Title: Accelerated Failure Time Model with Generalized Estimating
Equations
Diff between aftgee versions 0.4-2 dated 2014-02-05 and 0.4-3 dated 2014-04-13
Description: This package features both rank-based estimates and least
square estimates to the Accelerated Failure Time (AFT) model.
For rank-based estimation, it provides approaches that include
the computationally efficient Gehan's weight and the general's
weight such as the logrank weight.
For the least square estimation, the estimating equation is
solved with Generalized Estimating Equations (GEE).
Moreover, in multivariate cases, the dependence working
correlation structure can be specified in GEE's setting.
Author: Sy Han (Steven) Chiou, Sangwook Kang, Jun Yan
Maintainer: Sy Han (Steven) Chiou
ChangeLog | 57 --------
DESCRIPTION | 9 -
MD5 | 20 +--
NAMESPACE | 2
R/aftgee.R | 55 +++++---
R/aftsrr.R | 198 +++++++++++++++++-------------
man/aftgee-package.Rd | 26 ++--
man/aftgee.Rd | 91 ++++++++------
man/aftgee.control.Rd | 11 -
man/aftsrr.Rd | 95 +++++++-------
src/aftgee.c | 323 +++++++++++++++++++++++++++++++++++++++++++++-----
11 files changed, 582 insertions(+), 305 deletions(-)
Title: Sensory data analysis with R
Diff between SensoMineR versions 1.18 dated 2013-07-09 and 1.20 dated 2014-04-13
Description: an R package for analysing sensory data
Author: Francois Husson, Sebastien Le, Marine Cadoret
Maintainer: Francois Husson
SensoMineR-1.18/SensoMineR/SensoMineR-Ex.R |only
SensoMineR-1.20/SensoMineR/DESCRIPTION | 11 -
SensoMineR-1.20/SensoMineR/MD5 | 141 ++++++++---------
SensoMineR-1.20/SensoMineR/NAMESPACE | 5
SensoMineR-1.20/SensoMineR/R/ConsensualWords.R | 9 -
SensoMineR-1.20/SensoMineR/R/IdMap.r | 25 +--
SensoMineR-1.20/SensoMineR/R/IdMapConsumer.r |only
SensoMineR-1.20/SensoMineR/R/WilliamsDesign.r | 6
SensoMineR-1.20/SensoMineR/R/carto.R | 2
SensoMineR-1.20/SensoMineR/R/construct.axes.R | 2
SensoMineR-1.20/SensoMineR/R/cpa.R | 2
SensoMineR-1.20/SensoMineR/R/fast.r | 4
SensoMineR-1.20/SensoMineR/R/hsortplot.R | 2
SensoMineR-1.20/SensoMineR/R/nappeplot.R | 41 ++--
SensoMineR-1.20/SensoMineR/R/optimaldesign.R | 2
SensoMineR-1.20/SensoMineR/R/panellipse.r | 4
SensoMineR-1.20/SensoMineR/R/panelmatch.R | 1
SensoMineR-1.20/SensoMineR/R/plotpanelist.R | 1
SensoMineR-1.20/SensoMineR/R/triangle.pair.test.R | 4
SensoMineR-1.20/SensoMineR/data/cream_id.rda |only
SensoMineR-1.20/SensoMineR/data/cream_signa.rda |only
SensoMineR-1.20/SensoMineR/data/hedochoc.rda |binary
SensoMineR-1.20/SensoMineR/data/sensopanels.rda |binary
SensoMineR-1.20/SensoMineR/man/ConsensualWords.rd | 2
SensoMineR-1.20/SensoMineR/man/ConsistencyIdeal.Rd | 4
SensoMineR-1.20/SensoMineR/man/IdMap.Rd | 23 +-
SensoMineR-1.20/SensoMineR/man/IdMapConsumer.Rd |only
SensoMineR-1.20/SensoMineR/man/WordCountAna.Rd | 2
SensoMineR-1.20/SensoMineR/man/ardi.Rd | 2
SensoMineR-1.20/SensoMineR/man/averagetable.Rd | 2
SensoMineR-1.20/SensoMineR/man/barrow.Rd | 2
SensoMineR-1.20/SensoMineR/man/boot.Rd | 2
SensoMineR-1.20/SensoMineR/man/boxprod.Rd | 4
SensoMineR-1.20/SensoMineR/man/calculate.average.Rd | 12 -
