Title: Generic SQL helper functions for TSdbi SQL plugins
Diff between TSsql versions 2013.9-1 dated 2013-09-29 and 2014.4-1 dated 2014-04-08
Description: This package provides standard SQL query functions used by
SQL plugins packages for the TSdbi interface to time series databases.
It will mainly be used by other packages rather than directly by end
users. The one exception is the function TSquery which can be used to
construct a time series from a database containing observations over
time (e.g. balance statements for muliple years), but where the database
is not specifically designed to store time series (as with other
TSdbi SQL plugin packages).
Comprehensive examples of all the TS* packages is provided in the
vignette Guide.pdf with the TSdata package.
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 11 +++++++----
MD5 | 6 +++---
NEWS | 5 +++++
inst/TSsql/TSdbi.TSsql | 2 +-
4 files changed, 16 insertions(+), 8 deletions(-)
Title: Quandl Data Connection
Diff between Quandl versions 2.1.2 dated 2013-09-12 and 2.3.1 dated 2014-04-08
Description: This package interacts directly with the Quandl API to offer data
in a number of formats usable in R, as well as the ability to upload and
search.
Author: Raymond McTaggart, Gergely Daroczi
Maintainer: Raymond McTaggart
ChangeLog | 43 +++++++++-
DESCRIPTION | 13 +--
LICENSE |only
MD5 | 24 +++--
NAMESPACE | 9 ++
R/Quandl.R | 225 +++++++++++++++++++++++++++++++----------------------
R/Quandlapi.R |only
R/Quandlpush.R | 138 +++++++++++++++++++++-----------
R/Quandlsearch.R | 20 +++-
README.md | 45 +++-------
inst |only
man/Quandl.Rd | 9 +-
man/Quandl.push.Rd | 26 ++----
man/metaData.Rd |only
man/quandl.api.Rd |only
tests |only
16 files changed, 338 insertions(+), 214 deletions(-)
Title: Discrete Beta Kernel Graduation of Mortality Data
Diff between DBKGrad versions 1.4 dated 2013-08-23 and 1.5 dated 2014-04-08
Description: This package allows for nonparametric graduation of mortality rates using fixed or adaptive discrete beta kernel estimator.
Author: Angelo Mazza [aut, cre],
Antonio Punzo [aut]
Maintainer: Angelo Mazza
DESCRIPTION | 18 ++++++++++--------
MD5 | 13 +++++++------
R/dbkGrad.R | 20 ++++++++++----------
data/ItalyM.RData |binary
inst |only
man/DBKGrad-package.Rd | 8 +++++---
man/dbkGrad.Rd | 2 ++
man/plot.dbkGrad.Rd | 1 +
8 files changed, 35 insertions(+), 27 deletions(-)
Title: Block, assign, and diagnose potential interference in randomized
experiments
Diff between blockTools versions 0.5-7 dated 2013-07-31 and 0.5-8 dated 2014-04-08
Description: Blocks units into experimental blocks, with one unit per treatment condition, by creating a measure of multivariate distance between all possible pairs of units. Maximum, minimum, or an allowable range of differences between units on one variable can be set. Randomly assign units to treatment conditions. Diagnose potential interference between units assigned to different treatment conditions. Write outputs to .tex and .csv files.
Author: Ryan T. Moore and Keith Schnakenberg
Maintainer: Ryan T. Moore
blockTools-0.5-7/blockTools/data/x100.tab |only
blockTools-0.5-8/blockTools/CHANGELOG | 9 +++++-
blockTools-0.5-8/blockTools/DESCRIPTION | 10 +++---
blockTools-0.5-8/blockTools/LICENSE | 2 -
blockTools-0.5-8/blockTools/MD5 | 27 +++++++++---------
blockTools-0.5-8/blockTools/NAMESPACE | 1
blockTools-0.5-8/blockTools/R/assignment.R | 10 ++++++
blockTools-0.5-8/blockTools/R/block.R | 26 ++++++++---------
blockTools-0.5-8/blockTools/R/naive.R | 2 -
blockTools-0.5-8/blockTools/R/optgreed.R | 2 -
blockTools-0.5-8/blockTools/data/x100.tab.gz |only
blockTools-0.5-8/blockTools/demo/block.R | 2 -
blockTools-0.5-8/blockTools/inst/tests |only
blockTools-0.5-8/blockTools/man/assignment.Rd | 8 ++++-
blockTools-0.5-8/blockTools/man/block.Rd | 2 -
blockTools-0.5-8/blockTools/man/blockTools-package.Rd | 4 +-
16 files changed, 63 insertions(+), 42 deletions(-)
Title: Data sets for econometrics
Diff between Ecdat versions 0.2-4 dated 2014-01-11 and 0.2-5 dated 2014-04-08
Description: Data sets for econometrics
Author: Yves Croissant
Maintainer: Spencer Graves
Ecdat-0.2-4/Ecdat/R |only
Ecdat-0.2-4/Ecdat/man/UShouse.senate.Rd |only
Ecdat-0.2-4/Ecdat/man/USsenateClass.Rd |only
Ecdat-0.2-4/Ecdat/man/as.Date1970.Rd |only
Ecdat-0.2-4/Ecdat/man/asNumericDF.Rd |only
Ecdat-0.2-4/Ecdat/man/camelParse.Rd |only
Ecdat-0.2-4/Ecdat/man/financialCrisisFiles.Rd |only
Ecdat-0.2-4/Ecdat/man/grepNonStandardCharacters.Rd |only
Ecdat-0.2-4/Ecdat/man/match.data.frame.Rd |only
Ecdat-0.2-4/Ecdat/man/mergeUShouse.senate.Rd |only
Ecdat-0.2-4/Ecdat/man/mergeVote.Rd |only
Ecdat-0.2-4/Ecdat/man/parseCommas.Rd |only
Ecdat-0.2-4/Ecdat/man/parseDollars.Rd |only
Ecdat-0.2-4/Ecdat/man/parseName.Rd |only
Ecdat-0.2-4/Ecdat/man/read.transpose.Rd |only
Ecdat-0.2-4/Ecdat/man/readCookPVI.Rd |only
Ecdat-0.2-4/Ecdat/man/readFinancialCrisisFiles.Rd |only
Ecdat-0.2-4/Ecdat/man/readNIPA.Rd |only
Ecdat-0.2-4/Ecdat/man/readUShouse.Rd |only
Ecdat-0.2-4/Ecdat/man/readUSsenate.Rd |only
Ecdat-0.2-4/Ecdat/man/readUSstateAbbreviations.Rd |only
Ecdat-0.2-4/Ecdat/man/recode2.Rd |only
Ecdat-0.2-4/Ecdat/man/subNonStandardCharacters.Rd |only
Ecdat-0.2-4/Ecdat/man/subNonStandardNames.Rd |only
Ecdat-0.2-5/Ecdat/DESCRIPTION | 12
Ecdat-0.2-5/Ecdat/MD5 | 295 ++++++++-------------
Ecdat-0.2-5/Ecdat/NAMESPACE | 5
Ecdat-0.2-5/Ecdat/data/Accident.rda |binary
Ecdat-0.2-5/Ecdat/data/Airline.rda |binary
Ecdat-0.2-5/Ecdat/data/Airq.rda |binary
Ecdat-0.2-5/Ecdat/data/Benefits.rda |binary
Ecdat-0.2-5/Ecdat/data/Bids.rda |binary
Ecdat-0.2-5/Ecdat/data/BudgetFood.rda |binary
Ecdat-0.2-5/Ecdat/data/BudgetItaly.rda |binary
Ecdat-0.2-5/Ecdat/data/BudgetUK.rda |binary
Ecdat-0.2-5/Ecdat/data/Bwages.rda |binary
Ecdat-0.2-5/Ecdat/data/CPSch3.rda |binary
Ecdat-0.2-5/Ecdat/data/CRSPday.rda |binary
Ecdat-0.2-5/Ecdat/data/CRSPmon.rda |binary
Ecdat-0.2-5/Ecdat/data/Capm.rda |binary
Ecdat-0.2-5/Ecdat/data/Car.rda |binary
Ecdat-0.2-5/Ecdat/data/Caschool.rda |binary
Ecdat-0.2-5/Ecdat/data/Catsup.rda |binary
Ecdat-0.2-5/Ecdat/data/Cigar.rda |binary
Ecdat-0.2-5/Ecdat/data/Cigarette.rda |binary
Ecdat-0.2-5/Ecdat/data/Clothing.rda |binary
Ecdat-0.2-5/Ecdat/data/Computers.rda |binary
Ecdat-0.2-5/Ecdat/data/Consumption.rda |binary
Ecdat-0.2-5/Ecdat/data/Cracker.rda |binary
Ecdat-0.2-5/Ecdat/data/Crime.rda |binary
Ecdat-0.2-5/Ecdat/data/DM.rda |binary
Ecdat-0.2-5/Ecdat/data/Diamond.rda |binary
Ecdat-0.2-5/Ecdat/data/Doctor.rda |binary
Ecdat-0.2-5/Ecdat/data/DoctorAUS.rda |binary
