5-16/lavaan/R/lav_fabin.R | 6
lavaan-0.5-16/lavaan/R/lav_fiml.R |only
lavaan-0.5-16/lavaan/R/lav_fit.R |only
lavaan-0.5-16/lavaan/R/lav_fit_measures.R | 286 ++--
lavaan-0.5-16/lavaan/R/lav_gamma.R | 50
lavaan-0.5-16/lavaan/R/lav_independence.R | 123 +
lavaan-0.5-16/lavaan/R/lav_information.R | 234 ++-
lavaan-0.5-16/lavaan/R/lav_integrate.R | 14
lavaan-0.5-16/lavaan/R/lav_matrix.R | 8
lavaan-0.5-16/lavaan/R/lav_methods.R |only
lavaan-0.5-16/lavaan/R/lav_model.R |only
lavaan-0.5-16/lavaan/R/lav_model_compute.R |only
lavaan-0.5-16/lavaan/R/lav_model_estimate.R |only
lavaan-0.5-16/lavaan/R/lav_model_gradient.R |only
lavaan-0.5-16/lavaan/R/lav_model_gradient_mml.R |only
lavaan-0.5-16/lavaan/R/lav_model_gradient_pml.R |only
lavaan-0.5-16/lavaan/R/lav_model_lik.R |only
lavaan-0.5-16/lavaan/R/lav_model_objective.R |only
lavaan-0.5-16/lavaan/R/lav_model_utils.R |only
lavaan-0.5-16/lavaan/R/lav_model_wls.R |only
lavaan-0.5-16/lavaan/R/lav_modification.R | 57
lavaan-0.5-16/lavaan/R/lav_muthen1984.R | 3
lavaan-0.5-16/lavaan/R/lav_norm.R |only
lavaan-0.5-16/lavaan/R/lav_objective.R | 96 -
lavaan-0.5-16/lavaan/R/lav_ols.R | 13
lavaan-0.5-16/lavaan/R/lav_options.R |only
lavaan-0.5-16/lavaan/R/lav_partable.R | 835 +++++++-----
lavaan-0.5-16/lavaan/R/lav_partable_constraints.R |only
lavaan-0.5-16/lavaan/R/lav_partable_independence.R |only
lavaan-0.5-16/lavaan/R/lav_partable_unrestricted.R |only
lavaan-0.5-16/lavaan/R/lav_partable_vnames.R | 55
lavaan-0.5-16/lavaan/R/lav_polychor.R | 2
lavaan-0.5-16/lavaan/R/lav_predict.R | 736 ++++++-----
lavaan-0.5-16/lavaan/R/lav_representation_lisrel.R | 1350 ++++++++++++++++-----
lavaan-0.5-16/lavaan/R/lav_residuals.R | 68 -
lavaan-0.5-16/lavaan/R/lav_samplestats.R |only
lavaan-0.5-16/lavaan/R/lav_simulate.R | 38
lavaan-0.5-16/lavaan/R/lav_standardize.R | 9
lavaan-0.5-16/lavaan/R/lav_start.R |only
lavaan-0.5-16/lavaan/R/lav_syntax.R | 495 ++++++-
lavaan-0.5-16/lavaan/R/lav_syntax_independence.R |only
lavaan-0.5-16/lavaan/R/lav_tables.R | 25
lavaan-0.5-16/lavaan/R/lav_test.R |only
lavaan-0.5-16/lavaan/R/lav_test_LRT.R |only
lavaan-0.5-16/lavaan/R/lav_test_Wald.R |only
lavaan-0.5-16/lavaan/R/lav_vcov.R |only
lavaan-0.5-16/lavaan/R/lavaan.R | 618 +++++----
lavaan-0.5-16/lavaan/R/prelav.R | 25
lavaan-0.5-16/lavaan/man/cfa.Rd | 19
lavaan-0.5-16/lavaan/man/fitMeasures.Rd | 9
lavaan-0.5-16/lavaan/man/growth.Rd | 19
lavaan-0.5-16/lavaan/man/lavCor.Rd |only
lavaan-0.5-16/lavaan/man/lavTestLRT.Rd |only
lavaan-0.5-16/lavaan/man/lavTestWald.Rd |only
lavaan-0.5-16/lavaan/man/lavaan.Rd | 20
lavaan-0.5-16/lavaan/man/model.syntax.Rd | 20
lavaan-0.5-16/lavaan/man/pmlfit.Rd |only
lavaan-0.5-16/lavaan/man/sem.Rd | 19
90 files changed, 3931 insertions(+), 2080 deletions(-)
Title: Gaussian Processes Tool-Kit
Diff between gptk versions 1.07 dated 2013-10-16 and 1.08 dated 2014-03-07
Description: The gptk package implements a general-purpose toolkit for Gaussian
process regression with a variety of covariance functions (e.g. RBF, Mattern, polynomial, etc).
