Title: R Interface to the Protocol Buffers API
Diff between RProtoBuf versions 0.4.0 dated 2014-01-20 and 0.4.1 dated 2014-03-25
Description: Protocol Buffers are a way of encoding structured data in an
efficient yet extensible format. Google uses Protocol Buffers for almost all
of its internal RPC protocols and file formats. Additional
documentation is available in the arXiv.org preprint "RProtoBuf:
Efficient Cross-Language Data Serialization in R" by Eddelbuettel,
Stokely, and Ooms (2014) http://arxiv.org/abs/1401.7372
Author: Romain Francois, Dirk Eddelbuettel, Murray Stokely and Jeroen Ooms
Maintainer: Dirk Eddelbuettel
ChangeLog | 40 ++++++++++++++++++++++++++++++-
DESCRIPTION | 16 +++++++-----
MD5 | 37 ++++++++++++++---------------
R/00classes.R | 11 ++++++--
build/vignette.rds |binary
configure | 47 ++++++++++++++++++++++++++++---------
inst/CITATION |only
inst/NEWS.Rd | 14 +++++++++++
inst/doc/RProtoBuf-intro.R | 9 +++++++
inst/doc/RProtoBuf-intro.Rnw | 28 ++++++++++++++++++++++
inst/doc/RProtoBuf-intro.pdf |binary
inst/doc/RProtoBuf-quickref.pdf |binary
inst/doc/RProtoBuf-unitTests.pdf |binary
inst/unitTests/data/unittest.proto | 17 +++++++------
inst/unitTests/runit.enums.R | 16 ++++++++++--
inst/unitTests/runit.int64.R | 5 +++
inst/unitTests/runit.messages.R | 5 +++
src/DescriptorPoolLookup.cpp | 13 ++++++++--
src/rprotobuf.cpp | 32 +++++++++++++++++++++++++
vignettes/RProtoBuf-intro.Rnw | 28 ++++++++++++++++++++++
20 files changed, 265 insertions(+), 53 deletions(-)
Title: Companion Animal Population Management
Diff between capm versions 0.3 dated 2014-02-23 and 0.4 dated 2014-03-25
Description: Provides functions for quantitative companion animal population
management.
Author: Oswaldo Santos [aut, cre],
Marcos Amaku [ctb],
Fernando Ferreira [ctb]
Maintainer: Oswaldo Santos
capm-0.3/capm/inst/extdata/santos.qpj |only
capm-0.4/capm/DESCRIPTION | 8 ++--
capm-0.4/capm/MD5 | 44 +++++++++++------------
capm-0.4/capm/NEWS | 29 +++++++++++++++
capm-0.4/capm/R/Calculate2StageSampleSize.R | 4 +-
capm-0.4/capm/R/CalculatePopChange.R | 2 -
capm-0.4/capm/R/PlotPopPyramid.R | 12 ++++--
capm-0.4/capm/R/capm-package.R | 4 +-
capm-0.4/capm/README.md | 19 +++++----
capm-0.4/capm/data/pilot.rda |binary
capm-0.4/capm/data/psu.ssu.rda |binary
capm-0.4/capm/data/survey.data.rda |binary
capm-0.4/capm/inst/CITATION |only
capm-0.4/capm/inst/extdata/santos.dbf |binary
capm-0.4/capm/inst/extdata/santos.prj | 2 -
capm-0.4/capm/inst/extdata/santos.shp |binary
capm-0.4/capm/inst/extdata/santos.shx |binary
capm-0.4/capm/inst/shinyApps/SolveIASA/server.R | 1
capm-0.4/capm/inst/shinyApps/SurveyAnalysis/ui.R | 2 -
capm-0.4/capm/man/CalculatePopChange.Rd | 3 +
capm-0.4/capm/man/PlotPopPyramid.Rd | 2 -
capm-0.4/capm/man/capm-package.Rd | 2 -
capm-0.4/capm/man/pilot.Rd | 4 +-
capm-0.4/capm/man/survey.data.Rd | 22 ++++++-----
24 files changed, 100 insertions(+), 60 deletions(-)
Title: Bayesian Variable selection in Linear Models
Diff between BayesVarSel versions 1.5 dated 2014-03-20 and 1.5.1 dated 2014-03-25
Description: Within the context of the linear regression model, this package provides tools for the analysis of the variable selection problem from a Bayesian perspective. The default implementation takes advantage of a closed-form expression for the posterior probabilities that the prior proposed in Bayarri, Berger, Forte and Garcia-Donato (2012) produces. Alternatively, other priors, like Zellner (1986) g-prior, Zellner-Siow (1980,1984) or Liang, Paulo, Molina, Clyde and Berger (2008) can be used. BayesVarSel allows the calculations to be performed either exactly (sequential or parallel computation) or heuristically, using a Gibbs sampling algorithm studied in Garcia-Donato and Martinez-Beneito (2013).
