Title: Common types for tawny
Diff between tawny.types versions 1.1.1 dated 2014-01-24 and 1.1.3 dated 2014-05-06
Description: Base library of types for tawny and related packages
Author: Brian Lee Yung Rowe
Maintainer: Brian Lee Yung Rowe
tawny.types-1.1.1/tawny.types/R/types.R |only
tawny.types-1.1.1/tawny.types/inst/unitTests/Makefile |only
tawny.types-1.1.3/tawny.types/DESCRIPTION | 15 ++++++++-------
tawny.types-1.1.3/tawny.types/MD5 | 10 +++++-----
tawny.types-1.1.3/tawny.types/NAMESPACE | 2 +-
tawny.types-1.1.3/tawny.types/R/matrix.R |only
tawny.types-1.1.3/tawny.types/R/portfolio.R |only
tawny.types-1.1.3/tawny.types/man/tawny.types-package.Rd | 6 ++++--
8 files changed, 18 insertions(+), 15 deletions(-)
Title: Variational Bayesian mixture models
Diff between VBmix versions 0.2.16 dated 2014-02-04 and 0.2.17 dated 2014-05-06
Description: Variational algorithms and methods for fitting mixture
models. Main functions are varbayes, vbcomp, vbconstr, mppca,
mmppca and gmmkmsock.
Author: Pierrick Bruneau
Maintainer: Pierrick Bruneau
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/Rutils.R | 29 ++++++++++++++++++-----------
man/dat1sample.Rd | 5 +++--
man/dat3sample.Rd | 7 ++++---
5 files changed, 33 insertions(+), 24 deletions(-)
Title: Ridge Estimation of Precision Matrices from High-Dimensional
Data
Diff between rags2ridges versions 1.1 dated 2014-03-07 and 1.2 dated 2014-05-06
Description: Package contains proper L2-penalized ML estimators for the precision matrix as well as supporting functions to employ these estimators in a graphical modeling setting.
Author: Carel F.W. Peeters, Wessel N. van Wieringen
Maintainer: Carel F.W. Peeters
DESCRIPTION | 8
MD5 | 25 +-
R/rags2ridges.R | 422 +++++++++++++++++++++++++++++++++++++++++++++--
man/KLdiv.Rd |only
man/Ugraph.Rd | 5
man/conditionNumber.Rd |only
man/covML.Rd |only
man/edgeHeat.Rd | 4
man/evaluateS.Rd |only
man/loss.Rd | 14 -
man/optPenalty.aLOOCV.Rd |only
man/optPenaltyCV.Rd | 24 +-
man/pcor.Rd | 5
man/ridgeS.Rd | 2
man/sparsify.Rd | 11 -
man/symm.Rd | 3
16 files changed, 462 insertions(+), 61 deletions(-)
Title: R tools for making it easier to combine and clean data sets.
Diff between DataCombine versions 0.1.24 dated 2014-04-07 and 0.1.26 dated 2014-05-06
Description: R tools for combining and cleaning data sets, including filling in
missing observations with data from another data frame and creating
lag/lead variables.
Author: Christopher Gandrud
Maintainer: Christopher Gandrud
DESCRIPTION | 10 -
MD5 | 50 ++++----
NAMESPACE | 4
NEWS | 49 ++++++--
R/DropNA.R | 30 +++--
R/internals.R |only
R/slide.R | 300 ++++++++++++++++++++++++++++-------------------------
R/utils.R | 165 ++++++++++++++++++-----------
README.md | 15 +-
man/DropNA.Rd | 20 +--
man/FillIn.Rd | 37 ++----
man/FindReplace.Rd | 40 ++-----
man/InsertRow.Rd |only
man/MoveFront.Rd | 29 +----
man/NaVar.Rd | 32 ++---
man/PercChange.Rd | 31 +----
man/SpreadDummy.Rd | 30 +----
man/StartEnd.Rd | 29 +----
man/TimeFill.Rd | 35 +-----
man/VarDrop.Rd | 9 -
man/dMerge.Rd | 48 ++------
man/grepl.sub.Rd | 33 ++---
man/rmExcept.Rd | 19 +--
man/shift.Rd | 25 +---
man/shiftMA.Rd | 9 -
man/slide.Rd | 60 +++++-----
man/slideMA.Rd | 45 ++-----
27 files changed, 565 insertions(+), 589 deletions(-)
Title: Probabilistic Species Co-occurrence Analysis in R
Diff between cooccur versions 1.0 dated 2014-03-09 and 1.1 dated 2014-05-06
Description: This R package applies the probabilistic model of species co-occurrence (Veech 2013) to a set of species distributed among a set of survey or sampling sites. The algorithm calculates the observed and expected frequencies of co-occurrence between each pair of species. The expected frequency is based on the distribution of each species being random and independent of the other species. The analysis returns the probabilities that a more extreme (either low or high) value of co-occurrence could have been obtained by chance. The package also includes functions for visualizing species co-occurrence results and preparing data for downstream analyses.