Based on a MATLAB implementation by Neil D. Lawrence. See inst/doc/index.html for more details.
Author: Alfredo Kalaitzis
Maintainer: Alfredo Kalaitzis
DESCRIPTION | 10 +++++-----
MD5 | 10 +++++-----
NAMESPACE | 2 ++
R/cmpndKernExpandParam.R | 3 ++-
R/cmpndKernGradient.R | 13 ++++++++-----
inst/doc/index.html | 4 ++++
6 files changed, 26 insertions(+), 16 deletions(-)
Title: Variational Bayes Latent Position Cluster Model for networks.
Diff between VBLPCM versions 2.4.2 dated 2013-10-31 and 2.4.3 dated 2014-03-07
Description: A package to fit and simulate latent position and cluster
models for statistical networks using a Variational Bayes approximation.
Author: Michael Salter-Townshend
Maintainer: Michael Salter-Townshend
CHANGELOG | 2 ++
DESCRIPTION | 10 ++++++----
MD5 | 14 +++++++-------
R/start.R | 2 ++
R/zzz.R | 4 ++--
man/VBLPCM-package.Rd | 4 ++--
src/KL_funcs.c | 4 ++--
src/VBLPCM.c | 5 +++--
8 files changed, 26 insertions(+), 19 deletions(-)
Title: raster: Geographic data analysis and modeling
Diff between raster versions 2.2-12 dated 2014-01-20 and 2.2-31 dated 2014-03-07
Description: Reading, writing, manipulating, analyzing and modeling of gridded spatial data. The package implements basic and high-level functions. Processing of very large files is supported.
Author: Robert J. Hijmans [cre, aut],
Jacob van Etten [ctb],
Matteo Mattiuzzi [ctb],
Michael Sumner [ctb],
Jonathan A. Greenberg [ctb],
Oscar Perpinan Lamigueiro [ctb],
Andrew Bevan [ctb],
Etienne B. Racine [ctb],
Ashton Shortridge [ctb]
Maintainer: Robert J. Hijmans
raster-2.2-12/raster/R/addHistory.R |only
raster-2.2-12/raster/R/meta.R |only
raster-2.2-31/raster/ChangeLog | 22
raster-2.2-31/raster/DESCRIPTION | 13
raster-2.2-31/raster/MD5 | 125 ++--
raster-2.2-31/raster/R/GDALtransient.R | 10
raster-2.2-31/raster/R/RGB.R |only
raster-2.2-31/raster/R/animate.R | 32 -
raster-2.2-31/raster/R/approxNA.R | 4
raster-2.2-31/raster/R/boundaries.R | 6
raster-2.2-31/raster/R/cellStats.R | 19
raster-2.2-31/raster/R/compare.R | 14
raster-2.2-31/raster/R/compareCRS.R | 21
raster-2.2-31/raster/R/cor.R |only
raster-2.2-31/raster/R/corLocal.R |only
raster-2.2-31/raster/R/cropSpatial.R | 2
raster-2.2-31/raster/R/disaggregate.R | 2
raster-2.2-31/raster/R/dotdens.R | 10
raster-2.2-31/raster/R/extractLines.R | 35 -
raster-2.2-31/raster/R/extractPoints.R | 2
raster-2.2-31/raster/R/extractPolygons.R | 4
raster-2.2-31/raster/R/getValuesFocal.R | 23
raster-2.2-31/raster/R/hdrIDRISI.R | 2
raster-2.2-31/raster/R/imageplot2.R | 69 +-
raster-2.2-31/raster/R/indexReplace.R | 2
raster-2.2-31/raster/R/indexReplaceBrick.R | 12
raster-2.2-31/raster/R/intersect.R | 12
raster-2.2-31/raster/R/makeProjString.R | 2
raster-2.2-31/raster/R/mask.R | 324 +++++++----
raster-2.2-31/raster/R/metadata.R |only
raster-2.2-31/raster/R/netCDFtoRasterCD.R | 2
raster-2.2-31/raster/R/netCDFutil.R | 7
raster-2.2-31/raster/R/netCDFwriteCD.R | 25
raster-2.2-31/raster/R/origin.R | 39 +
raster-2.2-31/raster/R/projection.R | 8
raster-2.2-31/raster/R/raster.R | 73 +-
raster-2.2-31/raster/R/rasterFromASCII.R | 4
raster-2.2-31/raster/R/rasterFromBIL.R | 2
raster-2.2-31/raster/R/rasterFromGDAL.R | 2
raster-2.2-31/raster/R/rasterFromIDRISI.R | 2
raster-2.2-31/raster/R/rasterFromRasterFile.R | 15
raster-2.2-31/raster/R/rasterToPolygons.R | 4
raster-2.2-31/raster/R/rasterizePolygons.R | 28
