Sat, 31 May 2014

Package ipdw (with last version 0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-05-29 0.1

Permanent link
Package pbdSLAP updated to version 0.1-9 with previous version 0.1-8 dated 2014-03-11

Title: Programming with Big Data -- Scalable Linear Algebra Packages
Description: pbdSLAP utilizes scalable linear algebra packages mainly including BLACS, PBLAS, and ScaLAPACK in double precision via pbdMPI based on ScaLAPACK version 2.0.2.
Author: Wei-Chen Chen [aut, cre], Drew Schmidt [aut], George Ostrouchov [aut], Pragneshkumar Patel [aut], Brian Ripley [ctb] (Solaris)
Maintainer: Wei-Chen Chen

Diff between pbdSLAP versions 0.1-8 dated 2014-03-11 and 0.1-9 dated 2014-05-31

 Makefile                                                                   |   22 
 tmp/cranberry65e6753c19ab/pbdSLAP-0.1-9/pbdSLAP/COPYING                    |only
 tmp/cranberry65e6753c19ab/pbdSLAP-0.1-9/pbdSLAP/ChangeLog                  |    3 
 tmp/cranberry65e6753c19ab/pbdSLAP-0.1-9/pbdSLAP/DESCRIPTION                |   22 
 tmp/cranberry65e6753c19ab/pbdSLAP-0.1-9/pbdSLAP/INSTALL                    |    8 
 tmp/cranberry65e6753c19ab/pbdSLAP-0.1-9/pbdSLAP/MD5                        |   45 
 tmp/cranberry65e6753c19ab/pbdSLAP-0.1-9/pbdSLAP/R/get_conf.r               |    7 
 tmp/cranberry65e6753c19ab/pbdSLAP-0.1-9/pbdSLAP/README                     |    2 
 tmp/cranberry65e6753c19ab/pbdSLAP-0.1-9/pbdSLAP/configure                  |  854 ----------
 tmp/cranberry65e6753c19ab/pbdSLAP-0.1-9/pbdSLAP/configure.ac               |   14 
 tmp/cranberry65e6753c19ab/pbdSLAP-0.1-9/pbdSLAP/inst/CITATION              |    2 
 tmp/cranberry65e6753c19ab/pbdSLAP-0.1-9/pbdSLAP/inst/doc/pbdSLAP-guide.pdf |binary
 tmp/cranberry65e6753c19ab/pbdSLAP-0.1-9/pbdSLAP/man/00_pbdSLAP-package.Rd  |    2 
 tmp/cranberry65e6753c19ab/pbdSLAP-0.1-9/pbdSLAP/src/BLACS/Makefile         |    4 
 tmp/cranberry65e6753c19ab/pbdSLAP-0.1-9/pbdSLAP/src/Makevars.in            |   63 
 tmp/cranberry65e6753c19ab/pbdSLAP-0.1-9/pbdSLAP/src/Makevars.win           |   40 
 tmp/cranberry65e6753c19ab/pbdSLAP-0.1-9/pbdSLAP/src/PBLAS/Makefile         |    4 
 17 files changed, 137 insertions(+), 955 deletions(-)

More information about pbdSLAP at CRAN
Permanent link

Package pbdMPI updated to version 0.2-4 with previous version 0.2-3 dated 2014-05-26

Title: Programming with Big Data -- Interface to MPI
Description: pbdMPI provides an efficient interface to MPI by utilizing S4 classes and methods with a focus on Single Program/Multiple Data (SPMD) parallel programming style, which is intended for batch parallel execution.
Author: Wei-Chen Chen [aut, cre], George Ostrouchov [aut], Drew Schmidt [aut], Pragneshkumar Patel [aut], Hao Yu [aut], Christian Heckendorf [ctb] (FreeBSD), Brian Ripley [ctb] (Windows HPC Pack 2012), R Core team [ctb] (some functions are modified from the base packages)
Maintainer: Wei-Chen Chen

Diff between pbdMPI versions 0.2-3 dated 2014-05-26 and 0.2-4 dated 2014-05-31

 ChangeLog                 |    6 
 DESCRIPTION               |    8 
 MD5                       |   16 
 configure                 | 2050 +++++++++++++++++++++++-----------------------
 configure.ac              |    1 
 inst/doc/pbdMPI-guide.pdf |binary
 src/Makevars.win          |    5 
 src/spmd.c                |    4 
 src/spmd_communicator.c   |    2 
 9 files changed, 1049 insertions(+), 1043 deletions(-)

More information about pbdMPI at CRAN
Permanent link

Package RcppGSL updated to version 0.2.2 with previous version 0.2.1 dated 2014-05-27

