Title: Fitting Semiparametric Symmetric Regression Models
Diff between ssym versions 1.0 dated 2014-04-02 and 1.1 dated 2014-04-04
Description: This package allows to fit a semiparametric regression model suitable for data set analysis in which the conditional distribution of the response is symmetric and continuous.
Author: Luis Hernando Vanegas
Maintainer: Luis Hernando Vanegas
ssym-1.0/ssym/R/lambda_hat.R |only
ssym-1.0/ssym/man/lambda_hat.Rd |only
ssym-1.1/ssym/DESCRIPTION | 8 ++++----
ssym-1.1/ssym/MD5 | 24 +++++++++++++-----------
ssym-1.1/ssym/NAMESPACE | 2 +-
ssym-1.1/ssym/R/lambda.hat.R |only
ssym-1.1/ssym/R/ssym.l.R | 2 +-
ssym-1.1/ssym/R/ssym.nl.R | 2 +-
ssym-1.1/ssym/data/gdp.rda |only
ssym-1.1/ssym/man/Biaxial.Rd | 2 +-
ssym-1.1/ssym/man/Snacks.Rd | 4 ++--
ssym-1.1/ssym/man/gdp.Rd |only
ssym-1.1/ssym/man/lambda.hat.Rd |only
ssym-1.1/ssym/man/ssym-package.Rd | 19 +++++++++----------
ssym-1.1/ssym/man/ssym.l.Rd | 25 ++++++++++++++++++++++++-
ssym-1.1/ssym/man/ssym.nl.Rd | 2 +-
16 files changed, 57 insertions(+), 33 deletions(-)
Title: R wrapper to the almetrics API platform developed by PLoS
Diff between alm versions 0.1.1 dated 2013-11-01 and 0.1.4 dated 2014-04-04
Description: An R interface to the open source article level metrics API
created by the Public Library of Science (PLOS). A number of publishers are
using the open source app created by PLOS, so you can drop in a different
base URL to the functions in this package to get to not only PLOS data, but
data for Crossref, and more as the open source PLOS software is used.
Obtain rCharts at https://github.com/ramnathv/rCharts.
Author: Scott Chamberlain [aut, cre],
Carl Boettiger [aut],
Karthik Ram [aut],
Fenner Martin [aut]
Maintainer: Scott Chamberlain
alm-0.1.1/alm/inst/doc/vignette.Rmd |only
alm-0.1.1/alm/inst/doc/vignette.pdf |only
alm-0.1.1/alm/inst/ignore |only
alm-0.1.1/alm/inst/stuff |only
alm-0.1.1/alm/inst/tests |only
alm-0.1.1/alm/vignettes/vignette.Rmd |only
alm-0.1.4/alm/DESCRIPTION | 25 +-
alm-0.1.4/alm/MD5 | 237 +++++++++----------
alm-0.1.4/alm/NAMESPACE | 9
alm-0.1.4/alm/NEWS | 19 +
alm-0.1.4/alm/R/alm.R | 17 -
alm-0.1.4/alm/R/almdatepub.R | 26 +-
alm-0.1.4/alm/R/almevents.R | 59 +++-
alm-0.1.4/alm/R/almplot.R | 6
alm-0.1.4/alm/R/almpubmedcentid.R | 14 -
alm-0.1.4/alm/R/almpubmedid.R | 16 -
alm-0.1.4/alm/R/almtitle.R | 17 -
alm-0.1.4/alm/R/almtotals.R | 20 -
alm-0.1.4/alm/R/zzz.R | 7
alm-0.1.4/alm/README.md | 373 +++++++++++++++++++++++++-----
alm-0.1.4/alm/build/vignette.rds |binary
alm-0.1.4/alm/inst/doc/alm_vignette.Rmd |only
alm-0.1.4/alm/inst/doc/alm_vignette.pdf |only
alm-0.1.4/alm/inst/vign |only
alm-0.1.4/alm/man/addmissing.Rd | 13 -
alm-0.1.4/alm/man/alm.Rd | 102 +++-----
alm-0.1.4/alm/man/almcompact.Rd |only
alm-0.1.4/alm/man/almdatepub.Rd | 26 --
alm-0.1.4/alm/man/almdateupdated.Rd | 5
alm-0.1.4/alm/man/almevents.Rd | 109 +++-----
alm-0.1.4/alm/man/almplot.Rd | 27 +-
alm-0.1.4/alm/man/almpubmedcentid.Rd | 23 -
alm-0.1.4/alm/man/almpubmedid.Rd | 22 -
alm-0.1.4/alm/man/almtitle.Rd | 22 -
alm-0.1.4/alm/man/almtotals.Rd | 24 -
alm-0.1.4/alm/man/almupdated.Rd | 6
alm-0.1.4/alm/man/capwords.Rd | 14 -
alm-0.1.4/alm/man/concat_todf.Rd | 12
alm-0.1.4/alm/man/getkey.Rd | 10
alm-0.1.4/alm/man/plot_density.Rd | 36 +-
alm-0.1.4/alm/man/plot_signposts.Rd | 46 +--
alm-0.1.4/alm/man/signposts.Rd | 74 ++---
alm-0.1.4/alm/tests |only
alm-0.1.4/alm/vignettes/alm_vignette.Rmd |only
alm-0.1.4/alm/vignettes/alm_vignette.html |only
alm-0.1.4/alm/vignettes/alm_vignette.md |only
alm-0.1.4/alm/vignettes/figure |only
47 files changed, 832 insertions(+), 584 deletions(-)
Title: Analysis of music and speech
Diff between tuneR versions 1.1 dated 2014-01-09 and 1.2 dated 2014-04-04
Description: Collection of tools to analyze music, extract features
like MFCCs, handling wave files, read mp3, transcription, ...
