Title: Weibull Regression for a Right-Censored Endpoint with an
Arbitrarily Censored Covariate
Description: The main function of this package allows estimation of a Weibull Regression for a right-censored endpoint, one arbitrarily censored covariate, and an arbitrary number of non-censored covariates. Additional functions allow to switch between different parametrizations of Weibull regression used by different R functions, inference for the mean difference of two arbitrarily censored Normal samples, and estimation of canonical parameters from censored samples for several distributional assumptions.
Author: Stanislas Hubeaux
Maintainer: Stanislas Hubeaux
Diff between SurvRegCensCov versions 1.1 dated 2014-02-05 and 1.2 dated 2014-04-07
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 4 ++++ R/WeibullReg.R | 4 +--- inst/doc/weibull.pdf |binary man/SurvRegCensCov-package.Rd | 4 ++-- vignettes/refs.bib | 9 +-------- 7 files changed, 18 insertions(+), 23 deletions(-)
More information about SurvRegCensCov at CRAN
Permanent link
Title: Statistical functions for the Delaporte distribution
Description: Provides probability mass, distribution, quantile, random variate generation, and method of moments parameter estimation functions for the Delaporte distribution.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler
Diff between Delaporte versions 2.1-0 dated 2014-04-07 and 2.1-1 dated 2014-04-07
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- inst/NEWS.Rd | 8 ++++++++ man/Delaporte-package.Rd | 4 ++-- man/Delaporte.Rd | 2 +- tests/testthat/test-delap.r | 14 +++++++------- 6 files changed, 27 insertions(+), 19 deletions(-)
Title: Rcpp integration for Armadillo templated linear algebra library
Description: R and Armadillo integration using Rcpp
Armadillo is a templated C++ linear algebra library (by Conrad Sanderson)
that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
A delayed evaluation approach is employed (during compile time) to combine
several operations into one, and to reduce (or eliminate) the need for
temporaries. This is accomplished through recursive templates and template
meta-programming.
This library is useful if C++ has been decided as the language of choice
(due to speed and/or integration capabilities), rather than another language.
The RcppArmadillo package includes the header files from the templated
Armadillo library. Thus users do not need to install Armadillo itself in
order to use RcppArmadillo.
This Armadillo integration provides a nice illustration of the
capabilities of the Rcpp package for seamless R and C++ integration.
Armadillo is licensed under the MPL 2.0, while RcppArmadillo (the Rcpp
bindings/bridge to Armadillo) is licensed under the GNU GPL version 2
or later, as is the rest of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Dirk Eddelbuettel
Diff between RcppArmadillo versions 0.4.100.2.1 dated 2014-03-08 and 0.4.200.0 dated 2014-04-07
ChangeLog | 10 DESCRIPTION | 8 MD5 | 62 +- build/vignette.rds |binary inst/NEWS.Rd | 11 inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-unitTests.pdf |binary inst/include/RcppArmadillo.h | 16 inst/include/armadillo_bits/Base_bones.hpp | 50 +- inst/include/armadillo_bits/Base_meat.hpp | 107 +++-- inst/include/armadillo_bits/arma_version.hpp | 6 inst/include/armadillo_bits/diagmat_proxy.hpp | 23 - inst/include/armadillo_bits/forward_bones.hpp | 2 inst/include/armadillo_bits/glue_relational_bones.hpp | 30 + inst/include/armadillo_bits/glue_relational_meat.hpp | 68 +++ inst/include/armadillo_bits/glue_times_meat.hpp | 316 ++++++++++----- inst/include/armadillo_bits/memory.hpp | 4 inst/include/armadillo_bits/op_all_meat.hpp | 8 inst/include/armadillo_bits/op_any_meat.hpp | 4 inst/include/armadillo_bits/op_find_meat.hpp | 6 inst/include/armadillo_bits/op_inv_bones.hpp | 6 inst/include/armadillo_bits/op_inv_meat.hpp | 57 +- inst/include/armadillo_bits/operator_cube_relational.hpp | 32 + inst/include/armadillo_bits/operator_relational.hpp | 43 +- inst/include/armadillo_bits/restrictors.hpp | 2 inst/include/armadillo_bits/spop_htrans_bones.hpp | 4 inst/include/armadillo_bits/spop_htrans_meat.hpp | 78 +-- inst/include/armadillo_bits/spop_strans_bones.hpp | 12 inst/include/armadillo_bits/spop_strans_meat.hpp | 151 ++++--- inst/include/armadillo_bits/traits.hpp | 2 inst/include/armadillo_bits/typedef_elem_check.hpp | 6 inst/include/armadillo_bits/unwrap.hpp | 260 +++++++++++- 32 files changed, 1026 insertions(+), 358 deletions(-)
Title: popRange: A spatially and temporally explicit forward genetic
simulator
Description: Runs a forward genetic simulator
Author: Kimberly F. McManus
Maintainer: Kimberly F. McManus
Diff between popRange versions 1.1 dated 2014-03-20 and 1.1.1 dated 2014-04-07
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/sim_package.r | 21 +++++++++++---------- man/popRange-package.Rd | 4 ++-- 4 files changed, 20 insertions(+), 19 deletions(-)
Title: Tools to manage a parametric function that describes phenology
Description: Functions to fit and test the phenology of species based on counts.