Author: Daniel M. Griffith, Joseph A. Veech, and Charles J. Marsh
Maintainer: Daniel M. Griffith
DESCRIPTION | 12 ++++++------
MD5 | 34 +++++++++++++++++-----------------
NAMESPACE | 13 +++++++++++--
R/effect.sizes.R | 16 ++++++++++++----
R/plot.cooccur.R | 1 +
inst/CITATION | 2 +-
man/cooccur.Rd | 3 +--
man/coprob.Rd | 3 +--
man/coprobbase.Rd | 3 +--
man/effect.sizes.Rd | 3 +--
man/obs.v.exp.Rd | 3 +--
man/pair.Rd | 3 +--
man/pair.attributes.Rd | 3 +--
man/pair.profile.Rd | 3 +--
man/plot.cooccur.Rd | 3 +--
man/print.cooccur.Rd | 3 +--
man/prob.table.Rd | 3 +--
man/summary.cooccur.Rd | 3 +--
18 files changed, 60 insertions(+), 54 deletions(-)
Title: Heller-Heller-Gorfine Tests of Independence
Diff between HHG versions 1.3 dated 2014-03-18 and 1.4 dated 2014-05-06
Description: Heller-Heller-Gorfine (HHG) tests are a set of powerful statistical tests of independence between two random vectors of arbitrary dimensions. For the case of testing independence between random variables (rather than vectors), the package also offers implementations of the DDP and ADP tests, which are consistent against all continuous alternatives but are distribution-free and thus much faster to apply.
Author: Shachar Kaufman, based in part on an earlier implementation by Ruth Heller and Yair Heller.
Maintainer: Shachar Kaufman
DESCRIPTION | 10
MD5 | 26 -
R/HHG.R | 13
R/HHG_extras.R | 28 -
R/HHG_utils.R | 25 -
man/HHG-package.Rd | 9
man/hhg.example.datagen.Rd | 8
man/hhg.test.Rd | 42 +-
man/xdp.test.Rd | 22 -
src/HHG.cpp | 6
src/HHG.h | 26 +
src/SequentialTest.cpp | 2
src/StatsComputer.cpp | 682 ++++++++++++++++++++++++++++++++++++++++++---
src/StatsComputer.h | 14
14 files changed, 765 insertions(+), 148 deletions(-)
Title: Genetic Algorithms
Diff between GA versions 2.0 dated 2013-08-20 and 2.1 dated 2014-05-06
Description: An R package for optimization using genetic algorithms. The package provides a flexible general-purpose set of tools for implementing genetic algorithms search in both the continuous and discrete case, whether constrained or not. Users can easily define their own objective function depending on the problem at hand. Several genetic operators are available and can be combined to explore the best settings for the current task. Furthermore, users can define new genetic operators and easily evaluate their performances. GAs can be run sequentially or in parallel.
