Title: Interface to PLoS Journals search API.
Diff between rplos versions 0.3.6 dated 2013-11-12 and 0.4.0 dated 2014-05-13
Description: A programmatic interface to the
Web Service methods provided by the Public Library
of Science journals for search.
Author: Scott Chamberlain [aut, cre],
Carl Boettiger [aut],
Karthik Ram [aut]
Maintainer: Scott Chamberlain
rplos-0.3.6/rplos/R/crossref_r.R |only
rplos-0.3.6/rplos/man/crossref_r.Rd |only
rplos-0.3.6/rplos/man/getkey.Rd |only
rplos-0.3.6/rplos/man/ldfast.Rd |only
rplos-0.3.6/rplos/tests/testthat/test-crossref_r.R |only
rplos-0.3.6/rplos/vignettes/vignette.Rmd |only
rplos-0.3.6/rplos/vignettes/vignette.pdf |only
rplos-0.4.0/rplos/DESCRIPTION | 20 -
rplos-0.4.0/rplos/MD5 | 113 +++---
rplos-0.4.0/rplos/NAMESPACE | 17
rplos-0.4.0/rplos/NEWS | 37 +-
rplos-0.4.0/rplos/R/facetplos.r |only
rplos-0.4.0/rplos/R/fulltext.R |only
rplos-0.4.0/rplos/R/highbrow.r |only
rplos-0.4.0/rplos/R/highplos.r |only
rplos-0.4.0/rplos/R/plosabstract.R | 33 -
rplos-0.4.0/rplos/R/plosauthor.R | 26 -
rplos-0.4.0/rplos/R/plosfigtabcaps.R | 28 -
rplos-0.4.0/rplos/R/plossubject.R | 35 --
rplos-0.4.0/rplos/R/plostitle.R | 30 -
rplos-0.4.0/rplos/R/plosviews.R | 12
rplos-0.4.0/rplos/R/plosword.R | 64 +--
rplos-0.4.0/rplos/R/searchplos.R | 257 +++++++--------
rplos-0.4.0/rplos/R/utils.r |only
rplos-0.4.0/rplos/R/zzz.R | 96 ++---
rplos-0.4.0/rplos/README.md | 30 +
rplos-0.4.0/rplos/build |only
rplos-0.4.0/rplos/data/plosfields.rda |binary
rplos-0.4.0/rplos/inst |only
rplos-0.4.0/rplos/man/addmissing.Rd | 13
rplos-0.4.0/rplos/man/check_response.Rd |only
rplos-0.4.0/rplos/man/concat_todf.Rd | 12
rplos-0.4.0/rplos/man/crossref.Rd | 26 -
rplos-0.4.0/rplos/man/facetplos.Rd |only
rplos-0.4.0/rplos/man/formatarticleurl.Rd | 22 -
rplos-0.4.0/rplos/man/formatcrossref.Rd | 11
rplos-0.4.0/rplos/man/full_text_urls.Rd |only
rplos-0.4.0/rplos/man/highbrow.Rd |only
rplos-0.4.0/rplos/man/highplos.Rd |only
rplos-0.4.0/rplos/man/insertnones.Rd | 7
rplos-0.4.0/rplos/man/journalnamekey.Rd | 8
rplos-0.4.0/rplos/man/plos_fulltext.Rd |only
rplos-0.4.0/rplos/man/plosabstract.Rd | 131 +++----
rplos-0.4.0/rplos/man/plosauthor.Rd | 124 +++----
rplos-0.4.0/rplos/man/plosfields.Rd | 3
rplos-0.4.0/rplos/man/plosfigtabcaps.Rd | 124 +++----
rplos-0.4.0/rplos/man/plossubject.Rd | 133 +++----
rplos-0.4.0/rplos/man/plostitle.Rd | 127 +++----
rplos-0.4.0/rplos/man/plosviews.Rd | 32 -
rplos-0.4.0/rplos/man/plosword.Rd | 35 --
rplos-0.4.0/rplos/man/plot_throughtime.Rd | 33 -
rplos-0.4.0/rplos/man/rplos.Rd | 36 +-
rplos-0.4.0/rplos/man/searchplos.Rd | 202 ++++++-----
rplos-0.4.0/rplos/tests/test-all.R |only
rplos-0.4.0/rplos/tests/testthat/test-check_response.R |only
rplos-0.4.0/rplos/tests/testthat/test-plosabstract.R | 8
rplos-0.4.0/rplos/tests/testthat/test-plosauthor.R | 6
rplos-0.4.0/rplos/tests/testthat/test-plosfields.R | 2
rplos-0.4.0/rplos/tests/testthat/test-plosfigtabcaps.R | 4
rplos-0.4.0/rplos/tests/testthat/test-plossubject.R | 9
rplos-0.4.0/rplos/tests/testthat/test-plostitle.R | 10
rplos-0.4.0/rplos/tests/testthat/test-plosviews.R | 8
rplos-0.4.0/rplos/tests/testthat/test-plosword.R | 4
rplos-0.4.0/rplos/tests/testthat/test-plot_throughtime.R | 13
rplos-0.4.0/rplos/tests/testthat/test-searchplos.R | 8
rplos-0.4.0/rplos/vignettes/figure |only
rplos-0.4.0/rplos/vignettes/rplos_vignette.Rmd |only
67 files changed, 1004 insertions(+), 945 deletions(-)
Title: Gaussian linear models with linear covariance structure
Diff between regress versions 1.3-10 dated 2013-04-18 and 1.3-13 dated 2014-05-13
Description: Functions to fit Gaussian linear model by maximising the
residual log likelihood where the covariance structure can be
written as a linear combination of known matrices. Can be used
for multivariate models and random effects models. Easy
straight forward manner to specify random effects models,
including random interactions. Code now optimised to use
Sherman Morrison Woodbury identities for matrix inversion in
random effects models. We've added the ability to fit models
using any kernel as well as a function to return the mean and
covariance of random effects conditional on the data (BLUPs).
Author: David Clifford and Peter McCullagh. Additional contributions by
HJ Auinger.
Maintainer: David Clifford
DESCRIPTION | 10 +++----
MD5 | 8 ++---
R/MatrixInversions.R | 7 +++--
R/regress.R | 54 +++++++++-----------------------------
man/regress.Rd | 71 +++++++++++++++++++++++++++++++++------------------
5 files changed, 74 insertions(+), 76 deletions(-)
Title: Phylogenetic Tree Topological Properties Evaluator
Diff between phyloTop versions 1.1 dated 2014-05-10 and 1.1.1 dated 2014-05-13
Description: Calculates some topological properties of phylogenetic trees
Author: Michael Boyd and Caroline Colijn
Maintainer: Michael Boyd
DESCRIPTION | 6
MD5 | 4
R/Function_List_1.1.R | 362 +++++++++++++++++++++++++-------------------------
3 files changed, 186 insertions(+), 186 deletions(-)
Title: Multi-model inference
Diff between MuMIn versions 1.9.13 dated 2013-10-29 and 1.10.0 dated 2014-05-13
Description: Model selection and model averaging based on information criteria
(AICc and alike).