Author: Marc Girondot
Maintainer: Marc Girondot
Diff between phenology versions 3.62 dated 2014-03-15 and 3.63 dated 2014-04-07
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ NEWS | 8 +++++++- R/add_phenology.R | 24 +++++++++++++----------- R/getTide.R | 10 +++++++--- R/ind_long_lat.R | 33 ++++++++++++++++++--------------- R/phenology-package.R | 4 ++-- R/plot.phenology.R | 4 +--- inst/shiny/server.R | 2 +- man/add_phenology.Rd | 5 ++++- man/getTide.Rd | 4 ++-- man/ind_long_lat.Rd | 12 ++++++------ man/phenology-package.Rd | 4 ++-- 13 files changed, 80 insertions(+), 64 deletions(-)
Title: GUI Tools Made Easy: Interact with Models, Explore Data, Give
Dynamic Presentations
Description: PBS Modelling provides software to facilitate the design,
testing, and operation of computer models. It focuses particularly on
tools that make it easy to construct and edit a customized graphical
user interface (GUI). Although it depends heavily on the R interface
to the Tcl/Tk package, a user does not need to know Tcl/Tk. The
package contains examples that illustrate models built with other R
packages, including PBSmapping, deSolve, PBSddesolve, and BRugs.
It also serves as a convenient prototype for building new R packages,
along with instructions and batch files to facilitate that process.
The R directory '.../library/PBSmodelling/doc' offers a complete user
guide PBSmodelling-UG.pdf. To use this package effectively,
please consult the guide.
Author: Jon T. Schnute
Maintainer: Rowan Haigh
Diff between PBSmodelling versions 2.65.260 dated 2013-04-30 and 2.66.264 dated 2014-04-07
PBSmodelling-2.65.260/PBSmodelling/inst/doc/PBSmodellingIntro.R |only PBSmodelling-2.65.260/PBSmodelling/inst/doc/PBSmodellingIntro.Rnw |only PBSmodelling-2.66.264/PBSmodelling/DESCRIPTION | 45 +- PBSmodelling-2.66.264/PBSmodelling/MD5 | 64 +-- PBSmodelling-2.66.264/PBSmodelling/NAMESPACE | 3 PBSmodelling-2.66.264/PBSmodelling/R/listFuns.r | 56 ++- PBSmodelling-2.66.264/PBSmodelling/R/supportFuns.r | 183 +++++----- PBSmodelling-2.66.264/PBSmodelling/R/zzz.r | 7 PBSmodelling-2.66.264/PBSmodelling/inst/doc/ChangeLog.txt | 18 PBSmodelling-2.66.264/PBSmodelling/inst/doc/DeveloperGuide.pdf |binary PBSmodelling-2.66.264/PBSmodelling/inst/doc/loadCSetup.pdf |binary PBSmodelling-2.66.264/PBSmodelling/inst/examples/CCA.r | 15 PBSmodelling-2.66.264/PBSmodelling/inst/examples/CalcVor.r | 9 PBSmodelling-2.66.264/PBSmodelling/inst/examples/FishRes.r | 50 +- PBSmodelling-2.66.264/PBSmodelling/inst/examples/FishTows.r | 11 PBSmodelling-2.66.264/PBSmodelling/inst/examples/LinReg.r | 6 PBSmodelling-2.66.264/PBSmodelling/inst/examples/LissFig.r | 5 PBSmodelling-2.66.264/PBSmodelling/inst/examples/MarkRec.r | 11 PBSmodelling-2.66.264/PBSmodelling/inst/examples/PopSim.r | 28 - PBSmodelling-2.66.264/PBSmodelling/inst/examples/RanProp.r | 8 PBSmodelling-2.66.264/PBSmodelling/inst/examples/RanVars.r | 8 PBSmodelling-2.66.264/PBSmodelling/inst/examples/SGM.r | 14 PBSmodelling-2.66.264/PBSmodelling/inst/examples/SineNorm.r | 7 PBSmodelling-2.66.264/PBSmodelling/inst/examples/TestFuns.r | 7 PBSmodelling-2.66.264/PBSmodelling/inst/examples/fib.r | 11 PBSmodelling-2.66.264/PBSmodelling/inst/examples/fib2.r | 7 PBSmodelling-2.66.264/PBSmodelling/inst/examples/sudokuSolver.r | 20 - PBSmodelling-2.66.264/PBSmodelling/inst/examples/vonB.r | 6 PBSmodelling-2.66.264/PBSmodelling/inst/examples/ypr.r | 4 PBSmodelling-2.66.264/PBSmodelling/inst/testWidgets/image.r | 1 PBSmodelling-2.66.264/PBSmodelling/inst/testWidgets/image.txt | 2 PBSmodelling-2.66.264/PBSmodelling/man/evalCall.Rd | 22 + PBSmodelling-2.66.264/PBSmodelling/man/openFile.Rd | 5 PBSmodelling-2.66.264/PBSmodelling/man/packList.Rd | 12 34 files changed, 410 insertions(+), 235 deletions(-)
Title: Tools to make developing R code easier
Description: Collection of package development tools
Author: Hadley Wickham [aut, cre],
Winston Chang [aut],
R Core team [ctb] (Some namespace and vignette code extracted from base
R)
Maintainer: Hadley Wickham
