Title: Models and Data Sets for the Study of Species-Area Relationships
Diff between sharx versions 1.0-3 dated 2012-08-09 and 1.0-4 dated 2014-05-19
Description: Data sets and SAR, SARX, HSAR and HSARX
models as described in Solymos and Lele
(2012, GEB 21, 109-120).
Author: Peter Solymos
Maintainer: Peter Solymos
DESCRIPTION | 14 ++++++++------
MD5 | 14 +++++++-------
NAMESPACE | 3 +++
R/sie.R | 4 ++--
inst/ChangeLog | 3 +++
man/hsarx.Rd | 19 +++++++++++++------
man/sardata.Rd | 21 ++++++++++++++-------
man/sie.Rd | 10 ++++++----
8 files changed, 56 insertions(+), 32 deletions(-)
Title: Population Viability Analysis with Data Cloning
Diff between PVAClone versions 0.1-1 dated 2012-08-25 and 0.1-2 dated 2014-05-19
Description: Likelihood based population viability analysis in the
presence of observation error and missing data.
The package can be used to fit, compare, predict,
and forecast various growth model types using data cloning.
Author: Khurram Nadeem, Peter Solymos
Maintainer: Peter Solymos
DESCRIPTION | 19 ++++++------
MD5 | 40 +++++++++++++-------------
NAMESPACE | 1
R/bevertonholt.R | 62 +++++++++++++++++++++++++++++-----------
R/gompertz.R | 52 ++++++++++++++++++++++++----------
R/ricker.R | 52 ++++++++++++++++++++++++----------
R/thetalogistic.R | 62 +++++++++++++++++++++++++++++-----------
R/thetalogistic_D.R | 73 ++++++++++++++++++++++++++++++++++--------------
data/paurelia.rda |binary
data/redstart.rda |binary
data/songsparrow.rda |binary
inst/ChangeLog | 8 ++++-
man/PVAClone-package.Rd | 12 +++----
man/generateLatent.Rd | 2 -
man/growthmodels.Rd | 21 +++++++++++--
man/internals.Rd | 4 +-
man/model.select.Rd | 8 ++---
man/pva-class.Rd | 6 +--
man/pva.Rd | 26 +++++++++--------
man/pvamodel-class.Rd | 6 +--
man/songsparrow.Rd | 2 -
21 files changed, 309 insertions(+), 147 deletions(-)
Title: MWA package for causal inference in spatiotemporal event data
Diff between mwa versions 0.2 dated 2014-05-03 and 0.3 dated 2014-05-19
Description: MWA grants insights into causal relationships in spatiotemporal event data.
Author: Sebastian Schutte and Karsten Donnay
Maintainer: Sebastian Schutte
DESCRIPTION | 8
MD5 | 12
R/mwa.R | 235 ++++++++-----
data/mwa_data.rda |binary
inst/java/WakeCounter.jar |binary
inst/javasrc/WakeCounter.java | 744 +++++++++++++++++++++---------------------
man/matchedwake.Rd | 2
7 files changed, 530 insertions(+), 471 deletions(-)
Title: R binder for the Yhat API
Diff between yhatr versions 0.8.1 dated 2014-03-13 and 0.9.0 dated 2014-05-19
Description: yhatr lets you deploy, maintain, and invoke models via the Yhat
REST API.
Author: Greg Lamp
Maintainer: Greg Lamp
yhatr-0.8.1/yhatr/man/yhatR-package.Rd |only
yhatr-0.9.0/yhatr/DESCRIPTION | 9 -
yhatr-0.9.0/yhatr/MD5 | 30 +++---
yhatr-0.9.0/yhatr/NAMESPACE | 2
yhatr-0.9.0/yhatr/NEWS | 7 +
yhatr-0.9.0/yhatr/R/yhatR.R | 132 ++++++++++++++++++++++++++-
yhatr-0.9.0/yhatr/man/check.image.size.Rd | 6 -
yhatr-0.9.0/yhatr/man/yhat.deploy.Rd | 12 +-
yhatr-0.9.0/yhatr/man/yhat.deploy.to.file.Rd | 10 +-
yhatr-0.9.0/yhatr/man/yhat.get.Rd | 9 +
yhatr-0.9.0/yhatr/man/yhat.ls.Rd |only
yhatr-0.9.0/yhatr/man/yhat.post.Rd | 11 +-
yhatr-0.9.0/yhatr/man/yhat.predict.Rd | 11 +-
yhatr-0.9.0/yhatr/man/yhat.predict_raw.Rd | 11 +-
yhatr-0.9.0/yhatr/man/yhat.scaffolding.Rd | 6 -
yhatr-0.9.0/yhatr/man/yhat.show_models.Rd | 7 -
yhatr-0.9.0/yhatr/man/yhat.spider.block.Rd |only
yhatr-0.9.0/yhatr/man/yhat.spider.func.Rd |only
18 files changed, 201 insertions(+), 62 deletions(-)
More information about rbitcoinchartsapi at CRAN
Permanent link
Title: tools to convert ODM files
Diff between ODMconverter versions 1.2 dated 2013-10-24 and 2.0 dated 2014-05-19
Description: Transformation of ODM files into R format, office format, CDA format and vice versa. CDISC ODM format is commonly used in clinical trials. Semantic annotation (such as UMLS, SNOMED or LOINC codes) are transformed accordingly.