SensoMineR-1.20/SensoMineR/man/cards.rd | 2
SensoMineR-1.20/SensoMineR/man/chocolates.Rd | 2
SensoMineR-1.20/SensoMineR/man/coltable.Rd | 2
SensoMineR-1.20/SensoMineR/man/compo.cocktail.Rd | 2
SensoMineR-1.20/SensoMineR/man/construct.axes.Rd | 8
SensoMineR-1.20/SensoMineR/man/cpa.Rd | 6
SensoMineR-1.20/SensoMineR/man/cream_id.Rd |only
SensoMineR-1.20/SensoMineR/man/cream_signa.Rd |only
SensoMineR-1.20/SensoMineR/man/decat.Rd | 2
SensoMineR-1.20/SensoMineR/man/fcp.Rd | 2
SensoMineR-1.20/SensoMineR/man/graphinter.Rd | 2
SensoMineR-1.20/SensoMineR/man/hedo.cocktail.Rd | 2
SensoMineR-1.20/SensoMineR/man/hedochoc.Rd | 2
SensoMineR-1.20/SensoMineR/man/histprod.Rd | 2
SensoMineR-1.20/SensoMineR/man/indscal.Rd | 2
SensoMineR-1.20/SensoMineR/man/interact.Rd | 2
SensoMineR-1.20/SensoMineR/man/magicsort.Rd | 2
SensoMineR-1.20/SensoMineR/man/nappeplot.Rd | 4
SensoMineR-1.20/SensoMineR/man/napping.Rd | 2
SensoMineR-1.20/SensoMineR/man/napping.don.Rd | 2
SensoMineR-1.20/SensoMineR/man/napping.words.Rd | 2
SensoMineR-1.20/SensoMineR/man/paneliperf.Rd | 2
SensoMineR-1.20/SensoMineR/man/panellipse.Rd | 8
SensoMineR-1.20/SensoMineR/man/panellipse.session.Rd | 8
SensoMineR-1.20/SensoMineR/man/panelmatch.Rd | 6
SensoMineR-1.20/SensoMineR/man/panelperf.Rd | 2
SensoMineR-1.20/SensoMineR/man/plotellipse.Rd | 2
SensoMineR-1.20/SensoMineR/man/plotellipseinter.Rd | 2
SensoMineR-1.20/SensoMineR/man/plotellipseinterhmfa.Rd | 2
SensoMineR-1.20/SensoMineR/man/plotpanelist.Rd | 2
SensoMineR-1.20/SensoMineR/man/pmfa.Rd | 4
SensoMineR-1.20/SensoMineR/man/scalebypanelist.Rd | 2
SensoMineR-1.20/SensoMineR/man/search.desc.Rd | 2
SensoMineR-1.20/SensoMineR/man/senso.cocktail.Rd | 2
SensoMineR-1.20/SensoMineR/man/sensochoc.Rd | 2
SensoMineR-1.20/SensoMineR/man/sensopanels.Rd | 2
SensoMineR-1.20/SensoMineR/man/simulation.Rd | 4
SensoMineR-1.20/SensoMineR/man/smoothies.Rd | 2
SensoMineR-1.20/SensoMineR/man/triangle.design.Rd | 2
SensoMineR-1.20/SensoMineR/man/triangle.pair.test.Rd | 2
SensoMineR-1.20/SensoMineR/man/triangle.test.Rd | 2
75 files changed, 222 insertions(+), 205 deletions(-)
Title: Regression Modeling Strategies
Diff between rms versions 4.1-3 dated 2014-03-02 and 4.2-0 dated 2014-04-13
Description: Regression modeling, testing, estimation, validation,
graphics, prediction, and typesetting by storing enhanced model design
attributes in the fit. rms is a collection of functions that
assist with and streamline modeling. It also contains functions for
binary and ordinal logistic regression models, ordinal models for
continuous Y with a variety of distribution families, and the Buckley-James
multiple regression model for right-censored responses, and implements
penalized maximum likelihood estimation for logistic and ordinary
linear models. rms works with almost any regression model, but it
was especially written to work with binary or ordinal regression
models, Cox regression, accelerated failure time models,
ordinary linear models, the Buckley-James model, generalized least
squares for serially or spatially correlated observations, generalized
linear models, and quantile regression.