Title: Rcpp integration for GNU GSL vectors and matrices
Description: Rcpp integration for GNU GSL vectors and matrices The GNU Scientific Library (GSL) is a collection of numerical routines for scientific computing. It is particularly useful for C and C++ programs as it provides a standard C interface to a wide range of mathematical routines such as special functions, permutations, combinations, fast fourier transforms, eigensystems, random numbers, quadrature, random distributions, quasi-random sequences, Monte Carlo integration, N-tuples, differential equations, simulated annealing, numerical differentiation, interpolation, series acceleration, Chebyshev approximations, root-finding, discrete Hankel transforms physical constants, basis splines and wavelets. There are over 1000 functions in total with an extensive test suite. The RcppGSL package provides an easy-to-use interface between GSL data structures and R using concepts from Rcpp which is itself a package that eases the interfaces between R and C++. This package also serves as a prime example of how to build a package that uses Rcpp to connect to another third-party library. The autoconf script, inline plugin and example package can all be used as a stanza to write a similar package against another library.
Author: Romain Francois and Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel

Diff between RcppGSL versions 0.2.1 dated 2014-05-27 and 0.2.2 dated 2014-05-31

 ChangeLog                      |   11 +++++++++++
 DESCRIPTION                    |    8 ++++----
 MD5                            |   12 ++++++------
 inst/NEWS.Rd                   |    7 +++++++
 inst/doc/RcppGSL-intro.pdf     |binary
 inst/doc/RcppGSL-unitTests.pdf |binary
 inst/include/RcppGSLForward.h  |    4 ++--
 7 files changed, 30 insertions(+), 12 deletions(-)

More information about RcppGSL at CRAN
Permanent link

Package RadOnc updated to version 1.0.8 with previous version 1.0.7 dated 2014-02-27

Title: Analytical Tools for Radiation Oncology
Description: This package is designed for the import, analysis, and visualization of dosimetric and volumetric data in Radiation Oncology. The tools herein enable import of DVH information from Varian's Aria/Eclipse platform and 3D structural representations and dosimetric information from DICOM-RT files. These tools also enable subsequent visualization and statistical analysis of these data.
Author: Reid F. Thompson
Maintainer: Reid F. Thompson

Diff between RadOnc versions 1.0.7 dated 2014-02-27 and 1.0.8 dated 2014-05-31

 DESCRIPTION             |    8 +--
 MD5                     |   34 ++++++++--------
 NAMESPACE               |    1 
 R/CLASSES.R             |   14 +++++-
 R/DVH.R                 |   20 +++++++++
 R/DVH.list.R            |   11 +++--
 R/compareStructures.R   |   13 +++---
 R/getStructureList.R    |only
 R/plot.DVH.R            |  101 ++++++++++++++++++++++++++++++++++++++++--------
 R/read.DICOM.RT.R       |   68 +++++++++++++++++++-------------
 R/read.DVH.R            |   14 +++++-
 R/structure.list.R      |    9 ++--
 inst/NEWS.Rd            |   32 +++++++++++++++
 inst/doc/RadOnc.R       |   89 +++++++++++++++++++++---------------------
 inst/doc/RadOnc.Rnw     |   11 +++--
 man/getStructureList.Rd |only
 man/plot-methods.Rd     |    6 +-
 man/read.DVH.Rd         |    4 -
 vignettes/RadOnc.Rnw    |   11 +++--
 19 files changed, 306 insertions(+), 140 deletions(-)

More information about RadOnc at CRAN
Permanent link

Package lasso2 updated to version 1.2-19 with previous version 1.2-18 dated 2013-10-31

Title: L1 constrained estimation aka `lasso'
Description: Routines and documentation for solving regression problems while imposing an L1 constraint on the estimates, based on the algorithm of Osborne et al. (1998)
Author: Justin Lokhorst, Bill Venables and Berwin Turlach; port to R, tests etc: Martin Maechler
Maintainer: Berwin Turlach

Diff between lasso2 versions 1.2-18 dated 2013-10-31 and 1.2-19 dated 2014-05-31

 DESCRIPTION        |    8 +--
 MD5                |    6 +-
 build/vignette.rds |binary
 src/lasso.c        |  135 -----------------------------------------------------
 4 files changed, 8 insertions(+), 141 deletions(-)

More information about lasso2 at CRAN
Permanent link

Package ggtern updated to version 1.0.3.2 with previous version 1.0.3.1 dated 2014-01-31

Title: An extension to ggplot2, for the creation of ternary diagrams.
Description: ggtern is a package that extends the functionality of ggplot2, giving the capability to plot ternary diagrams for (subset of) the ggplot2 geometries. Additionally, ggtern has implemented several NEW geometries which are unavailable to the standard ggplot2 release. For further examples and documentation, please proceed to the ggtern website.
Author: Nicholas Hamilton
Maintainer: Nicholas Hamilton

