Title: Biplot representations of ordinal variables
Description: Analysis of a matrix of polytomous items using Ordinal Logistic Biplots (OLB)
The OLB procedure extends the binary logistic biplot to ordinal (polytomous) data.
The individuals are represented as points on a plane and the variables are represented
as lines rather than vectors as in a classical or binary biplot, specifying the points
for each of the categories of the variable.
The set of prediction regions is established by stripes perpendicular to the line
between the category points, in such a way that the prediction for each individual is given
by its projection into the line of the variable.
Author: Julio Cesar Hernandez Sanchez, Jose Luis Vicente-Villardon
Maintainer: Julio Cesar Hernandez Sanchez
Diff between OrdinalLogisticBiplot versions 0.2 dated 2013-11-26 and 0.3 dated 2014-05-02
OrdinalLogisticBiplot-0.2/OrdinalLogisticBiplot/R/EstimationRowsMIRT.r |only OrdinalLogisticBiplot-0.2/OrdinalLogisticBiplot/R/GetOrdinalBiplotObjectMIRT.r |only OrdinalLogisticBiplot-0.2/OrdinalLogisticBiplot/R/GetOrdinalBiplotObjectPenal.r |only OrdinalLogisticBiplot-0.2/OrdinalLogisticBiplot/R/PlotClusterVariable.r |only OrdinalLogisticBiplot-0.2/OrdinalLogisticBiplot/R/plotOrdBipCoeffVariable.r |only OrdinalLogisticBiplot-0.2/OrdinalLogisticBiplot/man/EstimationRowsMIRT.Rd |only OrdinalLogisticBiplot-0.2/OrdinalLogisticBiplot/man/GetOrdinalBiplotObjectMIRT.Rd |only OrdinalLogisticBiplot-0.2/OrdinalLogisticBiplot/man/GetOrdinalBiplotObjectPenal.Rd |only OrdinalLogisticBiplot-0.2/OrdinalLogisticBiplot/man/PlotClusterVariable.Rd |only OrdinalLogisticBiplot-0.2/OrdinalLogisticBiplot/man/plotOrdBipCoeffVariable.Rd |only OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/DESCRIPTION | 8 OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/MD5 | 56 - OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/NAMESPACE | 7 OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/R/BiplotDensity.r | 3 OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/R/CheckDataSet.r | 61 +- OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/R/OrdinalLogBiplotEM.r | 66 +- OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/R/OrdinalLogisticBiplot.r | 237 ++++--- OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/R/PlotClusters.r |only OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/R/auxLibrary_OLB.r | 303 ++++++---- OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/R/plotOrdinalFittedVariable.r |only OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/R/pordlogist.r | 7 OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/data/LevelSatPhd.rda |binary OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/inst/CITATION | 32 - OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/man/BiplotDensity.Rd | 32 - OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/man/CheckDataSet.Rd | 7 OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/man/LevelSatPhd.Rd | 10 OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/man/OrdinalLogBiplotEM.Rd | 17 OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/man/OrdinalLogisticBiplot-package.Rd | 5 OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/man/OrdinalLogisticBiplot.Rd | 16 OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/man/PlotClusters.Rd |only OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/man/plot.ordinal.logistic.biplot.Rd | 11 OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/man/plotOrdinalFittedVariable.Rd |only OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/man/plotOrdinalVariable.Rd | 20 OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/man/pordlogist.Rd | 4 OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/man/summary.ordinal.logistic.biplot.Rd | 16 OrdinalLogisticBiplot-0.3/OrdinalLogisticBiplot/man/summary.pordlogist.Rd | 3 36 files changed, 547 insertions(+), 374 deletions(-)
More information about OrdinalLogisticBiplot at CRAN
Permanent link
Title: Algorithms for Quantitative Pedology
Description: A collection of algorithms related to modeling of soil resources, soil classification, soil profile aggregation, and visualization.