Author: Frank E Harrell Jr
Maintainer: Frank E Harrell Jr
rms-4.1-3/rms/R/survfit.formula.s |only
rms-4.1-3/rms/R/survplot.survfit.s |only
rms-4.1-3/rms/man/survfit.formula.Rd |only
rms-4.2-0/rms/DESCRIPTION | 8 ++---
rms-4.2-0/rms/INDEX | 3 +
rms-4.2-0/rms/MD5 | 42 +++++++++++++-------------
rms-4.2-0/rms/NAMESPACE | 5 +--
rms-4.2-0/rms/NEWS | 10 ++++++
rms-4.2-0/rms/R/cph.s | 7 ++--
rms-4.2-0/rms/R/hazard.ratio.plot.s | 3 -
rms-4.2-0/rms/R/npsurv.s |only
rms-4.2-0/rms/R/orm.fit.s | 8 +++--
rms-4.2-0/rms/R/psm.s | 4 +-
rms-4.2-0/rms/R/rmsMisc.s | 4 +-
rms-4.2-0/rms/R/survfit.cph.s | 4 +-
rms-4.2-0/rms/R/survplot.npsurv.s |only
rms-4.2-0/rms/README.md | 5 ++-
rms-4.2-0/rms/man/bj.Rd | 4 +-
rms-4.2-0/rms/man/npsurv.Rd |only
rms-4.2-0/rms/man/psm.Rd | 8 ++---
rms-4.2-0/rms/man/rms.trans.Rd | 12 +++----
rms-4.2-0/rms/man/survest.psm.Rd | 4 +-
rms-4.2-0/rms/man/survplot.Rd | 54 ++++++++++++++++++----------------
rms-4.2-0/rms/man/zzzrmsOverview.Rd | 4 +-
rms-4.2-0/rms/tests/orm3.r |only
rms-4.2-0/rms/tests/survfit.timedep.s |only
26 files changed, 105 insertions(+), 84 deletions(-)
Title: Rcpp bindings for the Boost Date_Time library
Diff between RcppBDT versions 0.2.2 dated 2014-02-22 and 0.2.3 dated 2014-04-13
Description: This package provides R with access to Boost Date_Time
functionality by using Rcpp modules.
Functionality from Boost Date_Time for dates, durations (both for days
and datetimes), timezones, and posix time ("ptime") is provided. The posix
time implementation can support high-resolution of up to nano-second
precision by using 96 bits (instead of R's 64) to present a ptime object.