Ecdat-0.2-5/Ecdat/data/DoctorContacts.rda |binary
Ecdat-0.2-5/Ecdat/data/Earnings.rda |binary
Ecdat-0.2-5/Ecdat/data/Electricity.rda |binary
Ecdat-0.2-5/Ecdat/data/Fair.rda |binary
Ecdat-0.2-5/Ecdat/data/Fatality.rda |binary
Ecdat-0.2-5/Ecdat/data/FinancialCrisisFiles.rda |binary
Ecdat-0.2-5/Ecdat/data/Fishing.rda |binary
Ecdat-0.2-5/Ecdat/data/Forward.rda |binary
Ecdat-0.2-5/Ecdat/data/FriendFoe.rda |binary
Ecdat-0.2-5/Ecdat/data/Garch.rda |binary
Ecdat-0.2-5/Ecdat/data/Gasoline.rda |binary
Ecdat-0.2-5/Ecdat/data/Griliches.rda |binary
Ecdat-0.2-5/Ecdat/data/Grunfeld.rda |binary
Ecdat-0.2-5/Ecdat/data/HC.rda |binary
Ecdat-0.2-5/Ecdat/data/HI.rda |binary
Ecdat-0.2-5/Ecdat/data/Hdma.rda |binary
Ecdat-0.2-5/Ecdat/data/Heating.rda |binary
Ecdat-0.2-5/Ecdat/data/Hedonic.rda |binary
Ecdat-0.2-5/Ecdat/data/Housing.rda |binary
Ecdat-0.2-5/Ecdat/data/Hstarts.rda |binary
Ecdat-0.2-5/Ecdat/data/Icecream.rda |binary
Ecdat-0.2-5/Ecdat/data/IncomeUK.rda |binary
Ecdat-0.2-5/Ecdat/data/Irates.rda |binary
Ecdat-0.2-5/Ecdat/data/Journals.rda |binary
Ecdat-0.2-5/Ecdat/data/Kakadu.rda |binary
Ecdat-0.2-5/Ecdat/data/Ketchup.rda |binary
Ecdat-0.2-5/Ecdat/data/Klein.rda |binary
Ecdat-0.2-5/Ecdat/data/LT.rda |binary
Ecdat-0.2-5/Ecdat/data/LaborSupply.rda |binary
Ecdat-0.2-5/Ecdat/data/Labour.rda |binary
Ecdat-0.2-5/Ecdat/data/Longley.rda |binary
Ecdat-0.2-5/Ecdat/data/MCAS.rda |binary
Ecdat-0.2-5/Ecdat/data/MW.rda |binary
Ecdat-0.2-5/Ecdat/data/Macrodat.rda |binary
Ecdat-0.2-5/Ecdat/data/Males.rda |binary
Ecdat-0.2-5/Ecdat/data/ManufCost.rda |binary
Ecdat-0.2-5/Ecdat/data/Mathlevel.rda |binary
Ecdat-0.2-5/Ecdat/data/MedExp.rda |binary
Ecdat-0.2-5/Ecdat/data/Metal.rda |binary
Ecdat-0.2-5/Ecdat/data/Mishkin.rda |binary
Ecdat-0.2-5/Ecdat/data/Mode.rda |binary
Ecdat-0.2-5/Ecdat/data/ModeChoice.rda |binary
Ecdat-0.2-5/Ecdat/data/Mofa.rda |binary
Ecdat-0.2-5/Ecdat/data/Money.rda |binary
Ecdat-0.2-5/Ecdat/data/MoneyUS.rda |binary
Ecdat-0.2-5/Ecdat/data/Mpyr.rda |binary
Ecdat-0.2-5/Ecdat/data/Mroz.rda |binary
Ecdat-0.2-5/Ecdat/data/MunExp.rda |binary
Ecdat-0.2-5/Ecdat/data/NaturalPark.rda |binary
Ecdat-0.2-5/Ecdat/data/Nerlove.rda |binary
Ecdat-0.2-5/Ecdat/data/OFP.rda |binary
Ecdat-0.2-5/Ecdat/data/Oil.rda |binary
Ecdat-0.2-5/Ecdat/data/Orange.rda |binary
Ecdat-0.2-5/Ecdat/data/PE.rda |binary
Ecdat-0.2-5/Ecdat/data/PPP.rda |binary
Ecdat-0.2-5/Ecdat/data/PSID.rda |binary
Ecdat-0.2-5/Ecdat/data/Participation.rda |binary
Ecdat-0.2-5/Ecdat/data/PatentsHGH.rda |binary
Ecdat-0.2-5/Ecdat/data/PatentsRD.rda |binary
Ecdat-0.2-5/Ecdat/data/Pound.rda |binary
Ecdat-0.2-5/Ecdat/data/Pricing.rda |binary
Ecdat-0.2-5/Ecdat/data/Produc.rda |binary
Ecdat-0.2-5/Ecdat/data/RetSchool.rda |binary
Ecdat-0.2-5/Ecdat/data/SP500.rda |binary
Ecdat-0.2-5/Ecdat/data/Schooling.rda |binary
Ecdat-0.2-5/Ecdat/data/Solow.rda |binary
Ecdat-0.2-5/Ecdat/data/Somerville.rda |binary
Ecdat-0.2-5/Ecdat/data/Star.rda |binary
Ecdat-0.2-5/Ecdat/data/Strike.rda |binary
Ecdat-0.2-5/Ecdat/data/StrikeDur.rda |binary
Ecdat-0.2-5/Ecdat/data/StrikeNb.rda |binary
Ecdat-0.2-5/Ecdat/data/SumHes.rda |binary
Ecdat-0.2-5/Ecdat/data/Tbrate.rda |binary
Ecdat-0.2-5/Ecdat/data/Tobacco.rda |binary
Ecdat-0.2-5/Ecdat/data/Train.rda |binary
Ecdat-0.2-5/Ecdat/data/TranspEq.rda |binary
Ecdat-0.2-5/Ecdat/data/Treatment.rda |binary
Ecdat-0.2-5/Ecdat/data/Tuna.rda |binary
Ecdat-0.2-5/Ecdat/data/USFinanceIndustry.rda |binary
Ecdat-0.2-5/Ecdat/data/USstateAbbreviations.rda |binary
Ecdat-0.2-5/Ecdat/data/UStaxWords.rda |binary
Ecdat-0.2-5/Ecdat/data/UnempDur.rda |binary
Ecdat-0.2-5/Ecdat/data/Unemployment.rda |binary
Ecdat-0.2-5/Ecdat/data/University.rda |binary
Ecdat-0.2-5/Ecdat/data/VietNamH.rda |binary
Ecdat-0.2-5/Ecdat/data/VietNamI.rda |binary
Ecdat-0.2-5/Ecdat/data/Wages.rda |binary
Ecdat-0.2-5/Ecdat/data/Wages1.rda |binary
Ecdat-0.2-5/Ecdat/data/Workinghours.rda |binary
Ecdat-0.2-5/Ecdat/data/Yen.rda |binary
Ecdat-0.2-5/Ecdat/data/Yogurt.rda |binary
Ecdat-0.2-5/Ecdat/data/bankingCrises.rda |binary
Ecdat-0.2-5/Ecdat/data/incomeInequality.rda |binary
Ecdat-0.2-5/Ecdat/data/nonEnglishNames.rda |binary
Ecdat-0.2-5/Ecdat/man/FinancialCrisisFiles.Rd |only
Ecdat-0.2-5/Ecdat/man/incomeInequality.Rd | 12
150 files changed, 143 insertions(+), 181 deletions(-)
Title: Multivariate and univariate meta-analysis and meta-regression
Diff between mvmeta versions 0.4.2 dated 2014-03-31 and 0.4.3 dated 2014-04-08
Description: The package mvmeta consists of a collection of functions to perform fixed and random-effects multivariate and univariate meta-analysis and meta-regression in R.
Author: Antonio Gasparrini
Maintainer: Antonio Gasparrini
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/inputcov.R | 6 +++++-
R/mvmeta.R | 5 +++--
inst/ChangeLog | 5 ++++-
5 files changed, 20 insertions(+), 12 deletions(-)
Title: Bayesian continual reassessment method (CRM) designs for Phase I
dose-finding trials.
Diff between bcrm versions 0.4.3 dated 2013-09-10 and 0.4.4 dated 2014-04-08
Description: This package implements a wide variety of one and two-parameter Bayesian CRM designs. The program can run interactively, allowing the user to enter outcomes after each cohort has been recruited, or via simulation to assess operating characteristics.
Author: Michael Sweeting
Maintainer: Michael Sweeting
bcrm-0.4.3/bcrm/R/bcrm_0.4.3.R |only
bcrm-0.4.4/bcrm/DESCRIPTION | 10 +++++-----
bcrm-0.4.4/bcrm/MD5 | 30 +++++++++++++++---------------
bcrm-0.4.4/bcrm/NAMESPACE | 5 +++++
bcrm-0.4.4/bcrm/NEWS | 5 +++++
bcrm-0.4.4/bcrm/R/bcrm_0.4.4.R |only
bcrm-0.4.4/bcrm/man/bcrm-package.Rd | 8 ++++----
bcrm-0.4.4/bcrm/man/bcrm.Rd | 2 +-
bcrm-0.4.4/bcrm/man/find.x.Rd | 2 +-
bcrm-0.4.4/bcrm/man/getprior.Rd | 2 +-
bcrm-0.4.4/bcrm/man/plot.bcrm.Rd | 4 ++--
bcrm-0.4.4/bcrm/man/plot.bcrm.sim.Rd | 2 +-
bcrm-0.4.4/bcrm/man/plot.threep3.Rd | 2 +-
bcrm-0.4.4/bcrm/man/posterior.Rd | 2 +-
bcrm-0.4.4/bcrm/man/print.bcrm.Rd | 2 +-
bcrm-0.4.4/bcrm/man/print.threep3.Rd | 2 +-
bcrm-0.4.4/bcrm/man/threep3.Rd | 4 ++--
17 files changed, 46 insertions(+), 36 deletions(-)
Title: Smooth Hazard Ratio Curves taking a Reference Value
Diff between smoothHR versions 1.0 dated 2013-04-02 and 1.0.1 dated 2014-04-08
Description: Provides flexible hazard ratio curves allowing non-linear
relationships between continuous predictors and survival. To
better understand the effects that each continuous covariate
has on the outcome, results are ex pressed in terms of hazard
ratio curves, taking a specific covariate value as reference.