Author: Kamil Bartoń
Maintainer: Kamil Bartoń
MuMIn-1.10.0/MuMIn/DESCRIPTION | 17 -
MuMIn-1.10.0/MuMIn/MD5 | 82 ++++-----
MuMIn-1.10.0/MuMIn/NAMESPACE | 44 ++++
MuMIn-1.10.0/MuMIn/NEWS | 110 ++++++++++--
MuMIn-1.10.0/MuMIn/R/coefTable.R | 31 ++-
MuMIn-1.10.0/MuMIn/R/coeffs.R | 20 ++
MuMIn-1.10.0/MuMIn/R/dredge.R | 75 +++-----
MuMIn-1.10.0/MuMIn/R/ext.R | 37 ++++
MuMIn-1.10.0/MuMIn/R/get.models.R | 10 -
MuMIn-1.10.0/MuMIn/R/getAllTerms.R | 53 +++++
MuMIn-1.10.0/MuMIn/R/importance.R | 19 +-
MuMIn-1.10.0/MuMIn/R/makeArgs.R | 71 ++++++-
MuMIn-1.10.0/MuMIn/R/methods-logLik.R | 47 +++++
MuMIn-1.10.0/MuMIn/R/methods-nobs.R | 17 +
MuMIn-1.10.0/MuMIn/R/model.avg.R | 215 +++++++++++++-----------
MuMIn-1.10.0/MuMIn/R/model.sel.R | 70 ++++++-
MuMIn-1.10.0/MuMIn/R/model.selection.R | 201 ++++++++++++++++++++--
MuMIn-1.10.0/MuMIn/R/pdredge.R | 114 ++++++++----
MuMIn-1.10.0/MuMIn/R/r.squaredGLMM.R | 175 +++++++++++++------
MuMIn-1.10.0/MuMIn/R/utils-misc.R | 35 +++
MuMIn-1.10.0/MuMIn/R/utils-models.R | 79 +++++++-
MuMIn-1.10.0/MuMIn/data/Beetle.rda |binary
MuMIn-1.10.0/MuMIn/data/Cement.rda |binary
MuMIn-1.10.0/MuMIn/inst/TODO | 4
MuMIn-1.10.0/MuMIn/man/AICc.Rd | 2
MuMIn-1.10.0/MuMIn/man/MuMIn-package.Rd | 4
MuMIn-1.10.0/MuMIn/man/beetle.Rd | 2
MuMIn-1.10.0/MuMIn/man/dredge.Rd | 46 +++--
MuMIn-1.10.0/MuMIn/man/merge.model.selection.Rd |only
MuMIn-1.10.0/MuMIn/man/mod.sel.Rd | 13 +
MuMIn-1.10.0/MuMIn/man/model-utils.Rd | 6
MuMIn-1.10.0/MuMIn/man/model.avg.Rd | 65 ++++---
MuMIn-1.10.0/MuMIn/man/par.avg.Rd | 9 -
MuMIn-1.10.0/MuMIn/man/predict.averaging.Rd | 2
MuMIn-1.10.0/MuMIn/man/r.squaredGLMM.Rd | 41 ++--
MuMIn-1.10.0/MuMIn/man/supported-classes.Rd | 4
MuMIn-1.10.0/MuMIn/man/updateable.Rd | 2
MuMIn-1.10.0/MuMIn/tests/classes.R | 2
MuMIn-1.10.0/MuMIn/tests/coxme.R | 1
MuMIn-1.10.0/MuMIn/tests/misc-tests.R | 1
MuMIn-1.10.0/MuMIn/tests/singularities.R | 2
MuMIn-1.10.0/MuMIn/tests/unmarked.R | 1
MuMIn-1.9.13/MuMIn/tests/_gam.R |only
43 files changed, 1278 insertions(+), 451 deletions(-)
Title: Computing optimal cutpoints in diagnostic tests
Diff between OptimalCutpoints versions 1.1-1 dated 2014-02-25 and 1.1-2 dated 2014-05-13
More information about OptimalCutpoints at CRAN
Description: This package enables users to compute one or more optimal cutpoints for diagnostic tests or continuous markers. Various approaches for selecting optimal cutoffs have been implemented, including methods based on cost-benefit analysis and diagnostic test accuracy measures (Sensitivity/Specificity, Predictive Values and Diagnostic Likelihood Ratios). Numerical and graphical output for all methods is easily obtained.
Author: Monica Lopez-Raton, Maria Xose Rodriguez-Alvarez
Maintainer: Monica Lopez Raton
DESCRIPTION | 8 +--
MD5 | 86 ++++++++++++++++++++--------------------
NEWS | 5 +-
R/ci.exact.R | 16 +++----
R/ci.quadratic.R | 2
R/ci.wald.R | 2
R/confidence.intervals.R | 24 +++++------
R/function.CB.R | 2
R/function.MCT.R | 2
R/function.MaxDOR.R | 2
R/function.MaxEfficiency.R | 4 -
R/function.MaxKappa.R | 2
R/function.MaxNPVPPV.R | 2
R/function.MaxProdNPVPPV.R | 2
R/function.MaxProdSpSe.R | 2
R/function.MaxSe.R | 2
R/function.MaxSp.R | 2
R/function.MaxSpSe.R | 2
R/function.MaxSumNPVPPV.R | 2
R/function.MeanPrev.R | 2
R/function.MinPvalue.R | 2
R/function.MinValueNPV.R | 2
R/function.MinValueNPVPPV.R | 2
R/function.MinValuePPV.R | 2
R/function.MinValueSe.R | 2
R/function.MinValueSp.R | 2
R/function.MinValueSpSe.R | 2
R/function.Minimax.R | 2
R/function.NPVEqualPPV.R | 2
R/function.ObservedPrev.R | 2
R/function.PROC01.R | 2
R/function.PrevalenceMatching.R | 2
R/function.ROC01.R | 2
R/function.SpEqualSe.R | 2
R/function.ValueDLR.Negative.R | 2
R/function.ValueDLR.Positive.R | 2
R/function.ValueNPV.R | 2
R/function.ValuePPV.R | 2
R/function.ValueSe.R | 2
R/function.ValueSp.R | 2
R/function.Youden.R | 6 +-
R/optimal.cutpoints.default.R | 22 +++++-----
man/OptimalCutpoints-package.Rd | 4 -
man/control.cutpoints.Rd | 2
44 files changed, 125 insertions(+), 120 deletions(-)
Permanent link
Title: Sampling Variance Estimation
Diff between samplingVarEst versions 0.9-8 dated 2013-12-31 and 0.9-9 dated 2014-05-13
More information about samplingVarEst at CRAN
Description: Functions to calculate some point estimators and estimating their variance under unequal probability sampling. Single and two stage sampling designs are considered. Some approximations for the second order inclusion probabilities are also available (sample and population based).
Author: Emilio Lopez Escobar [aut, cre], Ernesto Barrios Zamudio [ctb]
Maintainer: Emilio Lopez Escobar
ChangeLog | 5 +++++
DESCRIPTION | 10 +++++-----
MD5 | 6 +++---
README | 4 ++--
4 files changed, 15 insertions(+), 10 deletions(-)
Permanent link
Title: Sampling Estimates
Diff between samplingEstimates versions 0.1-2 dated 2013-11-28 and 0.1-3 dated 2014-05-13
More information about samplingEstimates at CRAN
Description: Functions to estimate from survey data. This package is a user-friendly wrapper of the samplingVarEst package. It considers that the user is more familiar with practical survey data rather than with research on survey sampling (variance estimation). More functionalities are on the way.
Author: Emilio Lopez Escobar [aut, cre]
Maintainer: Emilio Lopez Escobar
ChangeLog | 20 ++++++++++++++------
DESCRIPTION | 13 +++++++------
GPL-2 |only
LICENCE.note |only
MD5 | 7 +++++--
README |only
6 files changed, 26 insertions(+), 14 deletions(-)
Permanent link
Title: N-Parameter Logistic Regression
Diff between nplr versions 0.1 dated 2014-05-04 and 0.1-1 dated 2014-05-13
Description: N-Parameter Logistic Regression
Author: Frederic Commo [aut, cre],
Brian M. Bot [aut]
Maintainer: Frederic Commo
DESCRIPTION | 8 ++++----
MD5 | 20 ++++++++++----------
R/getEstimates.R | 4 ++--
R/helpers.R | 33 +++++++++++++++++----------------
R/plot.nplr.R | 12 ++++++------
inst/doc/nplr.R | 10 +++++-----
inst/doc/nplr.Rnw | 42 +++++++++++++++++++++++++++++++-----------
inst/doc/nplr.pdf |binary
man/convertToProp.Rd | 2 +-
man/plot.nplr.Rd | 10 +++++-----
vignettes/nplr.Rnw | 42 +++++++++++++++++++++++++++++++-----------
11 files changed, 112 insertions(+), 71 deletions(-)
Title: Multiple Aggregation Prediction Algorithm
Diff between MAPA versions 1.3 dated 2014-04-15 and 1.4 dated 2014-05-13
Description: This package contains functions and wrappers for using the Multiple Aggregation Prediction Algorithm, proposed by Kourentzes et al. (2014).