raster-2.2-31/raster/R/rasterizePolygons3.R | 2
raster-2.2-31/raster/R/read.R | 16
raster-2.2-31/raster/R/readCells.R | 2
raster-2.2-31/raster/R/writeRaster.R | 6
raster-2.2-31/raster/R/writeStartStopRaster.R | 31 -
raster-2.2-31/raster/build/vignette.rds |binary
raster-2.2-31/raster/inst/doc/Raster.R | 732 +++++++++++++-------------
raster-2.2-31/raster/inst/doc/Raster.pdf |binary
raster-2.2-31/raster/inst/doc/functions.R | 686 ++++++++++++------------
raster-2.2-31/raster/inst/doc/functions.pdf |binary
raster-2.2-31/raster/inst/doc/rasterfile.pdf |binary
raster-2.2-31/raster/man/RGB.Rd |only
raster-2.2-31/raster/man/animate.Rd |only
raster-2.2-31/raster/man/compareCRS.Rd |only
raster-2.2-31/raster/man/corLocal.Rd |only
raster-2.2-31/raster/man/disaggregate.Rd | 2
raster-2.2-31/raster/man/extend.Rd | 2
raster-2.2-31/raster/man/extract.Rd | 3
raster-2.2-31/raster/man/focal.Rd | 2
raster-2.2-31/raster/man/getValuesFocal.Rd | 23
raster-2.2-31/raster/man/intersect.Rd | 11
raster-2.2-31/raster/man/mask.Rd | 16
raster-2.2-31/raster/man/metadata.Rd |only
raster-2.2-31/raster/man/origin.Rd | 21
raster-2.2-31/raster/man/plotRGB.Rd | 2
raster-2.2-31/raster/man/raster.Rd | 16
69 files changed, 1437 insertions(+), 1114 deletions(-)
Title: Methods for dimension reduction for regression
Diff between dr versions 3.0.7 dated 2011-10-19 and 3.0.8 dated 2014-03-07
Description: Functions, methods, and datasets for fitting dimension
reduction regression, using slicing (methods SAVE and SIR), Principal
Hessian Directions (phd, using residuals and the response), and an
iterative IRE. Partial methods, that condition on categorical
predictors are also available. A variety of tests, and stepwise
deletion of predictors, is also included. Also included is
code for computing permutation tests of dimension. Adding additional
methods of estimating dimension is straightforward.
For documentation, see the vignette in the package. With version 3.0.4,
the arguments for dr.step have been modified.
Author: Sanford Weisberg
Maintainer: Sanford Weisberg
dr-3.0.7/dr/data/banknote.rda |only
dr-3.0.7/dr/inst/extdata |only
dr-3.0.7/dr/misc |only
dr-3.0.8/dr/DESCRIPTION | 34 ++++++++++-----------
dr-3.0.8/dr/MD5 | 24 +++++----------
dr-3.0.8/dr/NEWS |only
dr-3.0.8/dr/R/dr.R | 59 ++++++++++++++++++++++----------------
dr-3.0.8/dr/build |only
dr-3.0.8/dr/data/ais.rda |binary
dr-3.0.8/dr/inst/doc/overview.R |only
dr-3.0.8/dr/inst/doc/overview.Rnw | 5 +--
dr-3.0.8/dr/inst/doc/overview.pdf |binary
dr-3.0.8/dr/vignettes |only
13 files changed, 63 insertions(+), 59 deletions(-)
Title: Analysis and visualization of macroevolutionary dynamics on
phylogenetic trees
Diff between BAMMtools versions 1.0 dated 2014-03-05 and 1.0.1 dated 2014-03-07
Description: BAMMtools provides functions for analyzing and visualizing complex macroevolutionary dynamics on phylogenetic trees. It is a companion package to the command line program BAMM (Bayesian Analysis of Macroevolutionary Mixtures) and is entirely oriented towards the analysis, interpretation, and visualization of evolutionary rates. Functionality includes visualization of rate shifts on phylogenies, estimating evolutionary rates through time, comparing posterior distributions of evolutionary rates across clades, comparing diversification models using Bayes factors, and more.