Author: Martin Dugas
Maintainer: Martin Dugas
DESCRIPTION | 13 +++++++------
MD5 | 21 +++++++++++++--------
NAMESPACE | 5 ++---
R/CDA2ODM.R |only
R/ODM2CDA.R |only
R/ODM2office.R | 3 ++-
inst/extdata/CDA_letter_basic.xml |only
man/CDA2ODM.Rd |only
man/ODM2CDA.Rd |only
man/ODM2R.Rd | 3 ++-
man/ODM2office.Rd | 3 ++-
man/ODMconverter-package.Rd | 5 +++--
man/R2ODM.Rd | 3 ++-
man/office2ODM.Rd | 3 ++-
14 files changed, 35 insertions(+), 24 deletions(-)
Title: Hawkes process simulation and calibration toolkit
Diff between hawkes versions 0.0-3 dated 2014-03-31 and 0.0-4 dated 2014-05-19
Description: The package allows to simulate Hawkes process both in univariate and multivariate settings. It gives functions to compute different moments of the number of jumps of the process on a given interval, such as mean, variance or autocorrelation of process jumps on time intervals separated by a lag.
Author: Riadh Zaatour
Maintainer: Riadh Zaatour
DESCRIPTION | 15 ++++++++-------
MD5 | 14 +++++++-------
NAMESPACE | 2 +-
man/jumpAutocorrelation.Rd | 2 +-
man/jumpMean.Rd | 2 +-
man/jumpVariance.Rd | 2 +-
src/hawkes.cpp | 25 +++++++++++++++++--------
src/hawkes_utils.h | 9 +++++++++
8 files changed, 45 insertions(+), 26 deletions(-)
Title: Tools for the analysis of Gutenberg-Richter distributions of
earthquake magnitudes
Diff between GRTo versions 1.1 dated 2013-07-26 and 1.2 dated 2014-05-19
Description: This package offers functions for the comparison of Gutenberg-Richter
b-values. Several functions in GRTo are helpful for the assessment of the
quality of seismicity catalogs.
Author: Daniel Amorese, Paul A. Rydelek and Jean-Robert Grasso
Maintainer: Daniel C. Amorese
DESCRIPTION | 11 ++++++-----
MD5 | 16 ++++++++--------
NAMESPACE | 1 +
R/BBootComp.R | 2 +-
R/bvmed.R | 9 ++++-----
R/fmddisc.R | 1 -
man/GRTo-package.Rd | 7 +++++--
man/bvmed.Rd | 3 +++
man/fmddisc.Rd | 3 +++
9 files changed, 31 insertions(+), 22 deletions(-)
Title: an open-source R package for omics data integrative analysis in
terms of network, evolution and ontology
Diff between dnet versions 1.0.2 dated 2014-04-30 and 1.0.3 dated 2014-05-19
Description: The 'dnet' package is initiated to fill in the need of an open-source tool for high-throughput omics data in an integrative manner in terms of network, evolution and ontology. More specifically, dnet intends to analyse the biological network whose nodes/genes are associated with digitised information such as expression levels across samples. To help make sense of identified networks, enrichment analysis is also supported using a wide variety of pre-compiled ontologies and phylostratific gene age information in major organisms including human, mouse, rat, chicken, C.elegans, fruit fly, zebrafish and arabidopsis. Add-on functionalities are supports for semantic similarity calculation between ontology terms (and genes), and network affinity calculation using Random Walk with Restart; both can be done via high-performance parallel computing. In summary, dnet aims to deliver an eye-intuitive tool with rich visuals but less inputs.
Author: Hai Fang and Julian Gough
Maintainer: Hai Fang
DESCRIPTION | 27 ++--
MD5 | 72 ++++++----
NAMESPACE | 6
R/dCheckParallel.r |only
R/dDAGancestor.r |only
R/dDAGannotate.r | 10 +
R/dDAGgeneSim.r |only
R/dDAGinduce.r | 55 ++++----
R/dDAGlevel.r | 2
R/dDAGtermSim.r |only
R/dDAGtip.r | 14 +-
R/dEnricher.r | 58 ++++++--
R/dEnricherView.r | 5
R/dGSEA.r | 22 ++-
R/dGSEAview.r | 5
R/dGSEAwrite.r | 4
R/dNetPipeline.r | 4
R/dRDataLoader.r | 20 ++-
R/dRWR.r | 164 ++++++++++++++++++------
R/dRWRcontact.r |only
R/dRWRpipeline.r |only
R/visDAG.r | 2
inst/NEWS | 10 +
inst/staticdocs/CITATIONs.md | 2
inst/staticdocs/INSTALLATIONs.md | 4
inst/staticdocs/INSTALLATIONs_tmp.md | 53 ++++---
inst/staticdocs/README.md | 8 -
inst/staticdocs/demo/Hiratani.r | 45 ++++--
inst/staticdocs/demo/TCGA.r | 173 +++++++++++++------------
inst/staticdocs/demo/TCGA_pre.r | 233 ++++++++++++++++++++++++++++++++++-
inst/staticdocs/docs.r | 17 ++
man/dCheckParallel.Rd |only
man/dDAGancestor.Rd |only
man/dDAGannotate.Rd | 10 -
man/dDAGgeneSim.Rd |only
man/dDAGlevel.Rd | 2
man/dDAGtermSim.Rd |only
man/dNetPipeline.Rd | 8 -
man/dRDataLoader.Rd | 34 ++---
man/dRWR.Rd | 67 ++++++----
man/dRWRcontact.Rd |only
man/dRWRpipeline.Rd |only
man/visDAG.Rd | 5
43 files changed, 811 insertions(+), 330 deletions(-)
Title: A swiss army knife for population genetic & genomic analysis
Diff between PopGenome versions 2.0.6 dated 2014-04-16 and 2.0.7 dated 2014-05-19
Description: PopGenome is an R-package for Population Genetic & Genomic Analysis
Author: Bastian Pfeifer, Ulrich Wittelsbuerger
Maintainer: Bastian Pfeifer
DESCRIPTION | 6
MD5 | 32 +--
NEWS | 15 +
R/concatenate.R | 3
R/fitting_gff.R | 5
R/get.codons.R | 60 +++++-
R/get_data.R | 36 +++-
R/parse_gff.R | 26 ++-
R/set.synnonsyn.R | 147 ++++++++++++++---
inst/doc/An_introduction_to_the_PopGenome_package.Rnw | 1
inst/doc/An_introduction_to_the_PopGenome_package.pdf |binary
inst/doc/Integration_of_new_Methods.pdf |binary
man/get.codons-methods.Rd | 34 +--
man/set.synnonsyn-methods.Rd | 6
man/sweeps.stats-methods.Rd | 2
src/fittingGFFC++.c | 1
vignettes/An_introduction_to_the_PopGenome_package.Rnw | 1
17 files changed, 277 insertions(+), 98 deletions(-)
Title: Analysis of Oceanographic data
Diff between oce versions 0.9-13 dated 2014-01-29 and 0.9-14 dated 2014-05-19
Description: Supports the analysis of Oceanographic data,
including ADP measurements, CTD measurements, sectional
data, sea-level time series, coastline files, etc.