Author: Dylan Beaudette
Maintainer: Dylan Beaudette
Diff between aqp versions 1.6 dated 2013-12-17 and 1.7 dated 2014-05-02
aqp-1.6/aqp/vignettes |only aqp-1.7/aqp/DESCRIPTION | 11 - aqp-1.7/aqp/MD5 | 64 +++++---- aqp-1.7/aqp/NEWS | 23 +++ aqp-1.7/aqp/R/SoilProfileCollection-coercion.R | 2 aqp-1.7/aqp/R/SoilProfileCollection-slice-methods.R | 1 aqp-1.7/aqp/R/addVolumeFraction.R |only aqp-1.7/aqp/R/estimateSoilDepth.R |only aqp-1.7/aqp/R/get.ml.hz.R | 2 aqp-1.7/aqp/R/getSoilDepthClass.R |only aqp-1.7/aqp/R/profile_compare.R | 3 aqp-1.7/aqp/R/profile_plot.R | 132 ++++++++++++++++---- aqp-1.7/aqp/R/setters.R | 10 - aqp-1.7/aqp/R/slab.R | 22 ++- aqp-1.7/aqp/R/test_hz_logic.R | 1 aqp-1.7/aqp/TODO | 2 aqp-1.7/aqp/data/amarillo.rda |binary aqp-1.7/aqp/data/ca630.rda |binary aqp-1.7/aqp/data/munsell.rda |binary aqp-1.7/aqp/data/rruff.sample.rda |binary aqp-1.7/aqp/data/sp1.rda |binary aqp-1.7/aqp/data/sp2.rda |binary aqp-1.7/aqp/data/sp3.rda |binary aqp-1.7/aqp/data/sp4.rda |binary aqp-1.7/aqp/data/sp5.rda |binary aqp-1.7/aqp/inst/CITATION | 2 aqp-1.7/aqp/man/SPC-plotting.Rd | 56 ++++---- aqp-1.7/aqp/man/addBracket.Rd | 22 +-- aqp-1.7/aqp/man/addVolumeFraction.Rd |only aqp-1.7/aqp/man/estimateSoilDepth.Rd |only aqp-1.7/aqp/man/getSoilDepthClass.Rd |only aqp-1.7/aqp/man/profileApply-methods.Rd | 5 aqp-1.7/aqp/man/sp2.Rd | 3 aqp-1.7/aqp/man/sp4.Rd | 16 -- aqp-1.7/aqp/man/sp5.Rd | 10 - 35 files changed, 247 insertions(+), 140 deletions(-)
Title: Nonparametric Methods for Cognitive Diagnosis
Description: This package performs an array of nonparametric and parametric estimation methods for cognitive diagnostic models, including nonparametric classification of examinee attribute profiles, joint maximum likelihood estimation (JMLE) of examinee attribute profiles and item parameters, and nonparametric refinement of the Q-matrix, as well as conditional maximum likelihood estimation (CMLE) of examinee attribute profiles given item parameters and CMLE of item parameters given examinee attribute profiles. Currently the nonparametric methods in the package support both conjunctive and disjunctive models, and the parametric methods in the package support the DINA model, the DINO model, the NIDA model, the G-NIDA model, and the R-RUM model.
Author: Yi Zheng [aut, cre],
Chia-Yi Chiu [aut],
Jeffrey A. Douglas [ctb]
Maintainer: Yi Zheng
Diff between NPCD versions 1.0-5 dated 2014-02-13 and 1.0-6 dated 2014-05-02
DESCRIPTION | 12 +-- MD5 | 6 - R/Qrefine.R | 237 ++++++++++++++++++++++++++++++------------------------------ man/NPCD.Rd | 4 - 4 files changed, 131 insertions(+), 128 deletions(-)
Title: Benchmark Experiments Toolbox
Description: The benchmark package provides a toolbox for setup, execution
and analysis of benchmark experiments. Main focus is the analysis of
data accumulating during the execution -- one primary objective is the
statistical correct computation of the candidate algorithms' order.