Diff between devtools versions 1.4.1 dated 2013-11-27 and 1.5 dated 2014-04-07
DESCRIPTION | 15 +- MD5 | 233 ++++++++++++++++++----------------- NAMESPACE | 14 +- R/build-ignore.R |only R/build.r | 35 +++-- R/check-cran.r | 27 +++- R/check-doc.r | 4 R/check.r | 20 --- R/create.r | 10 - R/dev-help.r | 106 +++++++++++++++ R/document.r | 48 +------ R/imports-env.r | 3 R/install-bitbucket.r | 2 R/install-github.r | 155 ++++++++++++++++------- R/install-url.r | 2 R/install.r | 51 ++++--- R/load.r | 10 - R/namespace-env.r | 18 +- R/parent-envs.r | 2 R/release.r | 48 +++++-- R/rstudio.R |only R/rtools.r | 4 R/run-example.r | 6 R/run-source.r | 2 R/shims.r | 111 +++++++++------- R/test.r | 93 ++++++++++++- R/travis.R |only R/utils.r | 10 + R/with.r | 6 R/zzz.r | 6 README.md | 46 +++--- inst/templates/packagename-package.r | 2 inst/templates/testthat.R |only inst/templates/travis.yml |only man/add_build_ignore.Rd |only man/add_rstudio_project.Rd |only man/add_test_infrastructure.Rd |only man/add_travis.Rd |only man/as.envlist.Rd | 3 man/as.package.Rd | 10 + man/bash.Rd | 5 man/build.Rd | 51 +++---- man/build_github_devtools.Rd | 29 +--- man/build_vignettes.Rd | 22 +-- man/build_win.Rd | 38 +++-- man/check.Rd | 141 +++++++++------------ man/check_cran.Rd | 55 +++----- man/check_dep_version.Rd | 12 - man/check_doc.Rd | 18 +- man/clean_dll.Rd | 5 man/clean_source.Rd | 16 +- man/clean_vignettes.Rd | 10 - man/compile_dll.Rd | 22 +-- man/compiler_flags.Rd | 20 +-- man/cran_env_vars.Rd | 12 - man/create.Rd | 25 ++- man/create_description.Rd | 17 +- man/dev_example.Rd | 4 man/dev_help.Rd | 19 +- man/dev_meta.Rd | 6 man/dev_mode.Rd | 20 +-- man/dev_packages.Rd | 1 man/devtest.Rd | 7 - man/devtools.Rd | 57 ++++---- man/document.Rd | 22 +-- man/eval_clean.Rd | 13 - man/find_rtools.Rd | 28 ++-- man/git_path.Rd | 4 man/github_pat.Rd |only man/has_devel.Rd | 5 man/has_tests.Rd | 1 man/help.Rd |only man/imports_env.Rd | 20 +-- man/inst.Rd | 12 - man/install.Rd | 116 ++++++++--------- man/install_bitbucket.Rd | 37 ++--- man/install_deps.Rd | 19 +- man/install_git.Rd | 41 ++---- man/install_git_single.Rd | 29 +--- man/install_github.Rd | 70 ++++++---- man/install_gitorious.Rd | 27 +--- man/install_local.Rd | 15 +- man/install_url.Rd | 45 +++--- man/install_version.Rd | 84 ++++++------ man/is.package.Rd | 1 man/load_all.Rd | 128 +++++++++---------- man/load_code.Rd | 10 - man/load_data.Rd | 5 man/load_dll.Rd | 5 man/load_imports.Rd | 8 - man/loaded_packages.Rd | 1 man/missing_s3.Rd | 8 - man/ns_env.Rd | 20 +-- man/on_path.Rd | 6 man/parenvs.Rd | 15 +- man/parse_deps.Rd | 8 - man/parse_ns_file.Rd | 5 man/path.Rd | 11 - man/pkg_env.Rd | 32 ++-- man/print.envlist.Rd | 13 + man/r_env_vars.Rd | 10 - man/release.Rd | 45 +++--- man/reload.Rd | 19 +- man/revdep.Rd | 32 ++-- man/run_examples.Rd | 48 +++---- man/run_pkg_hook.Rd | 8 - man/show_news.Rd | 11 - man/source_gist.Rd | 30 ++-- man/source_url.Rd | 33 ++-- man/system.file.Rd |only man/test.Rd | 27 ++-- man/unload.Rd | 26 +-- man/wd.Rd | 9 - man/with_debug.Rd | 21 +-- man/with_something.Rd | 45 +++--- tests/testthat/test-github.r | 30 ++++ tests/testthat/test-help.r |only tests/testthat/test-load-hooks.r | 6 tests/testthat/test-shim.r | 55 ++++---- tests/testthat/test-with.r | 10 + tests/testthat/testHelp |only tests/testthat/testShim/NAMESPACE | 2 tests/testthat/testShim/R/a.r | 11 - 123 files changed, 1695 insertions(+), 1361 deletions(-)
Title: Fisher-Wright Population Simulation
Description: Simulates a population under the Fisher-Wright model with a one-step neutral mutation process (stepwise mutation model, logistic mutation model and exponential mutation model supported). The population sizes are random Poisson distributed and different kinds of population growth are supported. For the stepwise mutation model, it is possible to specify locus and direction specific mutation rate (in terms of upwards and downwards mutation rate). Intermediate generations can be saved in order to study e.g. drift.