Author: Gonzalo Garcia-Donato and Anabel Forte
Maintainer: Anabel Forte
DESCRIPTION | 6 +++---
MD5 | 7 ++++---
src/mainGibbs.c | 32 +++++++++++++++++++++++++-------
src/mainSingle.c |only
src/priorprob.c | 2 +-
5 files changed, 33 insertions(+), 14 deletions(-)
Title: R functions for Generalized Simulated Annealing
Diff between GenSA versions 1.1.3 dated 2013-01-23 and 1.1.4 dated 2014-03-25
Description: This package searches for global minimum of a very complex non-linear objective function with a very large number of optima.
Author: Sylvain Gubian, Yang Xiang, Brian Suomela, Julia Hoeng, PMP SA.
Maintainer: Sylvain Gubian
GenSA-1.1.3/GenSA/LICENSE |only
GenSA-1.1.4/GenSA/DESCRIPTION | 13 ++++++-------
GenSA-1.1.4/GenSA/MD5 | 15 +++++++--------
GenSA-1.1.4/GenSA/NEWS | 7 +++++++
GenSA-1.1.4/GenSA/inst/CITATION | 20 ++++++++++----------
GenSA-1.1.4/GenSA/man/GenSA-package.Rd | 2 +-
GenSA-1.1.4/GenSA/man/GenSA.Rd | 2 +-
GenSA-1.1.4/GenSA/src/Engine.cpp | 7 +++++++
GenSA-1.1.4/GenSA/src/Engine.h | 1 +
9 files changed, 40 insertions(+), 27 deletions(-)
Title: Interface to Geometry Engine - Open Source (GEOS)
Diff between rgeos versions 0.3-3 dated 2014-02-13 and 0.3-4 dated 2014-03-25
Description: Interface to Geometry Engine - Open Source (GEOS) using the C API for topology operations on geometries. The GEOS library is external to the package, and, when installing the package from source, must be correctly installed first. Windows and Mac Intel OS X binaries are provided on CRAN.
Author: Roger Bivand [cre, aut],
Colin Rundel [aut],
Edzer Pebesma [ctb],
Karl Ove Hufthammer [ctb]
Maintainer: Roger Bivand
ChangeLog | 13 ++++++++++
DESCRIPTION | 8 +++---
MD5 | 26 +++++++++++---------
NAMESPACE | 2 -
R/Rgpc_funcs.R | 2 -
R/rgeos_topology.R | 12 +++++++++
inst/ChangeLog | 13 ++++++++++
inst/SVN_VERSION | 2 -
inst/wkts/sppsp.wkt |only
man/topo-unary-gDelaunayTriangulation.Rd | 2 -
man/topo-unary-gNode.Rd |only
man/topo-unary-gPolygonize.Rd | 4 +--
src/init.c | 3 ++
src/rgeos.h | 6 +++-
src/rgeos_topology.c | 39 +++++++++++++++++++++++++++++++
15 files changed, 109 insertions(+), 23 deletions(-)
Title: combined miRNA- and mRNA-testing
Diff between miRtest versions 1.5 dated 2013-03-21 and 1.6 dated 2014-03-25
Description: combined miRNA- and mRNA-testing
Author: Stephan Artmann, Klaus Jung, Tim Beissbarth
Maintainer: Stephan Artmann
DESCRIPTION | 17 ++++++++++-------
MD5 | 13 ++++++++-----
NAMESPACE | 6 ++++++
R/miRtest.R | 10 +++++-----
build |only
inst/doc/miRtest.R |only
inst/doc/miRtest.pdf |binary
man/miRtest.Rd | 4 ++--
vignettes |only
9 files changed, 31 insertions(+), 19 deletions(-)
Title: K-means for joint Longitudinal data
Diff between kml3d versions 2.1.2 dated 2012-11-19 and 2.2 dated 2014-03-25
Description: KmL3D is an implementation of k-means specifically design
to cluster joint trajectories (longitudinal data on
several variable-trajectories).
Like KmL, it provides facilities to deal with missing
value, compute several quality criterion (Calinski and Harabatz,
Ray and Turie, Davies and Bouldin, BIC,...) and propose a graphical
interface for choosing the 'best' number of clusters. In addition, the 3D graph
representing the mean joint-trajectories of each cluster can be exported through
LaTeX in a 3D dynamic rotating PDF graph.