Author: Manuel J. A. Eugster [aut, cre]
Maintainer: Manuel J. A. Eugster
Diff between benchmark versions 0.3-5 dated 2012-12-03 and 0.3-6 dated 2014-05-02
DESCRIPTION | 26 ++++---- MD5 | 54 +++++++++--------- NAMESPACE | 105 ++++++++++++++++++------------------ NEWS | 6 ++ R/algperf-visualizations.R | 2 R/datachar-visualizations.R | 1 R/testprocedure.R | 4 + R/warehouse.R | 2 inst/CITATION | 17 +++-- man/StatlogCharacteristics.Rd | 29 +++++---- man/TestProcedure.Rd | 30 ++++++---- man/algperf-paircomp.Rd | 40 ++++++------- man/algperf-visualization.Rd | 42 ++++++-------- man/as.dataset.Rd | 16 ++--- man/as.psychobench.Rd | 6 +- man/as.relation.PaircompDecision.Rd | 11 +-- man/as.warehouse.Rd | 22 +++---- man/benchmark-comptime.Rd | 14 ++-- man/benchmark-sampling.Rd | 14 ++-- man/benchmark.Rd | 21 +++---- man/beplot0.Rd | 68 ++++++++++------------- man/bsgraph0.Rd | 39 ++++++------- man/bsplot0.Rd | 39 ++++++------- man/characterize.Rd | 21 +++---- man/datachar-visualization.Rd | 17 ++--- man/subset.AlgorithmPerformance.Rd | 8 +- man/testres-visualization.Rd | 6 +- man/warehouse.Rd | 62 ++++++++++----------- 28 files changed, 367 insertions(+), 355 deletions(-)
Title: Balanced and spatially balanced sampling
Description: This package includes methods that can select balanced and spatially balanced probability samples in multi-dimensional spaces with any prescribed inclusion probabilities. It contains fast (C++ via Rcpp) implementations of the included sampling methods. The local pivotal method and spatially correlated Poisson sampling (for spatially balanced sampling) are included. Also the cube method (for balanced sampling) and the local cube method (for doubly balanced sampling) are included.
Author: Anton Grafström
Maintainer: Anton Grafström
Diff between BalancedSampling versions 1.0 dated 2014-03-24 and 1.4 dated 2014-05-02
BalancedSampling-1.0/BalancedSampling/R/inclusionprobabilities.R |only BalancedSampling-1.0/BalancedSampling/man/inclusionprobabilities.Rd |only BalancedSampling-1.0/BalancedSampling/src/lcube.cpp |only BalancedSampling-1.4/BalancedSampling/DESCRIPTION | 8 BalancedSampling-1.4/BalancedSampling/MD5 | 29 BalancedSampling-1.4/BalancedSampling/R/RcppExports.R | 24 BalancedSampling-1.4/BalancedSampling/R/probabilities.R |only BalancedSampling-1.4/BalancedSampling/man/BalancedSampling-package.Rd | 14 BalancedSampling-1.4/BalancedSampling/man/cube.Rd | 2 BalancedSampling-1.4/BalancedSampling/man/cubestratified.Rd |only BalancedSampling-1.4/BalancedSampling/man/flightphase.Rd |only BalancedSampling-1.4/BalancedSampling/man/landingphase.Rd |only BalancedSampling-1.4/BalancedSampling/man/lcube.Rd | 2 BalancedSampling-1.4/BalancedSampling/man/lcubeflightphase.Rd |only BalancedSampling-1.4/BalancedSampling/man/lcubelandingphase.Rd |only BalancedSampling-1.4/BalancedSampling/man/lcubestratified.Rd |only BalancedSampling-1.4/BalancedSampling/man/lpm.Rd | 2 BalancedSampling-1.4/BalancedSampling/man/probabilities.Rd |only BalancedSampling-1.4/BalancedSampling/man/spm.Rd | 4 BalancedSampling-1.4/BalancedSampling/src/RcppExports.cpp | 103 + BalancedSampling-1.4/BalancedSampling/src/cube.cpp | 866 +++++++++- 21 files changed, 985 insertions(+), 69 deletions(-)
More information about BalancedSampling at CRAN
Permanent link
Title: Inference, aggregation and visualization for top-k ranked lists
Description: For multiple ranked input lists (full or partial) representing the same set of N objects, the package TopKLists offers (1) statistical inference on the lengths of informative top-k lists, (2) stochastic aggregation of full or partial lists, and (3) graphical tools for the statistical exploration of input lists, and for the visualization of aggregation results.