Author: Dirk Eddelbuettel and Romain Francois
Maintainer: Dirk Eddelbuettel
RcppBDT-0.2.2/RcppBDT/man/bdt.Rd |only
RcppBDT-0.2.2/RcppBDT/src/RcppBDT.cpp |only
RcppBDT-0.2.3/RcppBDT/ChangeLog | 191 +++++++++++++++++++++++++
RcppBDT-0.2.3/RcppBDT/DESCRIPTION | 16 +-
RcppBDT-0.2.3/RcppBDT/MD5 | 44 ++++-
RcppBDT-0.2.3/RcppBDT/R/bdt.R | 18 +-
RcppBDT-0.2.3/RcppBDT/R/zzz.R | 88 ++++++++---
RcppBDT-0.2.3/RcppBDT/README.md | 29 +++
RcppBDT-0.2.3/RcppBDT/demo/00Index | 6
RcppBDT-0.2.3/RcppBDT/demo/RcppBDTdd.R |only
RcppBDT-0.2.3/RcppBDT/demo/RcppBDTdu.R |only
RcppBDT-0.2.3/RcppBDT/demo/RcppBDTpt.R |only
RcppBDT-0.2.3/RcppBDT/demo/RcppBDTtz.R |only
RcppBDT-0.2.3/RcppBDT/inst/NEWS.Rd | 26 ++-
RcppBDT-0.2.3/RcppBDT/inst/extdata |only
RcppBDT-0.2.3/RcppBDT/inst/include/RcppBDT.h | 47 +++++-
RcppBDT-0.2.3/RcppBDT/inst/include/RcppBDTdd.h |only
RcppBDT-0.2.3/RcppBDT/inst/include/RcppBDTdt.h |only
RcppBDT-0.2.3/RcppBDT/inst/include/RcppBDTdu.h |only
RcppBDT-0.2.3/RcppBDT/inst/include/RcppBDTpt.h |only
RcppBDT-0.2.3/RcppBDT/inst/include/RcppBDTtz.h |only
RcppBDT-0.2.3/RcppBDT/man/RcppBDT-package.Rd | 2
RcppBDT-0.2.3/RcppBDT/man/bdtDd.Rd |only
RcppBDT-0.2.3/RcppBDT/man/bdtDt.Rd |only
RcppBDT-0.2.3/RcppBDT/man/bdtDu.Rd |only
RcppBDT-0.2.3/RcppBDT/man/bdtPt.Rd |only
RcppBDT-0.2.3/RcppBDT/man/bdtTz.Rd |only
RcppBDT-0.2.3/RcppBDT/src/Makevars | 6
RcppBDT-0.2.3/RcppBDT/src/Makevars.win | 6
RcppBDT-0.2.3/RcppBDT/src/RcppBDTdd.cpp |only
RcppBDT-0.2.3/RcppBDT/src/RcppBDTdt.cpp |only
RcppBDT-0.2.3/RcppBDT/src/RcppBDTdu.cpp |only
RcppBDT-0.2.3/RcppBDT/src/RcppBDTpt.cpp |only
RcppBDT-0.2.3/RcppBDT/src/RcppBDTtz.cpp |only
34 files changed, 410 insertions(+), 69 deletions(-)
Title: Harrell Miscellaneous
Diff between Hmisc versions 3.14-3 dated 2014-03-02 and 3.14-4 dated 2014-04-13
Description: The Hmisc package contains many functions useful for data
analysis, high-level graphics, utility operations, functions for
computing sample size and power, importing datasets,
imputing missing values, advanced table making, variable clustering,
character string manipulation, conversion of R objects to LaTeX code,
and recoding variables.
Author: Frank E Harrell Jr
Maintainer: Frank E Harrell Jr
DESCRIPTION | 8 +-
MD5 | 39 +++++-----
NEWS | 16 +++-
R/Misc.s | 17 +++-
R/ecdf.s | 146 +++++++++++++++++++++++---------------
R/latex.s | 90 ++++++++++++-----------
R/nobsY.s | 22 +++--
R/rcspline.eval.s | 121 +++++++++++++++++--------------
R/summary.formula.s | 2
R/summaryM.s | 2
R/transcan.s | 2
man/Ecdf.Rd | 19 +---
man/Misc.Rd | 26 +++---
man/addMarginal.Rd | 8 +-
man/nobsY.Rd | 3
man/rcspline.eval.Rd | 4 -
man/summaryM.Rd | 1
src/mChoice.c | 12 +--
tests/fit.mult.impute.bootstrap.r |only
tests/latex.s | 15 +++
tests/summary.formula.r | 14 +++
21 files changed, 336 insertions(+), 231 deletions(-)
Title: Interface between R and the Google Chart Tools
Diff between googleVis versions 0.4.7 dated 2013-11-10 and 0.5.1 dated 2014-04-13
Description: The googleVis package provides an interface between R and the
Google Chart Tools API. It allows users to create web pages with
interactive charts based on R data frames, using the Google Chart Tools and
to display them either via the local R HTTP help server or within their own
sites, without uploading the data to Google. A modern browser with Internet
connection is required and for some charts Flash. Please visit the project
web site for more information and examples.