Author: Luca Scrucca
Maintainer: Luca Scrucca
GA-2.0/GA/inst/doc/gaJSS.R |only
GA-2.0/GA/inst/doc/gaParallel.R |only
GA-2.1/GA/DESCRIPTION | 10 -
GA-2.1/GA/MD5 | 37 +++----
GA-2.1/GA/NAMESPACE | 5
GA-2.1/GA/R/ga.R | 189 +++++++++++++++++++++----------------
GA-2.1/GA/R/gaGenOpe.R | 68 ++++++++-----
GA-2.1/GA/R/gaParallel.R | 7 -
GA-2.1/GA/R/miscfun.R | 36 +++++++
GA-2.1/GA/build |only
GA-2.1/GA/inst/NEWS | 24 ++++
GA-2.1/GA/inst/doc/gaJSS.pdf |binary
GA-2.1/GA/inst/doc/gaParallel.pdf |binary
GA-2.1/GA/man/GA-internal.Rd |only
GA-2.1/GA/man/GA-package.Rd |only
GA-2.1/GA/man/binary2gray.Rd | 2
GA-2.1/GA/man/ga-class.Rd | 50 +++++----
GA-2.1/GA/man/ga.Rd | 22 ++--
GA-2.1/GA/man/gaMonitor.Rd | 2
GA-2.1/GA/man/gaSummary.Rd |only
GA-2.1/GA/man/ga_pmutation.Rd |only
GA-2.1/GA/man/plot.ga-method.Rd | 7 -
GA-2.1/GA/man/summary.ga-method.Rd | 1
23 files changed, 293 insertions(+), 167 deletions(-)
Title: Designs of Computer Experiments
Diff between DiceDesign versions 1.4 dated 2014-01-10 and 1.5 dated 2014-05-06
Description: Space-Filling Designs and Uniformity Criteria.
Author: Jessica Franco, Delphine Dupuy, Olivier Roustant, Guillaume
Damblin and Bertrand Iooss.
Maintainer: Celine Helbert
DESCRIPTION | 8 ++--
MD5 | 8 ++--
R/discrepancyCriteria.R | 2 -
R/lhsDesign.R | 9 ++++-
R/optimalLHSDesigns.R | 85 ++++++++++++++++++++++++++++++++++++++++++++++--
5 files changed, 100 insertions(+), 12 deletions(-)
Title: Rcpp integration for the Eigen templated linear algebra library.
Diff between RcppEigen versions 0.3.2.1.1 dated 2014-03-07 and 0.3.2.1.2 dated 2014-05-06
Description: R and Eigen integration using Rcpp.
Eigen is a C++ template library for linear algebra: matrices,
vectors, numerical solvers and related algorithms. It supports dense
and sparse matrices on integer, floating point and complex numbers,
decompositions of such matrices, and solutions of linear systems. Its
performance on many algorithms is comparable with some of the best
implementations based on Lapack and level-3 BLAS.
The RcppEigen package includes the header files from the Eigen C++
template library (currently version 3.2.0). Thus users do not need to
install Eigen itself in order to use RcppEigen.
Since version 3.1.1, Eigen is licensed under the Mozilla Public License
(version 2); earlier version were licensed under the GNU LGPL version 3 or
later. RcppEigen (the Rcpp bindings/bridge to Eigen) is licensed under the
GNU GPL version 2 or later, as is the rest of Rcpp.
Author: Douglas Bates, Romain Francois and Dirk Eddelbuettel;
the authors of Eigen for the included version of Eigen
Maintainer: Dirk Eddelbuettel
ChangeLog | 6 ++++++
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
build/vignette.rds |binary
inst/NEWS.Rd | 7 +++++++
inst/doc/RcppEigen-Introduction.pdf |binary
inst/include/Eigen/src/Core/util/Memory.h | 11 +++++++----
7 files changed, 30 insertions(+), 14 deletions(-)
Title: Dirichlet Process Bayesian Clustering, Profile Regression
Diff between PReMiuM versions 3.0.24 dated 2014-04-07 and 3.0.26 dated 2014-05-06
Description: Dirichlet process Bayesian clustering, also known as profile regression.