Author: Michael G. Schimek, Medical University of Graz, Graz, Austria; Eva Budinska, Masaryk University, Brno, Czech Republic; Jie Ding, Harvard University, Cambridge, Massachusetts, USA; Karl G. Kugler, Helmholtz Centre Munich, Neuherberg, Germany; Vendula Svendova, Medical University of Graz, Graz, Austria; Shili Lin, The Ohio State University, Columbus, Ohio, USA.
Maintainer: Michael G. Schimek
Diff between TopKLists versions 1.0.0 dated 2014-04-28 and 1.0.1 dated 2014-05-02
DESCRIPTION | 13 ++++++++----- MD5 | 18 +++++++++--------- build/vignette.rds |binary data/TopKGUISampleInput.rda |binary data/TopKSpaceSampleInput.rda |binary data/breast.rda |binary inst/doc/TopKLists.Rnw | 6 +++--- inst/doc/TopKLists.pdf |binary man/TopKListsGUI.Rd | 2 +- vignettes/TopKLists.Rnw | 6 +++--- 10 files changed, 24 insertions(+), 21 deletions(-)
Title: Descriptive analysis by groups
Description: A package designed to read, interpret, summarise, display and
analyse epidemiological data. Can be used to create data summaries for
quality control, extensive reports for exploring data, including
publication-ready univariate or bivariate tables in plain text HTML and
LaTeX, and a figures to quickly visualise the distribution of your data.
Depending on the nature of the variable, various statistics are
calculated (mean, median, frequencies, incidences) and appropriate
tests are performed (t-test, Analysis of variance, Kruskal-Wallis, Fisher,
log-rank, ...). The latest version includes functionality for summarising
genetic data, and for performing low-level quality control of your database
(see radiograph()) to help identify data-entry errors. This version has
also been implemented in a web-interface to make this package accessible
to non-R-users (see www.comparegroups.eu).
Author: Isaac Subirana, Joan Vila, H�ctor Sanz, Gavin Lucas, Judith Pe�afiel
and David Gim�nez
Maintainer: Isaac Subirana
Diff between compareGroups versions 2.0.3 dated 2014-04-29 and 2.0.4 dated 2014-05-02
DESCRIPTION | 8 ++++---- MD5 | 23 ++++++++++++----------- inst/CITATION |only inst/doc/changelog.txt | 4 ++++ man/compareGroups-package.Rd | 8 ++++++-- man/compareGroups.Rd | 4 ++++ man/createTable.Rd | 5 +++-- vignettes/figures/bivar/age.pdf |binary vignettes/figures/bivar/sex.pdf |binary vignettes/figures/bivar/tmain.pdf |binary vignettes/figures/univar/age.pdf |binary vignettes/figures/univar/sex.pdf |binary vignettes/figures/univar/tmain.pdf |binary 13 files changed, 33 insertions(+), 19 deletions(-)
Title: In-source documentation for R
Description: A Doxygen-like in-source documentation system
for Rd, collation, and NAMESPACE.
