Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-06-28 2.1.5
2011-09-02 2.1.2
2006-11-29 2.1.1
Title: The Stepwise Response Refinement Screener (SRRS)
Diff between SRRS versions 0.1 dated 2013-08-05 and 0.1.1 dated 2014-05-26
Description: This package implements the SRRS method introduced in Phoa (2013) into a graphical user interface (GUI) R program.
Author: Frederick Kin Hing Phoa and Shu-Ching Lin
Maintainer: Frederick Kin Hing Phoa
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
NAMESPACE | 1 +
R/SRRS.R | 3 ---
4 files changed, 8 insertions(+), 10 deletions(-)
Title: R Interface to NetCDF Datasets
Diff between RNetCDF versions 1.6.1-2 dated 2012-07-19 and 1.6.2-2 dated 2014-05-26
Description: This package provides an interface to Unidata's NetCDF
library functions (version 3) and furthermore access to
Unidata's UDUNITS calendar conversions. The routines and the
documentation follow the NetCDF and UDUNITS C interface, so the
corresponding manuals can be consulted for more detailed
information.
Author: Pavel Michna
Maintainer: Pavel Michna
RNetCDF-1.6.1-2/RNetCDF/LICENSE |only
RNetCDF-1.6.2-2/RNetCDF/DESCRIPTION | 9
RNetCDF-1.6.2-2/RNetCDF/INSTALL | 4
RNetCDF-1.6.2-2/RNetCDF/LICENSE.note |only
RNetCDF-1.6.2-2/RNetCDF/MD5 | 16
RNetCDF-1.6.2-2/RNetCDF/R/RNetCDF.R | 4
RNetCDF-1.6.2-2/RNetCDF/configure | 3204 +++++++++++----------------
RNetCDF-1.6.2-2/RNetCDF/configure.ac | 2
RNetCDF-1.6.2-2/RNetCDF/src/RNetCDF.c | 9
RNetCDF-1.6.2-2/RNetCDF/tests/RNetCDF-test.R | 4
10 files changed, 1365 insertions(+), 1887 deletions(-)
Title: Programming with Big Data --- MPI Profiling Tools
Diff between pbdPROF versions 0.2-2 dated 2014-03-11 and 0.2-3 dated 2014-05-26
Description: MPI profiling tools.
Author: Wei-Chen Chen [aut, cre],
Drew Schmidt [aut],
Gaurav Sehrawat [aut],
Pragneshkumar Patel [aut],
George Ostrouchov [aut]
Maintainer: Wei-Chen Chen
ChangeLog | 6 +
DESCRIPTION | 11 +-
INSTALL | 107 ++++++++++----------------
MD5 | 28 +++----
R/get_winmpi.r | 58 ++------------
TODO | 2
configure.ac | 2
inst/doc/pbdPROF-guide.pdf |binary
src/Makevars.in | 12 +--
src/Makevars.win | 135 +++++++++-------------------------
src/fpmpi/profiler.c | 125 +++++++++++++++++++------------
src/fpmpi/resrc.c | 1
src/fpmpi/topology.c | 1
src/fpmpi/win/profiler.h | 2
vignettes/include/02-installation.tex | 2
15 files changed, 202 insertions(+), 290 deletions(-)
Title: Programming with Big Data -- Interface to MPI
Diff between pbdMPI versions 0.2-2 dated 2014-01-27 and 0.2-3 dated 2014-05-26
Description: pbdMPI provides an efficient interface to MPI by utilizing S4
classes and methods with a focus on Single Program/Multiple Data (SPMD)
parallel programming style, which is intended for batch parallel
execution.