Author: Markus Gesmann [aut, cre],
Diego de Castillo [aut],
Joe Cheng [ctb]
Maintainer: Markus Gesmann
DESCRIPTION | 44 -
MD5 | 147 ++--
NAMESPACE | 50 +
NEWS | 38 +
R/gvis.R | 54 +
R/gvisAnnotatedTimeLine.R | 199 ++++++
R/gvisAnnotationChart.R |only
R/gvisBubbleChart.R | 106 +++
R/gvisCalendar.R |only
R/gvisCoreCharts.R | 798 ++++++++++++++++++++++++--
R/gvisGeoChart.R | 195 ++++++
R/gvisGeoMap.R | 141 ++++
R/gvisHistogram.R |only
R/gvisIntensityMap.R | 75 ++
R/gvisMap.R | 109 +++
R/gvisMethods.R | 19
R/gvisMotionChart.R | 198 +++++-
R/gvisOrgChart.R | 84 ++
R/gvisPieGaugeChart.R | 136 ++++
R/gvisSankey.R |only
R/gvisTable.R | 85 ++
R/gvisTimeLine.R | 137 +++-
R/gvisTreeMap.R | 192 ++++++
R/shiny.R | 83 ++
R/zzz.R | 11
README.md |only
THANKS | 1
build/googleVis.pdf |only
build/vignette.rds |binary
data/Cairo.RData |only
data/dino.RData |only
demo/00Index | 2
demo/Roles.R |only
demo/Trendlines.R |only
demo/googleVis.R | 431 ++++++++++----
inst/doc/Using_Roles_via_googleVis.R |only
inst/doc/Using_Roles_via_googleVis.Rmd |only
inst/doc/Using_Roles_via_googleVis.html |only
inst/doc/Using_Trendlines_with_googleVis.R |only
inst/doc/Using_Trendlines_with_googleVis.Rmd |only
inst/doc/Using_Trendlines_with_googleVis.html |only
inst/doc/Using_googleVis_with_knitr.R |only
inst/doc/Using_googleVis_with_knitr.Rmd |only
inst/doc/Using_googleVis_with_knitr.html |only
inst/doc/googleVis.R | 98 +--
inst/doc/googleVis.Rnw | 88 ++
inst/doc/googleVis.pdf |binary
inst/doc/googleVis_examples.R |only
inst/doc/googleVis_examples.Rmd |only
inst/doc/googleVis_examples.html |only
inst/mansections |only
man/Cairo.Rd |only
man/CityPopularity.Rd | 9
man/Exports.Rd | 7
man/dino.Rd |only
man/googleVis-package.Rd | 43 -
man/gvisAnnotatedTimeLine.Rd | 536 +++--------------
man/gvisAnnotationChart.Rd |only
man/gvisAreaChart.Rd | 755 +-----------------------
man/gvisBarChart.Rd | 588 +------------------
man/gvisBubbleChart.Rd | 796 ++-----------------------
man/gvisCalendar.Rd |only
man/gvisCandlestickChart.Rd | 690 ++--------------------
man/gvisColumnChart.Rd | 598 +------------------
man/gvisComboChart.Rd | 737 +-----------------------
man/gvisGauge.Rd | 203 +-----
man/gvisGeoChart.Rd | 494 +++-------------
man/gvisGeoMap.Rd | 368 +++--------
man/gvisHistogram.Rd |only
man/gvisIntensityMap.Rd | 193 +-----
man/gvisLineChart.Rd | 743 +-----------------------
man/gvisMap.Rd | 253 ++------
man/gvisMerge.Rd | 33 -
man/gvisMethods.Rd | 20
man/gvisMotionChart.Rd | 367 +++--------
man/gvisOrgChart.Rd | 200 ++----
man/gvisPieChart.Rd | 398 +-----------
man/gvisSankey.Rd |only
man/gvisScatterChart.Rd | 640 ++------------------
man/gvisSteppedAreaChart.Rd | 623 +-------------------
man/gvisTable.Rd | 321 ++--------
man/gvisTimeline.Rd |only
man/gvisTreeMap.Rd | 346 +++--------
man/renderGvis.Rd | 72 +-
vignettes/Using_Roles_via_googleVis.Rmd |only
vignettes/Using_Trendlines_with_googleVis.Rmd |only
vignettes/Using_googleVis_with_knitr.Rmd |only
vignettes/googleVis.Rnw | 88 ++
vignettes/googleVis.bib | 4
vignettes/googleVis_examples.Rmd |only
90 files changed, 4738 insertions(+), 8908 deletions(-)
Title: Statistical Modeling
Diff between statmod versions 1.4.18 dated 2013-09-27 and 1.4.19 dated 2014-04-13
Description: Various statistical modeling functions including growth curve comparisons, limiting dilution analysis, mixed linear models, heteroscedastic regression, Tweedie family generalized linear models, the inverse-Gaussian distribution and Gauss quadrature.