Author: Nikolaos Kourentzes and Fotios Petropoulos
Maintainer: Nikolaos Kourentzes
ChangeLog | 3 +
DESCRIPTION | 6 +-
MD5 | 12 ++---
R/MAPA.R | 114 ++++++++++++++++++++++++++++++++++++++++++++++--------
man/mapa.Rd | 5 +-
man/mapaest.Rd | 5 +-
man/mapasimple.Rd | 9 ++--
7 files changed, 124 insertions(+), 30 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-09-30 1.1-3
2011-02-10 1.1-2
2010-09-06 1.1-1
2010-09-05 1.1-0
2009-04-21 1.0-4
2007-09-30 1.0-3
2005-10-25 1.0-2
Title: Miscellaneous functions for survival data.
Diff between survMisc versions 0.4 dated 2013-10-06 and 0.4.2 dated 2014-05-13
Description: A collection of functions for analysis of survival data. These
extend the methods available in package survival.
Author: Chris Dardis
Maintainer: Chris Dardis
survMisc-0.4.2/survMisc/DESCRIPTION | 31
survMisc-0.4.2/survMisc/MD5 | 76 +
survMisc-0.4.2/survMisc/NAMESPACE | 21
survMisc-0.4.2/survMisc/R/autoplot.R | 575 +++++++------
survMisc-0.4.2/survMisc/R/autoplotRpart.R |only
survMisc-0.4.2/survMisc/R/autoplotTAP.R |only
survMisc-0.4.2/survMisc/R/calcSurv.R | 144 +--
survMisc-0.4.2/survMisc/R/comp.R | 129 +--
survMisc-0.4.2/survMisc/R/cutp.R | 16
survMisc-0.4.2/survMisc/R/dxPlot.R | 803 +++++++++----------
survMisc-0.4.2/survMisc/R/gamTerms.R | 283 +++---
survMisc-0.4.2/survMisc/R/genSurv.R |only
survMisc-0.4.2/survMisc/R/ic.R |only
survMisc-0.4.2/survMisc/R/local.R | 460 +++++-----
survMisc-0.4.2/survMisc/R/meanSurv.R | 298 +++----
survMisc-0.4.2/survMisc/R/multiCoxph.R |only
survMisc-0.4.2/survMisc/R/plotMultiCoxph.R |only
survMisc-0.4.2/survMisc/R/quantile.R | 704 ++++++++--------
survMisc-0.4.2/survMisc/R/sig.R | 193 ++--
survMisc-0.4.2/survMisc/R/survMisc_package.R |only
survMisc-0.4.2/survMisc/R/tableRhs.R |only
survMisc-0.4.2/survMisc/R/tne.R | 496 ++++++-----
survMisc-0.4.2/survMisc/data/air.rda |binary
survMisc-0.4.2/survMisc/data/btumors.rda |binary
survMisc-0.4.2/survMisc/data/gastric.rda |binary
survMisc-0.4.2/survMisc/data/tneBMT.rda |binary
survMisc-0.4.2/survMisc/data/tneKidney.rda |binary
survMisc-0.4.2/survMisc/data/whas100.rda |binary
survMisc-0.4.2/survMisc/man/autoplot.rpart.Rd |only
survMisc-0.4.2/survMisc/man/autoplot.survfit.Rd |only
survMisc-0.4.2/survMisc/man/autoplot.tableAndPlot.Rd |only
survMisc-0.4.2/survMisc/man/comp.Rd | 27
survMisc-0.4.2/survMisc/man/cutp.Rd | 2
survMisc-0.4.2/survMisc/man/dxPlot.Rd | 2
survMisc-0.4.2/survMisc/man/gamTerms.Rd | 7
survMisc-0.4.2/survMisc/man/genSurv.Rd |only
survMisc-0.4.2/survMisc/man/ic.Rd |only
survMisc-0.4.2/survMisc/man/local.Rd | 52 -
survMisc-0.4.2/survMisc/man/mean.Surv.Rd | 36
survMisc-0.4.2/survMisc/man/multi.Rd |only
survMisc-0.4.2/survMisc/man/plotMultiCoxph.Rd |only
survMisc-0.4.2/survMisc/man/sig.Rd |only
survMisc-0.4.2/survMisc/man/survMisc-package.Rd |only
survMisc-0.4.2/survMisc/man/tableRhs.Rd |only
survMisc-0.4.2/survMisc/man/tne.Rd | 131 +--
survMisc-0.4/survMisc/R/genDfSurv.R |only
survMisc-0.4/survMisc/R/getSurvNames.R |only
survMisc-0.4/survMisc/R/renameFact.R |only
survMisc-0.4/survMisc/man/Sig.Rd |only
survMisc-0.4/survMisc/man/autoplot.Rd |only
survMisc-0.4/survMisc/man/genDfSurv.Rd |only
51 files changed, 2359 insertions(+), 2127 deletions(-)
Title: Spatial Forecast Verification
Diff between SpatialVx versions 0.2-0 dated 2014-03-28 and 0.2-1 dated 2014-05-13
Description: Functions to perform spatial forecast verification
Author: Eric Gilleland
Maintainer: Eric Gilleland
DESCRIPTION | 10 +++---
MD5 | 14 ++++-----
R/Features.R | 25 +++++++++-------
R/LocMeasures.R | 2 -
R/Vgrams.R | 2 -
R/deltamm.R | 8 ++---
R/hiw.R | 85 ++++++++++++++++++++++++++++++++++++++++++--------------
man/hiw.Rd | 9 ++++-
8 files changed, 104 insertions(+), 51 deletions(-)
Title: PCPS - Principal Coordinates of Phylogenetic Structure
Diff between PCPS versions 1.0 dated 2014-04-30 and 1.0.1 dated 2014-05-13
Description: Set of functions for analysis of Principal Coordinates of Phylogenetic Structure (PCPS).
Author: Vanderlei Julio Debastiani
Maintainer: Vanderlei Julio Debastiani
DESCRIPTION | 11 ++++++-----
MD5 | 12 +++++++-----
NAMESPACE | 8 ++++----
R/define.clade.R |only
R/plot.pcpscurve.R | 15 ++++++---------
man/define.clade.Rd |only
man/pcoa.sig.Rd | 4 ++--
man/pcps.sig.Rd | 6 +++---
8 files changed, 28 insertions(+), 28 deletions(-)
Title: provides objects and tools to manipulate irregular heterogeneous
time data and subtime data.
Diff between timetools versions 1.5.2 dated 2013-05-05 and 1.6.0 dated 2014-05-13
Description: This package is intended to manipulate irregular time series such as subtime series, series based on time intervals, etc. This package uses only POSIX* format. Main things defined in this package are the classes POSIXcti, POSIXctp, TimeIntervalDataFrame, TimeInstantDataFrame, SubtimeDataFrame, methods to switch from one class to another and the changeSupport method for TimeIntervalDataFrame.