Author: Wei-Chen Chen [aut, cre],
George Ostrouchov [aut],
Drew Schmidt [aut],
Pragneshkumar Patel [aut],
Hao Yu [aut],
Christian Heckendorf [ctb] (FreeBSD),
Brian Ripley [ctb] (Windows HPC Pack 2012),
R Core team [ctb] (some functions are modified from the base packages)
Maintainer: Wei-Chen Chen
pbdMPI-0.2-2/pbdMPI/inst/examples/test_cs/00_readme.txt |only
pbdMPI-0.2-2/pbdMPI/vignettes/pbdMPI-include/04-windows.tex |only
pbdMPI-0.2-3/pbdMPI/ChangeLog | 26
pbdMPI-0.2-3/pbdMPI/DESCRIPTION | 24
pbdMPI-0.2-3/pbdMPI/INSTALL | 119 +--
pbdMPI-0.2-3/pbdMPI/MD5 | 363 +++++-----
pbdMPI-0.2-3/pbdMPI/NAMESPACE | 1
pbdMPI-0.2-3/pbdMPI/R/api_apply.r | 2
pbdMPI-0.2-3/pbdMPI/R/api_apply_RC.r | 2
pbdMPI-0.2-3/pbdMPI/R/api_apply_general.r | 8
pbdMPI-0.2-3/pbdMPI/R/api_lapply.r | 2
pbdMPI-0.2-3/pbdMPI/R/api_sapply.r | 2
pbdMPI-0.2-3/pbdMPI/R/api_task_pull.r | 180 ----
pbdMPI-0.2-3/pbdMPI/R/comm_allcommon.r |only
pbdMPI-0.2-3/pbdMPI/R/comm_allpairs.r |only
pbdMPI-0.2-3/pbdMPI/R/comm_any_all.r |only
pbdMPI-0.2-3/pbdMPI/R/comm_as_gbd.r |only
pbdMPI-0.2-3/pbdMPI/R/comm_balance.r | 23
pbdMPI-0.2-3/pbdMPI/R/comm_base.r | 2
pbdMPI-0.2-3/pbdMPI/R/comm_dist.r |only
pbdMPI-0.2-3/pbdMPI/R/comm_errors.r | 2
pbdMPI-0.2-3/pbdMPI/R/comm_pairwise.r |only
pbdMPI-0.2-3/pbdMPI/R/comm_read.r | 43 -
pbdMPI-0.2-3/pbdMPI/R/comm_seed.r | 4
pbdMPI-0.2-3/pbdMPI/R/comm_sort.r | 1
pbdMPI-0.2-3/pbdMPI/R/comm_tool.r | 14
pbdMPI-0.2-3/pbdMPI/R/comm_which.r | 2
pbdMPI-0.2-3/pbdMPI/R/get_winmpi.r | 58 -
pbdMPI-0.2-3/pbdMPI/R/spmd_allgatherv.r | 22
pbdMPI-0.2-3/pbdMPI/R/spmd_allreduce.r | 12
pbdMPI-0.2-3/pbdMPI/R/spmd_allreduce_obj.r | 2
pbdMPI-0.2-3/pbdMPI/R/spmd_bcast.r | 27
pbdMPI-0.2-3/pbdMPI/R/spmd_bcast_obj.r | 3
pbdMPI-0.2-3/pbdMPI/R/spmd_communicator.r | 17
pbdMPI-0.2-3/pbdMPI/R/spmd_gatherv.r | 24
pbdMPI-0.2-3/pbdMPI/R/spmd_gatherv_obj.r | 2
pbdMPI-0.2-3/pbdMPI/R/spmd_irecv.r | 5
pbdMPI-0.2-3/pbdMPI/R/spmd_isend.r | 16
pbdMPI-0.2-3/pbdMPI/R/spmd_recv.r | 4
pbdMPI-0.2-3/pbdMPI/R/spmd_reduce.r | 13
pbdMPI-0.2-3/pbdMPI/R/spmd_scatterv.r | 33
pbdMPI-0.2-3/pbdMPI/R/spmd_scatterv_obj.r | 25
pbdMPI-0.2-3/pbdMPI/R/spmd_send.r | 4
pbdMPI-0.2-3/pbdMPI/R/spmd_sendrecv.r | 67 -
pbdMPI-0.2-3/pbdMPI/R/spmd_sendrecv_replace.r | 67 -
pbdMPI-0.2-3/pbdMPI/R/spmd_wait.r | 2
pbdMPI-0.2-3/pbdMPI/R/windows/zzz.r | 28
pbdMPI-0.2-3/pbdMPI/R/zzz.r.in | 38 -
pbdMPI-0.2-3/pbdMPI/README | 2
pbdMPI-0.2-3/pbdMPI/configure | 53 +
pbdMPI-0.2-3/pbdMPI/configure.ac | 52 +
pbdMPI-0.2-3/pbdMPI/data/control.r | 6
pbdMPI-0.2-3/pbdMPI/data/control_tp.r |only
pbdMPI-0.2-3/pbdMPI/data/envir.r |only
pbdMPI-0.2-3/pbdMPI/demo/00Index | 31
pbdMPI-0.2-3/pbdMPI/demo/allgather.r | 4
pbdMPI-0.2-3/pbdMPI/demo/allreduce.r | 4
pbdMPI-0.2-3/pbdMPI/demo/any_all.r | 8
pbdMPI-0.2-3/pbdMPI/demo/bcast.r | 4
pbdMPI-0.2-3/pbdMPI/demo/divide.r | 5
pbdMPI-0.2-3/pbdMPI/demo/gather.r | 4
pbdMPI-0.2-3/pbdMPI/demo/pbdApply.r | 4
pbdMPI-0.2-3/pbdMPI/demo/pbdLapply.r | 4
pbdMPI-0.2-3/pbdMPI/demo/reduce.r | 4
pbdMPI-0.2-3/pbdMPI/demo/scatter.r | 6
pbdMPI-0.2-3/pbdMPI/demo/seed.r | 14
pbdMPI-0.2-3/pbdMPI/demo/simple_balance.r | 4
pbdMPI-0.2-3/pbdMPI/demo/simple_io.r | 6
pbdMPI-0.2-3/pbdMPI/demo/simple_pairs.r |only
pbdMPI-0.2-3/pbdMPI/demo/sort.r | 8
pbdMPI-0.2-3/pbdMPI/demo/task_pull.r | 8
pbdMPI-0.2-3/pbdMPI/inst/CITATION | 8
pbdMPI-0.2-3/pbdMPI/inst/doc/pbdMPI-guide.Rnw | 7
pbdMPI-0.2-3/pbdMPI/inst/doc/pbdMPI-guide.pdf |binary
pbdMPI-0.2-3/pbdMPI/inst/examples/test_cs/README |only
pbdMPI-0.2-3/pbdMPI/inst/examples/test_cs/named.client.r | 12
pbdMPI-0.2-3/pbdMPI/inst/examples/test_cs/named.server.r | 12
pbdMPI-0.2-3/pbdMPI/inst/examples/test_cs/simple.client.r | 12
pbdMPI-0.2-3/pbdMPI/inst/examples/test_cs/simple.server.r | 12