Author: Christophe Genolini [cre, aut],
Bruno Falissard [ctb],
Jean-Baptiste Pingault [ctb]
Maintainer: Christophe Genolini
kml3d-2.1.2/kml3d/NAMESPACE3 |only
kml3d-2.1.2/kml3d/kml3d-Ex.R |only
kml3d-2.1.2/kml3d/main.R |only
kml3d-2.1.2/kml3d/tests/ex1.Rdata |only
kml3d-2.1.2/kml3d/tests/example.csv |only
kml3d-2.1.2/kml3d/tests/main.r |only
kml3d-2.1.2/kml3d/todo.txt |only
kml3d-2.2/kml3d/DESCRIPTION | 40 +++++-----
kml3d-2.2/kml3d/MD5 | 27 ++-----
kml3d-2.2/kml3d/NAMESPACE | 2
kml3d-2.2/kml3d/R/clusterLongData3d.r | 75 ++++++++++++++------
kml3d-2.2/kml3d/R/kml3d.r | 1
kml3d-2.2/kml3d/man/ClusterLongData3d-class.Rd | 7 +
kml3d-2.2/kml3d/man/generateArtificialLongData3d.Rd | 6 +
kml3d-2.2/kml3d/man/kml3d-package.Rd | 6 -
kml3d-2.2/kml3d/man/plot.Rd | 3
kml3d-2.2/kml3d/man/plot3d.Rd | 9 +-
kml3d-2.2/kml3d/tests/CLD3.Rdata |binary
18 files changed, 109 insertions(+), 67 deletions(-)
Title: Coarsened Exact Matching
Diff between cem versions 1.1.8 dated 2014-03-19 and 1.1.10 dated 2014-03-25
Description: Implementation of the Coarsened Exact Matching algorithm
Author: Stefano M. Iacus
Maintainer: Stefano M. Iacus
DESCRIPTION | 6 +++---
MD5 | 4 ++--
R/cem.main.R | 16 +++++++++-------
3 files changed, 14 insertions(+), 12 deletions(-)
Title: Visualization methods for the raster package
Diff between rasterVis versions 0.27 dated 2014-01-23 and 0.28 dated 2014-03-25
Description: The raster package defines classes and methods for spatial raster data access and manipulation. The rasterVis package complements raster providing a set of methods for enhanced visualization and interaction.
Author: Oscar Perpinan Lamigueiro [cre, aut],
Robert Hijmans [aut]
Maintainer: Oscar Perpinan Lamigueiro
ChangeLog | 30 +++++++++---------
DESCRIPTION | 8 ++--
MD5 | 20 ++++++------
R/interactRaster.R | 4 +-
R/latticeRaster.R | 48 ++++++++++++++++++----------
R/levelplot.R | 56 ++++++++++++++++-----------------
R/streamplot.R | 36 +++++++++++----------
R/vectorplot.R | 78 +++++++++++++++++++++++++++++++++++++++++++++--
man/chooseRegion.Rd | 2 -
man/levelplot-methods.Rd | 16 ++++-----
man/vectorplot.Rd | 74 +++++++++++++++++++++++++++++++++++++++-----
11 files changed, 257 insertions(+), 115 deletions(-)
Title: High dimensional multiclass classification using sparse group
lasso
Diff between msgl versions 0.1.7 dated 2014-02-19 and 2.0.123.0 dated 2014-03-25
Description: Sparse group lasso multiclass classification, suitable for
high dimensional problems with many classes. Fast algorithm for
solving the multinomial sparse group lasso convex optimization
problem. This package apply template metaprogramming
techniques, therefore -- when compiling the package from source
-- a high level of optimization is needed to gain full speed
(e.g. for the GCC compiler use -O3). Use of multiple processors
for cross validation and subsampling is supported through
OpenMP. The Armadillo C++ library is used as the primary linear
algebra engine.