Confidence bands for these curves are also derived.
Author: Artur Agostinho Araujo and Luis Meira-Machado
Maintainer: Artur Agostinho Araujo
DESCRIPTION | 8
MD5 | 24 +-
R/dfmacox.R | 388 +++++++++++++++++++++++-------------------------
R/smoothHR.R | 185 +++++++++++-----------
inst/CITATION | 54 ++++--
inst/NEWS.Rd | 28 ++-
man/dfmacox.Rd | 158 ++++++++++---------
man/plot.HR.Rd | 150 +++++++++---------
man/predict.HR.Rd | 127 ++++++++-------
man/print.HR.Rd | 102 ++++++------
man/smoothHR-package.Rd | 64 ++++---
man/smoothHR.Rd | 142 +++++++++--------
man/whas500.Rd | 62 +++----
13 files changed, 772 insertions(+), 720 deletions(-)
Title: Shape-Constrained Additive Regression: a Maximum Likelihood
Approach
Diff between scar versions 0.1-0 dated 2013-07-23 and 0.2-0 dated 2014-04-08
Description: This package computes the maximum likelihood estimator of the generalised additive and index regression with shape constraints. Each additive component function is assumed to obey one of the nine possible shape restrictions: linear, increasing, decreasing, convex, convex increasing, convex decreasing, concave, concave increasing, or concave decreasing.
Author: Yining Chen and Richard Samworth
Maintainer: Yining Chen
DESCRIPTION | 11 ++++---
MD5 | 31 +++++++++++++++-------
NAMESPACE | 4 ++
NEWS |only
R/plot.scair.R |only
R/plot.scar.R | 4 +-
R/predict.scair.R |only
R/scair.R |only
R/scar.R | 20 +++++++-------
data |only
man/PhDPublications.Rd |only
man/decathlon.Rd |only
man/decathlon_raw.Rd |only
man/plot.scair.Rd |only
man/plot.scar.Rd | 26 ++++++++++--------
man/predict.scair.Rd |only
man/predict.scar.Rd | 19 +++++++------
man/scair.Rd |only
man/scar-internal.Rd | 2 -
man/scar-package.Rd | 51 +++++++++++++++++++++++++++---------
man/scar.Rd | 68 +++++++++++++++++++++++++------------------------
21 files changed, 142 insertions(+), 94 deletions(-)
Title: Tools for tensor analysis and decomposition
Diff between rTensor versions 1.0 dated 2014-01-27 and 1.1 dated 2014-04-08
Description: rTensor is a set of tools for creation, manipulation, and modeling
of tensors with arbitrary number of modes. A tensor in the context of data
analysis is a multidimensional array. rTensor does this by providing a S4
class 'Tensor' that wraps around the base 'array' class. rTensor also
provides common tensor operations as methods, including matrix unfolding,
summing/averaging across modes, calculating the Frobenius norm, and taking
the inner product between two tensors. Familiar array operations are
overloaded, such as index subsetting via '[' and element-wise operations.
rTensor also implements various tensor decomposition, including CP, GLRAM,
MPCA, PVD, and Tucker. For tensors with 3 modes, rTensor also implements
transpose, product, and SVD, as defined in Kilmer et al. (2013). Some
auxiliary functions include the Khatri-Rao product, Kronecker product, and
the Hamadard product for a list of matrices. Development of rTensor has
been generously supported by Cornell's Department of Statistical Science.
Author: James Li and Jacob Bien and Martin Wells
Maintainer: James Li
rTensor-1.0/rTensor/man/getData-methods.Rd |only
rTensor-1.0/rTensor/man/getModes-methods.Rd |only
rTensor-1.0/rTensor/man/getNumModes-methods.Rd |only
rTensor-1.0/rTensor/man/sweep-methods.Rd |only
rTensor-1.1/rTensor/DESCRIPTION | 19 -
rTensor-1.1/rTensor/MD5 | 67 ++---
rTensor-1.1/rTensor/NAMESPACE | 8
rTensor-1.1/rTensor/NEWS |only
rTensor-1.1/rTensor/R/rTensor_Class.R | 334 ++++++++++++-------------
rTensor-1.1/rTensor/R/rTensor_Decomp.R | 193 ++++++++------
rTensor-1.1/rTensor/R/rTensor_Misc.R | 8
rTensor-1.1/rTensor/man/Ops-methods.Rd | 4
rTensor-1.1/rTensor/man/Tensor-class.Rd | 57 ++--
rTensor-1.1/rTensor/man/cp.Rd | 22 -
rTensor-1.1/rTensor/man/cs_unfold-methods.Rd | 15 -
rTensor-1.1/rTensor/man/dim-methods.Rd | 8
rTensor-1.1/rTensor/man/extract-methods.Rd | 20 +
rTensor-1.1/rTensor/man/fnorm-methods.Rd | 2
rTensor-1.1/rTensor/man/head-methods.Rd | 2
rTensor-1.1/rTensor/man/hosvd.Rd | 18 -
rTensor-1.1/rTensor/man/image-methods.Rd |only
rTensor-1.1/rTensor/man/innerProd-methods.Rd | 4
rTensor-1.1/rTensor/man/modeMean-methods.Rd | 12
rTensor-1.1/rTensor/man/modeSum-methods.Rd | 12
rTensor-1.1/rTensor/man/mpca.Rd | 22 -
rTensor-1.1/rTensor/man/print-methods.Rd | 2
rTensor-1.1/rTensor/man/pvd.Rd | 16 -
rTensor-1.1/rTensor/man/rTensor-package.Rd | 2
rTensor-1.1/rTensor/man/rand_tensor.Rd | 2
rTensor-1.1/rTensor/man/rs_unfold-methods.Rd | 6
rTensor-1.1/rTensor/man/show-methods.Rd | 2
rTensor-1.1/rTensor/man/t-methods.Rd | 2
rTensor-1.1/rTensor/man/t_svd.Rd | 2
rTensor-1.1/rTensor/man/t_svd_reconstruct.Rd | 5
rTensor-1.1/rTensor/man/tail-methods.Rd | 2
rTensor-1.1/rTensor/man/tperm-methods.Rd |only
rTensor-1.1/rTensor/man/tucker.Rd | 24 -
rTensor-1.1/rTensor/man/unfold-methods.Rd | 18 -
38 files changed, 482 insertions(+), 428 deletions(-)
Title: Multivariate Normality Tests
Diff between MVN versions 3.2 dated 2014-04-07 and 3.3 dated 2014-04-08
Description: Assessing the assumption of multivariate normality is required by many parametric multivariate statistical methods, such as discriminant analysis, principal component analysis, MANOVA, etc. Here, we present an R package to asses multivariate normality. The MVN package contains three most widely used multivariate normality tests, including Mardia's, Henze-Zirkler's and Royston's multivariate normality tests.
Author: Selcuk Korkmaz and Dincer Goksuluk
Maintainer: Selcuk Korkmaz
DESCRIPTION | 8 ++++----
MD5 | 14 +++++++-------
R/classes.R | 19 +++++++++++++------
R/hzTest.R | 1 -
inst/doc/MVN.Rnw | 2 +-
inst/doc/MVN.pdf |binary
man/MVN-package.Rd | 1 +
vignettes/MVN.Rnw | 2 +-
8 files changed, 27 insertions(+), 20 deletions(-)
Title: Social Relations Analyses with roles ("Family SRM")
Diff between fSRM versions 0.3.2 dated 2014-02-06 and 0.3.4 dated 2014-04-08
Description: The package computes Social Relations Analysis with roles ("Family
SRM"), using a structural equation modeling approach. Groups ranging from
three members up to an unlimited number of members are supported and the
mean structure can be computed. Means and variances can be compared between
different groups of families and between roles.
Author: Felix Schönbrodt, Lara Stas, Tom Loeys
Maintainer: Felix Schönbrodt
fSRM-0.3.2/fSRM/R/0-skinning.R |only
fSRM-0.3.4/fSRM/DESCRIPTION | 12 ++++----
fSRM-0.3.4/fSRM/MD5 | 20 +++++++-------
fSRM-0.3.4/fSRM/NAMESPACE | 2 +
fSRM-0.3.4/fSRM/R/buildSRMSyntaxLatent.R | 40 +++++++++++++++++++++++-----
fSRM-0.3.4/fSRM/R/fSRM.R | 6 ++--
fSRM-0.3.4/fSRM/R/import.R |only
fSRM-0.3.4/fSRM/R/print.fSRM.R | 6 +++-
fSRM-0.3.4/fSRM/R/zzz.R |only
fSRM-0.3.4/fSRM/inst/NEWS.Rd | 10 +++++++
fSRM-0.3.4/fSRM/man/buildSRMSyntaxLatent.Rd | 7 ++++
fSRM-0.3.4/fSRM/man/fSRM.Rd | 8 ++++-
fSRM-0.3.4/fSRM/man/import.Rd |only
13 files changed, 84 insertions(+), 27 deletions(-)
Title: Weighted Estimation in Cox Regression
Diff between coxphw versions 2.13 dated 2013-11-04 and 3.0.0 dated 2014-04-08
Description: This package implements weighted estimation in Cox regression as proposed by
Schemper, Wakounig and Heinze (Statistics in Medicine, 2009). Weighted Cox regression
provides unbiased average hazard ratio estimates also in case of non-proportional hazards.