pbdMPI-0.2-3/pbdMPI/inst/examples/test_long_vector/00_test_all.sh | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_long_vector/00_test_all.win | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_long_vector/allgather.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_long_vector/allreduce.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_long_vector/bcast.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_long_vector/gather.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_long_vector/reduce.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_long_vector/scatter.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_long_vector/send_recv.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_parallel/00_test_all.sh | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_parallel/00_test_all.win | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_parallel/01_mclapply_par.r | 3
pbdMPI-0.2-3/pbdMPI/inst/examples/test_parallel/01_mclapply_spmd.r | 2
pbdMPI-0.2-3/pbdMPI/inst/examples/test_parallel/02_parMM_par.r | 2
pbdMPI-0.2-3/pbdMPI/inst/examples/test_parallel/02_parMM_spmd.r | 2
pbdMPI-0.2-3/pbdMPI/inst/examples/test_parallel/03_boot_par.r | 3
pbdMPI-0.2-3/pbdMPI/inst/examples/test_parallel/03_boot_spmd.r | 2
pbdMPI-0.2-3/pbdMPI/inst/examples/test_parallel/04_glm_par.r | 3
pbdMPI-0.2-3/pbdMPI/inst/examples/test_parallel/04_glm_spmd.r | 2
pbdMPI-0.2-3/pbdMPI/inst/examples/test_performance/00_test_all.sh | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_performance/00_test_all.win | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_rmpi/00_test_all.sh | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_rmpi/00_test_spmd.win | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_rmpi/allgather_rmpi.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_rmpi/allgather_spmd.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_rmpi/allgatherv_rmpi.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_rmpi/allgatherv_spmd.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_rmpi/allreduce_rmpi.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_rmpi/allreduce_spmd.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_rmpi/bcast_rmpi.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_rmpi/bcast_spmd.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_rmpi/gather_rmpi.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_rmpi/gather_spmd.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_rmpi/reduce_rmpi.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_rmpi/reduce_spmd.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_rmpi/scatter_rmpi.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_rmpi/scatter_spmd.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_rmpi/scatterv_rmpi.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_rmpi/scatterv_spmd.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_rmpi/sendrecv_rmpi.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_rmpi/sendrecv_spmd.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_s4/00_test_all.sh | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_s4/00_test_all.win | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_s4/01_simple.r | 5
pbdMPI-0.2-3/pbdMPI/inst/examples/test_s4/02_mean.r | 5
pbdMPI-0.2-3/pbdMPI/inst/examples/test_spmd/00_test_all.sh | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_spmd/00_test_all.win | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_spmd/allgather.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_spmd/allreduce.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_spmd/bcast.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_spmd/gather.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_spmd/isend_irecv_wait.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_spmd/reduce.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_spmd/replace.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_spmd/scatter.r | 5