Author: Hadley Wickham [aut, cre],
Peter Danenberg [aut],
Manuel Eugster [aut]
Maintainer: Hadley Wickham
Diff between roxygen2 versions 3.1.0 dated 2014-01-29 and 4.0.0 dated 2014-05-02
roxygen2-3.1.0/roxygen2/inst/src |only roxygen2-3.1.0/roxygen2/inst/tests |only roxygen2-3.1.0/roxygen2/man/parsers.Rd |only roxygen2-3.1.0/roxygen2/man/register-parsers.Rd |only roxygen2-3.1.0/roxygen2/src/Makevars |only roxygen2-3.1.0/roxygen2/src/Makevars.win.R |only roxygen2-3.1.0/roxygen2/tests/test-all.R |only roxygen2-4.0.0/roxygen2/DESCRIPTION | 30 +- roxygen2-4.0.0/roxygen2/MD5 | 216 +++++++++-------- roxygen2-4.0.0/roxygen2/NAMESPACE | 39 +-- roxygen2-4.0.0/roxygen2/R/RcppExports.R | 9 roxygen2-4.0.0/roxygen2/R/alias.R | 14 - roxygen2-4.0.0/roxygen2/R/description.R | 6 roxygen2-4.0.0/roxygen2/R/inherit-params.R | 44 +-- roxygen2-4.0.0/roxygen2/R/minidesc.R |only roxygen2-4.0.0/roxygen2/R/object-defaults.R | 16 - roxygen2-4.0.0/roxygen2/R/object-from-call.R | 122 +++++---- roxygen2-4.0.0/roxygen2/R/object.R | 132 ++++++++-- roxygen2-4.0.0/roxygen2/R/parse-preref.R | 137 +++++----- roxygen2-4.0.0/roxygen2/R/parse-registry.R | 14 - roxygen2-4.0.0/roxygen2/R/parse.R | 42 +-- roxygen2-4.0.0/roxygen2/R/rc.R | 59 ++-- roxygen2-4.0.0/roxygen2/R/rd-file-api.R | 14 - roxygen2-4.0.0/roxygen2/R/rd-tag-api.R | 83 ++++-- roxygen2-4.0.0/roxygen2/R/roclet-collate.R | 10 roxygen2-4.0.0/roxygen2/R/roclet-namespace.R | 148 ++++------- roxygen2-4.0.0/roxygen2/R/roclet-rd.R | 303 +++++++----------------- roxygen2-4.0.0/roxygen2/R/roclet.R | 18 - roxygen2-4.0.0/roxygen2/R/roxygen.R | 9 roxygen2-4.0.0/roxygen2/R/roxygenize.R | 52 ++-- roxygen2-4.0.0/roxygen2/R/s3.R | 43 +-- roxygen2-4.0.0/roxygen2/R/safety.R |only roxygen2-4.0.0/roxygen2/R/source.R | 46 ++- roxygen2-4.0.0/roxygen2/R/template.R | 7 roxygen2-4.0.0/roxygen2/R/topic-name.R | 18 - roxygen2-4.0.0/roxygen2/R/usage.R | 42 ++- roxygen2-4.0.0/roxygen2/R/utils.R | 48 ++- roxygen2-4.0.0/roxygen2/README.md | 10 roxygen2-4.0.0/roxygen2/build |only roxygen2-4.0.0/roxygen2/inst/doc |only roxygen2-4.0.0/roxygen2/man/is_s3_generic.Rd | 9 roxygen2-4.0.0/roxygen2/man/namespace_roclet.Rd | 86 ------ roxygen2-4.0.0/roxygen2/man/new_roclet.Rd | 1 roxygen2-4.0.0/roxygen2/man/object.Rd | 21 - roxygen2-4.0.0/roxygen2/man/rd_roclet.Rd | 189 -------------- roxygen2-4.0.0/roxygen2/man/register-parser.Rd | 10 roxygen2-4.0.0/roxygen2/man/roc_proc_text.Rd | 13 - roxygen2-4.0.0/roxygen2/man/roxygen.Rd | 7 roxygen2-4.0.0/roxygen2/man/roxygenize.Rd | 42 +-- roxygen2-4.0.0/roxygen2/man/source_package.Rd | 5 roxygen2-4.0.0/roxygen2/man/update_collate.Rd | 3 roxygen2-4.0.0/roxygen2/man/upgradeRoxygen.Rd |only roxygen2-4.0.0/roxygen2/src/RcppExports.cpp | 30 ++ roxygen2-4.0.0/roxygen2/src/isComplete.cpp |only roxygen2-4.0.0/roxygen2/src/leadingSpaces.cpp |only roxygen2-4.0.0/roxygen2/src/wrapString.cpp | 23 - roxygen2-4.0.0/roxygen2/tests/testthat |only roxygen2-4.0.0/roxygen2/tests/testthat.R |only roxygen2-4.0.0/roxygen2/vignettes |only 59 files changed, 1023 insertions(+), 1147 deletions(-)
Title: Rcpp bindings for Sequential Monte Carlo
Description: This package provides R with access to the Sequential
Monte Carlo Template Classes by Johansen (Journal of Statistical
Software, 2009, v30, i6).
At present, two additional examples have been added, and the first
example from the JSS paper has been extended. Further integration
and extensions are planned.