Approximated generalized concordance probability an effect size measure for clear-cut
decisions can be obtained.
Additionally estimation of nonlinear effects using fractional polynomials similar to the
MFP algorithm (Royston, Sauerbrei, 2008) is provided. This feature can also be used to
estimate the interaction of a covariate with a nonlinear function of time.
Author: R by Meinhard Ploner, Georg Heinze, Daniela Dunkler, Fortran by Georg Heinze
Maintainer: Georg Heinze
coxphw-2.13/coxphw/R/coxphw.fit.R |only
coxphw-2.13/coxphw/R/coxphw.wei.R |only
coxphw-2.13/coxphw/R/decomposeSurv.R |only
coxphw-2.13/coxphw/R/fp.scale.R |only
coxphw-2.13/coxphw/R/fp.scale.coefs.R |only
coxphw-2.13/coxphw/R/plotfp.r |only
coxphw-2.13/coxphw/man/PT.rd |only
coxphw-2.13/coxphw/man/RI.rd |only
coxphw-2.13/coxphw/man/Rlog.rd |only
coxphw-2.13/coxphw/man/Rpow2.rd |only
coxphw-2.13/coxphw/man/Rpow3.rd |only
coxphw-2.13/coxphw/man/RpowM0.5.rd |only
coxphw-2.13/coxphw/man/RpowM1.rd |only
coxphw-2.13/coxphw/man/RpowM2.rd |only
coxphw-2.13/coxphw/man/Rsqrt.rd |only
coxphw-2.13/coxphw/man/fp.power.rd |only
coxphw-2.13/coxphw/man/plotfp.Rd |only
coxphw-2.13/coxphw/man/plotw.rd |only
coxphw-2.13/coxphw/man/pow2.rd |only
coxphw-2.13/coxphw/man/pow3.rd |only
coxphw-2.13/coxphw/man/powM0.5.rd |only
coxphw-2.13/coxphw/man/powM1.rd |only
coxphw-2.13/coxphw/man/powM2.rd |only
coxphw-3.0.0/coxphw/Changelog |only
coxphw-3.0.0/coxphw/DESCRIPTION | 25 +
coxphw-3.0.0/coxphw/MD5 | 65 ++--
coxphw-3.0.0/coxphw/NAMESPACE | 29 -
coxphw-3.0.0/coxphw/R/coef.coxphw.r |only
coxphw-3.0.0/coxphw/R/concord.r |only
coxphw-3.0.0/coxphw/R/confint.coxphw.r |only
coxphw-3.0.0/coxphw/R/coxphw.fit.r |only
coxphw-3.0.0/coxphw/R/coxphw.r | 348 ++++++++++-------------
coxphw-3.0.0/coxphw/R/coxphw.wei.r |only
coxphw-3.0.0/coxphw/R/decomposeSurv.r |only
coxphw-3.0.0/coxphw/R/fp.scale.coefs.r |only
coxphw-3.0.0/coxphw/R/fp.scale.r |only
coxphw-3.0.0/coxphw/R/plotshape.r |only
coxphw-3.0.0/coxphw/R/plotw.r |only
coxphw-3.0.0/coxphw/R/print.r |only
coxphw-3.0.0/coxphw/R/summary.r |only
coxphw-3.0.0/coxphw/R/vcov.coxphw.r |only
coxphw-3.0.0/coxphw/R/wald.r |only
coxphw-3.0.0/coxphw/data |only
coxphw-3.0.0/coxphw/inst |only
coxphw-3.0.0/coxphw/man/PT.Rd |only
coxphw-3.0.0/coxphw/man/biofeedback.Rd |only
coxphw-3.0.0/coxphw/man/coef.coxphw.Rd |only
coxphw-3.0.0/coxphw/man/concord.Rd |only
coxphw-3.0.0/coxphw/man/confint.coxphw.Rd |only
coxphw-3.0.0/coxphw/man/coxphw-package.Rd |only
coxphw-3.0.0/coxphw/man/coxphw.Rd | 444 ++++++++++++++++--------------
coxphw-3.0.0/coxphw/man/fp.power.Rd |only
coxphw-3.0.0/coxphw/man/gastric.Rd |only
coxphw-3.0.0/coxphw/man/plotshape.Rd |only
coxphw-3.0.0/coxphw/man/plotw.Rd |only
coxphw-3.0.0/coxphw/man/print.coxphw.Rd |only
coxphw-3.0.0/coxphw/man/summary.coxphw.Rd |only
coxphw-3.0.0/coxphw/man/vcov.coxphw.Rd |only
coxphw-3.0.0/coxphw/man/wald.Rd |only
coxphw-3.0.0/coxphw/src/coxphw.f90 | 21 -
60 files changed, 475 insertions(+), 457 deletions(-)
Title: Boost C++ header files
Diff between BH versions 1.51.0-4 dated 2014-01-02 and 1.54.0-1 dated 2014-04-08
Description: Boost provides free peer-reviewed portable C++ source
libraries. A large part of Boost is provided as C++ template code
which is resolved entirely at compile-time without linking. This
package aims to provide the most useful subset of Boost libraries
for template use among CRAN package. By placing these libraries in
this package, we offer a more efficient distribution system for CRAN
as replication of this code in the sources of other packages is
avoided.
Author: Dirk Eddelbuettel, John W. Emerson and Michael J. Kane
Maintainer: Dirk Eddelbuettel
BH-1.54.0-1/DESCRIPTION | 8
BH-1.54.0-1/MD5 | 2390 ++++---
BH-1.54.0-1/README.md | 15
BH-1.54.0-1/inst/NEWS.Rd | 10
BH-1.54.0-1/inst/include/boost/accumulators |only
BH-1.54.0-1/inst/include/boost/algorithm/cxx11/copy_if.hpp | 27
BH-1.54.0-1/inst/include/boost/algorithm/cxx11/is_partitioned.hpp | 6
BH-1.54.0-1/inst/include/boost/algorithm/cxx11/is_permutation.hpp | 167
BH-1.54.0-1/inst/include/boost/algorithm/cxx14 |only
BH-1.54.0-1/inst/include/boost/algorithm/gather.hpp |only
BH-1.54.0-1/inst/include/boost/algorithm/hex.hpp | 50
BH-1.54.0-1/inst/include/boost/algorithm/minmax_element.hpp | 6
BH-1.54.0-1/inst/include/boost/algorithm/searching/boyer_moore.hpp | 4
BH-1.54.0-1/inst/include/boost/algorithm/searching/boyer_moore_horspool.hpp | 5
BH-1.54.0-1/inst/include/boost/algorithm/searching/knuth_morris_pratt.hpp | 5
BH-1.54.0-1/inst/include/boost/algorithm/string/detail/find_format.hpp | 10
BH-1.54.0-1/inst/include/boost/algorithm/string/detail/find_format_all.hpp | 10
BH-1.54.0-1/inst/include/boost/algorithm/string/detail/finder.hpp | 2
BH-1.54.0-1/inst/include/boost/algorithm/string/detail/finder_regex.hpp | 4
BH-1.54.0-1/inst/include/boost/algorithm/string/find.hpp | 4
BH-1.54.0-1/inst/include/boost/algorithm/string/find_iterator.hpp | 7
BH-1.54.0-1/inst/include/boost/algorithm/string/formatter.hpp | 4
BH-1.54.0-1/inst/include/boost/algorithm/string/predicate_facade.hpp | 2
BH-1.54.0-1/inst/include/boost/algorithm/string/regex_find_format.hpp | 2
BH-1.54.0-1/inst/include/boost/algorithm/string/trim.hpp | 12
BH-1.54.0-1/inst/include/boost/algorithm/string/trim_all.hpp | 8
BH-1.54.0-1/inst/include/boost/algorithm/string_regex.hpp | 2
BH-1.54.0-1/inst/include/boost/archive/archive_exception.hpp | 10
BH-1.54.0-1/inst/include/boost/archive/impl/basic_text_iprimitive.ipp | 18
BH-1.54.0-1/inst/include/boost/archive/impl/basic_text_oprimitive.ipp | 2
BH-1.54.0-1/inst/include/boost/archive/iterators/binary_from_base64.hpp | 2
BH-1.54.0-1/inst/include/boost/archive/iterators/istream_iterator.hpp | 24
BH-1.54.0-1/inst/include/boost/archive/iterators/transform_width.hpp | 138
BH-1.54.0-1/inst/include/boost/assert.hpp | 7
BH-1.54.0-1/inst/include/boost/atomic |only
BH-1.54.0-1/inst/include/boost/atomic.hpp |only
BH-1.54.0-1/inst/include/boost/chrono/config.hpp | 58
BH-1.54.0-1/inst/include/boost/chrono/detail/inlined/win/chrono.hpp | 20
BH-1.54.0-1/inst/include/boost/chrono/detail/static_assert.hpp | 2
BH-1.54.0-1/inst/include/boost/chrono/duration.hpp | 43
BH-1.54.0-1/inst/include/boost/chrono/system_clocks.hpp | 2
BH-1.54.0-1/inst/include/boost/chrono/time_point.hpp | 11
BH-1.54.0-1/inst/include/boost/config/auto_link.hpp | 105
BH-1.54.0-1/inst/include/boost/config/compiler/borland.hpp | 1
BH-1.54.0-1/inst/include/boost/config/compiler/clang.hpp | 25
BH-1.54.0-1/inst/include/boost/config/compiler/codegear.hpp | 1
BH-1.54.0-1/inst/include/boost/config/compiler/common_edg.hpp | 1
BH-1.54.0-1/inst/include/boost/config/compiler/cray.hpp | 1
BH-1.54.0-1/inst/include/boost/config/compiler/digitalmars.hpp | 1
BH-1.54.0-1/inst/include/boost/config/compiler/gcc.hpp | 34
BH-1.54.0-1/inst/include/boost/config/compiler/gcc_xml.hpp | 3
BH-1.54.0-1/inst/include/boost/config/compiler/hp_acc.hpp | 1
BH-1.54.0-1/inst/include/boost/config/compiler/intel.hpp | 2
BH-1.54.0-1/inst/include/boost/config/compiler/metrowerks.hpp | 1
BH-1.54.0-1/inst/include/boost/config/compiler/mpw.hpp | 1
BH-1.54.0-1/inst/include/boost/config/compiler/pathscale.hpp | 1
BH-1.54.0-1/inst/include/boost/config/compiler/pgi.hpp | 1
BH-1.54.0-1/inst/include/boost/config/compiler/sunpro_cc.hpp | 1
BH-1.54.0-1/inst/include/boost/config/compiler/vacpp.hpp | 5
BH-1.54.0-1/inst/include/boost/config/compiler/visualc.hpp | 36
BH-1.54.0-1/inst/include/boost/config/platform/vxworks.hpp | 368 +
BH-1.54.0-1/inst/include/boost/config/platform/win32.hpp | 4
BH-1.54.0-1/inst/include/boost/config/select_compiler_config.hpp | 8
BH-1.54.0-1/inst/include/boost/config/stdlib/dinkumware.hpp | 13
