Title: Methods for Analyzing Multiple Response Categorical Variables
(MRCVs)
Description: The MRCV package provides functions for analyzing the association between
one single response categorical variable (SRCV) and one multiple response
categorical variable (MRCV), or between two or three MRCVs. A modified Pearson
chi-square statistic can be used to test for marginal independence for the one or
two MRCV case, or a more general loglinear modeling approach can be used to examine
various other structures of association for the two or three MRCV case. Bootstrap-
and asymptotic-based standardized residuals and model-predicted odds ratios are
available, in addition to other descriptive information.
Author: Natalie Koziol and Chris Bilder
Maintainer: Natalie Koziol
Diff between MRCV versions 0.3-0 dated 2014-03-26 and 0.3-1 dated 2014-04-10
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/BLfour.R | 10 +++++----- man/MRCV-package.Rd | 4 ++-- 4 files changed, 14 insertions(+), 14 deletions(-)
Title: Functions for creating summary tables for statistical reports.
Description: This package contains functions for generating tables for statistical reports written in Microsoft Word or LaTeX. There are functions for I-by-J frequency tables, comparison of means across levels of a categorical variable, generalized linear models, generalized estimating equations, and Cox proportional hazards regression. The package is intended to make it easier for researchers to translate results from statistical analyses in R to their reports or manuscripts.
Author: Dane R. Van Domelen
Maintainer: Dane R. Van Domelen
Diff between tab versions 1.0 dated 2014-01-18 and 2.1.1 dated 2014-04-10
tab-1.0/tab/R/tablin.R |only tab-1.0/tab/R/tablog.R |only tab-1.0/tab/man/tablin.Rd |only tab-1.0/tab/man/tablog.Rd |only tab-2.1.1/tab/DESCRIPTION | 17 +-- tab-2.1.1/tab/MD5 | 32 +++-- tab-2.1.1/tab/NAMESPACE | 3 tab-2.1.1/tab/R/formatp.R |only tab-2.1.1/tab/R/tabcox.R | 215 +++++++++++++++++++++++---------------- tab-2.1.1/tab/R/tabfreq.R | 111 ++++++++++++++------ tab-2.1.1/tab/R/tabgee.R |only tab-2.1.1/tab/R/tabglm.R |only tab-2.1.1/tab/R/tabmeans.R | 105 +++++++++++++------ tab-2.1.1/tab/data/d.rda |binary tab-2.1.1/tab/man/d.Rd | 10 + tab-2.1.1/tab/man/formatp.Rd |only tab-2.1.1/tab/man/tab-package.Rd | 58 +++++----- tab-2.1.1/tab/man/tabcox.Rd | 57 +++++++--- tab-2.1.1/tab/man/tabfreq.Rd | 75 +++++++++---- tab-2.1.1/tab/man/tabgee.Rd |only tab-2.1.1/tab/man/tabglm.Rd |only tab-2.1.1/tab/man/tabmeans.Rd | 58 +++++++--- 22 files changed, 484 insertions(+), 257 deletions(-)
Title: R package for somoclu
Description: Somoclu is a cluster-oriented implementation of self-organizing maps. It relies on MPI for distributing the workload, and it can be accelerated by CUDA on a GPU cluster. A sparse kernel is also included, which is useful for training maps on vector spaces generated in text mining processes.
Author: Peter Wittek [aut], Shichao Gao [cre]
Maintainer: Shichao Gao
Diff between Rsomoclu versions 1.3 dated 2014-04-07 and 1.3.1 dated 2014-04-10
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- R/Rsomoclu.R | 5 ----- data/rgbs.txt.gz |binary src/Makevars | 2 +- src/Makevars.win | 3 ++- src/Rsomoclu.cpp | 27 ++++----------------------- src/denseCpuKernels.cpp | 4 +++- src/somocluWrap.h | 17 ----------------- src/sparseCpuKernels.cpp | 5 ++++- tests/R_interface_test.R | 2 -- 11 files changed, 28 insertions(+), 65 deletions(-)
Title: Rcpp bindings for NumPy files
Description: This package use the cnpy library written by Carl Rogers to
provide read and write facilities for files created with (or for) the NumPy
extension for Python. Vectors and matrices of numeric types can be read or
written to and from files as well as compressed files. Support for integer
files is available if the package has been built with -std=c++11 which is
the default starting with release 0.2.3 following the release of R 3.1.0.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel
Diff between RcppCNPy versions 0.2.2 dated 2013-11-30 and 0.2.3 dated 2014-04-10
ChangeLog | 29 ++++ DESCRIPTION | 15 +- MD5 | 32 ++-- README.md | 4 build/vignette.rds |binary cleanup | 3 inst/NEWS.Rd | 12 + inst/doc/RcppCNPy-intro.R | 59 ++++++++ inst/doc/RcppCNPy-intro.Rnw | 293 ++++++++++++++----------------------------- inst/doc/RcppCNPy-intro.pdf |binary man/RcppCNPy-package.Rd | 16 +- src/Makevars | 7 - src/Makevars.win | 7 - src/cnpy.cpp | 4 src/cnpy.h | 2 src/cnpyMod.cpp | 16 -- vignettes/RcppCNPy-intro.Rnw | 293 ++++++++++++++----------------------------- 17 files changed, 349 insertions(+), 443 deletions(-)
Title: Convenient Tools for Working with Oracle Databases
Description: Easy-to-use functions to explore Oracle databases and import data
into R. User interface for the ROracle package.