Author: Mikkel Meyer Andersen and Poul Svante Eriksen
Maintainer: Mikkel Meyer Andersen
Diff between fwsim versions 0.2-6 dated 2014-03-04 and 0.3 dated 2014-04-07
fwsim-0.2-6/fwsim/src/clean.c |only fwsim-0.2-6/fwsim/src/clean.h |only fwsim-0.2-6/fwsim/src/fwsim.c |only fwsim-0.2-6/fwsim/src/fwsim.h |only fwsim-0.2-6/fwsim/src/hap.c |only fwsim-0.2-6/fwsim/src/hap.h |only fwsim-0.2-6/fwsim/src/kdtree.c |only fwsim-0.2-6/fwsim/src/kdtree.h |only fwsim-0.2-6/fwsim/src/mutation.c |only fwsim-0.2-6/fwsim/src/mutation.h |only fwsim-0.2-6/fwsim/src/print.c |only fwsim-0.2-6/fwsim/src/rand.c |only fwsim-0.2-6/fwsim/src/rand.h |only fwsim-0.2-6/fwsim/src/sim.c |only fwsim-0.2-6/fwsim/src/sim.h |only fwsim-0.2-6/fwsim/src/tree-to-list.c |only fwsim-0.2-6/fwsim/src/tree-to-list.h |only fwsim-0.3/fwsim/DESCRIPTION | 14 +- fwsim-0.3/fwsim/MD5 | 46 +++--- fwsim-0.3/fwsim/NAMESPACE | 15 ++ fwsim-0.3/fwsim/NEWS | 5 fwsim-0.3/fwsim/R/RcppExports.R |only fwsim-0.3/fwsim/R/fwsim.R | 228 ++++++++++++++++++++++----------- fwsim-0.3/fwsim/R/init_mutmodel.R |only fwsim-0.3/fwsim/R/mutmodel.R |only fwsim-0.3/fwsim/R/plot.R |only fwsim-0.3/fwsim/R/print.R |only fwsim-0.3/fwsim/R/summary.R |only fwsim-0.3/fwsim/man/fwsim-package.Rd |only fwsim-0.3/fwsim/man/fwsim.Rd | 99 +++++++++----- fwsim-0.3/fwsim/man/init_mutmodel.Rd |only fwsim-0.3/fwsim/man/mutmodel.Rd |only fwsim-0.3/fwsim/src/RcppExports.cpp |only fwsim-0.3/fwsim/src/common.h | 105 ++++++++++----- fwsim-0.3/fwsim/src/fwpopsim.cpp |only fwsim-0.3/fwsim/src/fwpopsim.h |only fwsim-0.3/fwsim/src/mutationmodels.cpp |only fwsim-0.3/fwsim/src/mutationmodels.h |only fwsim-0.3/fwsim/src/print.cpp |only fwsim-0.3/fwsim/src/print.h | 20 +- 40 files changed, 351 insertions(+), 181 deletions(-)
Title: R tools for making it easier to combine and clean data sets.
Description: R tools for combining and cleaning data sets, including filling in
missing observations with data from another data frame and creating
lag/lead variables.
Author: Christopher Gandrud
Maintainer: Christopher Gandrud
Diff between DataCombine versions 0.1.23 dated 2014-03-31 and 0.1.24 dated 2014-04-07
DESCRIPTION | 10 ++--- MD5 | 17 ++++----- NAMESPACE | 7 ++- NEWS | 4 ++ R/slide.R | 102 +++++++++++++++++++++++++++++++------------------------- README.md | 2 - man/StartEnd.Rd | 2 - man/shiftMA.Rd |only man/slide.Rd | 4 +- man/slideMA.Rd | 4 +- 10 files changed, 86 insertions(+), 66 deletions(-)
Title: Rasch Model Parameters by Pairwise Algorithm
Description: The package pairwise offers functions for the explicit calculation
-- not estimation! -- of the rasch item parameters for dichotomous and
polytomous item responses, using a pairwise comparison approach.
Author: Joerg-Henrik Heine
Maintainer: Joerg-Henrik Heine
Diff between pairwise versions 0.1.5 dated 2013-11-18 and 0.2.2 dated 2014-04-07
pairwise-0.1.5/pairwise/R/grmSE.dicho.R |only pairwise-0.1.5/pairwise/R/grmSE.poly.R |only pairwise-0.1.5/pairwise/R/ipSE.dicho.R |only pairwise-0.1.5/pairwise/R/ipSE.poly.R |only pairwise-0.1.5/pairwise/R/itempar.dicho.R |only pairwise-0.1.5/pairwise/R/itempar.poly.R |only pairwise-0.1.5/pairwise/R/plot.grmSE.R |only pairwise-0.1.5/pairwise/R/plot.grmSEpo.R |only pairwise-0.1.5/pairwise/R/plot.ipSE.R |only pairwise-0.1.5/pairwise/R/plot.ippw.R |only pairwise-0.1.5/pairwise/R/plot.ippwpo.R |only pairwise-0.1.5/pairwise/R/plot.ippwpoSE.R |only pairwise-0.1.5/pairwise/R/ppML.dicho.R |only pairwise-0.1.5/pairwise/R/ppWL.dicho.R |only pairwise-0.1.5/pairwise/R/ptbis.dicho.R |only pairwise-0.1.5/pairwise/R/summary.grmSE.R |only pairwise-0.1.5/pairwise/R/summary.grmSEpo.R |only pairwise-0.1.5/pairwise/R/summary.ipSE.R |only pairwise-0.1.5/pairwise/R/summary.ippw.R |only pairwise-0.1.5/pairwise/R/summary.ippwpo.R |only pairwise-0.1.5/pairwise/R/summary.ippwpoSE.R |only pairwise-0.1.5/pairwise/R/summary.ppMLdicho.R |only pairwise-0.1.5/pairwise/R/summary.ppWLdicho.R |only pairwise-0.1.5/pairwise/R/thetaML.dicho.R |only pairwise-0.1.5/pairwise/R/thetaWL.dicho.R |only pairwise-0.1.5/pairwise/man/grmSE.dicho.Rd |only pairwise-0.1.5/pairwise/man/grmSE.poly.Rd |only pairwise-0.1.5/pairwise/man/ipSE.dicho.Rd |only pairwise-0.1.5/pairwise/man/ipSE.poly.Rd |only pairwise-0.1.5/pairwise/man/itempar.dicho.Rd |only pairwise-0.1.5/pairwise/man/itempar.poly.Rd |only pairwise-0.1.5/pairwise/man/ppML.dicho.Rd |only pairwise-0.1.5/pairwise/man/ppWL.dicho.Rd |only pairwise-0.1.5/pairwise/man/ptbis.dicho.Rd |only pairwise-0.1.5/pairwise/man/thetaML.dicho.Rd |only pairwise-0.1.5/pairwise/man/thetaWL.dicho.Rd |only pairwise-0.2.2/pairwise/DESCRIPTION | 32 +++--- pairwise-0.2.2/pairwise/MD5 | 112 ++++++++++++--------- pairwise-0.2.2/pairwise/NAMESPACE | 62 ++++------- pairwise-0.2.2/pairwise/NEWS | 30 +++++ pairwise-0.2.2/pairwise/R/catprob.R |only pairwise-0.2.2/pairwise/R/esc.R |only pairwise-0.2.2/pairwise/R/ftab.R |only pairwise-0.2.2/pairwise/R/gif.R |only pairwise-0.2.2/pairwise/R/grm.R |only pairwise-0.2.2/pairwise/R/i.GewLL.R |only pairwise-0.2.2/pairwise/R/i.PersPar.R |only pairwise-0.2.2/pairwise/R/i.dataprep1.R |only pairwise-0.2.2/pairwise/R/i.dummy.R |only pairwise-0.2.2/pairwise/R/i.expscore.R |only pairwise-0.2.2/pairwise/R/i.missing_group.R |only pairwise-0.2.2/pairwise/R/i.polyptb.R |only pairwise-0.2.2/pairwise/R/i.ptb.R |only pairwise-0.2.2/pairwise/R/i.pvx.R |only pairwise-0.2.2/pairwise/R/i.pvx.matrix.R |only pairwise-0.2.2/pairwise/R/i.str.pattern.R |only pairwise-0.2.2/pairwise/R/make.incidenz.R | 2 pairwise-0.2.2/pairwise/R/pair.R |only pairwise-0.2.2/pairwise/R/pairSE.R |only pairwise-0.2.2/pairwise/R/pairwise-package.r | 41 ++----- pairwise-0.2.2/pairwise/R/pairwise.item.fit.R |only pairwise-0.2.2/pairwise/R/pairwise.person.fit.R |only pairwise-0.2.2/pairwise/R/pers.R |only pairwise-0.2.2/pairwise/R/plot.grm.R |only pairwise-0.2.2/pairwise/R/plot.pair.R |only pairwise-0.2.2/pairwise/R/plot.pairSE.R |only pairwise-0.2.2/pairwise/R/ptbis.R |only pairwise-0.2.2/pairwise/R/summary.grm.R |only pairwise-0.2.2/pairwise/R/summary.pair.R |only pairwise-0.2.2/pairwise/R/summary.pairSE.R |only pairwise-0.2.2/pairwise/R/summary.pers.R |only pairwise-0.2.2/pairwise/build |only pairwise-0.2.2/pairwise/data/DEU_PISA2012.RData |only pairwise-0.2.2/pairwise/data/bfiN.RData |binary pairwise-0.2.2/pairwise/data/bfiN_miss.RData |binary pairwise-0.2.2/pairwise/data/cog.RData |binary pairwise-0.2.2/pairwise/data/cogBOOKLET.RData |binary pairwise-0.2.2/pairwise/data/datalist |only pairwise-0.2.2/pairwise/data/sim200x3.RData |only pairwise-0.2.2/pairwise/inst |only pairwise-0.2.2/pairwise/man/DEU_PISA2012.Rd |only pairwise-0.2.2/pairwise/man/catprob.Rd |only pairwise-0.2.2/pairwise/man/esc.Rd |only pairwise-0.2.2/pairwise/man/ftab.Rd |only pairwise-0.2.2/pairwise/man/gif.Rd |only pairwise-0.2.2/pairwise/man/grm.Rd |only pairwise-0.2.2/pairwise/man/make.incidenz.Rd | 2 pairwise-0.2.2/pairwise/man/pair.Rd |only pairwise-0.2.2/pairwise/man/pairSE.Rd |only pairwise-0.2.2/pairwise/man/pairwise.Rd | 47 +++----- pairwise-0.2.2/pairwise/man/pairwise.item.fit.Rd |only pairwise-0.2.2/pairwise/man/pairwise.person.fit.Rd |only pairwise-0.2.2/pairwise/man/pers.Rd |only pairwise-0.2.2/pairwise/man/plot.grm.Rd |only pairwise-0.2.2/pairwise/man/plot.pair.Rd |only pairwise-0.2.2/pairwise/man/plot.pairSE.Rd |only pairwise-0.2.2/pairwise/man/ptbis.Rd |only pairwise-0.2.2/pairwise/man/sim200x3.Rd |only pairwise-0.2.2/pairwise/man/summary.pers.Rd |only pairwise-0.2.2/pairwise/vignettes |only 100 files changed, 171 insertions(+), 157 deletions(-)
Title: Configural Frequencies Analysis Using Loglinear Modeling
Description: Several functions for Configural Frequencies Analysis - introduced
by G. A. Lienert as 'Konfigurations Frequenz Analyse' (KFA)
Author: joerg-henrik heine, R.W. Alexandrowicz and some package testing by Mark
Stemmler
Maintainer: joerg-henrik heine
Diff between confreq versions 1.0 dated 2013-12-24 and 1.1 dated 2014-04-07
DESCRIPTION | 12 ++++++------ MD5 | 9 +++++---- NAMESPACE | 2 +- NEWS |only R/dat2fre.R | 7 ++++--- man/dat2fre.Rd | 24 +++++++++++++----------- 6 files changed, 29 insertions(+), 25 deletions(-)
Title: Analysis of music and speech
Description: Collection of tools to analyze music, extract features
like MFCCs, handling wave files, read mp3, transcription, ...