BH-1.54.0-1/inst/include/boost/config/stdlib/libstdcpp3.hpp | 3
BH-1.54.0-1/inst/include/boost/config/suffix.hpp | 64
BH-1.54.0-1/inst/include/boost/container/allocator_traits.hpp | 67
BH-1.54.0-1/inst/include/boost/container/container_fwd.hpp | 52
BH-1.54.0-1/inst/include/boost/container/deque.hpp | 1579 ++--
BH-1.54.0-1/inst/include/boost/container/detail/adaptive_node_pool_impl.hpp | 716 +-
BH-1.54.0-1/inst/include/boost/container/detail/advanced_insert_int.hpp | 504 -
BH-1.54.0-1/inst/include/boost/container/detail/algorithms.hpp | 24
BH-1.54.0-1/inst/include/boost/container/detail/allocator_version_traits.hpp |only
BH-1.54.0-1/inst/include/boost/container/detail/destroyers.hpp | 116
BH-1.54.0-1/inst/include/boost/container/detail/flat_tree.hpp | 372 -
BH-1.54.0-1/inst/include/boost/container/detail/iterators.hpp | 109
BH-1.54.0-1/inst/include/boost/container/detail/memory_util.hpp | 6
BH-1.54.0-1/inst/include/boost/container/detail/multiallocation_chain.hpp | 162
BH-1.54.0-1/inst/include/boost/container/detail/node_alloc_holder.hpp | 167
BH-1.54.0-1/inst/include/boost/container/detail/node_pool_impl.hpp | 34
BH-1.54.0-1/inst/include/boost/container/detail/pair.hpp | 5
BH-1.54.0-1/inst/include/boost/container/detail/pool_common.hpp | 2
BH-1.54.0-1/inst/include/boost/container/detail/preprocessor.hpp | 107
BH-1.54.0-1/inst/include/boost/container/detail/tree.hpp | 194
BH-1.54.0-1/inst/include/boost/container/detail/type_traits.hpp | 4
BH-1.54.0-1/inst/include/boost/container/detail/utilities.hpp | 1005 ++
BH-1.54.0-1/inst/include/boost/container/detail/workaround.hpp | 16
BH-1.54.0-1/inst/include/boost/container/flat_map.hpp | 976 +-
BH-1.54.0-1/inst/include/boost/container/flat_set.hpp | 958 +-
BH-1.54.0-1/inst/include/boost/container/list.hpp | 1303 ++-
BH-1.54.0-1/inst/include/boost/container/map.hpp | 865 +-
BH-1.54.0-1/inst/include/boost/container/scoped_allocator.hpp | 171
BH-1.54.0-1/inst/include/boost/container/scoped_allocator_fwd.hpp | 6
BH-1.54.0-1/inst/include/boost/container/set.hpp | 748 +-
BH-1.54.0-1/inst/include/boost/container/slist.hpp | 1499 ++--
BH-1.54.0-1/inst/include/boost/container/stable_vector.hpp | 1793 ++---
BH-1.54.0-1/inst/include/boost/container/static_vector.hpp |only
BH-1.54.0-1/inst/include/boost/container/string.hpp | 1594 ++--
BH-1.54.0-1/inst/include/boost/container/throw_exception.hpp |only
BH-1.54.0-1/inst/include/boost/container/vector.hpp | 2633 ++++---
BH-1.54.0-1/inst/include/boost/date_time/c_time.hpp | 2
BH-1.54.0-1/inst/include/boost/date_time/date.hpp | 6
BH-1.54.0-1/inst/include/boost/date_time/date_duration.hpp | 18
BH-1.54.0-1/inst/include/boost/date_time/date_facet.hpp | 11
BH-1.54.0-1/inst/include/boost/date_time/date_formatting.hpp | 6
BH-1.54.0-1/inst/include/boost/date_time/date_generators.hpp | 70
BH-1.54.0-1/inst/include/boost/date_time/date_iterator.hpp | 30
BH-1.54.0-1/inst/include/boost/date_time/date_names_put.hpp | 52
BH-1.54.0-1/inst/include/boost/date_time/date_parsing.hpp | 4
BH-1.54.0-1/inst/include/boost/date_time/dst_rules.hpp | 4
BH-1.54.0-1/inst/include/boost/date_time/dst_transition_generators.hpp | 2
BH-1.54.0-1/inst/include/boost/date_time/filetime_functions.hpp | 2
BH-1.54.0-1/inst/include/boost/date_time/format_date_parser.hpp | 18
BH-1.54.0-1/inst/include/boost/date_time/gregorian/greg_serialize.hpp | 30
BH-1.54.0-1/inst/include/boost/date_time/gregorian_calendar.ipp | 2
BH-1.54.0-1/inst/include/boost/date_time/local_time/custom_time_zone.hpp | 12
BH-1.54.0-1/inst/include/boost/date_time/local_time/local_date_time.hpp | 4
BH-1.54.0-1/inst/include/boost/date_time/local_time/posix_time_zone.hpp | 4
BH-1.54.0-1/inst/include/boost/date_time/period_formatter.hpp | 10
BH-1.54.0-1/inst/include/boost/date_time/posix_time/posix_time_config.hpp | 4
BH-1.54.0-1/inst/include/boost/date_time/posix_time/time_serialize.hpp | 4
BH-1.54.0-1/inst/include/boost/date_time/strings_from_facet.hpp | 8
BH-1.54.0-1/inst/include/boost/date_time/time_duration.hpp | 23
BH-1.54.0-1/inst/include/boost/date_time/time_facet.hpp | 2
BH-1.54.0-1/inst/include/boost/date_time/time_iterator.hpp | 34
BH-1.54.0-1/inst/include/boost/date_time/time_parsing.hpp | 9
BH-1.54.0-1/inst/include/boost/date_time/time_zone_base.hpp | 18
BH-1.54.0-1/inst/include/boost/date_time/tz_db_base.hpp | 12
BH-1.54.0-1/inst/include/boost/date_time/wrapping_int.hpp | 54
BH-1.54.0-1/inst/include/boost/detail/atomic_redef_macros.hpp |only
BH-1.54.0-1/inst/include/boost/detail/atomic_undef_macros.hpp |only
BH-1.54.0-1/inst/include/boost/detail/call_traits.hpp | 20
BH-1.54.0-1/inst/include/boost/detail/endian.hpp | 56
BH-1.54.0-1/inst/include/boost/detail/interlocked.hpp | 17
BH-1.54.0-1/inst/include/boost/detail/is_function_ref_tester.hpp | 3
BH-1.54.0-1/inst/include/boost/detail/lightweight_test.hpp | 65
BH-1.54.0-1/inst/include/boost/detail/scoped_enum_emulation.hpp | 20
BH-1.54.0-1/inst/include/boost/exception/all.hpp | 2
BH-1.54.0-1/inst/include/boost/exception/current_exception_cast.hpp | 2
BH-1.54.0-1/inst/include/boost/exception/detail/error_info_impl.hpp | 8
BH-1.54.0-1/inst/include/boost/exception/detail/exception_ptr.hpp | 6
BH-1.54.0-1/inst/include/boost/exception/detail/is_output_streamable.hpp | 2
BH-1.54.0-1/inst/include/boost/exception/detail/object_hex_dump.hpp | 2
BH-1.54.0-1/inst/include/boost/exception/detail/type_info.hpp | 2
BH-1.54.0-1/inst/include/boost/exception/diagnostic_information.hpp | 29
BH-1.54.0-1/inst/include/boost/exception/errinfo_errno.hpp | 2
BH-1.54.0-1/inst/include/boost/exception/exception.hpp | 2
BH-1.54.0-1/inst/include/boost/exception/get_error_info.hpp | 2
BH-1.54.0-1/inst/include/boost/exception/info.hpp | 25
BH-1.54.0-1/inst/include/boost/exception/info_tuple.hpp | 2
BH-1.54.0-1/inst/include/boost/exception/to_string.hpp | 7
BH-1.54.0-1/inst/include/boost/exception/to_string_stub.hpp | 10
BH-1.54.0-1/inst/include/boost/foreach.hpp | 24
BH-1.54.0-1/inst/include/boost/function/function_template.hpp | 53
BH-1.54.0-1/inst/include/boost/function_types/is_member_function_pointer.hpp |only
BH-1.54.0-1/inst/include/boost/function_types/is_member_pointer.hpp |only
BH-1.54.0-1/inst/include/boost/functional/hash/detail/float_functions.hpp | 90
BH-1.54.0-1/inst/include/boost/functional/hash/detail/hash_float.hpp | 192
BH-1.54.0-1/inst/include/boost/functional/hash/extensions.hpp | 16
BH-1.54.0-1/inst/include/boost/functional/hash/hash.hpp | 38
BH-1.54.0-1/inst/include/boost/fusion/adapted/struct/detail/define_struct_inline.hpp | 239
BH-1.54.0-1/inst/include/boost/fusion/algorithm.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/algorithm/iteration.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/algorithm/iteration/accumulate.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/algorithm/iteration/accumulate_fwd.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/algorithm/iteration/detail/preprocessed/fold.hpp | 2
BH-1.54.0-1/inst/include/boost/fusion/algorithm/iteration/detail/preprocessed/reverse_fold.hpp | 2
BH-1.54.0-1/inst/include/boost/fusion/algorithm/iteration/detail/preprocessed/reverse_iter_fold.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/algorithm/iteration/reverse_iter_fold.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/algorithm/iteration/reverse_iter_fold_fwd.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/algorithm/query.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/algorithm/query/all.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/algorithm/query/count.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/algorithm/query/count_if.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/algorithm/query/detail/all.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/algorithm/query/detail/any.hpp | 2