Author: Martin Vincent
Maintainer: Martin Vincent
msgl-0.1.7/msgl/R/msgl_multinomial.R |only
msgl-0.1.7/msgl/man/sgl.algorithm.config.Rd |only
msgl-0.1.7/msgl/man/sgl.standard.config.Rd |only
msgl-0.1.7/msgl/src/include |only
msgl-0.1.7/msgl/tests/msgl_verbose_test_1.R |only
msgl-0.1.7/msgl/tests/msgl_verbose_test_2.R |only
msgl-0.1.7/msgl/tests/msgl_verbose_test_3.R |only
msgl-2.0.123.0/msgl/DESCRIPTION | 15 +--
msgl-2.0.123.0/msgl/MD5 | 98 ++++++++------------
msgl-2.0.123.0/msgl/NAMESPACE | 23 ++--
msgl-2.0.123.0/msgl/R/msgl_config.R |only
msgl-2.0.123.0/msgl/R/msgl_cv.R |only
msgl-2.0.123.0/msgl/R/msgl_fit.R |only
msgl-2.0.123.0/msgl/R/msgl_navigate.R |only
msgl-2.0.123.0/msgl/R/msgl_predict.R |only
msgl-2.0.123.0/msgl/R/msgl_subsampling.R |only
msgl-2.0.123.0/msgl/data/SimData.RData |binary
msgl-2.0.123.0/msgl/inst/CITATION | 12 +-
msgl-2.0.123.0/msgl/inst/NEWS.Rd |only
msgl-2.0.123.0/msgl/man/Err.msgl.Rd |only
msgl-2.0.123.0/msgl/man/coef.msgl.Rd |only
msgl-2.0.123.0/msgl/man/features.msgl.Rd |only
msgl-2.0.123.0/msgl/man/models.msgl.Rd |only
msgl-2.0.123.0/msgl/man/msgl.Rd | 77 ++++++++++-----
msgl-2.0.123.0/msgl/man/msgl.algorithm.config.Rd |only
msgl-2.0.123.0/msgl/man/msgl.cv.Rd | 59 ++++++------
msgl-2.0.123.0/msgl/man/msgl.lambda.seq.Rd | 23 ++--
msgl-2.0.123.0/msgl/man/msgl.standard.config.Rd |only
msgl-2.0.123.0/msgl/man/msgl.subsampling.Rd | 54 ++++++-----
msgl-2.0.123.0/msgl/man/nmod.msgl.Rd |only
msgl-2.0.123.0/msgl/man/parameters.msgl.Rd |only
msgl-2.0.123.0/msgl/man/predict.msgl.Rd | 25 ++++-
msgl-2.0.123.0/msgl/man/print.msgl.Rd |only
msgl-2.0.123.0/msgl/man/sim.data.Rd | 2
msgl-2.0.123.0/msgl/src/Makevars | 4
msgl-2.0.123.0/msgl/src/multinomial_loss.h |only
msgl-2.0.123.0/msgl/src/multinomial_response.h |only
msgl-2.0.123.0/msgl/src/rmsgl.cpp | 111 ++++++++++++++++++-----
msgl-2.0.123.0/msgl/tests/msgl_cv_test_1.R | 9 +
msgl-2.0.123.0/msgl/tests/msgl_cv_test_2.R | 9 +
msgl-2.0.123.0/msgl/tests/msgl_cv_test_3.R | 7 +
msgl-2.0.123.0/msgl/tests/msgl_cv_test_4.R | 9 +
msgl-2.0.123.0/msgl/tests/msgl_predict_test_1.R | 5 -
msgl-2.0.123.0/msgl/tests/msgl_predict_test_2.R |only
msgl-2.0.123.0/msgl/tests/msgl_test_1.R | 2
msgl-2.0.123.0/msgl/tests/msgl_test_2.R | 6 -
msgl-2.0.123.0/msgl/tests/msgl_test_3.R | 11 ++
msgl-2.0.123.0/msgl/tests/msgl_test_4.R | 2
48 files changed, 355 insertions(+), 208 deletions(-)
Title: Machine coded genetic algorithms for real-valued optimization
problems
Diff between mcga versions 2.0.7 dated 2013-04-04 and 2.0.9 dated 2014-03-25
Description: Machine coded genetic algorithm (MCGA) is a fast tool for
real-valued optimization problems. It uses the byte
representation of variables rather than real-values. It
performs the classical crossover operations (uniform) on these
byte representations. Mutation operator is also similar to
classical mutation operator, which is to say, it changes a
randomly selected byte value of a chromosome by +1 or -1 with
probability 1/2. In MCGAs there is no need for
encoding-decoding process and the classical operators are
directly applicable on real-values. It is fast and can handle a
wide range of a search space with high precision. Using a
256-unary alphabet is the main disadvantage of this algorithm
but a moderate size population is convenient for many problems.
Package also includes multi_mcga function for multi objective
optimization problems. This function sorts the chromosomes
using their ranks calculated from the non-dominated sorting
algorithm.
Author: Mehmet Hakan Satman
Maintainer: Mehmet Hakan Satman
DESCRIPTION | 8 +++----
MD5 | 10 ++++-----
man/mcga-package.Rd | 24 +++++++++++++++--------
man/mcga.Rd | 27 +++++++++++++++++---------
man/multi_mcga.Rd | 54 ++++++++++++++++++++++++++--------------------------
src/rwrapper.c | 10 +++++----
6 files changed, 77 insertions(+), 56 deletions(-)
Title: GAMLSS Additive.
Diff between gamlss.add versions 4.2-7 dated 2014-01-11 and 4.2-8 dated 2014-03-25
Description: Extra additive terms for GAMLSS models.