Author: Dirk Eddelbuettel and Adam M. Johansen
Maintainer: Dirk Eddelbuettel
Diff between RcppSMC versions 0.1.3 dated 2014-05-02 and 0.1.4 dated 2014-05-02
ChangeLog | 6 ++++++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/NEWS.Rd | 6 ++++++ inst/include/sampler.h | 8 +++++--- 5 files changed, 25 insertions(+), 11 deletions(-)
Title: Test Analysis Modules
Description:
The package includes marginal and joint maximum likelihood
estimation of uni- and multidimensional item response models
(Rasch, 2PL, Generalized Partial Credit, Rating Scale, Multi Facets),
fit statistics, standard error estimation, as
well as plausible value imputation and weighted likelihood
estimation of ability.
Author: Thomas Kiefer [aut, cre], Alexander Robitzsch [aut], Margaret Wu [aut]
Maintainer: Thomas Kiefer
Diff between TAM versions 1.0-2 dated 2014-04-02 and 1.0-2.1 dated 2014-05-02
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/tamwle_helper_ccode.cpp | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Performs various spatial epidemiological analyses
Description: Cluster Detection, Disease Mapping
Author: Cici Chen
Maintainer: Albert Y. Kim
Diff between SpatialEpi versions 1.1 dated 2013-01-05 and 1.2 dated 2014-05-02
DESCRIPTION | 20 +++++++++----------- MD5 | 18 +++++++++++------- NAMESPACE | 13 ++++++++++++- R/EBpostdens.R |only R/EBpostthresh.R |only R/estimate.q.R | 4 ++-- man/EBpostdens.Rd |only man/EBpostthresh.Rd |only man/bayes.cluster.Rd | 3 ++- man/kulldorff.Rd | 9 ++++++--- man/mapvariable.Rd | 3 ++- man/plotmap.Rd | 3 ++- 12 files changed, 46 insertions(+), 27 deletions(-)
Title: R binding for cppbugs
Description: R binding for cppbugs
Author: Whit Armstrong
Maintainer: Whit Armstrong
Diff between rcppbugs versions 0.1.4 dated 2013-08-28 and 0.1.4.1 dated 2014-05-02
DESCRIPTION | 11 +++++------ MD5 | 10 +++++----- NAMESPACE | 2 ++ src/Makevars | 2 +- src/Makevars.win | 4 ++-- src/cppbugs/cppbugs/mcmc.math.hpp | 2 +- 6 files changed, 16 insertions(+), 15 deletions(-)
Title: Conversion of R regression output to LaTeX or HTML tables.
Description: texreg converts coefficients, standard errors, significance stars, and goodness-of-fit statistics of statistical models into LaTeX tables or HTML tables/MS Word documents or to nicely formatted screen output for the R console for easy model comparison. A list of several models can be combined in a single table. The output is highly customizable. New model types can be easily implemented.
Author: Philip Leifeld
Maintainer: Philip Leifeld
Diff between texreg versions 1.31 dated 2014-02-13 and 1.32 dated 2014-05-02
DESCRIPTION | 14 +- MD5 | 28 ++--- NAMESPACE | 3 R/extract.R | 264 ++++++++++++++++++++++++++++++++++++++++++++++--- R/internal.R | 72 +++++++++++++ R/texreg.R | 27 +++-- build/vignette.rds |binary inst/doc/v55i08.R | 46 ++++---- inst/doc/v55i08.Rnw | 13 +- inst/doc/v55i08.pdf |binary man/extract-methods.Rd | 15 ++ man/extract.Rd | 23 +++- man/texreg.Rd | 9 - vignettes/v55i08.Rnw | 13 +- vignettes/v55i08.bib | 12 +- 15 files changed, 448 insertions(+), 91 deletions(-)
Title: Utilities for working with SQL files.
Description: This package provides utilities for working with a library of SQL
files.