Author: Vladislav Navel
Maintainer: Vladislav Navel
timetools-1.5.2/timetools/man/POSIXst.Rd |only
timetools-1.5.2/timetools/man/RegularTimeInstantDataFrame.Rd |only
timetools-1.5.2/timetools/man/RegularTimeIntervalDataFrame.Rd |only
timetools-1.5.2/timetools/man/SubtimeDataFrame.Rd |only
timetools-1.5.2/timetools/man/TimeInstantDataFrame.Rd |only
timetools-1.5.2/timetools/man/TimeIntervalDataFrame.Rd |only
timetools-1.5.2/timetools/man/as.POSIXcti.Rd |only
timetools-1.5.2/timetools/man/as.POSIXctp.Rd |only
timetools-1.5.2/timetools/man/as.SubtimeDataFrame.Rd |only
timetools-1.5.2/timetools/man/as.TimeInstantDataFrame.Rd |only
timetools-1.5.2/timetools/man/as.TimeIntervalDataFrame.Rd |only
timetools-1.5.2/timetools/man/format.Rd |only
timetools-1.5.2/timetools/man/ops.posixctpi.Rd |only
timetools-1.6.0/timetools/DESCRIPTION | 16
timetools-1.6.0/timetools/MD5 | 86
timetools-1.6.0/timetools/NAMESPACE | 44
timetools-1.6.0/timetools/R/00generic.R | 56
timetools-1.6.0/timetools/R/01utils.R | 19
timetools-1.6.0/timetools/R/02posixctp.R | 89
timetools-1.6.0/timetools/R/03posixst-class.R | 41
timetools-1.6.0/timetools/R/SubtimeDataFrame.R | 38
timetools-1.6.0/timetools/R/TimeInstantDataFrame.R | 85
timetools-1.6.0/timetools/R/TimeIntervalDataFrame.R | 117
timetools-1.6.0/timetools/R/changeSupport.R | 151
timetools-1.6.0/timetools/R/compute.lim.R | 9
timetools-1.6.0/timetools/R/posixcti.R | 11
timetools-1.6.0/timetools/R/posixt.R | 96
timetools-1.6.0/timetools/R/split.R | 59
timetools-1.6.0/timetools/README | 22
timetools-1.6.0/timetools/man/POSIXcti-class.Rd | 272
timetools-1.6.0/timetools/man/POSIXctp-class.Rd | 297
timetools-1.6.0/timetools/man/POSIXst-class.Rd | 367
timetools-1.6.0/timetools/man/POSIXt.units.Rd | 20
timetools-1.6.0/timetools/man/SubtimeDataFrame-class.Rd | 302
timetools-1.6.0/timetools/man/TimeInstantDataFrame-class.Rd | 343
timetools-1.6.0/timetools/man/TimeIntervalDataFrame-class.Rd | 483
timetools-1.6.0/timetools/man/as.data.frame.Rd |only
timetools-1.6.0/timetools/man/continuous.Rd | 7
timetools-1.6.0/timetools/man/duration.Rd | 9
timetools-1.6.0/timetools/man/homogeneous.Rd | 4
timetools-1.6.0/timetools/man/included.Rd | 2
timetools-1.6.0/timetools/man/intersect.Rd | 2
timetools-1.6.0/timetools/man/interval.Rd | 4
timetools-1.6.0/timetools/man/overlapping.Rd | 3
timetools-1.6.0/timetools/man/period.Rd | 4
timetools-1.6.0/timetools/man/regular.Rd | 10
timetools-1.6.0/timetools/man/split.Rd | 61
timetools-1.6.0/timetools/man/timetools-package.Rd | 4
timetools-1.6.0/timetools/man/timezone.Rd | 21
timetools-1.6.0/timetools/man/when.Rd | 12
timetools-1.6.0/timetools/tests/posixst.Rout.save |14911 ++++------
51 files changed, 9272 insertions(+), 8805 deletions(-)
Title: Calculations and visualisations related to Geometric
Morphometrics
Diff between Morpho versions 2.0.2 dated 2014-02-24 and 2.0.3-1 dated 2014-05-13
Description: A toolset for Geometric Morphometrics and mesh processing. This
includes (among other stuff) mesh deformations based on reference points,
permutation tests, detection of outliers, processing of sliding
semi-landmarks and semi-automated surface landmark placement.
Author: Stefan Schlager
Maintainer: Stefan Schlager
DESCRIPTION | 8 -
MD5 | 237 ++++++++++++++++++++++++-----------------------
NAMESPACE | 6 +
R/Atlas.r | 11 ++
R/CVA.crova.r | 24 ----
R/CVA.r | 61 +++++++++---
R/Morpho-package.R | 4
R/ang.r | 8 +
R/asymPermu.r | 92 ++++++++++--------
R/bindArr.r | 5
R/cExtract.r | 14 +-
R/cutSpace.r |only
R/mesh2ply.r | 5
R/pcaplot3d.r | 36 +------
R/place.patch.r | 3
R/procSym.r | 10 +
R/quad2trimesh.r |only
R/rot.proc.r | 96 ++++++++-----------
R/rotonmat.r | 22 ++--
R/rotonto.r | 119 +++++++++++------------
R/slider3d.r | 2
R/solutionSpace.r |only
R/typprob.r | 4
R/updateNormals.r | 20 ++-
README.md | 19 +--
inst/NEWS.Rd | 22 ++++
man/CAC.Rd | 25 ++--
man/CVA.Rd | 115 +++++++++++++---------
man/CreateL.Rd | 39 +++----
man/Morpho-deprecated.Rd | 1
man/Morpho-package.Rd | 42 +++-----
man/NNshapeReg.Rd | 34 +++---
man/PCdist.Rd | 25 ++--
man/ProcGPA.Rd | 48 ++++-----
man/RegScore.Rd | 25 +---
man/angle.calc.Rd | 8 -
man/anonymize.Rd | 39 +++----
man/arrMean3.Rd | 9 -
man/asymPermute.Rd | 41 ++++----
man/barycenter.Rd | 9 -
man/bindArr.Rd | 17 +--
man/boneData.Rd | 5
man/cExtract.Rd | 19 +--
man/cSize.Rd | 4
man/checkLM.Rd | 79 +++++++--------
man/closemeshKD.Rd | 76 ++++++---------
man/colors.Rd | 1
man/conv2backf.Rd | 6 -
man/covDist.Rd | 68 +++++--------
man/covW.Rd | 5
man/createAtlas.Rd | 41 +++-----
man/cutMeshPlane.Rd |only
man/cutSpace.Rd |only
man/deformGrid3d.Rd | 41 +++-----
man/exVar.Rd | 38 +++----
man/find.outliers.Rd | 49 ++++-----
man/fixLMmirror.Rd | 23 +---
man/fixLMtps.Rd | 56 ++++-------
man/groupPCA.Rd | 87 ++++++++---------
man/histGroup.Rd | 52 ++++------
man/kendalldist.Rd | 9 -
man/lineplot.Rd | 18 +--
man/mcNNindex.Rd | 26 ++---
man/meanMat.Rd | 10 -
man/mergeMeshes.Rd | 9 -
man/mesh2grey.Rd | 6 -
man/mesh2ply.Rd | 37 +++----
man/meshDist.Rd | 127 +++++++++++--------------
man/meshcube.Rd | 7 -
man/meshres.Rd | 8 -
man/name2factor.Rd | 29 ++---
man/nose.Rd | 5
man/pcaplot3d.Rd | 30 ++---
man/permudist.Rd | 22 +---
man/permuvec.Rd | 54 ++++------
man/placePatch.Rd | 152 +++++++++++++-----------------
man/plotAtlas.Rd | 41 +++-----
man/plotNormals.Rd | 14 +-
man/pls2B.Rd | 66 +++++--------
man/ply2mesh.Rd | 28 ++---
man/predictShape.lm.Rd | 43 +++-----
man/proc.weight.Rd | 42 +++-----
man/procAOVsym.Rd | 32 ++----
man/procSym.Rd | 232 +++++++++++++++++++++-------------------------
man/projRead.Rd | 32 ++----
man/qqmat.Rd | 16 +--
man/quad2trimesh.Rd |only
man/r2morphoj.Rd | 17 +--
man/ray2mesh.Rd | 34 ++----
man/read.csv.folder.Rd | 39 +++----
man/read.lmdta.Rd | 16 +--
man/read.mpp.Rd | 12 +-
man/read.pts.Rd | 15 +-
man/readLandmarks.csv.Rd | 27 ++---
man/readallTPS.Rd | 17 +--
man/regdist.Rd | 43 +++-----
man/relWarps.Rd | 68 ++++++-------
man/relaxLM.Rd | 89 +++++++----------
man/render.Rd | 70 ++++++-------
man/rotaxis3d.Rd | 25 ++--
man/rotaxisMat.Rd | 5
man/rotmesh.onto.Rd | 27 ++---
man/rotonmat.Rd | 34 ++----
man/rotonto.Rd | 72 +++++++-------
man/scalemesh.Rd | 19 +--
man/showPC.Rd | 15 +-
man/slider3d.Rd | 225 +++++++++++++++++++-------------------------
man/solutionSpace.Rd |only
man/tanplan.Rd | 15 +-
man/tps3d.Rd | 25 ++--
man/typprob.Rd | 61 +++++-------
man/updateNormals.Rd | 22 +---
man/vecx.Rd | 21 +---
man/vertex.Rd | 47 +++------
man/warp.mesh.Rd | 26 ++---
man/warpmovie3d.Rd | 90 +++++++----------
man/write.pts.Rd | 17 +--
src/ang_calc.cpp | 18 +--
src/asymPerm.cpp | 55 ++++++++++
src/asymPerm.h | 2
src/doozers.cpp | 4
src/face_zero.cpp | 11 +-
src/points2mesh.cpp | 20 +--
123 files changed, 2113 insertions(+), 2240 deletions(-)
Title: Distance-based measures of spatial structures
Diff between dbmss versions 2.1.0 dated 2014-03-19 and 2.1.1 dated 2014-05-13
Description: This package allows simple computation of a full set of spatial statistic functions of distance, including classical ones (Ripley's K and others) and more recent ones used by spatial economists (Duranton and Overman's Kd, Marcon and Puech's M). It relies on spatstat for core calculation.