Diff between ggtern versions 1.0.3.1 dated 2014-01-31 and 1.0.3.2 dated 2014-05-31

 DESCRIPTION                    |   14 +-
 MD5                            |  153 ++++++++++++++++---------------
 NAMESPACE                      |   42 ++++++++
 NEWS                           |   11 ++
 R/coord-tern.R                 |   36 ++++++-
 R/geom-confidence.R            |   74 ++++++++++-----
 R/geom-density2d.R             |   12 +-
 R/geom-errorbarL.R             |    2 
 R/geom-errorbarT.R             |    2 
 R/geom-segment.R               |    2 
 R/gg-internal.R                |    3 
 R/ggsave.R                     |only
 R/global.R                     |    2 
 R/onLoad.R                     |    3 
 R/point-in-sequence.R          |only
 R/stat-density-2d.R            |    3 
 R/strip-unapproved.R           |    1 
 R/tern-render.R                |   35 ++++---
 R/theme-arrowbaseline.R        |    2 
 R/theme-arrowlength.R          |only
 R/theme-defaults.R             |    6 -
 R/theme-elements.R             |    4 
 R/utilities.R                  |   12 ++
 build/partial.rdb              |binary
 man/aes.Rd                     |   12 +-
 man/approved_geometries.Rd     |   15 +--
 man/convenience_functions.Rd   |    9 -
 man/coord.Rd                   |   50 ++++------
 man/coord_tern.Rd              |   22 ++--
 man/data.Rd                    |    8 -
 man/data_Feldspar.Rd           |   14 +-
 man/data_USDA.Rd               |   20 ++--
 man/element_ternary.Rd         |   35 +++----
 man/geom_TLRline.Rd            |   56 +++++------
 man/geom_density2d.Rd          |   19 +--
 man/geom_errorbarTLR.Rd        |   35 +++----
 man/geom_segment.Rd            |   12 +-
 man/geom_smooth.Rd             |   19 +--
 man/geomconfidence.Rd          |   15 +--
 man/ggplot_build.Rd            |   19 +--
 man/ggplot_gtable.Rd           |   23 ++--
 man/ggsave.Rd                  |only
 man/ggtern-labels.Rd           |   56 +++++------
 man/ggtern-package.Rd          |   38 +++----
 man/ggtern.Rd                  |   24 ++--
 man/ggtern.multi.Rd            |   39 +++-----
 man/iflasttern.Rd              |only
 man/kde2d.weighted.Rd          |    9 -
 man/logratio.Rd                |   34 +++----
 man/mahalanobis.Rd             |   10 +-
 man/notransform.Rd             |   10 +-
 man/overloaded.Rd              |  198 +++++++++++++++++++----------------------
 man/point.in.sequence.Rd       |only
 man/print.Rd                   |   14 +-
 man/scale_TLR_continuous.Rd    |   47 ++++-----
 man/showhidegrid.Rd            |   66 ++++++-------
 man/stat_density2d.Rd          |    9 -
 man/stat_smooth.Rd             |   13 +-
 man/strip_unapproved.Rd        |   18 +--
 man/suffix_arrow.Rd            |   50 +++++-----
 man/tern_dep.Rd                |   37 +++----
 man/tern_limits.Rd             |   28 ++---
 man/tern_stop.Rd               |    8 -
 man/ternary_transformations.Rd |   27 ++---
 man/theme_arrowbaseline.Rd     |   14 +-
 man/theme_bw.Rd                |    6 -
 man/theme_classic.Rd           |    6 -
 man/theme_clockwise.Rd         |   22 ++--
 man/theme_complete.Rd          |   26 ++---
 man/theme_elements.Rd          |   30 ++----
 man/theme_gray.Rd              |    6 -
 man/theme_minimal.Rd           |    6 -
 man/theme_rgbg.Rd              |    8 -
 man/theme_rgbw.Rd              |    8 -
 man/theme_showlabels.Rd        |   20 ++--
 man/theme_showprimary.Rd       |   96 +++++++++----------
 man/theme_showtitles.Rd        |   18 +--
 man/themearrowlength.Rd        |only
 man/themeshowhidearrows.Rd     |   18 +--
 man/themeticksoutside.Rd       |   14 +-
 man/undocumented.Rd            |  154 +++++++++++++++----------------
 81 files changed, 1041 insertions(+), 948 deletions(-)

More information about ggtern at CRAN
Permanent link

Package ChemoSpec updated to version 2.0-2 with previous version 1.61-3 dated 2013-09-20