Also contains functions ported from the rastamat Matlab
package.
Author: Uwe Ligges
Maintainer: Uwe Ligges
DESCRIPTION | 10
MD5 | 16
NAMESPACE | 2
R/Waveforms.R | 21
R/readWave.R | 18
man/Waveforms.Rd | 29 -
src/pulse.c |only
src/pulse.h |only
tests/tuneRTest.R | 70 ++
tests/tuneRTest.Rout.save | 1242 ++++++++++++++++++++++++----------------------
10 files changed, 787 insertions(+), 621 deletions(-)
Title: Signal processing
Diff between signal versions 0.7-3 dated 2013-02-11 and 0.7-4 dated 2014-04-04
Description: A set of signal processing R functions originally written for Matlab/Octave.
Includes filter generation utilities, filtering functions,
resampling routines, and visualization of filter models. It also
includes interpolation functions.
Author: Uwe Ligges [aut, cre] (new maintainer),
Tom Short [aut] (port to R),
Paul Kienzle [aut] (majority of the original sources),
Sarah Schnackenberg [ctb] (various test cases and bug fixes),
David Billinghurst [ctb],
Hans-Werner Borchers [ctb],
Andre Carezia [ctb],
Pascal Dupuis [ctb],
John W. Eaton [ctb],
E. Farhi [ctb],
Kai Habel [ctb],
Kurt Hornik [ctb],
Sebastian Krey [ctb],
Bill Lash [ctb],
Friedrich Leisch [ctb],
Olaf Mersmann [ctb],
Paulo Neis [ctb],
Jaakko Ruohio [ctb],
Julius O. Smith III [ctb],
Doug Stewart [ctb],
Andreas Weingessel [ctb]
Maintainer: Uwe Ligges
signal-0.7-3/signal/inst/LICENSE |only
signal-0.7-4/signal/ChangeLog | 7 +
signal-0.7-4/signal/DESCRIPTION | 91 +++++++++++++----------
signal-0.7-4/signal/MD5 | 21 +++--
signal-0.7-4/signal/NAMESPACE | 2
signal-0.7-4/signal/R/buttord.R | 21 +++++
signal-0.7-4/signal/R/filter.R | 4 -
signal-0.7-4/signal/R/levinson.R | 6 -
signal-0.7-4/signal/inst/COPYRIGHTS |only
signal-0.7-4/signal/man/freqz.Rd | 4 -
signal-0.7-4/signal/tests/TestLevinson.R |only
signal-0.7-4/signal/tests/TestLevinson.Rout.save |only
signal-0.7-4/signal/tests/savedTestLev.Rdata |only
signal-0.7-4/signal/tests/signal.Rout.save | 2
14 files changed, 101 insertions(+), 57 deletions(-)
Title: methods for multigroup data analysis
Diff between multigroup versions 0.1 dated 2014-01-13 and 0.2 dated 2014-04-04
Description: This package includes several methods to study multigroup data,
where the same set of variables are measured on different groups of
individuals.
Author: Aida Eslami, El Mostafa Qannari, Stephanie Bougeard, Gaston Sanchez
Questions and comments go to Aida Eslami
Maintainer: Aida Eslami
DESCRIPTION | 24 ++++++++++-----
MD5 | 72 +++++++++++++++++++++++++++------------------
NAMESPACE | 7 ++++
R/BGC.R | 29 ++++++++++++------
R/DCCSWA.R | 22 ++++++++-----
R/DGPA.R | 28 ++++++++++-------
R/TBWvariance.R | 4 +-
R/Trace.R |only
R/deflation.R | 1
R/iteraite_fun_Iter.R |only
R/loadingsplot.R | 4 +-
R/mbmgPCA.R |only
R/mgPCA.R | 52 ++++++++++++++++++--------------
R/normM.R | 1
R/normv.R | 1
R/plot.mg.R | 8 +++--
R/prepare_data.R |only
R/project.R |only
R/scoreplot.R | 7 ++--
R/select_initial_Iter.R |only
R/summarize.R | 8 ++---
R/transfer_Group.R |only
data |only
man/BGC.Rd | 59 ++++++++++++++++++++----------------
man/DCCSWA.Rd | 57 +++++++++++++++++++----------------
man/DGPA.Rd | 56 +++++++++++++++++++----------------
man/DSTATIS.Rd | 57 ++++++++++++++++++-----------------
man/FCPCA.Rd | 48 +++++++++++++++---------------
man/TBWvariance.Rd | 39 ++++++++++++------------
man/Trace.Rd |only
man/deflation.Rd | 7 ++--
man/iteraite_fun_Iter.Rd |only
man/loadingsplot.Rd | 9 +++--
man/mbmgPCA.Rd |only
man/mgPCA.Rd | 71 ++++++++++++++++++++++++--------------------
man/normM.Rd | 7 ++--
man/normv.Rd | 7 ++--
man/plot.mg.Rd | 11 +++---
man/prepare_data.Rd |only
man/project.Rd |only
man/scoreplot.Rd | 10 +++---
man/select_initial_Iter.Rd |only
man/summarize.Rd | 22 ++++++-------
man/transfer_Group.Rd |only
man/wine.Rd |only
45 files changed, 412 insertions(+), 316 deletions(-)
Title: EasyABC: performing efficient approximate Bayesian computation
sampling schemes
Diff between EasyABC versions 1.3 dated 2014-02-27 and 1.3.1 dated 2014-04-04
Description: The package EasyABC enables to launch a series of simulations of a computer code from the R platform, and to retrieve the simulation outputs in an appropriate format for post-processing treatments. Four sequential sampling schemes and three coupled-to-MCMC schemes are implemented.