Author: Jason Bryer
Maintainer: Jason Bryer
Diff between sqlutils versions 1.1.1 dated 2013-12-07 and 1.1.2 dated 2014-05-02
DESCRIPTION | 11 ++---- MD5 | 64 ++++++++++++++++++------------------ NAMESPACE | 5 ++ NEWS | 9 +++-- R/cacheQuery.r | 4 +- R/sqldoc.r | 19 +++++++++- R/sqlexec.R | 4 -- R/sqlutils-package.r | 3 + build/vignette.rds |binary inst/doc/DataDictionary.pdf |binary man/cacheQuery.Rd | 37 +++++++++----------- man/execQuery.Rd | 26 ++++++-------- man/getCacheFilename.Rd | 15 ++++---- man/getParameters.Rd | 10 ++--- man/getQueries.Rd | 6 +-- man/getSQL.Rd | 11 +++--- man/getSQLRaw.Rd | 10 ++--- man/is.null.string.Rd | 10 ++--- man/isql.Rd | 25 ++++++-------- man/parse.element.Rd | 14 +++---- man/parse.introduction.Rd | 12 +++--- man/print.Rd | 9 ++--- man/recodeColumns.Rd | 12 +++--- man/sqlFile.Rd | 9 ++--- man/sqlPaths.Rd | 11 ++---- man/sqldoc.Rd | 12 +++--- man/sqlexec.PostgreSQLConnection.Rd | 15 +++----- man/sqlexec.RMySQL.Rd | 14 +++---- man/sqlexec.RODBC.Rd | 14 +++---- man/sqlexec.Rd | 14 +++---- man/sqlexec.SQLiteConnection.Rd | 14 +++---- man/sqlutils-package.Rd | 5 +- man/sqlutils.envir.Rd | 8 ++-- 33 files changed, 222 insertions(+), 210 deletions(-)
Title: R interface to many species occurrence data sources
Description: A programmatic interface to many species occurrence data sources,
including GBIF, USGS's BISON, iNaturalist, Berkeley Ecoinformatics Engine
eBird, AntWeb, and more as they sources become easily available.
Author: Scott Chamberlain [aut, cre],
Karthik Ram [aut],
Ted Hart [aut]
Maintainer: Scott Chamberlain
Diff between spocc versions 0.1.0 dated 2014-03-05 and 0.1.2 dated 2014-05-02
DESCRIPTION | 20 +++-- MD5 | 97 ++++++++++++++---------- NAMESPACE | 6 + NEWS | 18 ++++ R/clean_spocc.r |only R/fixnames.r | 13 +++ R/mapgist.r | 2 R/mapleaflet.r | 6 - R/methods.r | 26 +++--- R/occ.r | 20 +++-- R/occ_to_sp.r | 10 +- R/util_github.r | 4 - R/wkt_vis.r |only R/zzz.r | 6 - README.md | 43 +++------- build |only inst |only man/basemaps.Rd | 1 man/bbox2wkt.Rd | 29 ++----- man/clean_spocc.Rd |only man/fixnames.Rd | 42 ++++++---- man/get_colors.Rd | 8 +- man/get_palette.Rd | 3 man/mapggplot.Rd | 8 +- man/mapgist.Rd | 50 +++++------- man/mapleaflet.Rd | 80 +++++++++----------- man/occ.Rd | 158 ++++++++++++++++++---------------------- man/occ2df.Rd | 7 + man/occ2sp.Rd | 17 ++-- man/occ_options.Rd | 21 ++--- man/occ_to_sp.Rd | 21 +---- man/occdat.Rd | 11 +- man/palettes.Rd | 1 man/spocc_blanktheme.Rd | 1 man/spocc_capwords.Rd | 10 +- man/spocc_colClasses.Rd | 7 + man/spocc_commas_to_periods.Rd | 3 man/spocc_create_gist.Rd | 10 +- man/spocc_gbifxmlToDataFrame.Rd | 8 +- man/spocc_get_credentials.Rd | 1 man/spocc_gist.Rd | 35 ++++---- man/spocc_parseresults.Rd | 7 + man/spocc_rcharts_togeojson.Rd | 7 + man/spocc_stylegeojson.Rd | 21 ++--- man/spocc_togeojson.Rd | 46 +++++------ man/wkt_vis.Rd |only tests |only vignettes |only 48 files changed, 453 insertions(+), 431 deletions(-)
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Title: Rcpp bindings for Sequential Monte Carlo
Description: This package provides R with access to the Sequential
Monte Carlo Template Classes by Johansen (Journal of Statistical
Software, 2009, v30, i6).