pbdMPI-0.2-3/pbdMPI/inst/examples/test_spmd/send_recv.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_spmd/sendrecv.r | 1
pbdMPI-0.2-3/pbdMPI/inst/examples/test_spmd/sendrecv_replace.r | 3
pbdMPI-0.2-3/pbdMPI/man/00_pbdMPI-package.Rd | 1
pbdMPI-0.2-3/pbdMPI/man/11_d_control.Rd | 16
pbdMPI-0.2-3/pbdMPI/man/aa_allgather-method.Rd | 10
pbdMPI-0.2-3/pbdMPI/man/aa_allreduce-method.Rd | 10
pbdMPI-0.2-3/pbdMPI/man/aa_bcast-method.Rd | 10
pbdMPI-0.2-3/pbdMPI/man/aa_gather-method.Rd | 10
pbdMPI-0.2-3/pbdMPI/man/aa_reduce-method.Rd | 10
pbdMPI-0.2-3/pbdMPI/man/aa_scatter-method.Rd | 10
pbdMPI-0.2-3/pbdMPI/man/ab_recv-method.Rd | 11
pbdMPI-0.2-3/pbdMPI/man/ab_send-method.Rd | 10
pbdMPI-0.2-3/pbdMPI/man/ac_irecv-method.Rd | 11
pbdMPI-0.2-3/pbdMPI/man/ac_isend-method.Rd | 10
pbdMPI-0.2-3/pbdMPI/man/ad_sendrecv-method.Rd | 18
pbdMPI-0.2-3/pbdMPI/man/ad_sendrecv.replace-method.Rd | 18
pbdMPI-0.2-3/pbdMPI/man/cc_arrange.mpi.apts.Rd | 1
pbdMPI-0.2-3/pbdMPI/man/cc_comm.Rd | 11
pbdMPI-0.2-3/pbdMPI/man/dd_info.Rd | 11
pbdMPI-0.2-3/pbdMPI/man/dd_prob.Rd | 1
pbdMPI-0.2-3/pbdMPI/man/dd_sourcetag.Rd | 11
pbdMPI-0.2-3/pbdMPI/man/dd_wait.Rd | 11
pbdMPI-0.2-3/pbdMPI/man/vv_get_jid.Rd | 11
pbdMPI-0.2-3/pbdMPI/man/vv_print_cat.Rd | 11
pbdMPI-0.2-3/pbdMPI/man/vv_seed.Rd | 19
pbdMPI-0.2-3/pbdMPI/man/ww_comm_as_gbd.Rd |only
pbdMPI-0.2-3/pbdMPI/man/ww_comm_balance.Rd | 16
pbdMPI-0.2-3/pbdMPI/man/ww_comm_read.Rd | 13
pbdMPI-0.2-3/pbdMPI/man/ww_comm_write.Rd | 13
pbdMPI-0.2-3/pbdMPI/man/xx_comm_Rprof.Rd | 3
pbdMPI-0.2-3/pbdMPI/man/xx_comm_allpairs.Rd |only
pbdMPI-0.2-3/pbdMPI/man/xx_comm_any_all.Rd | 52 -
pbdMPI-0.2-3/pbdMPI/man/xx_comm_base.Rd | 13
pbdMPI-0.2-3/pbdMPI/man/xx_comm_dist.Rd |only
pbdMPI-0.2-3/pbdMPI/man/xx_comm_pairwise.Rd |only
pbdMPI-0.2-3/pbdMPI/man/xx_comm_range.Rd | 13
pbdMPI-0.2-3/pbdMPI/man/xx_comm_sort.Rd | 19
pbdMPI-0.2-3/pbdMPI/man/xx_comm_stop_warning.Rd | 13
pbdMPI-0.2-3/pbdMPI/man/xx_comm_timer.Rd | 3
pbdMPI-0.2-3/pbdMPI/man/xx_comm_which.Rd | 13
pbdMPI-0.2-3/pbdMPI/man/yy_api_apply.Rd | 15
pbdMPI-0.2-3/pbdMPI/man/yy_api_task_pull.Rd | 9
pbdMPI-0.2-3/pbdMPI/man/zz_comm_internal.Rd |only
pbdMPI-0.2-3/pbdMPI/man/zz_internal.Rd | 11
pbdMPI-0.2-3/pbdMPI/man/zz_spmd_internal.Rd | 1
pbdMPI-0.2-3/pbdMPI/src/Makevars.in | 38 -
pbdMPI-0.2-3/pbdMPI/src/Makevars.win | 129 ---
pbdMPI-0.2-3/pbdMPI/src/spmd_constant.h | 5
pbdMPI-0.2-3/pbdMPI/vignettes/pbdMPI-guide.Rnw | 7
pbdMPI-0.2-3/pbdMPI/vignettes/pbdMPI-include/01-acknowledgement.tex | 6
pbdMPI-0.2-3/pbdMPI/vignettes/pbdMPI-include/01-introduction.tex | 14
pbdMPI-0.2-3/pbdMPI/vignettes/pbdMPI-include/02-performance.tex | 1
pbdMPI-0.2-3/pbdMPI/vignettes/pbdMPI-include/03-faq.tex | 43 -
pbdMPI-0.2-3/pbdMPI/vignettes/pbdMPI-include/04-windows_msmpi.tex |only
pbdMPI-0.2-3/pbdMPI/vignettes/pbdMPI-include/06-longvector.tex | 3
pbdMPI-0.2-3/pbdMPI/vignettes/pbdMPI-include/07-simpleio.tex | 3
pbdMPI-0.2-3/pbdMPI/vignettes/pbdMPI-include/08-simplepairs.tex |only
192 files changed, 1164 insertions(+), 1200 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-08-21 0.1.3
2013-02-09 0.1.2
Title: Diversity-dependent diversification
Diff between DDD versions 2.4 dated 2013-10-23 and 2.5 dated 2014-05-26
Description:
DDD implements maximum likelihood methods based on the diversity-dependent birth-death process to test whether speciation or extinction are diversity-dependent.