Provides functions for calculating seawater properties
such as potential temperature and density, as well as
derived properties such as buoyancy frequency and
dynamic height.
Author: Dan Kelley
Maintainer: Dan Kelley
oce-0.9-13/oce/README |only
oce-0.9-13/oce/data/RRprofile.rda |only
oce-0.9-13/oce/data/a03.rda |only
oce-0.9-13/oce/data/airHalifax.rda |only
oce-0.9-13/oce/data/coastlineHalifax.rda |only
oce-0.9-13/oce/data/coastlineMaritimes.rda |only
oce-0.9-13/oce/data/coastlineSLE.rda |only
oce-0.9-13/oce/data/datalist |only
oce-0.9-13/oce/data/drag.rda |only
oce-0.9-13/oce/data/endeavour.rda |only
oce-0.9-13/oce/data/geosecs235.rda |only
oce-0.9-13/oce/data/giss.rda |only
oce-0.9-13/oce/data/levitus.rda |only
oce-0.9-13/oce/data/munk.rda |only
oce-0.9-13/oce/data/oceans.rda |only
oce-0.9-13/oce/data/papa.rda |only
oce-0.9-13/oce/data/redfieldNC.rda |only
oce-0.9-13/oce/data/redfieldNP.rda |only
oce-0.9-13/oce/data/redfieldPlankton.rda |only
oce-0.9-13/oce/data/riley.rda |only
oce-0.9-13/oce/data/schmitt.rda |only
oce-0.9-13/oce/data/sealevelHalifax.rda |only
oce-0.9-13/oce/data/topo2.rda |only
oce-0.9-13/oce/data/topoMaritimes.rda |only
oce-0.9-13/oce/data/turbulence.rda |only
oce-0.9-13/oce/data/wilson.rda |only
oce-0.9-13/oce/inst/extdata/h275a96.dat |only
oce-0.9-13/oce/man/RRprofile.Rd |only
oce-0.9-13/oce/man/a03.Rd |only
oce-0.9-13/oce/man/airHalifax.Rd |only
oce-0.9-13/oce/man/coastlineHalifax.Rd |only
oce-0.9-13/oce/man/coastlineMaritimes.Rd |only
oce-0.9-13/oce/man/coastlineSLE.Rd |only
oce-0.9-13/oce/man/drag.Rd |only
oce-0.9-13/oce/man/endeavour.Rd |only
oce-0.9-13/oce/man/geosecs235.Rd |only
oce-0.9-13/oce/man/giss.Rd |only
oce-0.9-13/oce/man/levitus.Rd |only
oce-0.9-13/oce/man/magneticDeclination.Rd |only
oce-0.9-13/oce/man/munk.Rd |only
oce-0.9-13/oce/man/oceBisect.Rd |only
oce-0.9-13/oce/man/oceans.Rd |only
oce-0.9-13/oce/man/papa.Rd |only
oce-0.9-13/oce/man/redfieldNC.Rd |only
oce-0.9-13/oce/man/redfieldNP.Rd |only
oce-0.9-13/oce/man/redfieldPlankton.Rd |only
oce-0.9-13/oce/man/riley.Rd |only
oce-0.9-13/oce/man/schmitt.Rd |only
oce-0.9-13/oce/man/sealevelHalifax.Rd |only
oce-0.9-13/oce/man/topo2.Rd |only
oce-0.9-13/oce/man/topoMaritimes.Rd |only
oce-0.9-13/oce/man/turbulence.Rd |only
oce-0.9-13/oce/man/wilson.Rd |only
oce-0.9-13/oce/tests/h275a96.dat |only
oce-0.9-13/oce/tests/pt.dat |only
oce-0.9-13/oce/tests/t_equilib.dat |only
oce-0.9-13/oce/tests/tide3.dat |only
oce-0.9-14/oce/DESCRIPTION | 25
oce-0.9-14/oce/MD5 | 596 ++---
oce-0.9-14/oce/NAMESPACE | 115
oce-0.9-14/oce/NEWS | 59
oce-0.9-14/oce/R/AllClass.R | 31
oce-0.9-14/oce/R/accessors.R | 2
oce-0.9-14/oce/R/adp.R | 545 ++--
oce-0.9-14/oce/R/adp.nortek.R | 22
oce-0.9-14/oce/R/adp.rdi.R | 14
oce-0.9-14/oce/R/adp.sontek.R | 10
oce-0.9-14/oce/R/adv.R | 281 +-
oce-0.9-14/oce/R/adv.nortek.R | 12
oce-0.9-14/oce/R/adv.sontek.R | 21
oce-0.9-14/oce/R/cm.R | 155 -
oce-0.9-14/oce/R/coastline.R | 347 +-
oce-0.9-14/oce/R/colors.R |only
oce-0.9-14/oce/R/ctd.R | 1900 ++++++++++------
oce-0.9-14/oce/R/drifter.R | 130 -
oce-0.9-14/oce/R/echosounder.R | 176 +
oce-0.9-14/oce/R/gps.R |only
oce-0.9-14/oce/R/imagep.R | 620 +++--
oce-0.9-14/oce/R/landsat.R |only
oce-0.9-14/oce/R/lisst.R | 107
oce-0.9-14/oce/R/lobo.R | 45
oce-0.9-14/oce/R/map.R | 503 +++-
oce-0.9-14/oce/R/met.R | 51
oce-0.9-14/oce/R/misc.R | 831 +++++-
oce-0.9-14/oce/R/moon.R | 32
oce-0.9-14/oce/R/observatory.R |only
oce-0.9-14/oce/R/oce.R | 747 ++----
oce-0.9-14/oce/R/run.R |only
oce-0.9-14/oce/R/sealevel.R | 81
oce-0.9-14/oce/R/section.R | 735 ++++--
oce-0.9-14/oce/R/spectral.R | 8
oce-0.9-14/oce/R/sun.R | 23
oce-0.9-14/oce/R/sw.R | 62
oce-0.9-14/oce/R/tdr.R | 102