Author: Franck Jabot, Thierry Faure, Nicolas Dumoullin
Maintainer: Nicolas Dumoulin
CHANGELOG | 5 +++++
DESCRIPTION | 12 ++++++------
MD5 | 22 +++++++++++-----------
R/ABC_mcmc.R | 3 +++
R/ABC_rejection.R | 3 +++
R/ABC_sequential.R | 3 +++
R/EasyABC-internal.R | 42 +++++++++++++++++++++++++++++++-----------
inst/doc/EasyABC.pdf |binary
man/ABC_mcmc.Rd | 2 +-
man/ABC_rejection.Rd | 2 +-
man/ABC_sequential.Rd | 2 +-
man/EasyABC-package.Rd | 4 ++--
12 files changed, 67 insertions(+), 33 deletions(-)
Title: Spatial areal unit modelling
Diff between CARBayes versions 2.0 dated 2013-12-04 and 3.0 dated 2014-04-04
Description: This package implements Bayesian hierarchical spatial areal unit models. In such models the spatial correlation is modelled by a set of random effects, which are assigned a conditional autoregressive (CAR) prior distribution. Examples of the models included are the BYM model as well as a recently developed localised spatial smoothing model.The creation of this package was supported by the Economic and Social Research Council (ESRC) grant RES-000-22-4256.
Author: Duncan Lee
Maintainer: Duncan Lee
CARBayes-2.0/CARBayes/man/binomial.bymCAR.Rd |only
CARBayes-2.0/CARBayes/man/binomial.dissimilarityCAR.Rd |only
CARBayes-2.0/CARBayes/man/binomial.iarCAR.Rd |only
CARBayes-2.0/CARBayes/man/binomial.independent.Rd |only
CARBayes-2.0/CARBayes/man/binomial.lerouxCAR.Rd |only
CARBayes-2.0/CARBayes/man/binomial.properCAR.Rd |only
CARBayes-2.0/CARBayes/man/gaussian.bymCAR.Rd |only
CARBayes-2.0/CARBayes/man/gaussian.dissimilarityCAR.Rd |only
CARBayes-2.0/CARBayes/man/gaussian.iarCAR.Rd |only
CARBayes-2.0/CARBayes/man/gaussian.independent.Rd |only
CARBayes-2.0/CARBayes/man/gaussian.lerouxCAR.Rd |only
CARBayes-2.0/CARBayes/man/gaussian.properCAR.Rd |only
CARBayes-2.0/CARBayes/man/poisson.bymCAR.Rd |only
CARBayes-2.0/CARBayes/man/poisson.dissimilarityCAR.Rd |only
CARBayes-2.0/CARBayes/man/poisson.iarCAR.Rd |only
CARBayes-2.0/CARBayes/man/poisson.independent.Rd |only
CARBayes-2.0/CARBayes/man/poisson.lerouxCAR.Rd |only
CARBayes-2.0/CARBayes/man/poisson.properCAR.Rd |only
CARBayes-3.0/CARBayes/DESCRIPTION | 8
CARBayes-3.0/CARBayes/MD5 | 94 ++++-----
CARBayes-3.0/CARBayes/NAMESPACE | 29 ---
CARBayes-3.0/CARBayes/R/RcppExports.R | 15 +
CARBayes-3.0/CARBayes/R/binomial.bymCAR.R | 148 +++++++--------
CARBayes-3.0/CARBayes/R/binomial.clusterCAR.R |only
CARBayes-3.0/CARBayes/R/binomial.dissimilarityCAR.R | 144 +++++++--------
CARBayes-3.0/CARBayes/R/binomial.iarCAR.R | 138 +++++++-------
CARBayes-3.0/CARBayes/R/binomial.independent.R | 134 ++++++--------
CARBayes-3.0/CARBayes/R/binomial.lerouxCAR.R | 142 +++++++--------
CARBayes-3.0/CARBayes/R/binomial.properCAR.R | 144 +++++++--------
CARBayes-3.0/CARBayes/R/bymCAR.re.R |only
CARBayes-3.0/CARBayes/R/clusterCAR.re.R |only
CARBayes-3.0/CARBayes/R/dissimilarityCAR.re.R |only
CARBayes-3.0/CARBayes/R/gaussian.bymCAR.R | 160 +++++++----------
CARBayes-3.0/CARBayes/R/gaussian.clusterCAR.R |only
CARBayes-3.0/CARBayes/R/gaussian.dissimilarityCAR.R | 153 +++++++---------
CARBayes-3.0/CARBayes/R/gaussian.iarCAR.R | 142 ++++++---------
CARBayes-3.0/CARBayes/R/gaussian.independent.R | 144 +++++++--------
CARBayes-3.0/CARBayes/R/gaussian.lerouxCAR.R | 154 +++++++---------
CARBayes-3.0/CARBayes/R/gaussian.properCAR.R | 154 +++++++---------
CARBayes-3.0/CARBayes/R/iarCAR.re.R |only
CARBayes-3.0/CARBayes/R/independent.re.R |only
CARBayes-3.0/CARBayes/R/lerouxCAR.re.R |only