Author: Dan Rabosky, Mike Grundler, Pascal Title, Carlos Anderson, Jeff Shi, Joseph Brown, Huateng Huang
Maintainer: Dan Rabosky
BAMMtools-1.0.1/BAMMtools/DESCRIPTION | 8 ++---
BAMMtools-1.0.1/BAMMtools/MD5 | 14 +++++-----
BAMMtools-1.0.1/BAMMtools/R/getTipRates.R |only
BAMMtools-1.0.1/BAMMtools/R/plotRateThroughTime.R | 17 ++++++++----
BAMMtools-1.0.1/BAMMtools/R/transparentColor.R | 2 -
BAMMtools-1.0.1/BAMMtools/man/getTipRates.Rd |only
BAMMtools-1.0.1/BAMMtools/man/plotRateThroughTime.Rd | 26 +++++++++++++++++++
BAMMtools-1.0.1/BAMMtools/src/dtrates.c | 3 +-
BAMMtools-1.0/BAMMtools/R/getMeanTipRateStates.R |only
BAMMtools-1.0/BAMMtools/man/getMeanTipRateStates.Rd |only
10 files changed, 51 insertions(+), 19 deletions(-)
Title: A package for complex surveys including plausible values
Diff between svyPVpack versions 0.1 dated 2013-10-31 and 0.1-1 dated 2014-03-07
Description: This package deals with data which stem from survey designs including plausible values. This package has been created to handle data from Large Scale Assessments like PISA, PIAAC etc. which use complex survey designs to draw the sample and plausible values to report person related estimates. Various functions/statistics (mean, quantile, GLM etc.) are provided to handle this kind of data.
Author: Manuel Reif
Maintainer: Manuel Reif
DESCRIPTION | 11 ++++++-----
MD5 | 5 +++--
inst/CITATION |only
man/svyPVpack-package.Rd | 4 ++--
4 files changed, 11 insertions(+), 9 deletions(-)
Title: Interfaces to various state-of-art SVD and eigensolvers
Diff between svd versions 0.3.3 dated 2013-08-30 and 0.3.3-2 dated 2014-03-07
Description: This package provides various R bindings to various SVD and eigensolvers (PROPACK, nuTRLan)
Author: Anton Korobeynikov
Maintainer: Anton Korobeynikov
DESCRIPTION | 8 ++++----
LICENSE |only
MD5 | 5 +++--
man/svd.Rd | 2 +-
4 files changed, 8 insertions(+), 7 deletions(-)
Title: Shape Analysis of Outlines
Diff between Momocs versions 0.2-5 dated 2014-02-17 and 0.2-6 dated 2014-03-07
Description: Momocs is intended to ease and popularize shape analysis
of outlines (especially using elliptical Fourier analysis). It
mostly hinges on the functions developed in Morphometrics with
R (Claude, 2008). From outline extraction of images and
elliptical Fourier calculation to multivariate analysis and the
visualization of transformations within the morphological
space, Momocs provides a complete and convenient toolkit to
specialists within every field that are, or may be, interested
in morphological comparisons of outlines.
Author: Vincent Bonhomme, Sandrine Picq, Julien Claude with
suggestions and contributions from Cedric Gaucherel, Sarah Ivorra, Ricardo Kriebel,
Neus Martinez, Marcelo Reginato, Evan Saitta, Norbert Telmon, Asher Wishkerman.
Maintainer: Vincent Bonhomme
ChangeLog | 222 +++----
DESCRIPTION | 13
MD5 | 20
R/Coe.R | 4
R/Coo.R | 1506 ++++++++++++++++++++++++-------------------------
R/global.R | 50 -
man/Abstract-Momocs.Rd | 14
man/coeff.sel.Rd | 7
man/dudi.plot.Rd | 14
man/hqual.Rd | 11
man/hquant.Rd | 14
11 files changed, 950 insertions(+), 925 deletions(-)
Title: A Gene-signatures finder tools
Diff between geneSignatureFinder versions 2012.08.20 dated 2012-09-12 and 2014.02.17 dated 2014-03-07
More information about geneSignatureFinder at CRAN
Description: A tool for finding an ensemble gene-signature by a steepest ascending algorithm partially supervised by survival time data.
Author: Stefano M. Pagnotta, Michele Ceccarelli
Maintainer: Stefano M. Pagnotta
DESCRIPTION | 23 +--
MD5 | 64 ++++----
NAMESPACE | 7
R/BHcorrection.R | 3
R/BICs.R | 22 +--
R/NCPUS.R | 73 ++--------
R/checkGeneForSeed.R | 18 +-
R/classify.R | 8 -
R/geneSignatureFinder-internal.R | 126 +++++++++++++++++
R/goodAndPoorClassification.R | 30 +---
R/pValueFun.R | 3
R/pamUnbiased.R | 48 +++---
R/parallelSignatureFinder.R | 184 +++++++++++++++++--------
R/plot.gSignature.R |only
R/print.gSignature.R |only
R/puttingAllTogether.R | 282 +++++++++++++++++----------------------
R/seedsFinder.R | 2
R/signatureFinder.R | 10 -
R/tValueFun.R | 3
data/geNSCLC.rda |binary
data/stNSCLC.rda |binary
man/BICs.Rd | 7
man/NCPUS.Rd | 16 --
man/classify.Rd | 24 +--
man/ensembleTable.Rd | 2
man/goodAndPoorClassification.Rd | 57 +------
man/importance.Rd | 15 +-
man/puttingAllTogether.Rd | 20 --
man/removeGeneFrom.Rd | 33 ++--
man/searchResultsSummaryTable.Rd | 13 -
man/seedsFinder.Rd | 6
man/signatureFinder.Rd | 16 +-
man/signatureSummaryTable.Rd | 13 -
man/testGE.Rd | 25 ++-
34 files changed, 624 insertions(+), 529 deletions(-)
Permanent link
Title: Analyses of Phylogenetics and Evolution
Diff between ape versions 3.1 dated 2014-03-05 and 3.1-1 dated 2014-03-07
Description: ape provides functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from allelic and nucleotide data, reading and writing nucleotide sequences, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.