See Etienne et al. 2012, Proc. Roy. Soc. B 279: 1300-1309, doi: 10.1098/rspb.2011.1439.
DDD also implements a maximum likelihood method to detect key innovations defined as decoupling of diversity-dependence.
See Etienne & Haegeman 2012, Am. Nat. 180: E75-E89, doi: 10.1086/667574.
Finally, DDD contains a function to simulate the diversity-dependent process.
Author: Rampal S. Etienne & Bart Haegeman
Maintainer: Rampal S. Etienne
DESCRIPTION | 10 +++++-----
MD5 | 35 +++++++++++++++++++----------------
NAMESPACE | 1 +
R/L2phylo.R | 13 ++++++-------
R/bd_loglik.R | 20 +++++++++++++++-----
R/brts2phylo.R |only
R/dd_KI_ML.R | 1 +
R/dd_KI_loglik.R | 28 ++++++++++++++++++++++------
R/dd_KI_loglikold.R |only
R/dd_SR_loglik.R | 7 ++++++-
R/dd_bootstrap_sim.R |only
R/dd_loglik.R | 7 ++++++-
R/dd_loglik_bw_rhs.R | 1 +
R/dd_loglik_rhs.R | 1 +
R/dd_logliknorm_rhs2.R | 32 +++++++++++++++++++-------------
man/DDD-internal.Rd | 3 +++
man/DDD-package.Rd | 9 +++++++--
man/bd_loglik.Rd | 2 +-
man/dd_ML.Rd | 10 +++++-----
man/dd_sim.Rd | 4 ++--
20 files changed, 120 insertions(+), 64 deletions(-)
Title: Protracted birth-death model of diversification
Diff between PBD versions 0.9 dated 2014-04-17 and 1.0 dated 2014-05-26
Description: Maximum likelihood analysis of the protracted speciation model
Author: Rampal S. Etienne
Maintainer: Rampal S. Etienne
DESCRIPTION | 8 ++--
MD5 | 24 ++++++------
R/pbd_ML.R | 6 ++-
R/pbd_bootstrap.R | 6 +--
R/pbd_bootstrap_sim.R | 4 +-
R/pbd_loglik.R | 41 ++++++++++++++++++++-
R/pbd_sim.R | 94 ++++++++++++++++++++++++++++++++++++++++----------
R/pbd_simplex.R | 8 ++--
man/PBD-package.Rd | 17 ++++++---
man/pbd_ML.Rd | 4 ++
man/pbd_bootstrap.Rd | 4 ++
man/pbd_loglik.Rd | 4 +-
man/pbd_sim.Rd | 26 ++++++++++---
13 files changed, 189 insertions(+), 57 deletions(-)
Title: Constrained, covariance-matching constrained and universal point
or block kriging
Diff between constrainedKriging versions 0.2.2 dated 2013-10-02 and 0.2.3 dated 2014-05-26
More information about constrainedKriging at CRAN
Description: The constrainedKriging package provides functions for
efficient computations of nonlinear spatial predictions with
local change of support. The package supplies functions for
tow-dimensional spatial interpolation by constrained,
covariance-matching constrained and universal (external drift)
kriging for points or block of any shape for data with a
nonstationary mean function and an isotropic weakly stationary
variogram. The linear spatial interpolation methods,
constrained and covariance-matching constrained kriging,
provide approximately unbiased prediction for nonlinear target
values under change of support. The constrainedKriging package
extends the range of geostatistical tools available in R and
provides a veritable alternative to conditional simulation for
nonlinear spatial prediction problems with local change of
support.