CARBayes-3.0/CARBayes/R/poisson.bymCAR.R | 150 +++++++--------
CARBayes-3.0/CARBayes/R/poisson.clusterCAR.R |only
CARBayes-3.0/CARBayes/R/poisson.dissimilarityCAR.R | 149 +++++++--------
CARBayes-3.0/CARBayes/R/poisson.iarCAR.R | 137 +++++++-------
CARBayes-3.0/CARBayes/R/poisson.independent.R | 137 +++++++-------
CARBayes-3.0/CARBayes/R/poisson.lerouxCAR.R | 147 +++++++--------
CARBayes-3.0/CARBayes/R/poisson.properCAR.R | 144 +++++++--------
CARBayes-3.0/CARBayes/R/print.carbayes.R | 2
CARBayes-3.0/CARBayes/R/properCAR.re.R |only
CARBayes-3.0/CARBayes/data/dbf.rda |binary
CARBayes-3.0/CARBayes/data/housedata.rda |binary
CARBayes-3.0/CARBayes/data/respdata.rda |binary
CARBayes-3.0/CARBayes/data/shp.rda |binary
CARBayes-3.0/CARBayes/inst/doc |only
CARBayes-3.0/CARBayes/man/CARBayes-package.Rd | 32 ++-
CARBayes-3.0/CARBayes/man/bymCAR.re.Rd |only
CARBayes-3.0/CARBayes/man/clusterCAR.re.Rd |only
CARBayes-3.0/CARBayes/man/dissimilarityCAR.re.Rd |only
CARBayes-3.0/CARBayes/man/iarCAR.re.Rd |only
CARBayes-3.0/CARBayes/man/independent.re.Rd |only
CARBayes-3.0/CARBayes/man/lerouxCAR.re.Rd |only
CARBayes-3.0/CARBayes/man/properCAR.re.Rd |only
CARBayes-3.0/CARBayes/src/RcppExports.cpp | 62 ++++++
CARBayes-3.0/CARBayes/src/cppfunctions.cpp | 139 +++++++++++++-
66 files changed, 1504 insertions(+), 1498 deletions(-)
Title: Probabilistic Population Projection
Diff between bayesPop versions 4.2-2 dated 2013-12-03 and 4.3-0 dated 2014-04-04
Description: The package allows to generate population projections for all countries of the world using several probabilistic components, such as total fertility rate (TFR) and life expectancy.
Author: Hana Sevcikova, Adrian Raftery
Maintainer: Hana Sevcikova
ChangeLog | 4 ++++
DESCRIPTION | 8 ++++----
MD5 | 14 +++++++-------
R/aggregate.R | 14 +++++++-------
R/predict.pop.R | 2 +-
man/bayesPop-package.Rd | 4 ++--
man/pop.aggregate.Rd | 8 ++++----
tests/test_functions.R | 16 ++++++++++++++++
8 files changed, 45 insertions(+), 25 deletions(-)
Title: Miscellaneous functions for finance / credit risk analysts
Diff between optiRum versions 0.31 dated 2014-03-24 and 0.32 dated 2014-04-04
Description: This packages fills the gaps credit analysts and loan modellers at
Optimum Credit identify in the existing R code body.
It allows for the production of documentation with less coding,
replicates a number of Microsoft Excel functions useful for
modelling loans (without rounding), and other helpful functions
for producing charts and tables. It also has some additional scales for
use, including a GBP scale
Author: Stephanie Locke [aut, cre]
Maintainer: Stephanie Locke
DESCRIPTION | 6 +++---
MD5 | 14 +++++++++-----
NEWS | 8 ++++++++
R/theme_optimum.R | 1 -
tests/testthat/datatabletest.Rnw | 8 +++++---
tests/testthat/datatabletest.pdf |binary
tests/testthat/figure |only
tests/testthat/tempunnamed-chunk-2.pdf |only
tests/testthat/unnamed-chunk-2.pdf |only
9 files changed, 25 insertions(+), 12 deletions(-)
Title: Moment and Inverse Moment Bayes factors
Diff between mombf versions 1.5.4 dated 2013-08-23 and 1.5.7 dated 2014-04-04
Description: This package performs model selection based on non-local priors, including MOM, eMOM and iMOM priors. Routines are provided to compute Bayes factors, marginal densities and to perform variable selection in regression setups. Routines to evaluate prior densities, distribution functions, quantiles and modes are included.