Also contains functions ported from the rastamat Matlab
package.
Author: Uwe Ligges
Maintainer: Uwe Ligges
Diff between tuneR versions 1.2 dated 2014-04-04 and 1.2.1 dated 2014-04-07
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/readWave.R | 4 ++-- inst/CITATION | 2 +- man/readWave.Rd | 2 ++ 5 files changed, 13 insertions(+), 11 deletions(-)
Title: Dirichlet Process Bayesian Clustering, Profile Regression
Description: Dirichlet process Bayesian clustering, also known as profile regression.
Author: David I. Hastie
Maintainer: Silvia Liverani
Diff between PReMiuM versions 3.0.23 dated 2014-04-03 and 3.0.24 dated 2014-04-07
PReMiuM-3.0.23/PReMiuM/inst/citation |only PReMiuM-3.0.24/PReMiuM/ChangeLog | 8 +++ PReMiuM-3.0.24/PReMiuM/DESCRIPTION | 8 +-- PReMiuM-3.0.24/PReMiuM/MD5 | 20 ++++---- PReMiuM-3.0.24/PReMiuM/R/postProcess.R | 23 +++------- PReMiuM-3.0.24/PReMiuM/inst/CITATION |only PReMiuM-3.0.24/PReMiuM/man/PReMiuM-package.Rd | 4 - PReMiuM-3.0.24/PReMiuM/man/profRegr.Rd | 2 PReMiuM-3.0.24/PReMiuM/man/setHyperparams.Rd | 5 -- PReMiuM-3.0.24/PReMiuM/src/include/Math/distribution.h | 10 +++- PReMiuM-3.0.24/PReMiuM/src/include/PReMiuMIO.h | 39 +++++++---------- PReMiuM-3.0.24/PReMiuM/src/include/PReMiuMModel.h | 17 +------ 12 files changed, 62 insertions(+), 74 deletions(-)
Title: Discrete Laplace mixture inference using the EM algorithm
Description: disclapmix makes inference in a mixture of Discrete Laplace distributions using the EM algorithm. This can e.g. be used for modelling the distribution of Y chromosomal haplotypes as described in [1, 2] (refer to the URL section).
Author: Mikkel Meyer Andersen and Poul Svante Eriksen
Maintainer: Mikkel Meyer Andersen
Diff between disclapmix versions 1.2 dated 2013-10-16 and 1.3 dated 2014-04-07
DESCRIPTION | 11 +++---- MD5 | 34 +++++++++++---------- NAMESPACE | 6 +++ NEWS | 12 +++++++ R/RcppExports.R | 4 ++ R/disclapmix.R | 53 +++++++++++++++++++++++++++++---- R/helper.R | 55 +++++++++++++++++++++++++++++++---- man/clusterdist.Rd | 4 +- man/clusterprob.Rd | 2 + man/disclapmix-package.Rd | 3 + man/disclapmix.Rd | 10 +++++- man/disclapmixfit.Rd | 2 + man/haplotype_diversity.Rd |only man/predict.disclapmixfit.Rd | 2 + man/print.disclapmixfit.Rd | 2 + man/simulate.disclapmixfit.Rd |only man/summary.disclapmixfit.Rd | 2 + src/RcppExports.cpp | 66 ++++++++++++++++++++++++++---------------- src/helper.cpp | 39 ++++++++++++++++++++++++ 19 files changed, 244 insertions(+), 63 deletions(-)
Title: Discrete Laplace Exponential Family
Description: Discrete Laplace exponential family for models such as a generalized linear model
Author: Mikkel Meyer Andersen and Poul Svante Eriksen
Maintainer: Mikkel Meyer Andersen
Diff between disclap versions 1.4 dated 2013-05-29 and 1.5 dated 2014-04-07
DESCRIPTION | 11 +++++------ MD5 | 6 +++--- NEWS | 3 +++ R/rdisclap.R | 4 +++- 4 files changed, 14 insertions(+), 10 deletions(-)
More information about spectral.methods at CRAN
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Title: Easier ncdf file handling
Description: Set of tools to simplify the handling of ncdf files with the RNetCDF package.
Most functions are wrappers for basic functions from RNetCDF to easily run combinations of these
functions for frequently encountered tasks.