Author: Arni Magnusson
Maintainer: Arni Magnusson
Diff between ora versions 2.0-0 dated 2013-06-19 and 2.0-1 dated 2014-04-10
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- NAMESPACE | 3 +++ NEWS | 8 ++++++++ R/desc.R | 2 +- 5 files changed, 22 insertions(+), 11 deletions(-)
Title: Multinomial Logit Model
Description: Time and memory efficient estimation of multinomial logit models using maximum likelihood method. Numerical optimization performed by Newton-Raphson method using an optimized, parallel C++ library to achieve fast computation of Hessian matrices. Motivated by large scale multiclass classification problems in econometrics and machine learning.
Author: Wang Zhiyu, Asad Hasan
Maintainer: Asad Hasan
Diff between mnlogit versions 1.1.0 dated 2014-03-21 and 1.1.1 dated 2014-04-10
ChangeLog | 3 +++ DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/likelihood.R | 7 +++++-- src/hessian.cc | 5 +++++ 5 files changed, 20 insertions(+), 9 deletions(-)
Title: General Recognition Theory
Description: Functions to generate and analyze data for psychology
experiments based on the General Recognition Theory.
Author: Kazunaga Matsuki
Maintainer: Kazunaga Matsuki
Diff between grt versions 0.1-2 dated 2011-01-20 and 0.2 dated 2014-04-10
DESCRIPTION | 14 - MD5 |only NAMESPACE | 63 +++-- R/gcjc.R |only R/glc.R | 539 ++++++++++++++++++++++++------------------------ R/grg.R | 1 R/ldb.R | 5 R/plot.gcjc.R |only data/subjdemo_cj.rda |only man/coef.glc.Rd | 9 man/extractAIC.glc.Rd | 77 +++--- man/gaborPatch.Rd | 2 man/gcjc.Rd |only man/gcjcStruct.Rd |only man/glc.Rd | 2 man/grt-package.Rd | 12 - man/logLik.glc.Rd | 63 +++-- man/logLik.glcStruct.Rd | 14 - man/plot.gcjc.Rd |only man/subjdemo_cj.Rd |only 20 files changed, 421 insertions(+), 380 deletions(-)
Title: Human readable data presentation
Description: This package provides clear, informative and colorful ways of
presenting the contents of data.frame, list, environment etc. in the
prompt. Ideally this package should be used in terminals supporting xterm
256 colour mode, e.g. the standard Ubuntu terminal. The Mac OS X terminal
(as of Snow Leopard) only support ANSI colour, which still works but
doesn't look as nice. On Windows systems no colouring is supported. If the
output of functions like 'whos' is a mess or somehow doesn't look like it
should check the help for the functions 'style' and 'style.mode' of the
'xtermStyle' package.
Author: Christofer Backlin
Maintainer: Christofer Backlin
Diff between dataview versions 1.4-8 dated 2012-07-19 and 2.0-9 dated 2014-04-10
dataview-1.4-8/dataview/R/dataview-package.R |only dataview-1.4-8/dataview/dataview-Ex.R |only dataview-1.4-8/dataview/man/dataview-package.Rd |only dataview-2.0-9/dataview/DESCRIPTION | 29 ++---- dataview-2.0-9/dataview/MD5 | 21 +--- dataview-2.0-9/dataview/R/helpers.R | 14 +- dataview-2.0-9/dataview/R/views.R | 115 +++++++++++++++--------- dataview-2.0-9/dataview/man/entry.view.Rd | 8 - dataview-2.0-9/dataview/man/heat.view.Rd | 14 +- dataview-2.0-9/dataview/man/tree.view.Rd | 13 +- dataview-2.0-9/dataview/man/whos.Rd | 21 ++-- dataview-2.0-9/dataview/man/whos.set.mask.Rd | 10 +- dataview-2.0-9/dataview/man/wrap.view.Rd | 12 +- 13 files changed, 142 insertions(+), 115 deletions(-)
Title: Functions for a variety of stylometric analyses
Description: A number of functions, supplemented by GUI, to perform various
analyses in the field of computational stylistics, authorship
attribution, etc.
Author: Maciej Eder, Jan Rybicki, Mike Kestemont
Maintainer: Maciej Eder
Diff between stylo versions 0.5.5 dated 2014-04-02 and 0.5.5-1 dated 2014-04-10
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/delete.markup.R | 4 ++-- R/stylo.pronouns.R | 2 ++ R/txt.to.words.ext.R | 2 +- 5 files changed, 13 insertions(+), 11 deletions(-)
Title: An R package for meta-analyzing region-based tests of rare DNA
variants
Description: Computes necessary information to meta analyze region-based tests for rare genetic variants (e.g. SKAT, T1) in individual studies, and performs meta analysis.