Author: David Rossell, John D. Cook, Donatello Telesca, P. Roebuck
Maintainer: David Rossell
mombf-1.5.4/mombf/vignettes/auto |only
mombf-1.5.7/mombf/ChangeLog | 13 +
mombf-1.5.7/mombf/DESCRIPTION | 8 -
mombf-1.5.7/mombf/MD5 | 30 ++-
mombf-1.5.7/mombf/NAMESPACE | 2
mombf-1.5.7/mombf/R/margpimom.R | 84 +++++++++-
mombf-1.5.7/mombf/R/modelSelection.R | 8 -
mombf-1.5.7/mombf/build |only
mombf-1.5.7/mombf/data/hald.rda |binary
mombf-1.5.7/mombf/inst/doc/mombf.pdf |binary
mombf-1.5.7/mombf/man/modelSelection.Rd | 77 ++++------
mombf-1.5.7/mombf/src/Polynomial.cpp |only
mombf-1.5.7/mombf/src/Polynomial.h |only
mombf-1.5.7/mombf/src/PolynomialRootFinder.cpp |only
mombf-1.5.7/mombf/src/PolynomialRootFinder.h |only
mombf-1.5.7/mombf/src/cstat.cpp | 12 -
mombf-1.5.7/mombf/src/modelSel.cpp | 191 +++++++++++++++++++++----
mombf-1.5.7/mombf/src/modelSel.h | 1
mombf-1.5.7/mombf/src/modselIntegrals.cpp | 4
19 files changed, 321 insertions(+), 109 deletions(-)
Title: R interface to tslib (a time series library in c++)
Diff between fts versions 0.9.2 dated 2014-03-19 and 0.9.9 dated 2014-04-04
Description: fast operations for time series objects
Author: Whit Armstrong
Maintainer: Whit Armstrong
fts-0.9.2/fts/src/helpers/R.transform.template.hpp |only
fts-0.9.2/fts/src/helpers/R.window.template.hpp |only
fts-0.9.9/fts/DESCRIPTION | 6
fts-0.9.9/fts/MD5 | 40 ++-
fts-0.9.9/fts/R/fts.R | 16 -
fts-0.9.9/fts/man/as.fts.Rd | 2
fts-0.9.9/fts/src/diff.cpp | 15 -
fts-0.9.9/fts/src/helpers/R.tseries.data.backend.hpp | 108 +++++-----
fts-0.9.9/fts/src/helpers/Rsexp.allocator.templates.hpp | 21 +
fts-0.9.9/fts/src/helpers/Rtype.hpp | 1
fts-0.9.9/fts/src/helpers/freq.transform.template.hpp |only
fts-0.9.9/fts/src/helpers/fts.factory.hpp | 13 -
fts-0.9.9/fts/src/helpers/time.window.template.hpp |only
fts-0.9.9/fts/src/helpers/transform.template.hpp |only
fts-0.9.9/fts/src/helpers/window.intersection.template.hpp |only
fts-0.9.9/fts/src/helpers/window.template.hpp |only
fts-0.9.9/fts/src/interface.cpp | 11 -
fts-0.9.9/fts/src/lag.cpp | 19 -
fts-0.9.9/fts/src/lead.cpp | 15 -
fts-0.9.9/fts/src/pad.cpp | 17 -
fts-0.9.9/fts/src/tslib/tslib/range.specifier/rangeSpecifier.hpp | 10
fts-0.9.9/fts/src/tslib/tslib/tseries.hpp | 47 ----
fts-0.9.9/fts/src/tslib/tslib/tseries.io.hpp |only
fts-0.9.9/fts/src/tslib/tslib/utils/breaks.hpp | 2
fts-0.9.9/fts/src/tslib/tslib/vector.transform/fill.bwd.hpp | 1
25 files changed, 159 insertions(+), 185 deletions(-)
Title: MCMC Generalised Linear Mixed Models
Diff between MCMCglmm versions 2.18 dated 2014-03-18 and 2.19 dated 2014-04-04
Description: MCMC Generalised Linear Mixed Models
Author: Jarrod Hadfield
Maintainer: Jarrod Hadfield
MCMCglmm-2.18/MCMCglmm/src/General.h |only
MCMCglmm-2.18/MCMCglmm/src/cs_cbind.h |only
MCMCglmm-2.18/MCMCglmm/src/cs_cov2cor.h |only
MCMCglmm-2.18/MCMCglmm/src/cs_dcmvnorm.h |only
MCMCglmm-2.18/MCMCglmm/src/cs_directsum.h |only
MCMCglmm-2.18/MCMCglmm/src/cs_dmvnorm.h |only
MCMCglmm-2.18/MCMCglmm/src/cs_inv.h |only
MCMCglmm-2.18/MCMCglmm/src/cs_kroneckerA.h |only
MCMCglmm-2.18/MCMCglmm/src/cs_kroneckerH.c |only
MCMCglmm-2.18/MCMCglmm/src/cs_kroneckerH.h |only
MCMCglmm-2.18/MCMCglmm/src/cs_kroneckerI.h |only
MCMCglmm-2.18/MCMCglmm/src/cs_kroneckerImii.c |only
MCMCglmm-2.18/MCMCglmm/src/cs_kroneckerImii.h |only
MCMCglmm-2.18/MCMCglmm/src/cs_kroneckerImiiupdate.c |only