Author: Emmanuel Paradis [aut, cre, cph],
Ben Bolker [aut],
Julien Claude [aut],
Hoa Sien Cuong [aut],
Richard Desper [aut],
Benoit Durand [aut],
Julien Dutheil [aut],
Olivier Gascuel [aut],
Christoph Heibl [aut],
Daniel Lawson [aut],
Vincent Lefort [aut],
Pierre Legendre [aut],
Jim Lemon [aut],
Johan Nylander [aut],
Rainer Opgen-Rhein [aut],
Andrei-Alin Popescu [aut],
Klaus Schliep [aut],
Korbinian Strimmer [aut],
Damien de Vienne [aut]
Maintainer: Emmanuel Paradis
DESCRIPTION | 8 ++++----
MD5 | 18 +++++++++---------
NEWS | 9 +++++++++
R/dist.topo.R | 15 +++++----------
R/rTrait.R | 12 ++++++------
inst/doc/MoranI.pdf |binary
man/ace.Rd | 14 --------------
man/all.equal.phylo.Rd | 5 -----
man/as.phylo.Rd | 3 ++-
man/corClasses.Rd | 6 +++---
10 files changed, 38 insertions(+), 52 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-09-17 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-03-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-09-08 1.0-5
2011-04-24 1.0-4
2011-02-04 1.0-3
2010-09-30 1.0-2
2010-09-28 1.0-1
2010-05-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-06-11 0.3
2013-05-07 0.2
2013-03-07 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-06-03 0.6-4
Title: Rcpp integration for the Eigen templated linear algebra library.
Diff between RcppEigen versions 0.3.2.1.0 dated 2014-03-04 and 0.3.2.1.1 dated 2014-03-07
Description: R and Eigen integration using Rcpp.
Eigen is a C++ template library for linear algebra: matrices,
vectors, numerical solvers and related algorithms. It supports dense
and sparse matrices on integer, floating point and complex numbers,
decompositions of such matrices, and solutions of linear systems. Its
performance on many algorithms is comparable with some of the best
implementations based on Lapack and level-3 BLAS.
The RcppEigen package includes the header files from the Eigen C++
template library (currently version 3.2.0). Thus users do not need to
install Eigen itself in order to use RcppEigen.
Since version 3.1.1, Eigen is licensed under the Mozilla Public License
(version 2); earlier version were licensed under the GNU LGPL version 3 or
later. RcppEigen (the Rcpp bindings/bridge to Eigen) is licensed under the
GNU GPL version 2 or later, as is the rest of Rcpp.
Author: Douglas Bates, Romain Francois and Dirk Eddelbuettel;
the authors of Eigen for the included version of Eigen
Maintainer: Dirk Eddelbuettel
ChangeLog | 14 ++++++++++
DESCRIPTION | 6 ++--
MD5 | 10 +++----
inst/NEWS.Rd | 7 +++++
inst/doc/RcppEigen-Introduction.pdf |binary
inst/include/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h | 2 +
6 files changed, 31 insertions(+), 8 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-06-09 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-01-17 0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-11-06 1.3
2013-10-09 1.2
2013-06-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-10-23 0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-06-04 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-24 1.5.5
2013-09-19 1.5.4
2013-03-12 1.5.3
2012-11-07 1.5
2012-07-24 1.4.5
2012-05-25 1.4.1
2012-05-22 1.3
2012-04-17 1.2.6
2012-03-29 1.2.2
2012-03-09 1.2.1
2011-11-29 1.1
2011-10-24 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-29 1.30-2
2013-04-12 1.30-1
2012-09-12 1.20-1
2011-10-20 1.10-2
2010-12-07 1.10-1
2009-03-04 1.01-1
2007-04-13 0.91-6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-03-29 0.2.19
2009-11-03 0.2.10
2008-11-28 0.2.6
2008-11-27 0.2.5
2007-11-27 0.2.4
2007-04-24 0.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-05-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-06-12 3.1-6
2011-04-26 3.1-5
2009-07-18 3.1-4
2009-02-01 3.1-2
2007-06-28 3.1-1
Title: Create "Table 1" to describe baseline characteristics
Diff between tableone versions 0.3.3 dated 2014-02-25 and 0.3.4 dated 2014-03-07
Description: This package creates "Table 1", i.e., description of baseline
patient characteristics, which is essential in every medical research. This
package provides functions to create such summaries for continuous and
categorical variables, optionally with subgroup comparisons. The package
was inspired by and based on descriptive statistics functions in Deducer,
a Java-based GUI package by Ian Fellows. This package does not require GUI
or Java, and intended for command-line users.