Author: Arend Voorman, Jennifer Brody, Han Chen, Thomas Lumley
Maintainer: Arend Voorman
Diff between seqMeta versions 1.3 dated 2013-12-03 and 1.4 dated 2014-04-10
DESCRIPTION | 6 +++--- MD5 | 15 ++++++++------- R/prepAdjust.R | 2 +- R/skatMeta.R | 17 +++++++---------- R/skatOMeta.R | 2 +- build |only data/SNPInfo.rda |binary data/seqMetaExample.rda |binary inst/doc/seqMeta.pdf |binary 9 files changed, 20 insertions(+), 22 deletions(-)
Title: Least-Squares Means
Description: This package provides methods for obtaining least-squares means for various linear models. It can also compute contrasts or linear combinations of these least-squares means, comparisons of slopes, interaction plots, and compact letter displays.
Author: Russell V. Lenth
Maintainer: Russ Lenth
Diff between lsmeans versions 2.00-4 dated 2014-03-24 and 2.00-5 dated 2014-04-10
DESCRIPTION | 8 - MD5 | 35 ++-- NAMESPACE | 21 +- R/cld.lsm.R | 323 ------------------------------------------- R/glht-support.R | 6 R/helpers.R | 10 - R/lsmeans.R | 33 +++- R/ref.grid.R | 64 +++++++- inst/NEWS | 18 ++ inst/doc/lsmeans-changes.pdf |binary inst/doc/using-lsmeans.pdf |binary man/cld.Rd | 6 man/contrast.Rd | 22 +- man/glht.Rd | 8 - man/lsmeans.Rd | 11 + man/ref.grid.class.Rd | 7 man/summary.Rd | 2 man/update.Rd |only tests/tests1.Rout.save | 13 + 19 files changed, 188 insertions(+), 399 deletions(-)
Title: Archetypal Analysis
Description: The main function archetypes implements a
framework for archetypal analysis supporting arbitrary
problem solving mechanisms for the different conceptual
parts of the algorithm.
Author: Manuel J. A. Eugster [aut, cre],
Friedrich Leisch [aut],
Sohan Seth [ctb]
Maintainer: Manuel J. A. Eugster
Diff between archetypes versions 2.1-2 dated 2013-12-16 and 2.2-0 dated 2014-04-10
DESCRIPTION | 23 - MD5 | 98 +++---- NAMESPACE | 61 ++-- NEWS | 7 R/archetypes-class.R | 504 +++++++++++++++++++-------------------- R/archetypes-kit-blocks.R | 4 R/archetypes-map.R | 4 R/archetypes-step.R | 459 +++++++++++++++++------------------ R/generics.R | 3 R/simplex-pot.R |only R/skeletonplot.R | 445 +++++++++++++++++----------------- build/vignette.rds |binary demo/robust-ozone.R | 146 +++++------ demo/robust-toy.R | 288 +++++++++++----------- inst/CITATION | 97 ++++--- inst/doc/archetypes.pdf |binary man/archetypes-generics.Rd | 20 - man/archetypes.Rd | 114 ++++---- man/archetypesFamily.Rd | 55 ++-- man/archmap.Rd | 26 +- man/archmap_projections.Rd | 12 man/as.archetypes.Rd | 22 - man/barplot.archetypes.Rd | 92 +++---- man/bestModel.Rd | 36 +- man/coef.Rd | 41 +-- man/extract.Rd | 40 +-- man/fitted.Rd | 36 +- man/kappa.Rd | 36 +- man/movieplot.Rd | 122 ++++----- man/nparameters.Rd | 48 +-- man/panorama.archetypes.Rd | 111 ++++---- man/parameters.Rd | 45 ++- man/pcplot.Rd | 54 ++-- man/pcplot.archetypes.Rd | 85 +++--- man/pcplot.default.Rd | 72 ++--- man/predict.Rd | 8 man/residuals.Rd | 36 +- man/robustArchetypes.Rd | 59 ++-- man/rss.Rd | 53 ++-- man/screeplot.stepArchetypes.Rd | 43 +-- man/simplexplot.Rd |only man/skeletonplot.Rd | 27 -- man/stepArchetypes.Rd | 15 - man/summary.Rd | 6 man/weightedArchetypes.Rd | 64 ++-- man/weights.Rd | 45 +-- man/xyplot.Rd | 36 +- man/xyplot.archetypes.Rd | 126 ++++----- man/xyplot.robustArchetypes.Rd | 38 +- man/xyplot.stepArchetypes.Rd | 70 ++--- man/xyplot.weightedArchetypes.Rd | 68 ++--- 51 files changed, 1963 insertions(+), 1937 deletions(-)