Author: Mikis Stasinopoulos
Maintainer: Mikis Stasinopoulos
DESCRIPTION | 12 ++++++------
MD5 | 16 +++++++++-------
NAMESPACE | 8 +++++---
R/fk-gamlss.R | 13 +++++++------
R/gam_gamlss_21-8-12.R | 8 ++++----
R/la-gamlss-3-1-12.R | 2 +-
R/nnet_gamlss.R | 2 +-
R/tree_gamlss.R |only
man/ga.Rd | 2 +-
man/tr.Rd |only
10 files changed, 34 insertions(+), 29 deletions(-)
Title: Visualising bipartite networks and calculating some (ecological)
indices.
Diff between bipartite versions 2.03 dated 2014-01-11 and 2.04 dated 2014-03-25
Description: Bipartite provides functions to visualise webs and calculate a series of indices commonly used to describe pattern in ecological webs. It focuses on webs consisting of only two trophic levels, e.g. pollination webs or predator-prey-webs. Visualisation is important to get an idea of what we are actually looking at, while the indices summarise different aspects of the webs topology.
Author: Carsten F. Dormann, Jochen Fruend and Bernd Gruber, with additional code from Mariano Devoto, Jose Iriondo, Rouven Strauss and Diego Vazquez, also based on C-code developed by Nils Bluethgen, Aaron Clauset/Rouven Strauss and Miguel Rodriguez-Girones.
Maintainer: Carsten F. Dormann
bipartite-2.03/bipartite/R/nested.r |only
bipartite-2.04/bipartite/DESCRIPTION | 8
bipartite-2.04/bipartite/MD5 | 24 -
bipartite-2.04/bipartite/R/C.score.R | 4
bipartite-2.04/bipartite/R/computeModules.R | 20
bipartite-2.04/bipartite/R/nested.R |only
bipartite-2.04/bipartite/R/nestedrank.R | 52 +-
bipartite-2.04/bipartite/R/networklevel.R | 14
bipartite-2.04/bipartite/R/slope.bipartite.R | 4
bipartite-2.04/bipartite/R/specieslevel.R | 54 +-
bipartite-2.04/bipartite/inst/doc/Dormann2008Rnews.pdf |binary
bipartite-2.04/bipartite/man/bipartite-package.Rd | 12
bipartite-2.04/bipartite/man/specieslevel.Rd | 356 ++++++++---------
bipartite-2.04/bipartite/src/identifyModules.cc | 47 +-
14 files changed, 309 insertions(+), 286 deletions(-)
Title: Statistics with Interactive R Learning
Diff between swirl versions 2.1.1 dated 2014-02-28 and 2.2.0 dated 2014-03-25
Description: swirl is a platform for learning (and teaching) statistics and R
simultaneously and interactively.
Author: Nick Carchedi [aut, cre],
Bill Bauer [aut],
Gina Grdina [aut],
Sean Kross [aut]
Maintainer: Nick Carchedi
swirl-2.1.1/swirl/R/author_lesson.R |only
swirl-2.1.1/swirl/inst/Courses/Data_Analysis |only
swirl-2.1.1/swirl/inst/Courses/Intro_to_R |only
swirl-2.1.1/swirl/inst/Courses/Mathematical_Biostatistics_Boot_Camp |only
swirl-2.1.1/swirl/inst/Courses/Open_Intro |only
swirl-2.1.1/swirl/inst/Courses/Test_Lessons |only
swirl-2.1.1/swirl/inst/templates |only
swirl-2.1.1/swirl/man/author_lesson.Rd |only
swirl-2.2.0/swirl/DESCRIPTION | 30 +-
swirl-2.2.0/swirl/MD5 | 124 +++-------
swirl-2.2.0/swirl/NAMESPACE | 12
swirl-2.2.0/swirl/R/answerTests.R | 12
swirl-2.2.0/swirl/R/answerTests2.R | 106 +++++++-
swirl-2.2.0/swirl/R/courseraCheck.R |only
swirl-2.2.0/swirl/R/install_course.R | 109 +++++---
swirl-2.2.0/swirl/R/instructionSet.R | 14 -
swirl-2.2.0/swirl/R/menu.R | 97 ++++++-
swirl-2.2.0/swirl/R/parse_content.R | 6
swirl-2.2.0/swirl/R/progress.R | 2
swirl-2.2.0/swirl/R/rmd2df.R | 59 ++++
swirl-2.2.0/swirl/R/swirl.R | 52 +++-
swirl-2.2.0/swirl/R/utilities.R | 54 ++++
swirl-2.2.0/swirl/README.md | 2
swirl-2.2.0/swirl/inst/Courses/suggested_courses.yaml |only
swirl-2.2.0/swirl/man/bye.Rd | 11
swirl-2.2.0/swirl/man/expr_creates_var.Rd |only
swirl-2.2.0/swirl/man/expr_identical_to.Rd |only
swirl-2.2.0/swirl/man/expr_is_a.Rd |only
swirl-2.2.0/swirl/man/expr_uses_func.Rd |only
swirl-2.2.0/swirl/man/func_of_newvar_equals.Rd |only
swirl-2.2.0/swirl/man/info.Rd | 6
swirl-2.2.0/swirl/man/install_course_directory.Rd | 3
swirl-2.2.0/swirl/man/install_course_dropbox.Rd | 10
swirl-2.2.0/swirl/man/install_course_github.Rd | 14 -
swirl-2.2.0/swirl/man/install_course_google_drive.Rd | 10
swirl-2.2.0/swirl/man/install_course_url.Rd | 7
swirl-2.2.0/swirl/man/install_course_zip.Rd | 7
swirl-2.2.0/swirl/man/install_from_swirl.Rd | 17 -
swirl-2.2.0/swirl/man/nxt.Rd | 5
swirl-2.2.0/swirl/man/omnitest.Rd | 21 -