Author: Eric Marcon, Gabriel Lang, Stephane Traissac, Florence Puech
Maintainer: Eric Marcon
DESCRIPTION | 8 +-
MD5 | 78 ++++++++++++++--------------
NEWS | 108 +++++++++++++++++++++-------------------
R/GlobalEnvelope.R | 14 ++---
R/KdEnvelope.R | 2
R/Kdhat.R | 25 ++++++---
R/MEnvelope.R | 2
R/as.wmppp.ppp.R | 2
R/generic.spatstat.R |only
man/DEnvelope.Rd | 24 +++++---
man/Dhat.Rd | 8 +-
man/GoFtest.Rd | 9 ++-
man/KEnvelope.Rd | 23 +++++---
man/KdEnvelope.Rd | 25 +++++----
man/Kdhat.Rd | 10 ++-
man/Khat.Rd | 5 +
man/KinhomEnvelope.Rd | 29 +++++++---
man/Kinhomhat.Rd | 11 ++--
man/KmmEnvelope.Rd | 21 ++++---
man/Kmmhat.Rd | 7 +-
man/Ktest.Rd | 3 -
man/LEnvelope.Rd | 23 +++++---
man/Lhat.Rd | 2
man/LmmEnvelope.Rd | 21 ++++---
man/Lmmhat.Rd | 7 +-
man/MEnvelope.Rd | 25 +++++----
man/Mhat.Rd | 5 +
man/dbmss-package.Rd | 4 -
man/gEnvelope.Rd | 23 +++++---
man/generic.spatstat.Rd |only
man/ghat.Rd | 2
man/paracou16.Rd | 10 +--
man/rPopulationIndependenceM.Rd | 3 -
man/rRandomLabelingM.Rd | 3 -
man/rRandomLocation.Rd | 3 -
man/wmppp.object.Rd | 2
src/CountNbd.cpp | 23 +++-----
vignettes/figure/KdFig.pdf |binary
vignettes/figure/MFig.pdf |binary
vignettes/figure/P16Fig.pdf |binary
vignettes/figure/Toulouse.pdf |binary
41 files changed, 328 insertions(+), 242 deletions(-)
Title: Linear regression based on linear structure between covariates
Diff between CorReg versions 0.14.3 dated 2014-03-13 and 0.14.5 dated 2014-05-13
Description: Linear regression based on a recursive structural equation model
(explicit correlations) found by a MCMC algorithm. It permits to face
highly correlated covariates. Variable selection is included (by lasso,
elasticnet, etc.). It also provides some graphical tools for basic
statistics.
Author: Clement THERY [aut, cre],
Christophe BIERNACKI [ctb],
Gaetan LORIDANT [ctb],
Florian WATRIN [ctb],
Quentin GRIMONPREZ [ctb],
Vincent KUBICKI [ctb]
Maintainer: Clement THERY
DESCRIPTION | 23 ++++----
MD5 | 88 ++++++++++++++++---------------
NAMESPACE | 5 +
R/BicZ.R | 2
R/CorReg-package.R |only
R/ProbaZ.R | 6 +-
R/compare_beta.R |only
R/compare_sign.R | 35 ++++++------
R/compare_zero.R | 1
R/confint_coef.R | 33 ++++++++---
R/correg.R | 130 +++++++++++++++++++++++++++++++++++++++++++---
R/density_estimation.R | 10 ++-
R/mixture_generator.R | 88 ++++++++++++++++++++-----------
R/mon_AIC.R |only
R/recursive_tree.R | 2
R/searchZ.R | 19 ++----
man/BicZ.Rd | 23 +++-----
man/BicZcurve.Rd | 20 ++-----
man/CVMSE.Rd | 14 ++--
man/CorReg-package.Rd | 123 ++++++++++++++++++++-----------------------
man/MSEZ.Rd | 13 ++--
man/MSE_loc.Rd | 10 +--
man/OLS.Rd | 36 ++++--------
man/ProbaZ.Rd | 15 ++---
man/R2Z.Rd | 16 ++---
man/WhoIs.Rd | 5 +
man/Winitial.Rd | 31 ++++------
man/Y_generator.Rd | 20 +++----
man/cleanYtest.Rd | 15 ++---
man/cleanZ.Rd | 23 ++------
man/cleanZR2.Rd | 16 ++---
man/cleancolZ.Rd | 21 ++-----
man/compare_beta.Rd |only
man/compare_sign.Rd | 5 +
man/compare_struct.Rd | 11 +--
man/compare_zero.Rd | 8 +-
man/confint_coef.Rd | 26 +++++----
man/correg.Rd | 75 +++++++++++---------------
man/density_estimation.Rd | 28 ++++-----
man/hatB.Rd | 10 +--
man/mixture_generator.Rd | 82 ++++++++++++-----------------
man/readY.Rd | 17 ++----
man/readZ.Rd | 19 ++----
man/recursive_tree.Rd | 16 ++---
man/searchZ.Rd | 62 +++++++--------------
man/searchZ_sparse.Rd | 45 ++++++---------
man/showdata.Rd | 5 +
47 files changed, 658 insertions(+), 594 deletions(-)
Title: Analysis of Multivariate Event Times
Diff between mets versions 0.2.7 dated 2014-02-20 and 0.2.8 dated 2014-05-13
Description: Implementation of various statistical models for multivariate
event history data. Including multivariate cumulative incidence models, and
bivariate random effects probit models (Liability models). Also contains
two-stage binomial modelling that can do pairwise odds-ratio dependence
modelling based marginal logistic regression models. This is an alternative
to the alternating logistic regression approach (ALR).