oce-0.9-14/oce/R/tidem.R | 169 -
oce-0.9-14/oce/R/topo.R | 169 -
oce-0.9-14/oce/R/windrose.R | 46
oce-0.9-14/oce/R/zzz.R | 3
oce-0.9-14/oce/build/vignette.rds |binary
oce-0.9-14/oce/data/adp.rda |binary
oce-0.9-14/oce/data/adv.rda |binary
oce-0.9-14/oce/data/cm.rda |binary
oce-0.9-14/oce/data/coastlineWorld.rda |binary
oce-0.9-14/oce/data/ctd.rda |binary
oce-0.9-14/oce/data/ctdRaw.rda |binary
oce-0.9-14/oce/data/drifter.rda |binary
oce-0.9-14/oce/data/echosounder.rda |binary
oce-0.9-14/oce/data/lisst.rda |binary
oce-0.9-14/oce/data/lobo.rda |binary
oce-0.9-14/oce/data/met.rda |binary
oce-0.9-14/oce/data/nao.rda |only
oce-0.9-14/oce/data/sealevel.rda |only
oce-0.9-14/oce/data/sealevelTuktoyaktuk.rda |binary
oce-0.9-14/oce/data/section.rda |binary
oce-0.9-14/oce/data/soi.rda |binary
oce-0.9-14/oce/data/tdr.rda |binary
oce-0.9-14/oce/data/tidedata.rda |binary
oce-0.9-14/oce/data/topoWorld.rda |binary
oce-0.9-14/oce/data/wind.rda |binary
oce-0.9-14/oce/demo/00Index | 8
oce-0.9-14/oce/demo/TS.R | 4
oce-0.9-14/oce/demo/coastline.R | 8
oce-0.9-14/oce/demo/sealevel.R | 8
oce-0.9-14/oce/demo/section.R | 7
oce-0.9-14/oce/demo/tide.R | 13
oce-0.9-14/oce/inst/doc/oce.R | 108
oce-0.9-14/oce/inst/doc/oce.Rnw | 101
oce-0.9-14/oce/inst/doc/oce.pdf |binary
oce-0.9-14/oce/inst/extdata/CTD_BCD2010666_01_01_DN.ODF |only
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oce-0.9-14/oce/inst/extdata/d201211_0011.cnv |only
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oce-0.9-14/oce/man/accessors.Rd | 2
oce-0.9-14/oce/man/addColumn.Rd | 2
oce-0.9-14/oce/man/adp.Rd | 13
oce-0.9-14/oce/man/adv.Rd | 8
oce-0.9-14/oce/man/angleRemap.Rd | 2
oce-0.9-14/oce/man/applyMagneticDeclination.Rd | 4
oce-0.9-14/oce/man/as.coastline.Rd | 25
oce-0.9-14/oce/man/as.ctd.Rd | 9
oce-0.9-14/oce/man/as.gps.Rd |only
oce-0.9-14/oce/man/as.lisst.Rd | 4
oce-0.9-14/oce/man/as.sealevel.Rd | 6
oce-0.9-14/oce/man/as.topo.Rd | 19
oce-0.9-14/oce/man/beamToXyz.Rd | 2
oce-0.9-14/oce/man/beamToXyzAdp.Rd | 2
oce-0.9-14/oce/man/beamUnspreadAdp.Rd | 8
oce-0.9-14/oce/man/binApply.Rd |only
oce-0.9-14/oce/man/binMean.Rd |only
oce-0.9-14/oce/man/binmapAdp.Rd | 2
oce-0.9-14/oce/man/cm-class.Rd | 2
oce-0.9-14/oce/man/cm.Rd | 7
oce-0.9-14/oce/man/coastline-class.Rd | 16
oce-0.9-14/oce/man/coastlineBest.Rd |only
oce-0.9-14/oce/man/coastlineWorld.Rd | 49
oce-0.9-14/oce/man/colormap.Rd |only
oce-0.9-14/oce/man/ctd-class.Rd | 89
oce-0.9-14/oce/man/ctd.Rd | 16
oce-0.9-14/oce/man/ctdAddColumn.Rd | 2
oce-0.9-14/oce/man/ctdDecimate.Rd | 64
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oce-0.9-14/oce/man/ctdRaw.Rd | 18
oce-0.9-14/oce/man/ctdTrim.Rd | 4
oce-0.9-14/oce/man/decimate.Rd | 1
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oce-0.9-14/oce/man/detrend.Rd | 19
oce-0.9-14/oce/man/drawIsopycnals.Rd | 20
oce-0.9-14/oce/man/drawPalette.Rd | 118
oce-0.9-14/oce/man/drifter-class.Rd | 4
oce-0.9-14/oce/man/drifter.Rd | 6
oce-0.9-14/oce/man/echosounder-class.Rd | 15
oce-0.9-14/oce/man/echosounder.Rd | 6
oce-0.9-14/oce/man/eclipticalToEquatorial.Rd | 2
oce-0.9-14/oce/man/enuToOtherAdp.Rd | 2
oce-0.9-14/oce/man/enuToOtherAdv.Rd | 2
oce-0.9-14/oce/man/equatorialToLocalHorizontal.Rd | 6
oce-0.9-14/oce/man/errorbars.Rd | 2
oce-0.9-14/oce/man/extract.Rd | 6
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oce-0.9-14/oce/man/formatCI.Rd | 4
oce-0.9-14/oce/man/formatPosition.Rd | 11
oce-0.9-14/oce/man/geodDist.Rd | 45
oce-0.9-14/oce/man/geodGc.Rd | 14
oce-0.9-14/oce/man/geodXy.Rd | 10
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oce-0.9-14/oce/man/head.Rd | 27
oce-0.9-14/oce/man/header.Rd | 1
oce-0.9-14/oce/man/imagep.Rd | 85