swirl-2.2.0/swirl/man/play.Rd | 9
swirl-2.2.0/swirl/man/skip.Rd | 7
swirl-2.2.0/swirl/man/swirl.Rd | 67 ++---
swirl-2.2.0/swirl/man/uninstall_course.Rd | 3
swirl-2.2.0/swirl/man/val_has_length.Rd |only
swirl-2.2.0/swirl/man/val_matches.Rd |only
swirl-2.2.0/swirl/man/var_is_a.Rd |only
swirl-2.2.0/swirl/man/zip_course.Rd | 10
swirl-2.2.0/swirl/tests/testthat/test-play.R | 18 -
49 files changed, 570 insertions(+), 334 deletions(-)
Title: Bridging the gap between qualitative data and quantitative
analysis
Diff between qdap versions 1.3.2 dated 2014-03-17 and 1.3.3 dated 2014-03-25
Description: This package automates many of the tasks associated with
quantitative discourse analysis of transcripts containing discourse
including frequency counts of sentence types, words, sentences, turns of
talk, syllables and other assorted analysis tasks. The package
provides parsing tools for preparing transcript data. Many functions
enable the user to aggregate data by any number of grouping variables
providing analysis and seamless integration with other R packages that
undertake higher level analysis and visualization of text. This affords
the user a more efficient and targeted analysis. qdap is designed for
transcript analysis, however, many functions are applicable to other areas
of Text Mining/Natural Language Processing.
Author: Bryan Goodrich [ctb],
Dason Kurkiewicz [ctb],
Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker
DESCRIPTION | 6
MD5 | 111 ++++++-----
NAMESPACE | 23 ++
NEWS | 49 +++++
R/Animate.R |only
R/Search.R | 2
R/Title.R |only
R/all_words.R | 22 ++
R/automated_readability_index.R | 4
R/bracketX.R | 2
R/counts.R | 7
R/dir_map.R | 4
R/discourse_map.R |only
R/exclude.R | 13 +
R/freq_terms.R | 24 ++
R/hash.R | 2
R/is.global.R |only
R/lookup.R | 6
R/multigsub.R | 2
R/new_project.R | 257 +++++++++++++++++----------
R/paste2.R | 8
R/phrase_net.R |only
R/polarity.R | 3
R/preprocessed.R | 7
R/proportions.R | 7
R/qheat.R | 2
R/repo2github.R |only
R/rm_stopwords.R | 21 +-
R/synonyms.R | 104 ++++++++--
R/visual.R |only
R/word_list.R | 78 ++++++++
inst/CITATION | 4
inst/doc/qdap_vignette.html | 14 -
inst/doc/tm_package_compatibility.pdf |binary
inst/extdata/docs/PROJECT_WORKFLOW_GUIDE.pdf |binary
inst/extdata/docs/extra_functions.R | 12 -
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man/Animate.discourse_map.Rd |only
man/Filter.Rd | 48 ++++-
man/Search.Rd | 2
man/Title.Rd |only
man/bracketX.Rd | 2
man/counts.Rd | 9
man/dir_map.Rd | 4
man/discourse_map.Rd |only
man/exclude.Rd | 8
man/freq_terms.Rd | 24 ++
man/hash.Rd | 2
man/is.global.Rd |only
man/lookup.Rd | 16 -
man/new_project.Rd | 99 ++++++----
man/phrase_net.Rd |only
man/plot.animated_discourse_map.Rd |only
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man/plot.readability_score.Rd | 2
man/preprocessed.Rd | 7
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man/print.phrase_net.Rd |only
man/proportions.Rd | 8
man/qheat.Rd | 2
man/repo2github.Rd |only
man/rm_stopwords.Rd | 11 +
man/synonyms.Rd | 46 ++++
man/visual.Rd |only
man/visual.discourse_map.Rd |only
67 files changed, 798 insertions(+), 290 deletions(-)
Title: Procedures for Psychological, Psychometric, and Personality
Research
Diff between psych versions 1.4.2.3 dated 2014-02-04 and 1.4.3 dated 2014-03-25
Description: A number of routines for personality, psychometrics and experimental psychology. Functions are primarily for scale construction using factor analysis, cluster analysis and reliability analysis, although others provide basic descriptive statistics. Item Response Theory is done using factor analysis of tetrachoric and polychoric correlations. Functions for simulating particular item and test structures are included. Several functions serve as a useful front end for structural equation modeling. Graphical displays of path diagrams, factor analysis and structural equation models are created using basic graphics. Some of the functions are written to support a book on psychometrics as well as publications in personality research. For more information, see the personality-project.org/r webpage.