Author: Klaus K. Holst and Thomas Scheike
Maintainer: Klaus K. Holst
mets-0.2.7/mets/man/bptwin2.Rd |only
mets-0.2.8/mets/DESCRIPTION | 22 -
mets-0.2.8/mets/MD5 | 146 ++++---
mets-0.2.8/mets/NAMESPACE | 157 ++++----
mets-0.2.8/mets/NEWS | 9
mets-0.2.8/mets/R/bicomprisk.R | 8
mets-0.2.8/mets/R/blocksample.R |only
mets-0.2.8/mets/R/bptwin.R | 56 +--
mets-0.2.8/mets/R/bptwin2.R | 2
mets-0.2.8/mets/R/cor.R | 32 +
mets-0.2.8/mets/R/cumh.R | 66 ---
mets-0.2.8/mets/R/fastreshape.R | 283 ---------------
mets-0.2.8/mets/R/ipw.R | 140 +++----
mets-0.2.8/mets/R/lifetable.R | 12
mets-0.2.8/mets/R/methodstwinlm.R | 5
mets-0.2.8/mets/R/mets-package.R | 3
mets-0.2.8/mets/R/phreg.R | 1
mets-0.2.8/mets/R/phreg.par.R |only
mets-0.2.8/mets/R/pmvn.R | 13
mets-0.2.8/mets/R/sim.clayton.oakes.R | 7
mets-0.2.8/mets/R/summary.biprobit.R | 2
mets-0.2.8/mets/R/summary.bptwin.R | 112 +++---
mets-0.2.8/mets/R/twinlm.R | 47 +-
mets-0.2.8/mets/R/twinlm.time.R |only
mets-0.2.8/mets/R/twostage.R | 10
mets-0.2.8/mets/R/utils.R | 44 ++
mets-0.2.8/mets/inst/misc/workshop-run.html | 478 ++++++++++++--------------
mets-0.2.8/mets/inst/misc/workshop-src.org |only
mets-0.2.8/mets/inst/misc/workshop.html | 238 +++++-------
mets-0.2.8/mets/man/ClaytonOakes.Rd | 46 --
mets-0.2.8/mets/man/Dbvn.Rd | 26 -
mets-0.2.8/mets/man/Grandom.cif.Rd | 193 ++++------
mets-0.2.8/mets/man/aalenfrailty.Rd | 29 -
mets-0.2.8/mets/man/back2timereg.Rd | 9
mets-0.2.8/mets/man/bicomprisk.Rd | 73 +--
mets-0.2.8/mets/man/binomial.twostage.Rd | 78 +---
mets-0.2.8/mets/man/blocksample.Rd |only
mets-0.2.8/mets/man/bptwin.Rd | 102 ++---
mets-0.2.8/mets/man/casewise.Rd | 14
mets-0.2.8/mets/man/casewise.test.Rd | 23 -
mets-0.2.8/mets/man/concordance.Rd | 27 -
mets-0.2.8/mets/man/cor.cif.Rd | 212 +++++------
mets-0.2.8/mets/man/dermalridges.Rd | 12
mets-0.2.8/mets/man/dermalridgesMZ.Rd | 12
mets-0.2.8/mets/man/easy.binomial.twostage.Rd | 82 ++--
mets-0.2.8/mets/man/easy.twostage.Rd | 79 +---
mets-0.2.8/mets/man/fast.approx.Rd | 16
mets-0.2.8/mets/man/fast.pattern.Rd | 20 -
mets-0.2.8/mets/man/fast.reshape.Rd | 48 +-
mets-0.2.8/mets/man/internal.Rd | 8
mets-0.2.8/mets/man/ipw.Rd | 36 -
mets-0.2.8/mets/man/lifetable.matrix.Rd | 29 -
mets-0.2.8/mets/man/mena.Rd | 6
mets-0.2.8/mets/man/mets-package.Rd | 10
mets-0.2.8/mets/man/migr.Rd | 4
mets-0.2.8/mets/man/multcif.Rd | 7
mets-0.2.8/mets/man/np.Rd | 6
mets-0.2.8/mets/man/phreg.Rd | 15
mets-0.2.8/mets/man/plack.cif.Rd | 13
mets-0.2.8/mets/man/printcasewisetest.Rd | 14
mets-0.2.8/mets/man/prt.Rd | 6
mets-0.2.8/mets/man/random.cif.Rd | 118 ++----
mets-0.2.8/mets/man/simAalenFrailty.Rd | 27 -
mets-0.2.8/mets/man/simClaytonOakes.Rd | 25 -
mets-0.2.8/mets/man/simClaytonOakesWei.Rd | 30 -
mets-0.2.8/mets/man/summary.cor.Rd | 58 +--
mets-0.2.8/mets/man/test.conc.Rd | 14
mets-0.2.8/mets/man/twinbmi.Rd | 4
mets-0.2.8/mets/man/twinlm.Rd | 96 ++---
mets-0.2.8/mets/man/twinsim.Rd | 48 +-
mets-0.2.8/mets/man/twinstut.Rd | 5
mets-0.2.8/mets/man/twostage.Rd | 85 ++--
mets-0.2.8/mets/src/claytonoakes.cpp | 9
mets-0.2.8/mets/src/cor.cpp | 273 +++++++++++++-
mets-0.2.8/mets/src/mvn.cpp | 77 ++--
mets-0.2.8/mets/src/mvn.h | 4
mets-0.2.8/mets/tests/testthat/test_reshape.R | 7
77 files changed, 1905 insertions(+), 2123 deletions(-)
Title: Pretty scientific plotting with minor-tick and log minor-tick
support
Diff between magicaxis versions 1.7 dated 2013-10-22 and 1.8 dated 2014-05-13
Description: Functions to make useful (and pretty) plots for scientific plotting. Additional plotting features are added for base plotting, with particular emphasis on making attractive log axis plots.
Author: Aaron Robotham
Maintainer: Aaron Robotham
DESCRIPTION | 10 +++++-----
MD5 | 28 ++++++++++++++--------------
NAMESPACE | 1 +
NEWS | 36 ++++++++++++++++++++++++++----------
R/magaxis.R | 4 ++--
R/magbar.R | 20 +++++++++++++++-----
R/magcon.R | 16 ++++++++++++----
R/magmap.R | 4 ++--
R/magplot.R | 2 +-
man/magaxis.Rd | 2 +-
man/magcon.Rd | 16 +++++++++++++---
man/magicaxis-package.Rd | 4 ++--
man/maglab.Rd | 2 +-
man/magmap.Rd | 2 +-
man/magplot.Rd | 2 +-
15 files changed, 97 insertions(+), 52 deletions(-)
Title: The Hilbert-Huang Transform: Tools and Methods
Diff between hht versions 2.0.1 dated 2014-01-16 and 2.0.2 dated 2014-05-13
Description: This package builds on the EMD package to provide additional tools for empirical mode decomposition (EMD) and Hilbert spectral analysis. It also implements the ensemble empirical decomposition (EEMD) method to avoid mode mixing and intermittency problems found in EMD analysis. The package comes with several plotting methods that can be used to view intrinsic mode functions, the HHT spectrum, and the Fourier spectrum. To see the version history and download the bleeding-edge version (at your own risk!), see the project website at code.google.com below. See the other links for PDF files describing numerical and exact analytical methods for determining instantaneous frequency, some examples of signals processed with this package, and some examples of the Ensemble Empirical Mode Decomposition method.