oce-0.9-14/oce/man/interpBarnes.Rd | 72
oce-0.9-14/oce/man/is.beam.Rd | 2
oce-0.9-14/oce/man/julianCenturyAnomaly.Rd | 3
oce-0.9-14/oce/man/landsat-class.Rd |only
oce-0.9-14/oce/man/landsatTrim.Rd |only
oce-0.9-14/oce/man/lisst.Rd | 7
oce-0.9-14/oce/man/lobo.Rd | 26
oce-0.9-14/oce/man/magneticField.Rd |only
oce-0.9-14/oce/man/makeFilter.Rd | 224 -
oce-0.9-14/oce/man/makeSection.Rd | 6
oce-0.9-14/oce/man/map2lonlat.Rd | 6
oce-0.9-14/oce/man/mapContour.Rd | 9
oce-0.9-14/oce/man/mapImage.Rd | 54
oce-0.9-14/oce/man/mapLines.Rd | 8
oce-0.9-14/oce/man/mapLongitudeLatitudeXY.Rd |only
oce-0.9-14/oce/man/mapMeridians.Rd | 13
oce-0.9-14/oce/man/mapPlot.Rd | 76
oce-0.9-14/oce/man/mapPoints.Rd | 13
oce-0.9-14/oce/man/mapPolygon.Rd | 21
oce-0.9-14/oce/man/mapScalebar.Rd |only
oce-0.9-14/oce/man/mapText.Rd | 6
oce-0.9-14/oce/man/mapZones.Rd | 14
oce-0.9-14/oce/man/matchBytes.Rd | 2
oce-0.9-14/oce/man/met.Rd | 12
oce-0.9-14/oce/man/moonAngle.Rd | 16
oce-0.9-14/oce/man/nao.Rd |only
oce-0.9-14/oce/man/numberAsHMS.Rd |only
oce-0.9-14/oce/man/numberAsPOSIXct.Rd | 23
oce-0.9-14/oce/man/oce.as.raw.Rd | 2
oce-0.9-14/oce/man/oce.plot.ts.Rd | 33
oce-0.9-14/oce/man/oceApprox.Rd | 111
oce-0.9-14/oce/man/oceColors.Rd | 8
oce-0.9-14/oce/man/oceContour.Rd | 15
oce-0.9-14/oce/man/oceDebug.Rd | 4
oce-0.9-14/oce/man/oceEdit.Rd | 4
oce-0.9-14/oce/man/ocePmatch.Rd | 2
oce-0.9-14/oce/man/plot.adp.Rd | 41
oce-0.9-14/oce/man/plot.adv.Rd | 2
oce-0.9-14/oce/man/plot.cm.Rd | 2
oce-0.9-14/oce/man/plot.coastline.Rd | 35
oce-0.9-14/oce/man/plot.ctd.Rd | 68
oce-0.9-14/oce/man/plot.drifter.Rd | 47
oce-0.9-14/oce/man/plot.echosounder.Rd | 3
oce-0.9-14/oce/man/plot.gps.Rd |only
oce-0.9-14/oce/man/plot.landsat.Rd |only
oce-0.9-14/oce/man/plot.lobo.Rd | 4
oce-0.9-14/oce/man/plot.met.Rd | 2
oce-0.9-14/oce/man/plot.sealevel.Rd | 12
oce-0.9-14/oce/man/plot.section.Rd | 75
oce-0.9-14/oce/man/plot.tdr.Rd | 5
oce-0.9-14/oce/man/plot.tidem.Rd | 4
oce-0.9-14/oce/man/plot.topo.Rd | 10
oce-0.9-14/oce/man/plotInset.Rd | 12
oce-0.9-14/oce/man/plotProfile.Rd | 23
oce-0.9-14/oce/man/plotSticks.Rd | 17
oce-0.9-14/oce/man/plotTS.Rd | 38
oce-0.9-14/oce/man/plotTaylor.Rd | 10
oce-0.9-14/oce/man/predict.tidem.Rd | 19
oce-0.9-14/oce/man/prettyPosition.Rd | 2
oce-0.9-14/oce/man/processingLog.Rd | 1
oce-0.9-14/oce/man/rangeExtended.Rd |only
oce-0.9-14/oce/man/read.adp.Rd | 22
oce-0.9-14/oce/man/read.adv.Rd | 14
oce-0.9-14/oce/man/read.cm.Rd | 6
oce-0.9-14/oce/man/read.coastline.Rd | 5
oce-0.9-14/oce/man/read.ctd.Rd | 163 -
oce-0.9-14/oce/man/read.echosounder.Rd | 6
oce-0.9-14/oce/man/read.gps.Rd |only
oce-0.9-14/oce/man/read.landsat.Rd |only
oce-0.9-14/oce/man/read.lisst.Rd | 4
oce-0.9-14/oce/man/read.observatory.Rd |only
oce-0.9-14/oce/man/read.sealevel.Rd | 2
oce-0.9-14/oce/man/read.section.Rd | 17
oce-0.9-14/oce/man/read.tdr.Rd | 2
oce-0.9-14/oce/man/read.topo.Rd | 6
oce-0.9-14/oce/man/rescale.Rd | 27
oce-0.9-14/oce/man/resizableLabel.Rd | 19
oce-0.9-14/oce/man/retime.Rd | 4
oce-0.9-14/oce/man/runlm.Rd |only
oce-0.9-14/oce/man/sealevel-class.Rd | 9
oce-0.9-14/oce/man/sealevel.Rd |only
oce-0.9-14/oce/man/sealevelTuktoyaktuk.Rd | 30
oce-0.9-14/oce/man/secondsToCtime.Rd | 2
oce-0.9-14/oce/man/section-class.Rd | 39
oce-0.9-14/oce/man/section.Rd | 66
oce-0.9-14/oce/man/sectionGrid.Rd | 22
oce-0.9-14/oce/man/sectionSmooth.Rd | 18
oce-0.9-14/oce/man/sectionSort.Rd | 9
oce-0.9-14/oce/man/soi.Rd | 21
oce-0.9-14/oce/man/standardDepths.Rd |only
oce-0.9-14/oce/man/subset.adp.Rd |only
oce-0.9-14/oce/man/subset.adv.Rd |only
oce-0.9-14/oce/man/subset.cm.Rd |only
oce-0.9-14/oce/man/subset.coastline.Rd |only
oce-0.9-14/oce/man/subset.ctd.Rd |only