At present, two additional examples have been added, and the first
example from the JSS paper has been extended. Further integration
and extensions are planned.
Author: Dirk Eddelbuettel and Adam M. Johansen
Maintainer: Dirk Eddelbuettel
Diff between RcppSMC versions 0.1.2 dated 2014-02-06 and 0.1.3 dated 2014-05-02
ChangeLog | 13 ++++++++++++- DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- cleanup | 2 +- inst/NEWS.Rd | 7 +++++++ src/pflineart.cpp | 7 ++++++- 6 files changed, 35 insertions(+), 12 deletions(-)
Title: Biplot representations of categorical data
Description: Analysis of a matrix of polytomous items using Nominal Logistic Biplots (NLB)
according to Hernandez-Sanchez and Vicente-Villardon (2013).
The NLB procedure extends the binary logistic biplot to nominal (polytomous) data.
The individuals are represented as points on a plane and the variables are represented
as convex prediction regions rather than vectors as in a classical or binary biplot.
Using the methods from Computational Geometry, the set of prediction regions is converted to a set of points
in such a way that the prediction for each individual is established by its closest
"category point". Then interpretation is based on distances rather than on projections.
In this package we implement the geometry of such a representation and construct computational algorithms
for the estimation of parameters and the calculation of prediction regions.
Author: Julio Cesar Hernandez Sanchez, Jose Luis Vicente-Villardon
Maintainer: Julio Cesar Hernandez Sanchez
Diff between NominalLogisticBiplot versions 0.1 dated 2013-09-17 and 0.2 dated 2014-05-02
DESCRIPTION | 8 - MD5 | 71 ++++++----- NAMESPACE | 3 R/Generators.R | 46 ++----- R/Nominal2Binary.R | 2 R/NominalDistances.R | 4 R/NominalLogBiplotEM.R | 77 ++++++++---- R/NominalLogisticBiplot.R | 178 ++++++++++++++++++----------- R/NominalMatrix2Binary.R | 1 R/PCoA.R | 2 R/RidgeMultinomialRegression.R | 9 + R/afc.R | 67 ++++++++--- R/auxLibrary.R | 201 ++++++++++++++++++++------------- R/hermquad.R | 2 R/multiquad.R | 5 R/plotNominalFittedVariable.r |only R/plotNominalVariable.r |only R/polylogist.R | 49 ++++---- data/PhD_nomCyL.rda |only inst |only man/Env.Rd | 13 +- man/Generators.Rd | 6 man/HairColor.Rd | 4 man/Nominal2Binary.Rd | 12 - man/NominalDistances.Rd | 8 - man/NominalLogBiplotEM.Rd | 23 ++- man/NominalLogisticBiplot-package.Rd | 4 man/NominalLogisticBiplot.Rd | 35 ++++- man/NominalMatrix2Binary.Rd | 4 man/PCoA.Rd | 4 man/PhD_nomCyL.Rd |only man/RidgeMultinomialRegression.Rd | 8 - man/afc.Rd | 29 +++- man/hermquad.Rd | 6 man/multiquad.Rd | 4 man/plot.nominal.logistic.biplot.Rd | 2 man/plotNominalFittedVariable.Rd |only man/plotNominalVariable.Rd |only man/polylogist.Rd | 4 man/summary.nominal.logistic.biplot.Rd | 12 + 40 files changed, 558 insertions(+), 345 deletions(-)
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Title: Bayesian calculation of gene-specific FST from genomic SNP data
Description: GeneFeST is a genome scan method to detect outlier loci (genes) which are under balancing or directional selection.
Author: Bastian Pfeifer
Maintainer: Bastian Pfeifer
Diff between GeneFeST versions 1.0.0 dated 2014-03-24 and 1.0.1 dated 2014-05-02
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/slim.R | 9 +++++++-- R/update_slim.R | 33 ++++++++------------------------- inst/doc/Input_format.Rnw | 2 +- inst/doc/Input_format.pdf |binary man/GeneFeST.Rd | 24 +++++++++++++----------- vignettes/Input_format.Rnw | 2 +- 8 files changed, 40 insertions(+), 50 deletions(-)