Author: Christoph Hofer
Maintainer: Christoph Hofer
constrainedKriging-0.2.2/constrainedKriging/R/z#f.build.pixel.R |only
constrainedKriging-0.2.3/constrainedKriging/DESCRIPTION | 8 +++----
constrainedKriging-0.2.3/constrainedKriging/MD5 | 11 ++++------
constrainedKriging-0.2.3/constrainedKriging/NAMESPACE | 2 -
constrainedKriging-0.2.3/constrainedKriging/R/AAA.R | 1
constrainedKriging-0.2.3/constrainedKriging/R/f.point.rec.covmat.R | 2 -
constrainedKriging-0.2.3/constrainedKriging/R/f.preCKrige.check.and.test.R | 2 -
7 files changed, 13 insertions(+), 13 deletions(-)
Permanent link
Title: Modelling and validation of non homogeneous Poisson processes
Diff between NHPoisson versions 2.1 dated 2014-03-06 and 3.0 dated 2014-05-26
Description: Tools for modelling, ML estimation, validation analysis and simulation of non homogeneous Poisson processes in time.
Author: Ana C. Cebrian
Maintainer: Ana C. Cebrian
NHPoisson-2.1/NHPoisson/R/CIdelta.fun.R |only
NHPoisson-2.1/NHPoisson/R/CItran.fun.R |only
NHPoisson-2.1/NHPoisson/R/CalcRes.fun.R |only
NHPoisson-2.1/NHPoisson/R/CalcResD.fun.R |only
NHPoisson-2.1/NHPoisson/R/GenEnv.fun.R |only
NHPoisson-2.1/NHPoisson/R/LRTpv.fun.R |only
NHPoisson-2.1/NHPoisson/R/NHPoisson-internal.R |only
NHPoisson-2.1/NHPoisson/R/POTevents.fun.R |only
NHPoisson-2.1/NHPoisson/R/VARbeta.fun.R |only
NHPoisson-2.1/NHPoisson/R/buscar.R |only
NHPoisson-2.1/NHPoisson/R/emplambda.fun.R |only
NHPoisson-2.1/NHPoisson/R/emplambdaD.fun.R |only
NHPoisson-2.1/NHPoisson/R/fitPP.fun.R |only
NHPoisson-2.1/NHPoisson/R/funSim.fun.R |only
NHPoisson-2.1/NHPoisson/R/globalval.fun.R |only
NHPoisson-2.1/NHPoisson/R/graphResCov.fun.R |only
NHPoisson-2.1/NHPoisson/R/graphResX.fun.R |only
NHPoisson-2.1/NHPoisson/R/graphrate.fun.R |only
NHPoisson-2.1/NHPoisson/R/graphres.fun.R |only
NHPoisson-2.1/NHPoisson/R/graphresU.fun.R |only
NHPoisson-2.1/NHPoisson/R/posk.fun.R |only
NHPoisson-2.1/NHPoisson/R/resQQplot.fun.R |only
NHPoisson-2.1/NHPoisson/R/resSim.fun.R |only
NHPoisson-2.1/NHPoisson/R/simNHP.fun.R |only
NHPoisson-2.1/NHPoisson/R/summaryfit.fun.R |only
NHPoisson-2.1/NHPoisson/R/testlik.fun.R |only
NHPoisson-2.1/NHPoisson/R/transfH.fun.R |only
NHPoisson-2.1/NHPoisson/R/unifres.fun.R |only
NHPoisson-2.1/NHPoisson/man/summaryfit.fun.Rd |only
NHPoisson-3.0/NHPoisson/DESCRIPTION | 9 -
NHPoisson-3.0/NHPoisson/MD5 | 108 +++++++++++---------
NHPoisson-3.0/NHPoisson/NAMESPACE | 9 +
NHPoisson-3.0/NHPoisson/R/CIdelta.fun.r |only
NHPoisson-3.0/NHPoisson/R/CItran.fun.r |only
NHPoisson-3.0/NHPoisson/R/CalcRes.fun.r |only
NHPoisson-3.0/NHPoisson/R/CalcResD.fun.r |only
NHPoisson-3.0/NHPoisson/R/ClassmlePP.r |only
NHPoisson-3.0/NHPoisson/R/GenEnv.fun.r |only
NHPoisson-3.0/NHPoisson/R/LRTpv.fun.r |only