Author: Gordon Smyth [cre, aut], Yifang Hu [ctb], Peter Dunn [ctb], Belinda Phipson [ctb], Yunshun Chen [ctb]
Maintainer: Gordon Smyth
DESCRIPTION | 8 +++---
MD5 | 12 ++++-----
R/glmnb.R | 44 ++++++++++++++++++---------------
R/invgauss.R | 65 ++++++++++++++++++++++++++-----------------------
inst/doc/changelog.txt | 7 +++++
man/glmgam.Rd | 3 +-
man/invgauss.Rd | 7 +++--
7 files changed, 83 insertions(+), 63 deletions(-)
Title: Bayesian analysis of qRT-PCR data
Diff between MCMC.qpcr versions 1.0.3 dated 2014-02-19 and 1.1.3 dated 2014-04-13
Description: This package implements generalized linear mixed model analysis of qRT-PCR data based on lognormal-Poisson model fitted using MCMC. Control genes are not required but can be incorporated as Bayesian priors or, when template abundances correlate with conditions, as trackers of global effects (common to all genes). Also implemented are the lognormal model for higher-abundance data and a "classic" model involving multi-gene normalization on a by-sample basis. Several plotting functions are included to extract and visualize results. Tutorial: http://www.bio.utexas.edu/research/matz_lab/matzlab/Methods_files/mcmc.qpcr.tutorial.pdf
Author: Mikhail V. Matz
Maintainer: Mikhail V. Matz
MCMC.qpcr-1.0.3/MCMC.qpcr/R/varHPDplot.R |only
MCMC.qpcr-1.0.3/MCMC.qpcr/R/varHPDpoints.R |only
MCMC.qpcr-1.0.3/MCMC.qpcr/man/varHPDplot.Rd |only
MCMC.qpcr-1.0.3/MCMC.qpcr/man/varHPDpoints.Rd |only
MCMC.qpcr-1.1.3/MCMC.qpcr/DESCRIPTION | 10 -
MCMC.qpcr-1.1.3/MCMC.qpcr/MD5 | 38 +++---
MCMC.qpcr-1.1.3/MCMC.qpcr/R/HPDplot.R | 1
MCMC.qpcr-1.1.3/MCMC.qpcr/R/HPDsummary.R | 114 +++++++++++++++----
MCMC.qpcr-1.1.3/MCMC.qpcr/R/mcmc.qpcr.R | 106 ++++++++++-------
MCMC.qpcr-1.1.3/MCMC.qpcr/R/mcmc.qpcr.classic.R | 19 ++-
MCMC.qpcr-1.1.3/MCMC.qpcr/R/mcmc.qpcr.lognormal.R | 102 ++++++++++++-----
MCMC.qpcr-1.1.3/MCMC.qpcr/R/softNorm.R |only
MCMC.qpcr-1.1.3/MCMC.qpcr/R/summaryPlot.R | 18 +--
MCMC.qpcr-1.1.3/MCMC.qpcr/man/HPDplot.Rd | 2
MCMC.qpcr-1.1.3/MCMC.qpcr/man/HPDplotBygene.Rd | 2
MCMC.qpcr-1.1.3/MCMC.qpcr/man/HPDsummary.Rd | 15 +-
MCMC.qpcr-1.1.3/MCMC.qpcr/man/MCMC.qpcr-package.Rd | 6 -
MCMC.qpcr-1.1.3/MCMC.qpcr/man/mcmc.converge.check.Rd | 4
MCMC.qpcr-1.1.3/MCMC.qpcr/man/mcmc.qpcr.Rd | 67 +++++------
MCMC.qpcr-1.1.3/MCMC.qpcr/man/mcmc.qpcr.classic.Rd | 12 +-
MCMC.qpcr-1.1.3/MCMC.qpcr/man/mcmc.qpcr.lognormal.Rd | 23 ++-