oce-0.9-14/oce/man/subset.echosounder.Rd |only
oce-0.9-14/oce/man/subset.lisst.Rd |only
oce-0.9-14/oce/man/subset.oce.Rd | 34
oce-0.9-14/oce/man/subset.sealevel.Rd |only
oce-0.9-14/oce/man/subset.section.Rd |only
oce-0.9-14/oce/man/subset.tdr.Rd |only
oce-0.9-14/oce/man/subset.topo.Rd |only
oce-0.9-14/oce/man/summary.adp.Rd | 6
oce-0.9-14/oce/man/summary.adv.Rd | 6
oce-0.9-14/oce/man/summary.cm.Rd | 4
oce-0.9-14/oce/man/summary.coastline.Rd | 6
oce-0.9-14/oce/man/summary.ctd.Rd | 16
oce-0.9-14/oce/man/summary.drifter.Rd | 6
oce-0.9-14/oce/man/summary.echosounder.Rd | 9
oce-0.9-14/oce/man/summary.gps.Rd |only
oce-0.9-14/oce/man/summary.landsat.Rd |only
oce-0.9-14/oce/man/summary.lisst.Rd | 9
oce-0.9-14/oce/man/summary.lobo.Rd | 9
oce-0.9-14/oce/man/summary.met.Rd | 9
oce-0.9-14/oce/man/summary.sealevel.Rd | 10
oce-0.9-14/oce/man/summary.section.Rd | 6
oce-0.9-14/oce/man/summary.tdr.Rd | 9
oce-0.9-14/oce/man/summary.tidem.Rd | 13
oce-0.9-14/oce/man/summary.topo.Rd | 9
oce-0.9-14/oce/man/summary.windrose.Rd | 7
oce-0.9-14/oce/man/sunAngle.Rd | 20
oce-0.9-14/oce/man/swAbsoluteSalinity.Rd | 2
oce-0.9-14/oce/man/swConservativeTemperature.Rd | 2
oce-0.9-14/oce/man/swDynamicHeight.Rd | 17
oce-0.9-14/oce/man/swPressure.Rd |only
oce-0.9-14/oce/man/swRho.Rd | 5
oce-0.9-14/oce/man/swRrho.Rd |only
oce-0.9-14/oce/man/swSCTp.Rd | 2
oce-0.9-14/oce/man/swTheta.Rd | 10
oce-0.9-14/oce/man/tdr.Rd | 12
oce-0.9-14/oce/man/tidedata.Rd | 21
oce-0.9-14/oce/man/toEnuAdp.Rd | 2
oce-0.9-14/oce/man/toEnuAdv.Rd | 2
oce-0.9-14/oce/man/topoInterpolate.Rd | 18
oce-0.9-14/oce/man/topoWorld.Rd | 25
oce-0.9-14/oce/man/undriftTime.Rd | 2
oce-0.9-14/oce/man/ungrid.Rd |only
oce-0.9-14/oce/man/webtide.Rd | 79
oce-0.9-14/oce/man/wind.Rd | 2
oce-0.9-14/oce/man/window.oce.Rd | 7
oce-0.9-14/oce/man/xyzToEnuAdp.Rd | 2
oce-0.9-14/oce/man/xyzToEnuAdv.Rd | 2
oce-0.9-14/oce/po |only
oce-0.9-14/oce/src/bin.cpp |only
oce-0.9-14/oce/src/geod.c | 8
oce-0.9-14/oce/src/gradient.c | 2
oce-0.9-14/oce/src/hex2int.c |only
oce-0.9-14/oce/src/interp_barnes.c | 215 +
oce-0.9-14/oce/src/magdec.f | 15
oce-0.9-14/oce/src/map.c |only
oce-0.9-14/oce/src/oce_approx.c | 313 ++
oce-0.9-14/oce/src/oce_convolve.c | 2
oce-0.9-14/oce/src/run.c |only
oce-0.9-14/oce/src/teos.c | 19
oce-0.9-14/oce/src/topo_interpolate.c | 1
oce-0.9-14/oce/tests/astronomical.R | 9
oce-0.9-14/oce/tests/colormap.R |only
oce-0.9-14/oce/tests/eos.R | 2
oce-0.9-14/oce/tests/geod.R | 7
oce-0.9-14/oce/tests/misc.R | 7
oce-0.9-14/oce/tests/readCtd.R |only
oce-0.9-14/oce/tests/t_equilib.dat.gz |only
oce-0.9-14/oce/tests/tide.R | 4
oce-0.9-14/oce/tests/tide3.dat.gz |only
oce-0.9-14/oce/vignettes/oce.Rnw | 105
355 files changed, 7737 insertions(+), 4922 deletions(-)
Title: A package for Graphical Markov Models
Diff between ggm versions 2.0 dated 2014-03-21 and 2.1 dated 2014-05-19
Description: Functions for analyzing and fitting Graphical Markov models
Author: Giovanni M. Marchetti, Mathias Drton, Kayvan Sadeghi
Maintainer: Giovanni M. Marchetti
DESCRIPTION | 9
MD5 | 24
NAMESPACE | 1
R/functions.R | 3
R/kayvan.R | 3012 +++++++++++++++++++++++++++----------------------------
man/AG.Rd | 178 +--
man/MAG.Rd | 200 +--
man/MRG.Rd | 6
man/MSG.Rd | 208 +--
man/RG.Rd | 174 +--
man/SG.Rd | 171 +--
man/ggm.Rd | 10
man/isAcyclic.Rd | 3
13 files changed, 2012 insertions(+), 1987 deletions(-)
Title: Analyzes clickstreams based on Markov chains
Diff between clickstream versions 1.1.0 dated 2014-03-28 and 1.1.1 dated 2014-05-19
Description: This package allows modeling clickstreams with Markov chains. It supports to model clickstreams as zero-order, first-order or higher-order Markov chains.