Author: Daniel C. Bowman [aut, cre],
Jonathan M. Lees [ctb]
Maintainer: Daniel C. Bowman
DESCRIPTION | 10 +++++-----
MD5 | 10 +++++-----
NEWS | 9 ++++++---
R/empirical_mode_decomposition.R | 6 +++---
R/rendering_and_plotting.R | 6 +++---
R/spectral_methods.R | 4 ++--
6 files changed, 24 insertions(+), 21 deletions(-)
Title: Generalized Regression on Orthogonal Components
Diff between groc versions 1.0.1 dated 2014-02-02 and 1.0.2 dated 2014-05-13
Description: Robust multiple or multivariate linear regression, nonparametric regression on orthogonal components, classical or robust partial least squares models
Author: M. Bilodeau and P. Lafaye de Micheaux
Maintainer: P. Lafaye de Micheaux
DESCRIPTION | 8 +-
MD5 | 10 +-
inst/HISTORY | 5 +
man/dcov.Rd | 2
man/groc.Rd | 205 ++++++++++++++++++++++++++++++++++++++++++++++++++--
man/predict.groc.Rd | 2
6 files changed, 217 insertions(+), 15 deletions(-)
Title: Social Relations Analyses with roles ("Family SRM")
Diff between fSRM versions 0.3.4 dated 2014-04-08 and 0.3.5 dated 2014-05-13
Description: The package computes Social Relations Analysis with roles ("Family
SRM"), using a structural equation modeling approach. Groups ranging from
three members up to an unlimited number of members are supported and the
mean structure can be computed. Means and variances can be compared between
different groups of families and between roles.
Author: Felix Schönbrodt, Lara Stas, Tom Loeys
Maintainer: Felix Schönbrodt
DESCRIPTION | 8 ++++----
MD5 | 14 +++++++-------
R/fSRM.R | 13 +++++++------
R/helpers.R | 2 ++
R/import.R | 16 +++++++++-------
R/print.fSRM.R | 9 ++++++---
inst/NEWS.Rd | 10 ++++++++++
man/fSRM.Rd | 2 +-
8 files changed, 46 insertions(+), 28 deletions(-)
Title: Bayesian spatial survival analysis with parametric proportional
hazards models.
Diff between spatsurv versions 0.9-1 dated 2014-03-27 and 0.9-2 dated 2014-05-13
Description: Survival analysis with parametric proportional hazards models where
the events have been geo-located.
Author: Benjamin M. Taylor and Barry S. Rowlingson
Maintainer: Benjamin M. Taylor
spatsurv-0.9-1/spatsurv/man/mcmcProgressTk.Rd |only
spatsurv-0.9-1/spatsurv/man/quadapprox.Rd |only
spatsurv-0.9-2/spatsurv/DESCRIPTION | 10
spatsurv-0.9-2/spatsurv/MD5 | 58 +-
spatsurv-0.9-2/spatsurv/NAMESPACE | 10
spatsurv-0.9-2/spatsurv/NEWS | 15
spatsurv-0.9-2/spatsurv/R/calibratemcmc.R | 261 ++++++++--
spatsurv-0.9-2/spatsurv/R/covarianceFunctions.R |only
spatsurv-0.9-2/spatsurv/R/exponential.R | 74 +-
spatsurv-0.9-2/spatsurv/R/likelihoodsPosteriorsPriors.R | 38 -
spatsurv-0.9-2/spatsurv/R/mcmcProgress.R | 67 +-
spatsurv-0.9-2/spatsurv/R/spatsurv.R | 4
spatsurv-0.9-2/spatsurv/R/spatsurvInternals.R |only
spatsurv-0.9-2/spatsurv/R/spatsurvMisc.R | 29 -
spatsurv-0.9-2/spatsurv/R/survsim.R | 12
spatsurv-0.9-2/spatsurv/R/survspat.R | 107 ++--
spatsurv-0.9-2/spatsurv/R/weibull.R | 74 +-
spatsurv-0.9-2/spatsurv/man/EvalCov.Rd |only
spatsurv-0.9-2/spatsurv/man/ExponentialCovFct.Rd |only
spatsurv-0.9-2/spatsurv/man/QuadApprox.Rd |only
spatsurv-0.9-2/spatsurv/man/SpikedExponentialCovFct.Rd |only
spatsurv-0.9-2/spatsurv/man/fixmatrix.Rd |only
spatsurv-0.9-2/spatsurv/man/getleneta.Rd |only
spatsurv-0.9-2/spatsurv/man/getparranges.Rd |only
spatsurv-0.9-2/spatsurv/man/logposterior.exp.Rd | 4
spatsurv-0.9-2/spatsurv/man/logposterior.exp.gridded.Rd | 4
spatsurv-0.9-2/spatsurv/man/logposterior.weibull.Rd | 6
spatsurv-0.9-2/spatsurv/man/logposterior.weibull.gridded.Rd | 4
spatsurv-0.9-2/spatsurv/man/proposalvariance.exp.Rd | 6
spatsurv-0.9-2/spatsurv/man/proposalvariance.exp.gridded.Rd | 4
spatsurv-0.9-2/spatsurv/man/proposalvariance.weibull.Rd | 4
spatsurv-0.9-2/spatsurv/man/proposalvariance.weibull.gridded.Rd | 4
spatsurv-0.9-2/spatsurv/man/simsurv.Rd | 10
spatsurv-0.9-2/spatsurv/man/survspat.Rd | 4
spatsurv-0.9-2/spatsurv/tests/test_QuadApprox.R |only
spatsurv-0.9-2/spatsurv/tests/test_survspat.R | 6
36 files changed, 524 insertions(+), 291 deletions(-)
Title: Random Forests for Survival, Regression and Classification
(RF-SRC)
Diff between randomForestSRC versions 1.4 dated 2013-12-10 and 1.5.0 dated 2014-05-13
More information about randomForestSRC at CRAN
Description: A unified treatment of Breiman's random forests for survival, regression and classification problems based on Ishwaran and Kogalur's random survival forests (RSF) package. The package runs in both serial and parallel (OpenMP) modes.