NHPoisson-3.0/NHPoisson/R/Potevents.fun.r |only
NHPoisson-3.0/NHPoisson/R/VARbeta.fun.r |only
NHPoisson-3.0/NHPoisson/R/addAIC.fun.r |only
NHPoisson-3.0/NHPoisson/R/buscar.r |only
NHPoisson-3.0/NHPoisson/R/checkdim.r |only
NHPoisson-3.0/NHPoisson/R/confintAsin.fun.r |only
NHPoisson-3.0/NHPoisson/R/dropAIC.fun.r |only
NHPoisson-3.0/NHPoisson/R/emplambda.fun.r |only
NHPoisson-3.0/NHPoisson/R/emplambdaD.fun.r |only
NHPoisson-3.0/NHPoisson/R/extractAIC_mle.r |only
NHPoisson-3.0/NHPoisson/R/fitPP.fun.r |only
NHPoisson-3.0/NHPoisson/R/funSim.fun.r |only
NHPoisson-3.0/NHPoisson/R/globalval.fun.r |only
NHPoisson-3.0/NHPoisson/R/graphResCov.fun.r |only
NHPoisson-3.0/NHPoisson/R/graphResX.fun.r |only
NHPoisson-3.0/NHPoisson/R/graphrate.fun.r |only
NHPoisson-3.0/NHPoisson/R/graphres.fun.r |only
NHPoisson-3.0/NHPoisson/R/graphresU.fun.r |only
NHPoisson-3.0/NHPoisson/R/posk.fun.r |only
NHPoisson-3.0/NHPoisson/R/profile_mlePP.r |only
NHPoisson-3.0/NHPoisson/R/resQQplot.fun.r |only
NHPoisson-3.0/NHPoisson/R/resSim.fun.r |only
NHPoisson-3.0/NHPoisson/R/simNHP.fun.r |only
NHPoisson-3.0/NHPoisson/R/stepAICmle.fun.r |only
NHPoisson-3.0/NHPoisson/R/testlik.fun.r |only
NHPoisson-3.0/NHPoisson/R/transfH.fun.r |only
NHPoisson-3.0/NHPoisson/R/unifres.fun.r |only
NHPoisson-3.0/NHPoisson/man/CIdelta.fun.Rd | 5
NHPoisson-3.0/NHPoisson/man/CItran.fun.Rd | 9 -
NHPoisson-3.0/NHPoisson/man/CalcRes.fun.Rd | 14 +-
NHPoisson-3.0/NHPoisson/man/CalcResD.fun.Rd | 14 +-
NHPoisson-3.0/NHPoisson/man/GenEnv.fun.Rd | 2
NHPoisson-3.0/NHPoisson/man/LRTpv.fun.Rd | 25 +---
NHPoisson-3.0/NHPoisson/man/NHPoisson-package.Rd | 10 -
NHPoisson-3.0/NHPoisson/man/VARbeta.fun.Rd | 16 +-
NHPoisson-3.0/NHPoisson/man/addAIC.fun.Rd |only
NHPoisson-3.0/NHPoisson/man/confintAsin.fun.Rd |only
NHPoisson-3.0/NHPoisson/man/dropAIC.fun.Rd |only
NHPoisson-3.0/NHPoisson/man/extractAIC-methods.Rd |only
NHPoisson-3.0/NHPoisson/man/fitPP.fun.Rd | 118 ++++++++++++----------
NHPoisson-3.0/NHPoisson/man/globalval.fun.Rd | 14 +-
NHPoisson-3.0/NHPoisson/man/graphResCov.fun.Rd | 21 ++-
NHPoisson-3.0/NHPoisson/man/graphResX.fun.Rd | 23 ++--
NHPoisson-3.0/NHPoisson/man/graphrate.fun.Rd | 6 -
NHPoisson-3.0/NHPoisson/man/graphres.fun.Rd | 6 -
NHPoisson-3.0/NHPoisson/man/mlePP-class.Rd |only
NHPoisson-3.0/NHPoisson/man/profile-methods.Rd |only
NHPoisson-3.0/NHPoisson/man/resQQplot.fun.Rd | 13 +-
NHPoisson-3.0/NHPoisson/man/stepAICmle.fun.Rd |only
NHPoisson-3.0/NHPoisson/man/testlik.fun.Rd | 20 +--
NHPoisson-3.0/NHPoisson/man/transfH.fun.Rd | 22 ++--
90 files changed, 253 insertions(+), 211 deletions(-)
Title: Various plotting functions
Diff between plotrix versions 3.5-5 dated 2014-03-12 and 3.5-7 dated 2014-05-26
Description: Lots of plots, various labeling, axis and color scaling functions.