Author: Michael Scholz
Maintainer: Michael Scholz
DESCRIPTION | 8 -
MD5 | 55 ++++---
NAMESPACE | 2
NEWS | 7 +
R/Clickstream.r | 259 ++++++++++++++++++++++++++++++++++++-
R/Fitting.r | 146 +++++++++++++++-----
R/MarkovChain.r | 206 +++++++++++++++++++++++++++++
R/Pattern.r | 27 +++
R/clickstream-package.R |only
man/MarkovChain-class.Rd | 57 +-------
man/Pattern-class.Rd | 49 ++-----
man/absorbingStates-methods.Rd | 22 ++-
man/clickstream-package.Rd | 45 +++---
man/clusterClickstreams.Rd | 84 +++++-------
man/fitMarkovChain.Rd | 76 ++++++----
man/predict-methods.Rd | 73 ++++++----
man/predict.ClickstreamClusters.Rd | 54 +++----
man/print.ClickstreamClusters.Rd | 39 ++---
man/print.Clickstreams.Rd | 35 ++---
man/print.MarkovChainSummary.Rd | 35 ++---
man/randomClicks-methods.Rd | 52 ++++---
man/randomClickstreams.Rd | 59 +++-----
man/readClickstreams.Rd | 55 ++++---
man/states-methods.Rd | 22 ++-
man/summary-methods.Rd | 44 ++++--
man/summary.ClickstreamClusters.Rd | 41 ++---
man/summary.Clickstreams.Rd | 37 ++---
man/transientStates-methods.Rd | 23 ++-
man/writeClickstreams.Rd | 59 ++++----
29 files changed, 1105 insertions(+), 566 deletions(-)
Title: Bayesian analysis of contingency tables
Diff between conting versions 1.1 dated 2013-08-13 and 1.2 dated 2014-05-19
Description: Bayesian analysis of complete and incomplete contingency tables.
Author: Antony M. Overstall
Maintainer: Antony M. Overstall
DESCRIPTION | 11 +++++----
MD5 | 54 ++++++++++++++++++++++++-------------------------
NAMESPACE | 4 +++
data/AOH.rda |binary
data/ScotPWID.rda |binary
data/heart.rda |binary
data/spina.rda |binary
man/AOH.Rd | 4 +--
man/RJ_update.Rd | 4 +--
man/ScotPWID.Rd | 10 ++++-----
man/bayespval.Rd | 12 +++++-----
man/bcct.Rd | 25 ++++++++++------------
man/bcct.fit.Rd | 9 +++-----
man/beta_mode.Rd | 18 ++++++++--------
man/bict.Rd | 30 ++++++++++++---------------
man/bict.fit.Rd | 10 ++++-----
man/conting-package.Rd | 8 +++----
man/find_cens.Rd | 8 +++----
man/heart.Rd | 9 +++-----
man/index2model.Rd | 2 -
man/inter_probs.Rd | 2 -
man/inter_stats.Rd | 2 -
man/iwls_mh.Rd | 4 +--
man/mod_probs.Rd | 2 -
man/spina.Rd | 4 +--
man/sub_model.Rd | 14 ++++++------
man/summary.bcct.Rd | 14 ++++++------
man/total_pop.Rd | 2 -
28 files changed, 131 insertions(+), 131 deletions(-)
Title: Body Mass Estimation Equations for Vertebrates
Diff between MASSTIMATE versions 1.1 dated 2013-11-13 and 1.2 dated 2014-05-19
Description: Estimation equations are from a variety of sources but are, in general, based on regressions between skeletal measurements (e.g., femoral circumference) and body mass in living taxa.