Author: Hemant Ishwaran
Maintainer: Udaya B. Kogalur
randomForestSRC-1.4/randomForestSRC/R/stat.split.R |only
randomForestSRC-1.5.0/randomForestSRC/DESCRIPTION | 10
randomForestSRC-1.5.0/randomForestSRC/MD5 | 201
randomForestSRC-1.5.0/randomForestSRC/R/data.utilities.R | 111
randomForestSRC-1.5.0/randomForestSRC/R/factor.utilities.R | 103
randomForestSRC-1.5.0/randomForestSRC/R/find.interaction.R | 4
randomForestSRC-1.5.0/randomForestSRC/R/generic.predict.rfsrc.R | 167
randomForestSRC-1.5.0/randomForestSRC/R/impute.rfsrc.R | 8
randomForestSRC-1.5.0/randomForestSRC/R/max.subtree.R | 4
randomForestSRC-1.5.0/randomForestSRC/R/plot.competing.risk.R | 2
randomForestSRC-1.5.0/randomForestSRC/R/plot.rfsrc.R | 4
randomForestSRC-1.5.0/randomForestSRC/R/plot.survival.R | 32
randomForestSRC-1.5.0/randomForestSRC/R/plot.variable.R | 28
randomForestSRC-1.5.0/randomForestSRC/R/predict.rfsrc.R | 8
randomForestSRC-1.5.0/randomForestSRC/R/print.rfsrc.R | 24
randomForestSRC-1.5.0/randomForestSRC/R/rf2rfz.R | 2
randomForestSRC-1.5.0/randomForestSRC/R/rfsrc.R | 84
randomForestSRC-1.5.0/randomForestSRC/R/rfsrc.news.R | 2
randomForestSRC-1.5.0/randomForestSRC/R/utilities.R | 409 +-
randomForestSRC-1.5.0/randomForestSRC/R/var.select.R | 15
randomForestSRC-1.5.0/randomForestSRC/R/vimp.R | 22
randomForestSRC-1.5.0/randomForestSRC/R/zzz.R | 2
randomForestSRC-1.5.0/randomForestSRC/configure.ac | 2
randomForestSRC-1.5.0/randomForestSRC/data/breast.rda |binary
randomForestSRC-1.5.0/randomForestSRC/data/follic.rda |binary
randomForestSRC-1.5.0/randomForestSRC/data/hd.rda |binary
randomForestSRC-1.5.0/randomForestSRC/data/pbc.rda |binary
randomForestSRC-1.5.0/randomForestSRC/data/vdv.rda |binary
randomForestSRC-1.5.0/randomForestSRC/data/veteran.rda |binary
randomForestSRC-1.5.0/randomForestSRC/data/wihs.rda |binary
randomForestSRC-1.5.0/randomForestSRC/inst/NEWS | 18
randomForestSRC-1.5.0/randomForestSRC/inst/doc/rsf-Rnews.pdf |binary
randomForestSRC-1.5.0/randomForestSRC/man/find.interaction.Rd | 2
randomForestSRC-1.5.0/randomForestSRC/man/impute.Rd | 20
randomForestSRC-1.5.0/randomForestSRC/man/plot.competing.risk.Rd | 5
randomForestSRC-1.5.0/randomForestSRC/man/plot.survival.Rd | 7
randomForestSRC-1.5.0/randomForestSRC/man/plot.variable.Rd | 23
randomForestSRC-1.5.0/randomForestSRC/man/predict.rfsrc.Rd | 26
randomForestSRC-1.5.0/randomForestSRC/man/print.rfsrc.Rd | 5
randomForestSRC-1.5.0/randomForestSRC/man/randomForestSRC_package.Rd | 7
randomForestSRC-1.5.0/randomForestSRC/man/rfsrc.Rd | 249 -
randomForestSRC-1.5.0/randomForestSRC/man/var.select.Rd | 3
randomForestSRC-1.5.0/randomForestSRC/man/vimp.Rd | 30
randomForestSRC-1.5.0/randomForestSRC/src/bootstrap.c | 4
randomForestSRC-1.5.0/randomForestSRC/src/bootstrap.h | 2
randomForestSRC-1.5.0/randomForestSRC/src/classification.c | 28
randomForestSRC-1.5.0/randomForestSRC/src/classification.h | 2
randomForestSRC-1.5.0/randomForestSRC/src/dataParser.c | 2
randomForestSRC-1.5.0/randomForestSRC/src/dataParser.h | 2
randomForestSRC-1.5.0/randomForestSRC/src/entry.c | 193
randomForestSRC-1.5.0/randomForestSRC/src/entry.h | 24
randomForestSRC-1.5.0/randomForestSRC/src/extern.h | 52
randomForestSRC-1.5.0/randomForestSRC/src/factor.h | 2
randomForestSRC-1.5.0/randomForestSRC/src/factorOps.c | 2
randomForestSRC-1.5.0/randomForestSRC/src/factorOps.h | 2
randomForestSRC-1.5.0/randomForestSRC/src/global.h | 44
randomForestSRC-1.5.0/randomForestSRC/src/importance.c | 245 -
randomForestSRC-1.5.0/randomForestSRC/src/importance.h | 26
randomForestSRC-1.5.0/randomForestSRC/src/impute.c | 172
randomForestSRC-1.5.0/randomForestSRC/src/impute.h | 2
randomForestSRC-1.5.0/randomForestSRC/src/node.h | 3
randomForestSRC-1.5.0/randomForestSRC/src/nodeOps.c | 79
randomForestSRC-1.5.0/randomForestSRC/src/nodeOps.h | 10
randomForestSRC-1.5.0/randomForestSRC/src/nrutil.c | 25
randomForestSRC-1.5.0/randomForestSRC/src/nrutil.h | 3
randomForestSRC-1.5.0/randomForestSRC/src/random.c | 131
randomForestSRC-1.5.0/randomForestSRC/src/random.h | 3
randomForestSRC-1.5.0/randomForestSRC/src/regression.c | 69
randomForestSRC-1.5.0/randomForestSRC/src/regression.h | 18
randomForestSRC-1.5.0/randomForestSRC/src/rfsrc.c | 206 -
randomForestSRC-1.5.0/randomForestSRC/src/rfsrc.h | 2
randomForestSRC-1.5.0/randomForestSRC/src/rfsrcUtil.c | 325 -
randomForestSRC-1.5.0/randomForestSRC/src/rfsrcUtil.h | 8
randomForestSRC-1.5.0/randomForestSRC/src/split.c | 521 +-
randomForestSRC-1.5.0/randomForestSRC/src/split.h | 26
randomForestSRC-1.5.0/randomForestSRC/src/splitClas.c | 914 ----
randomForestSRC-1.5.0/randomForestSRC/src/splitClas.h | 49
randomForestSRC-1.5.0/randomForestSRC/src/splitRegr.c | 1307 ------
randomForestSRC-1.5.0/randomForestSRC/src/splitRegr.h | 88
randomForestSRC-1.5.0/randomForestSRC/src/splitSurv.c | 2035 +++-------
randomForestSRC-1.5.0/randomForestSRC/src/splitSurv.h | 72
randomForestSRC-1.5.0/randomForestSRC/src/splitUspv.c | 1083 ++---
randomForestSRC-1.5.0/randomForestSRC/src/splitUspv.h | 30
randomForestSRC-1.5.0/randomForestSRC/src/splitUtil.c | 1168 ++++-
randomForestSRC-1.5.0/randomForestSRC/src/splitUtil.h | 295 +
randomForestSRC-1.5.0/randomForestSRC/src/stack.c | 513 +-
randomForestSRC-1.5.0/randomForestSRC/src/stack.h | 2
randomForestSRC-1.5.0/randomForestSRC/src/stackOutput.c | 81
randomForestSRC-1.5.0/randomForestSRC/src/stackOutput.h | 3
randomForestSRC-1.5.0/randomForestSRC/src/stackPreDefined.c | 123
randomForestSRC-1.5.0/randomForestSRC/src/stackPreDefined.h | 2
randomForestSRC-1.5.0/randomForestSRC/src/survival.c | 114
randomForestSRC-1.5.0/randomForestSRC/src/survival.h | 24
randomForestSRC-1.5.0/randomForestSRC/src/survivalE.c | 42
randomForestSRC-1.5.0/randomForestSRC/src/survivalE.h | 2
randomForestSRC-1.5.0/randomForestSRC/src/terminal.h | 4
randomForestSRC-1.5.0/randomForestSRC/src/trace.c | 25
randomForestSRC-1.5.0/randomForestSRC/src/trace.h | 3
randomForestSRC-1.5.0/randomForestSRC/src/tree.c | 402 +
randomForestSRC-1.5.0/randomForestSRC/src/tree.h | 8
randomForestSRC-1.5.0/randomForestSRC/src/treeUtil.c | 306 -
randomForestSRC-1.5.0/randomForestSRC/src/treeUtil.h | 3
102 files changed, 5949 insertions(+), 6621 deletions(-)
Permanent link
Title: adegenet: an R package for the exploratory analysis of genetic
and genomic data.
Diff between adegenet versions 1.4-1 dated 2014-03-18 and 1.4-2 dated 2014-05-13
Description: Classes and functions for genetic data analysis within the multivariate framework.
Author: Thibaut Jombart, Caitlin Collins, Peter Solymos, Ismail Ahmed, Federico Calboli, Anne Cori
Maintainer: Thibaut Jombart
ChangeLog | 12 +++++++++---
DESCRIPTION | 8 ++++----
MD5 | 24 ++++++++++++------------
R/basicMethods.R | 2 +-
R/dapc.R | 9 +++++++++
R/glSim.R | 12 +++++++-----
R/snpzip.R | 2 +-
R/xvalDapc.R | 12 +++++++++---
data/datalist | 2 +-
inst/dapcServer/server.R | 23 ++++++++++++++++++++---
inst/dapcServer/ui.R | 15 +++++++--------
man/adegenet.package.Rd | 23 ++++++++++++++++-------
man/glSim.Rd | 5 +++--
13 files changed, 99 insertions(+), 50 deletions(-)