MCMC.qpcr-1.1.3/MCMC.qpcr/man/softNorm.Rd |only
MCMC.qpcr-1.1.3/MCMC.qpcr/man/summaryPlot.Rd | 8 -
23 files changed, 362 insertions(+), 185 deletions(-)
Title: Regression estimation based on the compound covariate method
under the Cox proportional hazard model
Diff between compound.Cox versions 1.3 dated 2013-11-08 and 1.4 dated 2014-04-13
Description: Calculate regression coefficients and their standard deviations under the Cox proportional hazard model with the large number of covariates. A shrinkage type estimation based on the compound covariate method (Emura, Chen & Chen, 2012 PLoS ONE) and a univariate gene selection method under dependent censoring (Emura & Chen, 2014 Statistical Methods in Medical Research) are implemented in this package.
Author: Takeshi Emura & Yi-Hau Chen
Maintainer: Takeshi Emura
DESCRIPTION | 14 +++++++-------
MD5 | 12 ++++++++----
NAMESPACE | 2 ++
R/cindex.CV.R |only
R/dependCox.reg.CV.R |only
man/cindex.CV.Rd |only
man/compound.Cox-package.Rd | 14 +++++++++-----
man/compound.reg.Rd | 2 +-
man/dependCox.reg.CV.Rd |only
9 files changed, 27 insertions(+), 17 deletions(-)
Title: Linear mixed-effects models using Eigen and S4
Diff between lme4 versions 1.1-5 dated 2014-03-14 and 1.1-6 dated 2014-04-13
Description: Fit linear and generalized linear mixed-effects models.
The models and their components are represented using S4 classes and
methods. The core computational algorithms are implemented using the
Eigen C++ library for numerical linear algebra and RcppEigen "glue".
Author: Douglas Bates [aut], Martin Maechler [aut],
Ben Bolker [aut, cre], Steven Walker [aut],
Rune Haubo Bojesen Christensen [ctb],
Henrik Singmann [ctb]
Maintainer: Ben Bolker
lme4-1.1-5/lme4/vignettes/PLSvGLS.pdf |only
lme4-1.1-5/lme4/vignettes/Theory.pdf |only
lme4-1.1-6/lme4/DESCRIPTION | 12 ++++++------
lme4-1.1-6/lme4/MD5 | 20 +++++++++++---------
lme4-1.1-6/lme4/build |only
lme4-1.1-6/lme4/inst/NEWS.Rd | 12 ++++++++++++
lme4-1.1-6/lme4/inst/NEWS.Rd~ |only
lme4-1.1-6/lme4/inst/doc/PLSvGLS.Rnw |only
lme4-1.1-6/lme4/inst/doc/Theory.Rnw |only
lme4-1.1-6/lme4/inst/tests/test-glmer.R | 2 +-
lme4-1.1-6/lme4/man/drop1.merMod.Rd | 2 +-
lme4-1.1-6/lme4/tests/priorWeights.R | 24 +++++++++++++-----------
lme4-1.1-6/lme4/tests/profile-tst.R | 12 +++++++-----
lme4-1.1-6/lme4/tests/simulate.R | 20 ++++++++++++--------
14 files changed, 63 insertions(+), 41 deletions(-)