BH-1.54.0-1/inst/include/boost/fusion/algorithm/query/detail/count.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/algorithm/query/detail/count_if.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/algorithm/query/none.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/algorithm/transformation.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/algorithm/transformation/clear.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/algorithm/transformation/detail |only
BH-1.54.0-1/inst/include/boost/fusion/algorithm/transformation/filter.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/algorithm/transformation/remove_if.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/algorithm/transformation/replace.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/algorithm/transformation/replace_if.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/algorithm/transformation/zip.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/container.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/container/deque.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/container/deque/back_extended_deque.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/container/deque/convert.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/container/deque/deque.hpp |only
BH-1.54.0-1/inst/include/boost/fusion/container/deque/deque_fwd.hpp | 6
BH-1.54.0-1/inst/include/boost/fusion/container/deque/deque_iterator.hpp |only
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BH-1.54.0-1/inst/include/boost/regex/v4/regex_format.hpp | 9
BH-1.54.0-1/inst/include/boost/regex/v4/regex_split.hpp | 2
BH-1.54.0-1/inst/include/boost/regex/v4/regex_traits_defaults.hpp | 34
BH-1.54.0-1/inst/include/boost/serialization/smart_cast.hpp | 6
BH-1.54.0-1/inst/include/boost/smart_ptr/allocate_shared_array.hpp |only
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/allocate_array_helper.hpp |only
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BH-1.54.0-1/inst/include/boost/smart_ptr/detail/operator_bool.hpp | 25
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/shared_count.hpp | 85
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_convertible.hpp | 15
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_counted_base.hpp | 18
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_counted_base_acc_ia64.hpp | 1
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_counted_base_aix.hpp | 1
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_counted_base_cw_ppc.hpp | 1
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_counted_base_cw_x86.hpp | 1
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_counted_base_gcc_ia64.hpp | 1
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_counted_base_gcc_mips.hpp | 1
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_counted_base_gcc_ppc.hpp | 1
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_counted_base_gcc_sparc.hpp | 1
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_counted_base_gcc_x86.hpp | 1
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_counted_base_nt.hpp | 1
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_counted_base_pt.hpp | 1
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_counted_base_snc_ps3.hpp |only
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_counted_base_solaris.hpp | 1
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_counted_base_spin.hpp | 1
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_counted_base_sync.hpp | 1
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_counted_base_vacpp_ppc.hpp | 1
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_counted_base_w32.hpp | 1
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_counted_impl.hpp | 15
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_forward.hpp |only
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_has_sync.hpp | 22
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_if_array.hpp |only
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/sp_nullptr_t.hpp |only
BH-1.54.0-1/inst/include/boost/smart_ptr/detail/spinlock_gcc_arm.hpp | 17
BH-1.54.0-1/inst/include/boost/smart_ptr/enable_shared_from_raw.hpp |only
BH-1.54.0-1/inst/include/boost/smart_ptr/enable_shared_from_this.hpp | 8
BH-1.54.0-1/inst/include/boost/smart_ptr/intrusive_ptr.hpp | 39
BH-1.54.0-1/inst/include/boost/smart_ptr/make_shared.hpp | 969 --
BH-1.54.0-1/inst/include/boost/smart_ptr/make_shared_array.hpp |only
BH-1.54.0-1/inst/include/boost/smart_ptr/make_shared_object.hpp |only
BH-1.54.0-1/inst/include/boost/smart_ptr/scoped_array.hpp | 39
BH-1.54.0-1/inst/include/boost/smart_ptr/scoped_ptr.hpp | 36
BH-1.54.0-1/inst/include/boost/smart_ptr/shared_array.hpp | 155
BH-1.54.0-1/inst/include/boost/smart_ptr/shared_ptr.hpp | 570 +
BH-1.54.0-1/inst/include/boost/smart_ptr/weak_ptr.hpp | 67
BH-1.54.0-1/inst/include/boost/spirit/home/classic/iterator/multi_pass.hpp | 8
BH-1.54.0-1/inst/include/boost/spirit/home/karma.hpp | 4
BH-1.54.0-1/inst/include/boost/spirit/home/karma/auto/auto.hpp | 2
BH-1.54.0-1/inst/include/boost/spirit/home/karma/binary/binary.hpp | 2
BH-1.54.0-1/inst/include/boost/spirit/home/karma/char/char.hpp | 14
BH-1.54.0-1/inst/include/boost/spirit/home/karma/char/char_class.hpp | 6
BH-1.54.0-1/inst/include/boost/spirit/home/karma/detail/indirect_iterator.hpp | 8
BH-1.54.0-1/inst/include/boost/spirit/home/karma/detail/output_iterator.hpp | 42
BH-1.54.0-1/inst/include/boost/spirit/home/karma/numeric/bool.hpp | 2
BH-1.54.0-1/inst/include/boost/spirit/home/karma/numeric/detail/numeric_utils.hpp | 158
BH-1.54.0-1/inst/include/boost/spirit/home/karma/numeric/detail/real_utils.hpp | 4
BH-1.54.0-1/inst/include/boost/spirit/home/karma/numeric/int.hpp | 6
BH-1.54.0-1/inst/include/boost/spirit/home/karma/numeric/real.hpp | 3
BH-1.54.0-1/inst/include/boost/spirit/home/karma/numeric/uint.hpp | 2
BH-1.54.0-1/inst/include/boost/spirit/home/karma/operator/list.hpp | 32
BH-1.54.0-1/inst/include/boost/spirit/home/karma/stream/stream.hpp | 50
BH-1.54.0-1/inst/include/boost/spirit/home/karma/string/lit.hpp | 2
BH-1.54.0-1/inst/include/boost/spirit/home/lex/lexer/lexertl/functor_data.hpp | 2
BH-1.54.0-1/inst/include/boost/spirit/home/lex/lexer/lexertl/iterator.hpp | 30
BH-1.54.0-1/inst/include/boost/spirit/home/lex/lexer/support_functions.hpp | 6
BH-1.54.0-1/inst/include/boost/spirit/home/qi/stream/stream.hpp | 11
BH-1.54.0-1/inst/include/boost/spirit/home/support/algorithm/any_if.hpp | 2
BH-1.54.0-1/inst/include/boost/spirit/home/support/algorithm/any_if_ns.hpp | 2
BH-1.54.0-1/inst/include/boost/spirit/home/support/assert_msg.hpp | 35
BH-1.54.0-1/inst/include/boost/spirit/home/support/attributes.hpp | 25
BH-1.54.0-1/inst/include/boost/spirit/home/support/detail/hold_any.hpp | 2
BH-1.54.0-1/inst/include/boost/spirit/home/support/detail/lexer/generator.hpp | 3
BH-1.54.0-1/inst/include/boost/spirit/home/support/detail/lexer/string_token.hpp | 3
BH-1.54.0-1/inst/include/boost/spirit/home/support/info.hpp | 2
BH-1.54.0-1/inst/include/boost/spirit/repository/home/karma/nonterminal/subrule.hpp | 4
BH-1.54.0-1/inst/include/boost/static_assert.hpp | 91
BH-1.54.0-1/inst/include/boost/system/error_code.hpp | 144
BH-1.54.0-1/inst/include/boost/system/system_error.hpp | 6
BH-1.54.0-1/inst/include/boost/test/utils/runtime/cla/parameter.hpp | 4
BH-1.54.0-1/inst/include/boost/test/utils/runtime/env/variable.hpp | 4
BH-1.54.0-1/inst/include/boost/thread/barrier.hpp | 8
BH-1.54.0-1/inst/include/boost/thread/detail/async_func.hpp |only