Author: David I. Hastie
Maintainer: Silvia Liverani
ChangeLog | 7 +++++++
DESCRIPTION | 10 +++++-----
MD5 | 18 +++++++++---------
R/postProcess.R | 8 ++++----
man/calcPredictions.Rd | 4 ++--
man/plotPredictions.Rd | 2 +-
man/profRegr.Rd | 14 +++++++-------
src/Makevars.win | 3 ++-
src/include/Math/distribution.h | 7 +------
src/include/PReMiuMModel.h | 1 -
10 files changed, 38 insertions(+), 36 deletions(-)
Title: Sure Independence Screening
Diff between SIS versions 0.7-1 dated 2014-04-20 and 0.7-2 dated 2014-05-06
Description: (Iterative) Sure Independence Screening for Generalized Linear Models and Cox's Proportional Hazards Models
Author: Jianqing Fan, Yang Feng, Diego Franco Saldana, Richard Samworth, Yichao Wu
Maintainer: Diego Franco Saldana
SIS-0.7-1/SIS/R/partialfits.r |only
SIS-0.7-2/SIS/DESCRIPTION | 8 ++++----
SIS-0.7-2/SIS/MD5 | 19 ++++++++++---------
SIS-0.7-2/SIS/NAMESPACE | 4 ++--
SIS-0.7-2/SIS/R/SIS.R | 26 +++++++++++++++++++-------
SIS-0.7-2/SIS/R/obtainindex.R | 2 +-
SIS-0.7-2/SIS/R/partialfits.R |only
SIS-0.7-2/SIS/R/print.SIS.R | 2 --
SIS-0.7-2/SIS/man/SIS.Rd | 6 +++---
SIS-0.7-2/SIS/man/predict.SIS.Rd | 2 +-
SIS-0.7-2/SIS/man/print.SIS.Rd | 4 ++--
SIS-0.7-2/SIS/man/standardize.Rd |only
12 files changed, 42 insertions(+), 31 deletions(-)
Title: A collection of functions to support soil survey
Diff between sharpshootR versions 0.6-1 dated 2014-05-02 and 0.6-3 dated 2014-05-06
Description: A collection of functions to support soil survey
Author: USDA-NRCS Soil Survey Staff
Maintainer: Dylan Beaudette
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/diagnosticPropertyPlot.R | 10 +++++-----
man/SoilTaxonomyDendrogram.Rd | 2 ++
4 files changed, 14 insertions(+), 12 deletions(-)
Title: R Commander Plug-in for MPA Statistics
Diff between RcmdrPlugin.MPAStats versions 1.1.4 dated 2014-01-06 and 1.1.5 dated 2014-05-06
More information about RcmdrPlugin.MPAStats at CRAN
Description: This package provides an R Commander plugin that offers a
unified menu of new and pre-existing statistical functions
related to public management and policy analysis statistics.
Functions and menus have been renamed according to the usage
in PMGT 630 in the Master of Public Administration program at
Brigham Young University.
Author: Andrew Heiss, Richard Payne, Christa Schank
Maintainer: Andrew Heiss
CHANGELOG | 7
DESCRIPTION | 8 -
MD5 | 28 +--
R/DataframeSummary.R | 35 +---
R/RcmdrPlugin.MPAStats.R | 2
R/bivariate-analysis.R | 12 +
R/confidence-intervals.R | 37 +++--
R/logistic-regression.R | 6
R/multiple-regression.R | 6
R/t-test.R | 250 ++++++++++++++++++++++++++++++++---
R/wilcoxon-rank.R | 4
inst/CHANGELOG | 7
inst/etc/menus.txt | 10 +
man/RcmdrPlugin.MPAStats-internal.Rd | 4
man/RcmdrPlugin.MPAStats-package.Rd | 4
15 files changed, 333 insertions(+), 87 deletions(-)
Permanent link
Title: The OpenCPU system for embedded scientific computing and
reproducible research.
Diff between opencpu versions 1.4.0 dated 2014-04-12 and 1.4.1 dated 2014-05-06
Description: The OpenCPU system exposes an HTTP API for embedded scientific
computing with R. This provides reliable and scalable foundations for
integrating R based analysis and visualization modules into pipelines,
web applications or big data infrastructures. The OpenCPU server can
run either as a single-user development server within the interactive R
session, or as a high performance multi-user cloud server that builds
on Linux, Nginx and rApache. The current R package forms the core of
the system. When loaded in R, it automatically initiates the single-user
server and displays the web address in the console. For detailed
information and documentation on the API, visit the OpenCPU website.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms
DESCRIPTION | 31 ++++++++++---------
MD5 | 34 ++++++++++-----------
NEWS | 12 +++++++
R/httpget_webhook.R | 18 +++++++----
R/httpuv_fork.R | 67 +++++++++++++++++++++----------------------
R/parse_arg.R | 2 -
R/rapachehandler.R | 11 +++++--
R/req.R | 4 ++
R/request.R | 2 -
R/rhttpdhandler.R | 3 +
R/rookhandler.R | 3 +
R/session.R | 2 -
R/stop.R | 9 +++++
build/vignette.rds |binary
inst/config/defaults.conf | 1
inst/doc/opencpu-server.Rnw | 43 ++++++++++++++++++---------
inst/doc/opencpu-server.pdf |binary
vignettes/opencpu-server.Rnw | 43 ++++++++++++++++++---------
18 files changed, 175 insertions(+), 110 deletions(-)
More information about networkreporting at CRAN
Permanent link
Title: Calculates "vectorial Kappa", an index of congruence between
patchy mosaics.