MCMCglmm-2.18/MCMCglmm/src/cs_omega.h |only
MCMCglmm-2.18/MCMCglmm/src/cs_rCinvwishart.h |only
MCMCglmm-2.18/MCMCglmm/src/cs_rR.h |only
MCMCglmm-2.18/MCMCglmm/src/cs_rinvwishart.h |only
MCMCglmm-2.18/MCMCglmm/src/cs_rwishart.h |only
MCMCglmm-2.18/MCMCglmm/src/cs_sortdv.h |only
MCMCglmm-2.18/MCMCglmm/src/cs_tmultiplyupdate.c |only
MCMCglmm-2.18/MCMCglmm/src/cs_tmultiplyupdate.h |only
MCMCglmm-2.18/MCMCglmm/src/dcmvnormR.h |only
MCMCglmm-2.18/MCMCglmm/src/dcutopints.c |only
MCMCglmm-2.18/MCMCglmm/src/dcutpoints.h |only
MCMCglmm-2.18/MCMCglmm/src/inverseA.h |only
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MCMCglmm-2.18/MCMCglmm/src/lpzF.h |only
MCMCglmm-2.18/MCMCglmm/src/pcmvnorm.h |only
MCMCglmm-2.18/MCMCglmm/src/rIW.h |only
MCMCglmm-2.18/MCMCglmm/src/rbv.h |only
MCMCglmm-2.18/MCMCglmm/src/rtcmvnorm.h |only
MCMCglmm-2.18/MCMCglmm/src/rtcmvnormR.h |only
MCMCglmm-2.18/MCMCglmm/src/rtnorm.h |only
MCMCglmm-2.18/MCMCglmm/src/rtnormR.h |only
MCMCglmm-2.18/MCMCglmm/src/test.h |only
MCMCglmm-2.19/MCMCglmm/DESCRIPTION | 8
MCMCglmm-2.19/MCMCglmm/MD5 | 113 ++++-------
MCMCglmm-2.19/MCMCglmm/R/MCMCglmm.R | 10 -
MCMCglmm-2.19/MCMCglmm/inst/doc/CourseNotes.pdf |binary
MCMCglmm-2.19/MCMCglmm/src/MCMCglmm.cc | 10 -
MCMCglmm-2.19/MCMCglmm/src/MCMCglmm.h | 189 ++++++--------------
MCMCglmm-2.19/MCMCglmm/src/MCMCglmmcc.h |only
MCMCglmm-2.19/MCMCglmm/src/cs_cbind.c | 2
MCMCglmm-2.19/MCMCglmm/src/cs_cov2cor.c | 2
MCMCglmm-2.19/MCMCglmm/src/cs_dcmvnorm.c | 4
MCMCglmm-2.19/MCMCglmm/src/cs_directsum.c | 2
MCMCglmm-2.19/MCMCglmm/src/cs_directsumupdate.c | 2
MCMCglmm-2.19/MCMCglmm/src/cs_dmvnorm.c | 4
MCMCglmm-2.19/MCMCglmm/src/cs_initialize.c |only
MCMCglmm-2.19/MCMCglmm/src/cs_inv.c | 2
MCMCglmm-2.19/MCMCglmm/src/cs_invR.c | 2
MCMCglmm-2.19/MCMCglmm/src/cs_kroneckerA.c | 2
MCMCglmm-2.19/MCMCglmm/src/cs_kroneckerAupdate.c | 2
MCMCglmm-2.19/MCMCglmm/src/cs_kroneckerD.c |only
MCMCglmm-2.19/MCMCglmm/src/cs_kroneckerDupdate.c |only
MCMCglmm-2.19/MCMCglmm/src/cs_kroneckerI.c | 2
MCMCglmm-2.19/MCMCglmm/src/cs_kroneckerIadd.c | 2
MCMCglmm-2.19/MCMCglmm/src/cs_kroneckerIupdate.c | 2
MCMCglmm-2.19/MCMCglmm/src/cs_omega.c | 2
MCMCglmm-2.19/MCMCglmm/src/cs_omegaupdate.c | 2
MCMCglmm-2.19/MCMCglmm/src/cs_rCinvwishart.c | 2
MCMCglmm-2.19/MCMCglmm/src/cs_rR.c | 2
MCMCglmm-2.19/MCMCglmm/src/cs_rinvwishart.c | 2
MCMCglmm-2.19/MCMCglmm/src/cs_rwishart.c | 2
MCMCglmm-2.19/MCMCglmm/src/cs_sortdv.c | 2
MCMCglmm-2.19/MCMCglmm/src/dcmvnormR.cc | 2
MCMCglmm-2.19/MCMCglmm/src/dcutpoints.c |only
MCMCglmm-2.19/MCMCglmm/src/inverseA.cc | 3
MCMCglmm-2.19/MCMCglmm/src/pcmvnorm.c | 4
MCMCglmm-2.19/MCMCglmm/src/rIW.cc | 2
MCMCglmm-2.19/MCMCglmm/src/rbv.cc | 3
MCMCglmm-2.19/MCMCglmm/src/rtcmvnorm.c | 2
MCMCglmm-2.19/MCMCglmm/src/rtcmvnormR.cc | 2
MCMCglmm-2.19/MCMCglmm/src/rtnorm.c | 2
MCMCglmm-2.19/MCMCglmm/src/rtnormR.cc | 2
MCMCglmm-2.19/MCMCglmm/vignettes/Figures/TEST.R | 146 +++++++++++++--
MCMCglmm-2.19/MCMCglmm/vignettes/Figures/buildCN.R | 4
78 files changed, 276 insertions(+), 270 deletions(-)
Title: Clustering of variables around Latent Variables
Diff between ClustVarLV versions 1.1 dated 2013-12-12 and 1.2 dated 2014-04-04
Description: This package provides a set of functions that allows us to cluster a set of variables
around Latent Variables. Each group is associated with a latent variable.