Author: William Revelle
Maintainer: William Revelle
DESCRIPTION | 8 -
MD5 | 159 +++++++++++++++++++-------------------
NAMESPACE | 6 +
R/VSS.R | 36 ++++++++
R/cor.ci.R | 32 +++++--
R/cor.plot.R | 5 -
R/corr.test.R | 57 +++++++++++--
R/densityBy.r |only
R/error.bars.R | 40 ++++++++-
R/error.bars.by.R | 43 ++++++----
R/fa.parallel.R | 65 ++++++++++-----
R/fa.parallel.poly.R | 10 +-
R/factor.stats.R | 23 ++++-
R/misc.R | 184 +++++++++++++++++++++++++++++++++++++++++----
R/partial.r.R | 7 +
R/print.psych.R | 30 +++++++
R/print.psych.vss.R | 34 +++++++-
R/score.items.R | 1
build/vignette.rds |binary
data/Bechtoldt.1.rda |binary
data/Bechtoldt.2.rda |binary
data/Bechtoldt.rda |binary
data/Dwyer.rda |binary
data/Gleser.rda |binary
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data/ability.rda |binary
data/affect.rda |binary
data/bfi.dictionary.rda |binary
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data/msq.rda |binary
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data/peas.rda |binary
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data/vegetables.rda |binary
data/withinBetween.rda |binary
inst/CITATION | 8 -
inst/NEWS.Rd | 37 +++++++--
inst/doc/overview.R | 165 ++++++++++++++++++++++------------------
inst/doc/overview.Rnw | 53 +++++++++++-
inst/doc/overview.pdf |binary
inst/doc/psych_for_sem.pdf |binary
man/00.psych-package.Rd | 4
man/VSS.Rd | 18 +++-
man/ability.Rd | 2
man/alpha.Rd | 3
man/best.scales.Rd |only
man/corr.test.Rd | 24 ++++-
man/densityBy.Rd |only
man/error.bars.Rd | 7 +
man/error.bars.by.Rd | 9 +-
man/fa.Rd | 32 +++++--
man/fa.parallel.Rd | 8 -
man/fa.sort.Rd | 12 ++
man/iqitems.Rd | 2
man/misc.Rd | 33 +-------
man/partial.r.Rd | 7 -
man/score.items.Rd | 8 +
vignettes/overview.Rnw | 53 +++++++++++-
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Title: Graphical Independence Networks
Diff between gRain versions 1.2-2 dated 2013-09-15 and 1.2-3 dated 2014-03-25
Description: A package for probability propagation in graphical independence networks, also known as probabilistic expert systems or Bayesian networks.
Author: Søren Højsgaard
Maintainer: Søren Højsgaard
DESCRIPTION | 11 -
MD5 | 27 ++-
NAMESPACE | 8 -
R/CPT-POT-compile.R | 326 +++++++++++++++++++++++++++++++++--------------
R/Finding.R | 13 -
R/GraphAlgo-misc.R | 8 -
R/cptable.R | 69 +++------
R/grain-compile.R | 133 +++++++++++++------
R/propagate.R | 138 ++++++++++---------
R/update.R | 108 +++++++++++----
build/vignette.rds |binary
inst/doc/gRain-intro.pdf |binary
man/compile.grain.Rd | 6
man/internal-gRain.Rd | 7 -
man/update.CPTgrain.Rd |only
15 files changed, 542 insertions(+), 312 deletions(-)
Title: Generalised Additive Models for Location Scale and Shape.
Diff between gamlss versions 4.2-7 dated 2014-01-12 and 4.2-8 dated 2014-03-25
Description: The library for fitting GAMLSS models.