BH-1.54.0-1/inst/include/boost/thread/detail/config.hpp | 323
BH-1.54.0-1/inst/include/boost/thread/detail/delete.hpp | 18
BH-1.54.0-1/inst/include/boost/thread/detail/invoke.hpp |only
BH-1.54.0-1/inst/include/boost/thread/detail/is_convertible.hpp |only
BH-1.54.0-1/inst/include/boost/thread/detail/lockable_wrapper.hpp |only
BH-1.54.0-1/inst/include/boost/thread/detail/make_tuple_indices.hpp |only
BH-1.54.0-1/inst/include/boost/thread/detail/memory.hpp | 106
BH-1.54.0-1/inst/include/boost/thread/detail/move.hpp | 54
BH-1.54.0-1/inst/include/boost/thread/detail/thread.hpp | 294
BH-1.54.0-1/inst/include/boost/thread/detail/thread_group.hpp | 64
BH-1.54.0-1/inst/include/boost/thread/detail/thread_interruption.hpp | 5
BH-1.54.0-1/inst/include/boost/thread/exceptions.hpp | 2
BH-1.54.0-1/inst/include/boost/thread/future.hpp | 3159 +++++++--
BH-1.54.0-1/inst/include/boost/thread/future_error_code.hpp |only
BH-1.54.0-1/inst/include/boost/thread/is_locked_by_this_thread.hpp |only
BH-1.54.0-1/inst/include/boost/thread/lock_algorithms.hpp |only
BH-1.54.0-1/inst/include/boost/thread/lock_guard.hpp |only
BH-1.54.0-1/inst/include/boost/thread/lock_options.hpp |only
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BH-1.54.0-1/inst/include/boost/thread/lockable_traits.hpp |only
BH-1.54.0-1/inst/include/boost/thread/locks.hpp | 1821 -----
BH-1.54.0-1/inst/include/boost/thread/mutex.hpp | 34
BH-1.54.0-1/inst/include/boost/thread/once.hpp | 11
BH-1.54.0-1/inst/include/boost/thread/pthread/condition_variable.hpp | 100
BH-1.54.0-1/inst/include/boost/thread/pthread/condition_variable_fwd.hpp | 84
BH-1.54.0-1/inst/include/boost/thread/pthread/mutex.hpp | 139
BH-1.54.0-1/inst/include/boost/thread/pthread/once.hpp | 517 +
BH-1.54.0-1/inst/include/boost/thread/pthread/once_atomic.hpp |only
BH-1.54.0-1/inst/include/boost/thread/pthread/recursive_mutex.hpp | 33
BH-1.54.0-1/inst/include/boost/thread/pthread/shared_mutex.hpp | 287
BH-1.54.0-1/inst/include/boost/thread/pthread/thread_data.hpp | 99
BH-1.54.0-1/inst/include/boost/thread/pthread/thread_heap_alloc.hpp | 8
BH-1.54.0-1/inst/include/boost/thread/pthread/timespec.hpp | 106
BH-1.54.0-1/inst/include/boost/thread/recursive_mutex.hpp | 45
BH-1.54.0-1/inst/include/boost/thread/shared_mutex.hpp | 23
BH-1.54.0-1/inst/include/boost/thread/thread.hpp | 14
BH-1.54.0-1/inst/include/boost/thread/thread_only.hpp |only
BH-1.54.0-1/inst/include/boost/thread/v2/thread.hpp | 47
BH-1.54.0-1/inst/include/boost/thread/win32/basic_recursive_mutex.hpp | 10
BH-1.54.0-1/inst/include/boost/thread/win32/basic_timed_mutex.hpp | 19
BH-1.54.0-1/inst/include/boost/thread/win32/condition_variable.hpp | 35
BH-1.54.0-1/inst/include/boost/thread/win32/interlocked_read.hpp | 20
BH-1.54.0-1/inst/include/boost/thread/win32/mutex.hpp | 9
BH-1.54.0-1/inst/include/boost/thread/win32/once.hpp | 956 ++
BH-1.54.0-1/inst/include/boost/thread/win32/recursive_mutex.hpp | 9
BH-1.54.0-1/inst/include/boost/thread/win32/shared_mutex.hpp | 37
BH-1.54.0-1/inst/include/boost/thread/win32/thread_data.hpp | 94
BH-1.54.0-1/inst/include/boost/thread/win32/thread_heap_alloc.hpp | 103
BH-1.54.0-1/inst/include/boost/thread/win32/thread_primitives.hpp | 55
BH-1.54.0-1/inst/include/boost/thread/xtime.hpp | 3
BH-1.54.0-1/inst/include/boost/timer |only
BH-1.54.0-1/inst/include/boost/token_functions.hpp | 32
BH-1.54.0-1/inst/include/boost/type_traits.hpp | 4
BH-1.54.0-1/inst/include/boost/type_traits/add_lvalue_reference.hpp | 2
BH-1.54.0-1/inst/include/boost/type_traits/add_reference.hpp | 2
BH-1.54.0-1/inst/include/boost/type_traits/add_rvalue_reference.hpp | 8
BH-1.54.0-1/inst/include/boost/type_traits/common_type.hpp | 23
BH-1.54.0-1/inst/include/boost/type_traits/config.hpp | 2
BH-1.54.0-1/inst/include/boost/type_traits/detail/common_type_imp.hpp | 2
BH-1.54.0-1/inst/include/boost/type_traits/detail/has_binary_operator.hpp | 2
BH-1.54.0-1/inst/include/boost/type_traits/detail/is_function_ptr_tester.hpp | 2
BH-1.54.0-1/inst/include/boost/type_traits/has_trivial_move_assign.hpp |only
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BH-1.54.0-1/inst/include/boost/type_traits/intrinsics.hpp | 20
BH-1.54.0-1/inst/include/boost/type_traits/is_abstract.hpp | 2
BH-1.54.0-1/inst/include/boost/type_traits/is_array.hpp | 2
BH-1.54.0-1/inst/include/boost/type_traits/is_const.hpp | 2
BH-1.54.0-1/inst/include/boost/type_traits/is_convertible.hpp | 95
BH-1.54.0-1/inst/include/boost/type_traits/is_function.hpp | 7
BH-1.54.0-1/inst/include/boost/type_traits/is_integral.hpp | 7
BH-1.54.0-1/inst/include/boost/type_traits/is_nothrow_move_assignable.hpp |only
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BH-1.54.0-1/inst/include/boost/type_traits/is_pod.hpp | 4
BH-1.54.0-1/inst/include/boost/type_traits/is_rvalue_reference.hpp | 2
BH-1.54.0-1/inst/include/boost/type_traits/is_volatile.hpp | 2
BH-1.54.0-1/inst/include/boost/type_traits/make_signed.hpp | 16
BH-1.54.0-1/inst/include/boost/type_traits/make_unsigned.hpp | 16
BH-1.54.0-1/inst/include/boost/type_traits/remove_const.hpp | 2
BH-1.54.0-1/inst/include/boost/type_traits/remove_cv.hpp | 2
BH-1.54.0-1/inst/include/boost/type_traits/remove_reference.hpp | 2
BH-1.54.0-1/inst/include/boost/type_traits/remove_volatile.hpp | 2
BH-1.54.0-1/inst/include/boost/units/base_dimension.hpp |only
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BH-1.54.0-1/inst/include/boost/unordered/detail/allocate.hpp | 656 -
BH-1.54.0-1/inst/include/boost/unordered/detail/buckets.hpp | 1042 +--
BH-1.54.0-1/inst/include/boost/unordered/detail/equivalent.hpp | 461 -
BH-1.54.0-1/inst/include/boost/unordered/detail/extract_key.hpp | 49
BH-1.54.0-1/inst/include/boost/unordered/detail/table.hpp | 721 +-
BH-1.54.0-1/inst/include/boost/unordered/detail/unique.hpp | 306
BH-1.54.0-1/inst/include/boost/unordered/unordered_map.hpp | 130
BH-1.54.0-1/inst/include/boost/unordered/unordered_set.hpp | 130
BH-1.54.0-1/inst/include/boost/utility/addressof.hpp | 4
BH-1.54.0-1/inst/include/boost/utility/detail/result_of_iterate.hpp | 130
BH-1.54.0-1/inst/include/boost/utility/result_of.hpp | 107
BH-1.54.0-1/inst/include/boost/utility/string_ref.hpp |only
BH-1.54.0-1/inst/include/boost/utility/string_ref_fwd.hpp |only
BH-1.54.0-1/inst/include/boost/uuid/seed_rng.hpp | 12
BH-1.54.0-1/inst/include/boost/uuid/sha1.hpp | 16
BH-1.54.0-1/inst/include/boost/variant/detail/bCPU_holder.hpp | 7
BH-1.54.0-1/inst/include/boost/variant/detail/hash_variant.hpp | 3
BH-1.54.0-1/inst/include/boost/variant/detail/initializer.hpp | 27
BH-1.54.0-1/inst/include/boost/variant/detail/move.hpp | 8
BH-1.54.0-1/inst/include/boost/variant/detail/visitation_impl.hpp | 4
BH-1.54.0-1/inst/include/boost/variant/recursive_wrapper.hpp | 39
BH-1.54.0-1/inst/include/boost/variant/variant.hpp | 591 +
BH-1.54.0-1/inst/include/boost/version.hpp | 4
BH-1.54.0-1/man/BH-package.Rd | 4
1175 files changed, 36895 insertions(+), 27018 deletions(-)
Title: Singular Spectrum Analysis (SSA) tools for time series analysis
Diff between spectral.methods versions 0.7.2.124 dated 2014-04-07 and 0.7.2.125 dated 2014-04-08
More information about spectral.methods at CRAN
Description: This package contains some implementations of Singular Spectrum Analysis (SSA) for the gapfilling (gapfillSSA() ) and spectral decomposition (filterTseriesSSA() ) of time series. It contains the code used by Buttlar et. al. (2014), Nonlinear Processes in Geophysics (gapfillNcdf). In addition, the iterative SSA gapfilling of Kondrashov and Ghil (2006) is implemented. All SSA calculations are done via the truncated and fast SSA algorithm of Korobeneykov (2010) (package Rssa).