Author: Jannis v. Buttlar
Maintainer: Jannis v. Buttlar
Diff between ncdf.tools versions 0.7.1.290 dated 2014-04-04 and 0.7.1.291 dated 2014-04-07
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 5 +---- R/plotDatacube.R | 4 +--- man/ncdf.tools-package.Rd | 4 ++-- 5 files changed, 12 insertions(+), 17 deletions(-)
Title: Fixed effects Selection in Linear Mixed Models
Description: Fixed effects Selection in Linear Mixed Models
Author: F.Rohart
Maintainer: Florian Rohart
Diff between MMS versions 2.0 dated 2013-08-09 and 3.00 dated 2014-04-07
MMS-2.0/MMS/R/lassoMM.R |only MMS-2.0/MMS/R/lassoMM_diag.R |only MMS-2.0/MMS/R/lassoMM_nodiag.R |only MMS-2.0/MMS/R/print.lassoMM.R |only MMS-2.0/MMS/R/print.proctestMM.R |only MMS-2.0/MMS/R/proctestMM.R |only MMS-2.0/MMS/R/proctestMM_diag.R |only MMS-2.0/MMS/R/proctestMM_nodiag.R |only MMS-2.0/MMS/R/refit.proctestMM.R |only MMS-2.0/MMS/R/refit.proctestMM_diag.R |only MMS-2.0/MMS/R/refit.proctestMM_nodiag.R |only MMS-2.0/MMS/man/lassoMM.Rd |only MMS-2.0/MMS/man/proctestMM.Rd |only MMS-2.0/MMS/man/refit.proctestMM.Rd |only MMS-3.00/MMS/DESCRIPTION | 12 +++++----- MMS-3.00/MMS/MD5 | 36 ++++++++++++++++---------------- MMS-3.00/MMS/NAMESPACE | 8 +++---- MMS-3.00/MMS/R/MM2function.R | 28 ++++++++++++++++++++++++ MMS-3.00/MMS/R/lassop.R |only MMS-3.00/MMS/R/lassop_diag.R |only MMS-3.00/MMS/R/lassop_nodiag.R |only MMS-3.00/MMS/R/mhtp.R |only MMS-3.00/MMS/R/mhtp_diag.R |only MMS-3.00/MMS/R/mhtp_nodiag.R |only MMS-3.00/MMS/R/print.lassop.R |only MMS-3.00/MMS/R/print.mhtp.R |only MMS-3.00/MMS/R/refit.mhtp.R |only MMS-3.00/MMS/R/refit.mhtp_diag.R |only MMS-3.00/MMS/R/refit.mhtp_nodiag.R |only MMS-3.00/MMS/man/MMS-package.Rd | 14 ++++++------ MMS-3.00/MMS/man/lassop.Rd |only MMS-3.00/MMS/man/mhtp.Rd |only MMS-3.00/MMS/man/refit.mhtp.Rd |only 33 files changed, 62 insertions(+), 36 deletions(-)
Title: Multiple Hypotheses Testing For Variable Selection
Description: Multiple Hypotheses Testing For Variable Selection
Author: F.Rohart
Maintainer: F.Rohart
Diff between mht versions 2.122 dated 2013-05-30 and 3.00 dated 2014-04-07
mht-2.122/mht/R/predict.test.R |only mht-2.122/mht/R/predict.test_ord.R |only mht-2.122/mht/R/print.proctest.R |only mht-2.122/mht/R/print.proctest_ord.R |only mht-2.122/mht/R/proc_ordfunction.R |only mht-2.122/mht/R/procbolfunction.R |only mht-2.122/mht/R/quantil_ordfunction.R |only mht-2.122/mht/R/quantileprocfinalfunction.R |only mht-2.122/mht/R/refit.proctest.R |only mht-2.122/mht/R/refit.proctest_ord.R |only mht-2.122/mht/man/predict.test.Rd |only mht-2.122/mht/man/predict.test_ord.Rd |only mht-2.122/mht/man/proc_ord.Rd |only mht-2.122/mht/man/procbol.Rd |only mht-2.122/mht/man/quantileprocbol.Rd |only mht-2.122/mht/man/refit.proctest.Rd |only mht-2.122/mht/man/refit.proctest_ord.Rd |only mht-2.122/mht/src/mht.cpp |only mht-2.122/mht/src/mht.h |only mht-3.00/mht/DESCRIPTION | 8 +-- mht-3.00/mht/MD5 | 58 ++++++++++++++-------------- mht-3.00/mht/NAMESPACE | 15 +++---- mht-3.00/mht/R/bolassofunction.R | 8 ++- mht-3.00/mht/R/decoupdyadfunction.R | 10 ---- mht-3.00/mht/R/mht.R |only mht-3.00/mht/R/mht.order.R |only mht-3.00/mht/R/predict.mht.R |only mht-3.00/mht/R/predict.mht.order.R |only mht-3.00/mht/R/print.mht.R |only mht-3.00/mht/R/print.mht.order.R |only mht-3.00/mht/R/quantil_ord.R |only mht-3.00/mht/R/quantilemht.R |only mht-3.00/mht/R/quantiletest.R | 2 mht-3.00/mht/R/refit.mht.R |only mht-3.00/mht/R/refit.mht.order.R |only mht-3.00/mht/R/zzz.R | 6 -- mht-3.00/mht/man/bolasso.Rd | 2 mht-3.00/mht/man/decompbaseortho.Rd | 4 - mht-3.00/mht/man/decoupdyad.Rd | 2 mht-3.00/mht/man/mht-package.Rd | 6 +- mht-3.00/mht/man/mht.Rd |only mht-3.00/mht/man/mht.order.Rd |only mht-3.00/mht/man/predict.mht.Rd |only mht-3.00/mht/man/predict.mht.order.Rd |only mht-3.00/mht/man/quantilemht.Rd |only mht-3.00/mht/man/refit.mht.Rd |only mht-3.00/mht/man/refit.mht.order.Rd |only mht-3.00/mht/src/mhtquant.cpp |only mht-3.00/mht/src/mhtquant.h |only 49 files changed, 57 insertions(+), 64 deletions(-)
More information about TreatmentSelection at CRAN
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Title: Tools for Working with Rotation Data
Description: This package implements tools for working with rotational data: it
allows simulation from the most commonly used distributions on SO(3), it
includes methods for different Bayes, mean and median type estimators for the
central orientation of a sample, it provides confidence and credible regions
for the central orientation based on those estimators and it includes a novel
visualization technique for rotation data.