External variables measured on the same observations or/and additional information on the
variables can be taken into account.
Author: Evelyne Vigneau, Mingkun Chen
Maintainer: Evelyne Vigneau
DESCRIPTION | 8 ++++----
MD5 | 12 +++++++-----
NAMESPACE | 1 +
R/CLV_kmeans.R | 39 +++++++++++++++++++--------------------
R/descrip_gp.R | 21 ++++++++++++++-------
R/gpmb_on_pc.R | 13 +++++++++++--
data/authen_NMR.rda |only
man/authen_NMR.Rd |only
8 files changed, 56 insertions(+), 38 deletions(-)
Title: Command line option parser.
Diff between optparse versions 1.0.2 dated 2013-08-26 and 1.2.0 dated 2014-04-04
Description: A command line parser inspired by Python's 'optparse' library to
be used with Rscript to write "#!" shebang scripts that accept short and
long flag/options.
Author: Trevor L Davis. Some documentation and examples ported from Allen Day's
getopt package. Some documentation from the optparse Python module by the
Python Software Foundation. Contributions from Steve Lianoglou, Jim
Nikelski, and Kirill Müller.
Maintainer: Trevor L Davis
optparse-1.0.2/optparse/inst/tests |only
optparse-1.2.0/optparse/COPYING |only
optparse-1.2.0/optparse/DESCRIPTION | 18 +-
optparse-1.2.0/optparse/MD5 | 25 +--
optparse-1.2.0/optparse/NEWS | 20 ++
optparse-1.2.0/optparse/R/optparse.R | 178 ++++++++++++------------
optparse-1.2.0/optparse/build |only
optparse-1.2.0/optparse/exec/display_file.R | 12 -
optparse-1.2.0/optparse/inst/COPYRIGHTS |only
optparse-1.2.0/optparse/inst/doc/optparse.Rrst | 2
optparse-1.2.0/optparse/inst/doc/optparse.pdf |binary
optparse-1.2.0/optparse/man/add_make_option.Rd | 3
optparse-1.2.0/optparse/man/parse_args.Rd | 32 ++--
optparse-1.2.0/optparse/tests/run-all.R | 3
optparse-1.2.0/optparse/tests/testthat |only
optparse-1.2.0/optparse/vignettes/optparse.Rrst | 2
16 files changed, 159 insertions(+), 136 deletions(-)
Title: Command line optional and positional argument parser.
Diff between argparse versions 0.5.3 dated 2013-08-26 and 1.0.0 dated 2014-04-04
Description: A command line parser to
be used with Rscript to write "#!" shebang scripts that gracefully
accept positional and optional arguments and automatically generate usage.
Author: Trevor L Davis. Ports examples from the argparse Python module by the
Python Software Foundation. Ports examples from the getopt package by Allen
Day.
Maintainer: Trevor L Davis
argparse-0.5.3/argparse/inst/tests |only
argparse-1.0.0/argparse/COPYING |only
argparse-1.0.0/argparse/DESCRIPTION | 14 +-
argparse-1.0.0/argparse/INSTALL | 12 --
argparse-1.0.0/argparse/MD5 | 21 ++--
argparse-1.0.0/argparse/NAMESPACE | 1
argparse-1.0.0/argparse/NEWS | 14 ++
argparse-1.0.0/argparse/R/argparse.R | 128 ++++++--------------------
argparse-1.0.0/argparse/build |only
argparse-1.0.0/argparse/inst/COPYRIGHTS |only
argparse-1.0.0/argparse/inst/doc/argparse.pdf |binary
argparse-1.0.0/argparse/man/ArgumentParser.Rd | 29 ++---
argparse-1.0.0/argparse/tests/run-all.R | 3
argparse-1.0.0/argparse/tests/testthat |only
14 files changed, 81 insertions(+), 141 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-11-20 1.5.5
2013-06-08 1.5.4
2013-05-21 1.5.3
2013-02-08 1.5.2
2013-02-04 1.5.1
Title: Tools for Harnessing MLBAM Gameday data and Visualizing PITCHf/x
Diff between pitchRx versions 1.2 dated 2014-03-12 and 1.3 dated 2014-04-04
Description: With pitchRx, one can easily obtain Major League Baseball Advanced
Media's Gameday data (as well as store it in a remote database). The
Gameday website hosts a wealth of data in XML format, but perhaps most
interesting is PITCHf/x. Among other things, PITCHf/x data can be used to
recreate a baseball's flight path from a pitcher's hand to home plate. With
pitchRx, one can easily create animations and interactive 3D scatterplots
of the baseball's flight path. PITCHf/x data is also commonly used to
generate a static plot of baseball locations at the moment they cross home
plate. These plots, sometimes called strike-zone plots, can also refer to a
plot of event probabilities over the same region. pitchRx provides an easy
and robust way to generate strike-zone plots using the ggplot2 package.