Author: Nicolas E. Campione
Maintainer: Nicolas E. Campione
DESCRIPTION | 8 +++----
MD5 | 50 +++++++++++++++++++++++++---------------------
R/AHR1985.R | 6 ++---
R/CF2004.R | 4 +--
R/CM1992.R | 4 +--
R/MCF2004.R | 4 +--
R/MR.R | 22 ++++++++++----------
R/QE.R | 22 ++++++++++----------
R/bipeds.R |only
R/cQE.R | 24 +++++++++++-----------
R/ppe.R | 12 ++++++++---
R/quadrupeds.R |only
R/see.R |only
data/dinosbip.csv.gz |binary
data/dinosbip.rda |binary
man/AHR1985.Rd | 12 ++++++-----
man/CF2004.Rd | 7 +++---
man/CM1992.Rd | 7 +++---
man/MASSTIMATE-package.Rd | 6 ++---
man/MCF2004.Rd | 14 +++++++-----
man/MR.Rd | 17 ++++++++-------
man/QE.Rd | 17 ++++++++-------
man/bipeds.Rd |only
man/cQE.Rd | 29 ++++++++++++++------------
man/dinos.Rd | 2 -
man/dinosbip.Rd | 6 ++---
man/ppe.Rd | 20 ++++++++++--------
man/quadrupeds.Rd |only
man/see.Rd |only
29 files changed, 159 insertions(+), 134 deletions(-)
Title: Hidden Markov models with discrete non-parametric observation
distributions.
Diff between hmm.discnp versions 0.2-1 dated 2014-01-31 and 0.2-2 dated 2014-05-19
Description: Fits hidden Markov models with discrete non-parametric
observation distributions to data sets. Simulates data
from such models. Finds most probable underlying hidden
states, the most probable sequences of such states, and the
log likelihood of a collection of observations given the
parameters of the model.
Author: Rolf Turner
Maintainer: Rolf Turner
hmm.discnp-0.2-1/hmm.discnp/R/mat2list.R |only
hmm.discnp-0.2-2/hmm.discnp/ChangeLog | 34 ++++++++++++++
hmm.discnp-0.2-2/hmm.discnp/DESCRIPTION | 9 ++-
hmm.discnp-0.2-2/hmm.discnp/MD5 | 40 +++++++++--------
hmm.discnp-0.2-2/hmm.discnp/R/charList.R |only
hmm.discnp-0.2-2/hmm.discnp/R/check.yval.R | 27 ++++++-----
hmm.discnp-0.2-2/hmm.discnp/R/ffun.R | 23 ++++++---
hmm.discnp-0.2-2/hmm.discnp/R/fitted.hmm.discnp.R | 5 +-
hmm.discnp-0.2-2/hmm.discnp/R/hmm.R | 18 +++++--
hmm.discnp-0.2-2/hmm.discnp/R/logLikHmm.R | 4 -
hmm.discnp-0.2-2/hmm.discnp/R/mps.R | 4 -
hmm.discnp-0.2-2/hmm.discnp/R/pr.R | 4 -
hmm.discnp-0.2-2/hmm.discnp/R/revise.rho.R | 4 +
hmm.discnp-0.2-2/hmm.discnp/R/sp.R | 10 +---
hmm.discnp-0.2-2/hmm.discnp/R/viterbi.R | 4 -
hmm.discnp-0.2-2/hmm.discnp/data |only
hmm.discnp-0.2-2/hmm.discnp/man/colifCount.Rd |only
hmm.discnp-0.2-2/hmm.discnp/man/fitted.hmm.discnp.Rd | 10 +++-
hmm.discnp-0.2-2/hmm.discnp/man/hmm.Rd | 18 +++++--
hmm.discnp-0.2-2/hmm.discnp/man/hmm.discnp-internal.Rd | 6 +-
hmm.discnp-0.2-2/hmm.discnp/man/lesionCount.Rd |only
hmm.discnp-0.2-2/hmm.discnp/man/logLikHmm.Rd | 12 +++--
hmm.discnp-0.2-2/hmm.discnp/man/mps.Rd | 15 ++++--
23 files changed, 165 insertions(+), 82 deletions(-)
More information about s2dverification at CRAN
Permanent link
Title: Utility sparse matrix functions for Quantitative Language
Comparison
Diff between qlcMatrix versions 0.9.1 dated 2014-05-17 and 0.9.2 dated 2014-05-19
Description: This package contains various functions that extend the functionality of the Matrix package for using sparse matrices. Some of the functions are very general, while other are highly specific for special data format as used for quantitative language comparison (QLC).
Author: Michael Cysouw
Maintainer: Michael Cysouw
DESCRIPTION | 8 ++++----
MD5 | 11 ++++++-----
README.md |only
man/qlcMatrix-package.Rd | 4 ++--
man/rowMax.Rd | 15 +++++++++++++--
man/sim.nominal.Rd | 6 +++---
man/ttMatrix.Rd | 2 +-
7 files changed, 29 insertions(+), 17 deletions(-)
Title: Evaluation of diversity in nucleotide libraries
Diff between peptider versions 0.1.3 dated 2014-05-07 and 0.1.4 dated 2014-05-19
Description: Functions for evaluating diversity in peptide libraries, including
NNN, NNB, NNK/S, and trimer schemes. This includes expected coverage,
relative efficiency, and functional diversity of the library.
Author: Heike Hofmann, Eric Hare, ggobi Foundation
Maintainer: Eric Hare
DESCRIPTION | 8 +++----
MD5 | 46 ++++++++++++++++++++++-----------------------
NAMESPACE | 2 -
R/tabulate.r | 11 ++++------
man/BLOSUM80.Rd | 2 -
man/codons.Rd | 2 -
man/coverage.Rd | 2 -
man/detect.Rd | 2 -
man/diversity.Rd | 2 -
man/efficiency.Rd | 2 -
man/encodingReduce.Rd | 2 -
man/generateCustom.Rd | 2 -
man/generateCustomLib.Rd | 2 -
man/generateCustomProbs.Rd | 2 -
man/getChoices.Rd | 2 -
man/getCounts.Rd | 2 -
man/getNeighbors.Rd | 2 -
man/getNofNeighbors.Rd | 2 -
man/libBuild.Rd | 2 -
man/libscheme.Rd | 2 -
man/makowski.Rd | 2 -
man/ppeptide.Rd | 2 -
man/scheme.Rd | 2 -
man/schemes.Rd | 2 -
24 files changed, 53 insertions(+), 54 deletions(-)