Author: Jannis v. Buttlar
Maintainer: Jannis v. Buttlar
DESCRIPTION | 12 ++++++------
MD5 | 2 +-
2 files changed, 7 insertions(+), 7 deletions(-)
Permanent link
Title: Goodness-of-fit tests for the Exponential and two-parameter
Weibull distributions
Diff between EWGoF versions 1.0 dated 2014-03-31 and 2.0 dated 2014-04-08
Description: This package contains a large number of the goodness-of-fit tests for the Exponential and Weibull distributions classified into families: the tests based on the empirical distribution function, the tests based on the probability plot, the tests based on the normalized spacings, the tests based on the Laplace transform and the likelihood based tests.
Author: Meryam KRIT
Maintainer: Meryam KRIT
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/BLOMEst.R | 4 ++--
R/WPP.test.R | 2 +-
4 files changed, 10 insertions(+), 10 deletions(-)
Title: Bridging the gap between qualitative data and quantitative
analysis
Diff between qdap versions 1.3.4 dated 2014-04-01 and 1.3.5 dated 2014-04-08
Description: This package automates many of the tasks associated with
quantitative discourse analysis of transcripts containing discourse
including frequency counts of sentence types, words, sentences, turns of
talk, syllables and other assorted analysis tasks. The package
provides parsing tools for preparing transcript data. Many functions
enable the user to aggregate data by any number of grouping variables
providing analysis and seamless integration with other R packages that
undertake higher level analysis and visualization of text. This affords
the user a more efficient and targeted analysis. qdap is designed for
transcript analysis, however, many functions are applicable to other areas
of Text Mining/Natural Language Processing.
Author: Bryan Goodrich [ctb],
Dason Kurkiewicz [ctb],
Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker
DESCRIPTION | 6
MD5 | 66 ++-
NAMESPACE | 15
NEWS | 34 +
R/cm_distance.R | 2
R/discourse_map.R | 4
R/end_mark.R | 320 ++++++++++++++++
R/formality.R | 652 +++++++++++++++++++++++++++++++++-
R/list2df.R | 10
R/polarity.R | 47 +-
R/qdap-package.R | 28 +
R/sentSplit.R | 1
data/raj.act.1POS.rda |only
inst/CITATION | 4
inst/doc/qdap_vignette.R | 13
inst/doc/qdap_vignette.Rmd | 35 +
inst/doc/qdap_vignette.html | 51 +-
inst/doc/tm_package_compatibility.pdf |binary
man/Animate.formality.Rd |only
man/cm_distance.Rd | 3
man/counts.end_mark_by.Rd |only
man/end_mark.Rd | 49 ++
man/formality.Rd | 124 ++++++
man/plot.animated_formality.Rd |only
man/plot.end_mark_by.Rd |only
man/plot.end_mark_by_count.Rd |only
man/plot.end_mark_by_preprocessed.Rd |only
man/plot.end_mark_by_proportion.Rd |only
man/plot.end_mark_by_score.Rd |only
man/polarity.Rd | 59 +--
man/preprocessed.end_mark_by.Rd |only
man/print.animated_discourse_map.Rd | 4
man/print.animated_formality.Rd |only
man/print.animated_polarity.Rd | 5
man/print.end_mark_by.Rd |only
man/print.end_mark_by_preprocessed.Rd |only
man/proportions.end_mark_by.Rd |only
man/raj.act.1POS.Rd |only
man/scores.end_mark_by.Rd |only
vignettes/imgs/tm_imgs |only
vignettes/qdap_vignette.Rmd | 35 +
41 files changed, 1412 insertions(+), 155 deletions(-)
Title: Analysis and visualization of tumor genome sequencing data.
Diff between sequenza versions 1.0.5 dated 2014-02-11 and 2.0.0 dated 2014-04-08
Description: This package provides tools to analyze NGS DNA-sequencing from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization.
Author: Francesco Favero, Andrea M. Marquard, Tejal Joshi, Aron C. Eklund
Maintainer: Francesco Favero
sequenza-1.0.5/sequenza/data/abf.data.abfreq.txt.gz |only
sequenza-1.0.5/sequenza/man/abf.data.Rd |only
sequenza-1.0.5/sequenza/man/plot.windows.Rd |only
sequenza-1.0.5/sequenza/man/read.abfreq.Rd |only
sequenza-1.0.5/sequenza/man/theoric.baf.Rd |only
sequenza-1.0.5/sequenza/man/varscan.Rd |only
sequenza-1.0.5/sequenza/man/window.values.Rd |only
sequenza-2.0.0/sequenza/DESCRIPTION | 12
sequenza-2.0.0/sequenza/MD5 | 83 +--
sequenza-2.0.0/sequenza/NAMESPACE | 4
sequenza-2.0.0/sequenza/NEWS | 19
sequenza-2.0.0/sequenza/R/analysis.R | 323 +++++------
sequenza-2.0.0/sequenza/R/bayes.R | 36 -
sequenza-2.0.0/sequenza/R/graphics.R | 62 +-
sequenza-2.0.0/sequenza/R/misc.R | 21
sequenza-2.0.0/sequenza/R/model.R | 32 -
sequenza-2.0.0/sequenza/R/next.R | 80 +-
sequenza-2.0.0/sequenza/R/workflows.R | 312 ++++++-----
sequenza-2.0.0/sequenza/data/CP.example.RData |binary
sequenza-2.0.0/sequenza/data/CPsnp.example.RData |binary
sequenza-2.0.0/sequenza/data/example.seqz.rda |only
sequenza-2.0.0/sequenza/data/example.seqz.txt.gz |only
sequenza-2.0.0/sequenza/exec/sequenza-utils.py | 544 ++------------------
sequenza-2.0.0/sequenza/inst/CITATION | 4
sequenza-2.0.0/sequenza/inst/doc/sequenza.R | 69 +-
sequenza-2.0.0/sequenza/inst/doc/sequenza.Rnw | 226 ++++----
sequenza-2.0.0/sequenza/inst/doc/sequenza.pdf |binary
sequenza-2.0.0/sequenza/inst/doc/sequenzaSNP.R | 19
sequenza-2.0.0/sequenza/inst/doc/sequenzaSNP.Rnw | 19
sequenza-2.0.0/sequenza/inst/doc/sequenzaSNP.pdf |binary
sequenza-2.0.0/sequenza/man/CP.data.Rd | 36 -
sequenza-2.0.0/sequenza/man/VarScan2seqz.Rd |only
sequenza-2.0.0/sequenza/man/baf.bayes.Rd | 37 -
sequenza-2.0.0/sequenza/man/baf.model.fit.Rd | 39 -
sequenza-2.0.0/sequenza/man/chromosome.view.Rd | 58 +-
sequenza-2.0.0/sequenza/man/cp.plot.Rd | 70 --
sequenza-2.0.0/sequenza/man/example.seqz.Rd |only
sequenza-2.0.0/sequenza/man/find.breaks.Rd | 36 -
sequenza-2.0.0/sequenza/man/gc.norm.Rd | 22
sequenza-2.0.0/sequenza/man/get.ci.Rd | 29 -
sequenza-2.0.0/sequenza/man/model.points.Rd | 6
sequenza-2.0.0/sequenza/man/mutation.table.Rd | 49 -
sequenza-2.0.0/sequenza/man/plotWindows.Rd |only
sequenza-2.0.0/sequenza/man/read.seqz.Rd |only
sequenza-2.0.0/sequenza/man/theoretical.baf.Rd |only
sequenza-2.0.0/sequenza/man/types.matrix.Rd | 2
sequenza-2.0.0/sequenza/man/windowValues.Rd |only
sequenza-2.0.0/sequenza/man/workflows.Rd | 72 +-
sequenza-2.0.0/sequenza/vignettes/sequenza.Rnw | 226 ++++----
sequenza-2.0.0/sequenza/vignettes/sequenzaSNP.Rnw | 19
50 files changed, 1127 insertions(+), 1439 deletions(-)
Title: Markov beta and gamma processes for modeling hazard rates
Diff between BGPhazard versions 0.9.2 dated 2013-11-28 and 1.0 dated 2014-04-08
Description: Computes the hazard rate estimate as described by Nieto-Barajas and Walker (2002) and Nieto-Barajas (2003)
Author: Garcia-Bueno, J. A. & Nieto-Barajas, L. E.
Maintainer: Jose Antonio Garcia Bueno
DESCRIPTION | 10 +++++-----
MD5 | 6 +++---
NAMESPACE | 1 +
man/BGPhazard-package.Rd | 6 +++---
4 files changed, 12 insertions(+), 11 deletions(-)