Author: Kazuki Yoshida, Justin Bohn
Maintainer: Kazuki Yoshida
DESCRIPTION | 8 ++---
MD5 | 12 +++----
NEWS | 16 +++++++++-
R/CreateCatTable.R | 2 -
R/CreateContTable.R | 2 -
R/CreateTableOne.R | 9 +++++
R/modules.R | 81 ++++++++++++++++++++++++++++++++++++++++++----------
7 files changed, 101 insertions(+), 29 deletions(-)
Title: Methods for computing spatial, temporal, and spatiotemporal
statistics
Diff between synchrony versions 0.2.1 dated 2014-01-27 and 0.2.2 dated 2014-03-07
Description: Methods for computing spatial, temporal, and spatiotemporal statistics including: empirical univariate, bivariate and multivariate variograms; fitting variogram models; phase locking and synchrony analysis; generating autocorrelated and cross-correlated matrices.
Author: Tarik C. Gouhier
Maintainer: Tarik C. Gouhier
ChangeLog | 5 +++++
DESCRIPTION | 12 ++++++------
MD5 | 16 ++++++++--------
R/print.phase.R | 11 +++++++----
R/vario.fit.R | 3 ++-
data/bird.traits.rda |binary
data/pisco.data.rda |binary
inst/NEWS.Rd | 10 ++++++++++
man/synchrony-package.Rd | 4 ++--
9 files changed, 40 insertions(+), 21 deletions(-)
Title: Six Sigma Tools for Quality and Process Improvement
Diff between SixSigma versions 0.7-0 dated 2012-11-30 and 0.8-1 dated 2014-03-07
Description: This package contains functions and utilities to perform
Statistical Analyses in the Six Sigma way.
Through the DMAIC cycle (Define, Measure, Analyze, Improve, Control),
you can manage several Quality Management studies:
Gage R&R, Capability Analysis, Control Charts, Loss Function Analysis,
etc. Data frames used in the book "Six Sigma with R" (Springer, 2012)
are also included in the package.
Author: Emilio L. Cano, Javier M. Moguerza and Andrés Redchuk
Maintainer: Emilio L. Cano
SixSigma-0.7-0/SixSigma/SixSigma-Ex.R |only
SixSigma-0.7-0/SixSigma/man/SixSigma-package.Rd |only
SixSigma-0.8-1/SixSigma/DESCRIPTION | 30
SixSigma-0.8-1/SixSigma/MD5 | 89
SixSigma-0.8-1/SixSigma/NAMESPACE | 41
SixSigma-0.8-1/SixSigma/NEWS | 19
SixSigma-0.8-1/SixSigma/R/SixSigma-package.R | 14
SixSigma-0.8-1/SixSigma/R/data.R | 1125 +++++------
SixSigma-0.8-1/SixSigma/R/ss.ca.R | 9
SixSigma-0.8-1/SixSigma/R/ss.cc.R | 27
SixSigma-0.8-1/SixSigma/R/ss.ci.R | 8
SixSigma-0.8-1/SixSigma/R/ss.lfa.R | 2
SixSigma-0.8-1/SixSigma/R/ss.rr.R | 162 +
SixSigma-0.8-1/SixSigma/build |only
SixSigma-0.8-1/SixSigma/inst/doc/HelicopterInstructions.R |only
SixSigma-0.8-1/SixSigma/inst/doc/HelicopterInstructions.Rnw | 2
SixSigma-0.8-1/SixSigma/inst/doc/HelicopterInstructions.pdf |binary
SixSigma-0.8-1/SixSigma/inst/tests/test-lfa.R | 2
SixSigma-0.8-1/SixSigma/man/SixSigma.Rd |only
SixSigma-0.8-1/SixSigma/man/ss.ca.yield.Rd | 100
SixSigma-0.8-1/SixSigma/man/ss.ca.z.Rd | 119 -
SixSigma-0.8-1/SixSigma/man/ss.cc.Rd | 140 -