Diff between KappaV versions 0.2 dated 2013-09-09 and 0.3 dated 2014-05-06
Description: this package allows to quantify the congruence between two patchy
mosaics or landscapes. This "vectorial Kappa" approach extends the
principle of Cohen's Kappa index by calculating areas of intersected
patches between two mosaics rather than agreement between pixels. It
provides an exact alternative for patchy mosaics when a Kappa index is
needed.
Author: Vincent Bonhomme
Maintainer: Vincent Bonhomme
KappaV-0.2/KappaV/man/KappaV-package.Rd |only
KappaV-0.3/KappaV/DESCRIPTION | 17 ++-
KappaV-0.3/KappaV/MD5 | 11 +-
KappaV-0.3/KappaV/NAMESPACE | 6 -
KappaV-0.3/KappaV/R/KappaV.R | 163 ++++++++++++++++++++++----------
KappaV-0.3/KappaV/README.md |only
KappaV-0.3/KappaV/inst |only
KappaV-0.3/KappaV/man/KappaV.Rd | 132 ++++++++++++++++---------
8 files changed, 220 insertions(+), 109 deletions(-)
Title: CRF - Conditional Random Fields
Diff between CRF versions 0.3-6 dated 2014-02-17 and 0.3-7 dated 2014-05-06
Description: This package implements modeling and computational tools for
conditional random fields model (CRF) as well as other probabilistic
undirected graphical models (UGM) of discrete data with pairwise and
unary potentials.
Author: Ling-Yun Wu [aut, cre]
Maintainer: Ling-Yun Wu
DESCRIPTION | 13 -
MD5 | 34 ++--
NAMESPACE | 1
R/misc.R | 20 +-
R/train.R | 16 --
data/Chain.RData |binary
data/Clique.RData |binary
data/Loop.RData |binary
data/Rain.RData |binary
data/Small.RData |binary
data/Tree.RData |binary
man/crf.nll.Rd | 4
man/crf.update.Rd | 4
man/make.crf.Rd | 10 -
man/train.crf.Rd | 4
src/Train.cpp | 406 ++++++++++++++++++++++++++++--------------------------
src/misc.h | 11 +
tests/test.crf.R | 4
18 files changed, 284 insertions(+), 243 deletions(-)
Title: Functions for simple A/B split test and multi-armed bandit
analysis
Diff between bandit versions 0.4.2 dated 2013-08-14 and 0.5.0 dated 2014-05-06
Description: A set of functions for doing analysis of A/B split test data and web metrics in general.
Author: Thomas Lotze and Markus Loecher
Maintainer: Thomas Lotze
DESCRIPTION | 14 ++++++------
MD5 | 24 ++++++++++++++-------
NAMESPACE | 2 +
R/best_binomial_bandit.R | 44 ++++++++++------------------------------
R/best_binomial_bandit_sim.R |only
R/deseasonalized_trend.R | 3 --
R/distribution_estimate.R | 13 +++++------
R/prob_winner.R |only
R/sim_post.R |only
R/summarize_metrics.R | 5 +---
R/value_remaining.R |only
man/bandit-package.Rd | 32 +++++++++++++----------------
man/best_binomial_bandit.Rd | 39 +++++++++++++++++++++++++----------
man/best_binomial_bandit_sim.Rd |only
man/prob_winner.Rd |only
man/sim_post.Rd |only
man/value_remaining.Rd |only
17 files changed, 88 insertions(+), 88 deletions(-)