Author: Jim Lemon, Ben Bolker, Sander Oom,
Eduardo Klein, Barry Rowlingson,
Hadley Wickham, Anupam Tyagi,
Olivier Eterradossi, Gabor Grothendieck,
Michael Toews, John Kane, Rolf Turner,
Carl Witthoft, Julian Stander, Thomas Petzoldt,
Remko Duursma, Elisa Biancotto, Ofir Levy,
Christophe Dutang, Peter Solymos, Robby Engelmann,
Michael Hecker, Felix Steinbeck, Hans Borchers,
Henrik Singmann, Ted Toal, Derek Ogle
Maintainer: Jim Lemon
DESCRIPTION | 8 ++--
MD5 | 31 +++++++++---------
NEWS | 5 ++
R/box.heresy.R | 27 ++++++++++-----
R/boxed.labels.R | 87 +++++++++++++++++++++++++--------------------------
R/brkdn.plot.R | 4 +-
R/cluster.overplot.R | 6 +--
R/pie3D.R | 23 ++++++++-----
R/radial.grid.R |only
R/radial.pie.R | 43 -------------------------
R/radial.plot.R | 2 -
R/staxlab.R | 11 +++---
data/soils.rda |binary
man/box.heresy.Rd | 30 +++++++++++++++--
man/brkdn.plot.Rd | 2 -
man/pie3D.Rd | 2 -
man/radial.grid.Rd | 6 ++-
17 files changed, 145 insertions(+), 142 deletions(-)
Title: Case Influence in Structural Equation Models
Diff between influence.SEM versions 1.2 dated 2013-12-30 and 1.3 dated 2014-05-26
Description: influence.SEM provides a set of tools for evaluating several measures of case influence for Structural Equation Models following the approach of Pek and MacCallum (2011).
Author: Massimiliano Pastore & Gianmarco Altoe'
Maintainer: Massimiliano Pastore
DESCRIPTION | 8 +--
MD5 | 8 +--
NAMESPACE | 1
R/parinfluence.R | 92 ++++++++++++++++++++++---------------------
man/influence.SEM-package.Rd | 4 -
5 files changed, 60 insertions(+), 53 deletions(-)
Title: Univariate GARCH models
Diff between rugarch versions 1.3-1 dated 2014-01-24 and 1.3-3 dated 2014-05-26
Description: ARFIMA, in-mean, external regressors and various GARCH flavors, with methods for fit, forecast, simulation, inference and plotting.
Author: Alexios Ghalanos
Maintainer: Alexios Ghalanos
.Rinstignore | 4
ChangeLog | 19 +
DESCRIPTION | 11 -
MD5 | 54 ++---
R/arfima-methods.R | 20 +
R/rugarch-aparch.R | 4
R/rugarch-csgarch.R | 4
R/rugarch-egarch.R | 6
R/rugarch-fgarch.R | 9
R/rugarch-gjrgarch.R | 4
R/rugarch-helperfn.R | 12 -
R/rugarch-igarch.R | 6
R/rugarch-methods.R | 81 ++++---
R/rugarch-plots.R | 9
R/rugarch-sgarch.R | 4
R/rugarch-startpars.R | 144 ++++++-------
R/rugarch-tests.R | 231 +++++++++++++++++++++-
build/vignette.rds |binary
data/dji30ret.rda |binary
inst/COPYRIGHTS | 2
inst/doc/Introduction_to_the_rugarch_package.Rnw | 2
inst/doc/Introduction_to_the_rugarch_package.pdf |binary
man/VaRplot.Rd | 7
man/rugarch-package.Rd | 12 -
man/ugarchpath-methods.Rd | 2
vignettes/Introduction_to_the_rugarch_package.Rnw | 2
vignettes/Introduction_to_the_rugarch_package.tex | 2
vignettes/rugarch.tex | 177 ++++++++--------
vignettes/rugarchbib.bib | 16 +
29 files changed, 561 insertions(+), 283 deletions(-)
Title: R Package for the BitCoinCharts.com API
Diff between rbitcoinchartsapi versions 1.0.0 dated 2014-05-19 and 1.0.1 dated 2014-05-26
More information about rbitcoinchartsapi at CRAN
Description: An R package for the BitCoinCharts.com API. Note that this package
is an independent effort and not affiliated with the bitcoincharts.com
website.
Author: Thomas P. Fuller
Maintainer: Thomas P. Fuller
DESCRIPTION | 10 ++--
MD5 | 14 ++---
NAMESPACE | 10 ++--
NEWS | 10 ++--
R/rbitcoinchartsapi.R | 108 +++++++++++++++++++++++---------------------
man/GetHistoricTradeData.Rd | 28 ++++++-----
man/GetMarketData.Rd | 22 ++++----
man/GetWeightedPrices.Rd | 27 ++++++-----
8 files changed, 126 insertions(+), 103 deletions(-)
Permanent link