SixSigma-0.8-1/SixSigma/man/ss.cc.constants.Rd | 82
SixSigma-0.8-1/SixSigma/man/ss.ceDiag.Rd | 147 -
SixSigma-0.8-1/SixSigma/man/ss.ci.Rd | 163 -
SixSigma-0.8-1/SixSigma/man/ss.data.batteries.Rd | 83
SixSigma-0.8-1/SixSigma/man/ss.data.bolts.Rd | 77
SixSigma-0.8-1/SixSigma/man/ss.data.ca.Rd | 77
SixSigma-0.8-1/SixSigma/man/ss.data.doe1.Rd | 82
SixSigma-0.8-1/SixSigma/man/ss.data.doe2.Rd | 84
SixSigma-0.8-1/SixSigma/man/ss.data.pastries.Rd | 81
SixSigma-0.8-1/SixSigma/man/ss.data.pb1.Rd | 81
SixSigma-0.8-1/SixSigma/man/ss.data.pb2.Rd | 85
SixSigma-0.8-1/SixSigma/man/ss.data.pb3.Rd | 87
SixSigma-0.8-1/SixSigma/man/ss.data.pb4.Rd | 70
SixSigma-0.8-1/SixSigma/man/ss.data.pc.Rd | 81
SixSigma-0.8-1/SixSigma/man/ss.data.pc.big.Rd | 77
SixSigma-0.8-1/SixSigma/man/ss.data.pc.r.Rd | 77
SixSigma-0.8-1/SixSigma/man/ss.data.rr.Rd | 81
SixSigma-0.8-1/SixSigma/man/ss.data.strings.Rd | 79
SixSigma-0.8-1/SixSigma/man/ss.heli.Rd | 83
SixSigma-0.8-1/SixSigma/man/ss.lf.Rd | 101
SixSigma-0.8-1/SixSigma/man/ss.lfa.Rd | 152 -
SixSigma-0.8-1/SixSigma/man/ss.pMap.Rd | 224 +-
SixSigma-0.8-1/SixSigma/man/ss.rr.Rd | 174 -
SixSigma-0.8-1/SixSigma/man/ss.study.ca.Rd | 116 -
SixSigma-0.8-1/SixSigma/tests/run-all.R | 3
SixSigma-0.8-1/SixSigma/vignettes/HelicopterInstructions.Rnw | 2
48 files changed, 2218 insertions(+), 2120 deletions(-)
Title: R & bitcoin integration
Diff between Rbitcoin versions 0.8 dated 2014-01-01 and 0.8.5 dated 2014-03-07
Description: Utilities related to Bitcoin: markets API interface (mtgox,
bitstamp, btce, kraken). Both public and private API calls. Integration of
data structures for all markets. Support HTTP over SSL. Optional print
processing debug messages, error handling. Read Rbitcoin documentation
(command: ?btc) for more information.
Author: Jan Gorecki
Maintainer: Jan Gorecki
DESCRIPTION | 17 -
MD5 | 29 +-
NAMESPACE | 4
NEWS | 13 +
R/Rbitcoin.R | 386 +++++++++++++++++----------------------
R/onLoad.R |only
data/api.dict.rda |binary
man/Rbitcoin.Rd | 86 ++++++--
man/api.dict.Rd | 23 +-
man/blockchain.api.query.Rd | 29 +-
man/market.api.process.Rd | 90 +++++----
man/market.api.query.Rd | 88 +++-----
man/market.api.query.bitstamp.Rd | 20 --
man/market.api.query.btce.Rd | 20 --
man/market.api.query.kraken.Rd | 20 --
man/market.api.query.mtgox.Rd | 24 +-
16 files changed, 422 insertions(+), 427 deletions(-)
Title: Interface to the bird-watching datasets at proyectoavis.com
Diff between rAvis versions 0.1 dated 2014-01-17 and 0.1.1 dated 2014-03-07
Description: Interface to the proyectoavis.com bird observations records
database. It provides means to download datasets filtered by species, order,
family, and several other criteria. Provides also basic functionality to
plot exploratory maps of the datasets.