Author: Bryan Stanfill
Maintainer: Bryan Stanfill
Diff between rotations versions 1.1 dated 2014-02-23 and 1.2 dated 2014-04-07
DESCRIPTION | 10 - MD5 | 52 ++--- NEWS | 21 ++ R/RcppExports.R | 20 +- R/bayes.R | 30 +-- R/distributions.R | 47 +--- R/primatives.R | 2 R/regions.R | 76 +++++--- build/vignette.rds |binary inst/REFERENCES.bib | 18 + inst/doc/rotations-intro.R | 8 inst/doc/rotations-intro.Rnw | 87 ++++----- inst/doc/rotations-intro.pdf |binary inst/include/rotations_RcppExports.h | 130 ++++++++++++- man/Cayley.Rd | 2 man/Fisher.Rd | 6 man/bayesCR.Rd | 2 man/chang.Rd | 8 man/fisheretal.Rd | 5 man/mean.SO3.Rd | 2 man/prentice.Rd | 10 - man/region.Rd | 15 - src/CppBayesFunctions.cpp | 276 ++++++++++++++++++++++++++--- src/RcppExports.cpp | 303 +++++++++++++++++++++++++++++--- src/basics.cpp | 1 vignettes/rotations-intro.Rnw | 87 ++++----- vignettes/stanfill-hofmann-genschel.bib | 126 ++++++++----- 27 files changed, 1014 insertions(+), 330 deletions(-)
Title: Multivariate Normality Tests
Description: Assessing the assumption of multivariate normality is required by many parametric multivariate statistical methods, such as discriminant analysis, principal component analysis, MANOVA, etc. Here, we present an R package to asses multivariate normality. The MVN package contains three most widely used multivariate normality tests, including Mardia's, Henze-Zirkler's and Royston's multivariate normality tests.
Author: Selcuk Korkmaz and Dincer Goksuluk
Maintainer: Selcuk Korkmaz
Diff between MVN versions 3.1 dated 2014-03-15 and 3.2 dated 2014-04-07
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- R/roystonTest.R | 6 +++--- build/vignette.rds |binary inst/doc/MVN.R | 33 ++++++++++++++++++++++++++++++--- inst/doc/MVN.Rnw | 50 ++++++++++++++++++++++++++++++++++++++++++++++---- inst/doc/MVN.pdf |binary vignettes/MVN.Rnw | 50 ++++++++++++++++++++++++++++++++++++++++++++++---- 8 files changed, 137 insertions(+), 26 deletions(-)
Title: Efficient iterator for permutations and combinations
Description: This package helps in 1) generating permutations and combinations with or without replacement; 2) with distinct items or non-distinct items (multiset); 3) calculating number of combinations or permutations in various situations. All generated sequences are in lexicographical order (AKA, dictionary order). The algorithms to generate permutations and combinations are memory efficient, only previous sequence is required to generate next sequence. These iteratively algorithms enable users to process all sequences without putting all results in the memory at the same time. The algorithms are written in C/C++ and hence very computational efficient.
Author: Randy Lai [aut, cre], Martin Broadhurst [aut]
Maintainer: Randy Lai
Diff between iterpc versions 0.2.2 dated 2014-03-29 and 0.2.3 dated 2014-04-07
DESCRIPTION | 10 ++--- MD5 | 19 +++++---- R/combination.R | 2 - R/iterator.R | 2 - R/permutation.R | 2 - R/utilities.R | 9 +++- README.md | 104 ++++++----------------------------------------------- demo |only man/iterpc.Rd | 3 + man/multichoose.Rd | 9 ++-- 10 files changed, 43 insertions(+), 117 deletions(-)
Title: Gamma Lasso Regression
Description: This package implements the gamma lasso algorithm for regularization paths corresponding to a range of non-convex cost functions between L0 and L1 norms. As much as possible, usage is analogous to that for the glmnet package (which does the same thing for penalization between L1 and L2 norms).
Author: Matt Taddy
Maintainer: Matt Taddy
Diff between gamlr versions 1.11-2 dated 2014-01-30 and 1.11-3 dated 2014-04-07
DESCRIPTION | 7 ++--- MD5 | 14 +++++------ R/cv.gamlr.R | 10 ++++---- R/gamlr.R | 27 +++++++++++++++++------ README.md | 21 +++++++---------- man/AICc.Rd | 6 ++--- man/gamlr.Rd | 16 ++++++++----- src/gamlr.c | 69 ++++++++++++++++++++++++++++------------------------------- 8 files changed, 90 insertions(+), 80 deletions(-)
Title: Statistical functions for the Delaporte distribution
Description: Provides probability mass, distribution, quantile, random variate generation, and method of moments parameter estimation functions for the Delaporte distribution.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler
Diff between Delaporte versions 2.0-1 dated 2014-02-05 and 2.1-0 dated 2014-04-07
DESCRIPTION | 11 ++++++----- MD5 | 23 +++++++++++++---------- R/Delaporte.R | 7 +++++++ R/RcppExports.R | 4 ++++ README.md | 2 +- inst/NEWS.Rd | 13 ++++++++++--- man/Delaporte-internal.Rd | 1 + man/Delaporte-package.Rd | 10 +++++----- man/Delaporte.Rd | 35 +++++++++++++++++++---------------- src/Delaporte.cpp | 27 +++++++++++++++++++++++++++ src/RcppExports.cpp | 15 +++++++++++++++ tests |only 12 files changed, 108 insertions(+), 40 deletions(-)