Author: Carson Sievert
Maintainer: Carson Sievert
DESCRIPTION | 8 ++++----
MD5 | 14 +++++++-------
NEWS | 4 ++++
R/scrape.R | 7 +++----
data/fields.rda |binary
data/gids.rda |binary
data/pitches.rda |binary
data/players.rda |binary
8 files changed, 18 insertions(+), 15 deletions(-)
Title: Lattice Graphics
Diff between lattice versions 0.20-27 dated 2014-02-27 and 0.20-29 dated 2014-04-04
Description: Lattice is a powerful and elegant high-level data
visualization system, with an emphasis on multivariate data, that is
sufficient for typical graphics needs, and is also flexible enough
to handle most nonstandard requirements. See ?Lattice for an
introduction.
Author: Deepayan Sarkar
Maintainer: Deepayan Sarkar
lattice-0.20-27/lattice/inst/po/pl_PL |only
lattice-0.20-27/lattice/po/R-pl_PL.po |only
lattice-0.20-29/lattice/DESCRIPTION | 9
lattice-0.20-29/lattice/MD5 | 24 -
lattice-0.20-29/lattice/inst/po/de/LC_MESSAGES/R-lattice.mo |binary
lattice-0.20-29/lattice/inst/po/en@quot/LC_MESSAGES/R-lattice.mo |binary
lattice-0.20-29/lattice/inst/po/fr/LC_MESSAGES/R-lattice.mo |binary
lattice-0.20-29/lattice/inst/po/ko/LC_MESSAGES/R-lattice.mo |binary
lattice-0.20-29/lattice/inst/po/pl |only
lattice-0.20-29/lattice/po/R-de.po | 8
lattice-0.20-29/lattice/po/R-en@quot.po | 8
lattice-0.20-29/lattice/po/R-fr.po | 229 ++++------
lattice-0.20-29/lattice/po/R-ko.po | 37 -
lattice-0.20-29/lattice/po/R-lattice.pot | 6
lattice-0.20-29/lattice/po/R-pl.po |only
15 files changed, 149 insertions(+), 172 deletions(-)
Title: HTTP and WebSocket server library
Diff between httpuv versions 1.2.3 dated 2014-02-18 and 1.3.0 dated 2014-04-04
Description: httpuv provides low-level socket and protocol support for handling
HTTP and WebSocket requests directly from within R. It is primarily
intended as a building block for other packages, rather than making it
particularly easy to create complete web applications using httpuv alone.
httpuv is built on top of the libuv and http-parser C libraries, both of
which were developed by Joyent, Inc. (See LICENSE file for libuv and
http-parser license information.)
Author: RStudio, Inc.
Maintainer: Joe Cheng
DESCRIPTION | 21 ++++---
MD5 | 21 ++++---
NAMESPACE | 4 +
NEWS | 8 ++
R/RcppExports.R | 8 ++
R/httpuv.R | 72 ++++++++++++++++++++++++++
demo/00Index | 1
demo/daemon-echo.R |only
demo/echo.R | 2
man/startDaemonizedServer.Rd |only
man/stopDaemonizedServer.Rd |only
src/RcppExports.cpp | 27 ++++++++++
src/httpuv.cpp | 116 +++++++++++++++++++++++++++++++++++++++++++
13 files changed, 259 insertions(+), 21 deletions(-)
Title: A community modeling foundation for Eco-Hydrology.
Diff between EcoHydRology versions 0.4.11 dated 2013-10-19 and 0.4.12 dated 2014-04-04
Description: This package provides a flexible foundation for scientists,
engineers, and policy makers to base teaching exercises as well as for
more applied use to model complex eco-hydrological interactions.
Author: Fuka DR, Walter MT, Archibald JA, Steenhuis TS, and Easton ZM
Maintainer: Daniel Fuka
DESCRIPTION | 6 +++---
MD5 | 26 +++++++++++++-------------
NAMESPACE | 3 ---
R/NetRad.R | 2 +-
R/PotSolarInst.R | 3 +--
R/Solar.R | 4 ++--
R/swat_objective_function.R | 2 +-
R/swat_objective_function_rch.R | 2 +-
man/ConvertFlowUnits.Rd | 22 ++++++++++++++--------
man/EcoHydRology-package.Rd | 2 +-
man/Lumped_VSA_model.Rd | 8 ++++++++
man/PET_fromTemp.Rd | 7 +++++--
man/SnowMelt.Rd | 6 +++++-
man/slopefactor.Rd | 2 +-
14 files changed, 56 insertions(+), 39 deletions(-)