Author: Javier González Hernández
Maintainer: Sara Varela González
DESCRIPTION | 12 +++---
MD5 | 24 ++++++------
R/data.R | 10 +++++
R/loginFunctions.R | 5 +-
R/setupFunctions.R | 2 -
data/datalist | 1
data/ravis_credentials.rda |only
man/rAvis.Rd | 12 +++---
man/ravis_credentials.Rd |only
tests/test-all.R | 2 -
tests/testthat/test-avisContributorAggregatedObservations.R | 17 ++++----
tests/testthat/test-avisContributorsSummary.R | 9 ++--
tests/testthat/test-avisQuery.R | 12 ++----
tests/testthat/test-avisQuerySpecies.R | 11 ++---
14 files changed, 64 insertions(+), 53 deletions(-)
Title: Julian Miscellaneous Function
Diff between Jmisc versions 0.3 dated 2012-05-06 and 0.3.1 dated 2014-03-07
Description: Some handy function in R
Author: TszKin Julian Chan
Maintainer: TszKin Julian Chan
Jmisc-0.3.1/Jmisc/ChangeLog | 4 -
Jmisc-0.3.1/Jmisc/DESCRIPTION | 9 +-
Jmisc-0.3.1/Jmisc/MD5 | 44 ++++++-----
Jmisc-0.3.1/Jmisc/NAMESPACE | 32 ++++----
Jmisc-0.3.1/Jmisc/R/generateSignificance.r | 1
Jmisc-0.3.1/Jmisc/R/splitBy.r | 28 +++++--
Jmisc-0.3.1/Jmisc/R/tic.r |only
Jmisc-0.3.1/Jmisc/R/toc.r |only
Jmisc-0.3.1/Jmisc/man/JBTest.Rd | 64 ++++++++---------
Jmisc-0.3.1/Jmisc/man/addCol.Rd | 58 +++++++--------
Jmisc-0.3.1/Jmisc/man/charPlus.Rd | 48 ++++++-------
Jmisc-0.3.1/Jmisc/man/demean.Rd | 46 ++++++------
Jmisc-0.3.1/Jmisc/man/evalFunctionOnList.Rd | 81 ++++++++++------------
Jmisc-0.3.1/Jmisc/man/generateSignificance.Rd | 60 ++++++++--------
Jmisc-0.3.1/Jmisc/man/label_both_parsed_recode.Rd | 52 +++++++-------
Jmisc-0.3.1/Jmisc/man/oapply.Rd | 74 ++++++++++----------
Jmisc-0.3.1/Jmisc/man/packages.Rd | 54 +++++++-------
Jmisc-0.3.1/Jmisc/man/recode.Rd | 56 +++++++--------
Jmisc-0.3.1/Jmisc/man/repCol.Rd | 50 ++++++-------
Jmisc-0.3.1/Jmisc/man/repRow.Rd | 50 ++++++-------
Jmisc-0.3.1/Jmisc/man/shift.Rd | 50 ++++++-------
Jmisc-0.3.1/Jmisc/man/sourceAll.Rd | 52 +++++++-------
Jmisc-0.3.1/Jmisc/man/splitBy.Rd | 63 ++++++++---------
Jmisc-0.3.1/Jmisc/man/timer.Rd |only
Jmisc-0.3/Jmisc/inst |only
25 files changed, 496 insertions(+), 480 deletions(-)
Title: Hierarchical and grouped time series
Diff between hts versions 4.0 dated 2014-02-10 and 4.1 dated 2014-03-07
Description: Methods for analysing and forecasting hierarchical and grouped time series.
Author: Rob J Hyndman, Earo Wang and Alan Lee with contributions from Roman A Ahmed and Han Lin Shang to earlier versions of the package
Maintainer: Rob J Hyndman
ChangeLog | 12 ++++++++----
DESCRIPTION | 6 +++---
MD5 | 18 +++++++++---------
R/combineg.R | 2 +-
R/forecast.gts.R | 7 ++++---
R/topdown.R | 4 ++--
demo/htseg2.R | 1 -
demo/infantgts.R | 2 +-
inst/doc/hts.pdf |binary
man/forecast.gts.Rd | 2 +-
10 files changed, 29 insertions(+), 25 deletions(-)
Title: Analysis of evolutionary diversification
Diff between geiger versions 2.0 dated 2014-02-10 and 2.0.1 dated 2014-03-07
Description: macroevolutionary simulation and parameter estimation
related to diversification from comparative
phylogenetic data
Author: Luke Harmon
Maintainer: Matt Pennell
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
R/utilities-misc.R | 5 +++--
3 files changed, 9 insertions(+), 8 deletions(-)
Title: Find the maximum likelihood estimator of the shape constrained
hazard baseline and the effect parameters in the Cox
proportional hazards model
Diff between CPHshape versions 1.0 dated 2012-03-13 and 1.0.1 dated 2014-03-07
Description: This package computes the maximum likelihood estimator (MLE) of the shape-constrained hazard baseline and the effect parameters in the Cox proportional hazards model under IID sampling. We assume that the data are continuous and allow for right censoring. The function 'find.shapeMLE' allows for four different shape constraints: increasing, decreasing, unimodal, and u-shaped.
Author: Rihong Hui and Hanna Jankowski
Maintainer: Hanna Jankowski
CPHshape-1.0.1/CPHshape/DESCRIPTION | 15 +++++----------
CPHshape-1.0.1/CPHshape/MD5 | 2 +-
CPHshape-1.0/CPHshape/.Rapp.history |only
3 files changed, 6 insertions(+), 11 deletions(-)