Author: Mikis Stasinopoulos
Maintainer: Mikis Stasinopoulos
gamlss-4.2-7/gamlss/R/pb_19-04-2012.R |only
gamlss-4.2-8/gamlss/DESCRIPTION | 10
gamlss-4.2-8/gamlss/MD5 | 41 -
gamlss-4.2-8/gamlss/NAMESPACE | 1
gamlss-4.2-8/gamlss/R/add.r | 202 +++----
gamlss-4.2-8/gamlss/R/centile-pred.R | 1
gamlss-4.2-8/gamlss/R/cy.R | 755 +++++++++++++--------------
gamlss-4.2-8/gamlss/R/extra.R | 5
gamlss-4.2-8/gamlss/R/gamlss-01-05-13.R | 22
gamlss-4.2-8/gamlss/R/lms-20-6-13.r | 7
gamlss-4.2-8/gamlss/R/pb_03-02-2014.R |only
gamlss-4.2-8/gamlss/R/pbm.R |only
gamlss-4.2-8/gamlss/R/pvc.R | 45 -
gamlss-4.2-8/gamlss/R/random.R | 27
gamlss-4.2-8/gamlss/R/ri.R | 309 +++++------
gamlss-4.2-8/gamlss/R/vcoc-gamlss-03-10-13.R | 10
gamlss-4.2-8/gamlss/inst/doc/NEWS.txt | 18
gamlss-4.2-8/gamlss/man/calibration.Rd | 2
gamlss-4.2-8/gamlss/man/gamlss.Rd | 340 ++++++------
gamlss-4.2-8/gamlss/man/gamlss.ps.Rd | 102 +--
gamlss-4.2-8/gamlss/man/lms.Rd | 2
gamlss-4.2-8/gamlss/man/ps.Rd | 59 +-
gamlss-4.2-8/gamlss/man/ridge.Rd | 142 ++---
23 files changed, 1084 insertions(+), 1016 deletions(-)
Title: Dendrochronology Program Library in R
Diff between dplR versions 1.5.8 dated 2014-01-15 and 1.5.9 dated 2014-03-25
Description: This package contains functions for performing tree-ring
analyses, IO, and graphics.
Author: Andy Bunn [aut, cph, cre, trl], Mikko Korpela [aut, trl], Franco Biondi [aut, cph], Filipe Campelo [aut, cph], Pierre Mérian [aut, cph], Manfred Mudelsee [aut], Fares Qeadan [aut, cph], Michael Schulz [aut], Christian Zang [aut, cph], Jacob Cecile [ctb]
Maintainer: Andy Bunn
ChangeLog | 55 ++++++++++++++++
DESCRIPTION | 8 +-
MD5 | 43 ++++++------
R/exactmean.R | 6 -
R/gini.coef.R | 6 -
R/read.tucson.R | 34 ++++++---
R/rwi.stats.running.R | 20 ++++-
R/sens1.R | 6 -
R/sens2.R | 6 -
R/tbrm.R | 7 --
inst/unitTests/runit.dplR.R | 43 +++++++++++-
inst/unitTests/runit.io.R | 10 ++
src/dplR.c |only
src/dplR.h | 7 ++
src/exactmean.c | 14 ++--
src/exactsum.c | 151 +++++++++++++++++++++-----------------------
src/exactsum.h | 5 +
src/gini.c | 97 +++++++++++-----------------
src/rcompact.c | 1
src/readloop.c | 127 +++++++++++++++++++++++++++++++------
src/redfit.c | 1
src/sens.c | 42 ++++++++----
src/tbrm.c | 89 +++++++++++++++----------
23 files changed, 496 insertions(+), 282 deletions(-)
Title: Data sets from Devore's "Prob and Stat for Eng (7th ed)"
Diff between Devore7 versions 0.7.5 dated 2013-01-31 and 0.7.6 dated 2014-03-25
Description: Data sets and sample analyses from Jay L. Devore (2008),
"Probability and Statistics for Engineering and the Sciences
(7th ed)", Thomson.
Author: Original by Jay L. Devore, modifications by Douglas Bates
Maintainer: John Verzani
DESCRIPTION | 10
MD5 | 795 +++++++++++++++++++++++++--------------------------
NEWS | 4
build |only
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Title: Validation of Clustering Results
Diff between clValid versions 0.6-4 dated 2011-10-18 and 0.6-6 dated 2014-03-25
Description: Statistical and biological validation of clustering results.
Author: Guy Brock
Maintainer: Guy Brock
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clValid-0.6-6/clValid/MD5 | 25 ++---
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clValid-0.6-6/clValid/R/clValid-functions.R | 121 ++++++++++++-------------
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