Title: Exploratory Chemometrics for Spectroscopy
Description: A collection of functions for plotting spectra (NMR, IR etc) and carrying out various forms of top-down exploratory data analysis, such as HCA, PCA and model-based clustering. The design allows comparison of data from samples which fall into groups such as treatment vs. control. Robust methods appropriate for this type of high-dimensional data are available. ChemoSpec is designed to be very user friendly and suitable for people with limited background in R.
Author: Bryan A. Hanson DePauw University, Greencastle Indiana USA
Maintainer: Bryan A. Hanson

Diff between ChemoSpec versions 1.61-3 dated 2013-09-20 and 2.0-2 dated 2014-05-31

 ChemoSpec-1.61-3/ChemoSpec/R/getManyCsv.R            |only
 ChemoSpec-1.61-3/ChemoSpec/man/getManyCsv.Rd         |only
 ChemoSpec-2.0-2/ChemoSpec/DESCRIPTION                |    8 
 ChemoSpec-2.0-2/ChemoSpec/MD5                        |  105 ++++++------
 ChemoSpec-2.0-2/ChemoSpec/NAMESPACE                  |    1 
 ChemoSpec-2.0-2/ChemoSpec/NEWS                       |   25 +++
 ChemoSpec-2.0-2/ChemoSpec/R/aovPCAscores.R           |    5 
 ChemoSpec-2.0-2/ChemoSpec/R/calcSN.R                 |    2 
 ChemoSpec-2.0-2/ChemoSpec/R/files2SpectraObject.R    |   71 ++++++--
 ChemoSpec-2.0-2/ChemoSpec/R/findTMS.R                |    8 
 ChemoSpec-2.0-2/ChemoSpec/R/hcaScores.R              |    8 
 ChemoSpec-2.0-2/ChemoSpec/R/hcaSpectra.R             |    9 -
 ChemoSpec-2.0-2/ChemoSpec/R/hmapSpectra.R            |    7 
 ChemoSpec-2.0-2/ChemoSpec/R/labelExtremes.R          |    5 
 ChemoSpec-2.0-2/ChemoSpec/R/mclustSpectra.R          |   11 -
 ChemoSpec-2.0-2/ChemoSpec/R/normSpectra.R            |    4 
 ChemoSpec-2.0-2/ChemoSpec/R/plot2Loadings.R          |    6 
 ChemoSpec-2.0-2/ChemoSpec/R/plotHCA.R                |    5 
 ChemoSpec-2.0-2/ChemoSpec/R/plotLoadings.R           |    9 -
 ChemoSpec-2.0-2/ChemoSpec/R/plotScores.R             |   21 +-
 ChemoSpec-2.0-2/ChemoSpec/R/plotScores3D.R           |    7 
 ChemoSpec-2.0-2/ChemoSpec/R/plotScoresDecoration.R   |    2 
 ChemoSpec-2.0-2/ChemoSpec/R/plotScree.R              |   16 -
 ChemoSpec-2.0-2/ChemoSpec/R/plotScree2.R             |   20 +-
 ChemoSpec-2.0-2/ChemoSpec/R/plotSpectra.R            |    4 
 ChemoSpec-2.0-2/ChemoSpec/R/readBrukerAscii.R        |only
 ChemoSpec-2.0-2/ChemoSpec/R/sPlotSpectra.R           |    8 
 ChemoSpec-2.0-2/ChemoSpec/R/specSurvey.R             |   22 --
 ChemoSpec-2.0-2/ChemoSpec/inst/doc/ChemoSpec.R       |  154 ++++++-------------
 ChemoSpec-2.0-2/ChemoSpec/inst/doc/ChemoSpec.Rnw     |   44 ++---
 ChemoSpec-2.0-2/ChemoSpec/inst/doc/ChemoSpec.pdf     |binary
 ChemoSpec-2.0-2/ChemoSpec/man/ChemoSpec-package.Rd   |    4 
 ChemoSpec-2.0-2/ChemoSpec/man/Spectra.Rd             |    2 
 ChemoSpec-2.0-2/ChemoSpec/man/aovPCA.Rd              |   10 -
 ChemoSpec-2.0-2/ChemoSpec/man/calcSN.Rd              |    5 
 ChemoSpec-2.0-2/ChemoSpec/man/classPCA.Rd            |    3 
 ChemoSpec-2.0-2/ChemoSpec/man/files2SpectraObject.Rd |    2 
 ChemoSpec-2.0-2/ChemoSpec/man/findTMS.Rd             |    6 
 ChemoSpec-2.0-2/ChemoSpec/man/groupNcolor.Rd         |    6 
 ChemoSpec-2.0-2/ChemoSpec/man/hcaScores.Rd           |   10 -
 ChemoSpec-2.0-2/ChemoSpec/man/hcaSpectra.Rd          |   12 -
 ChemoSpec-2.0-2/ChemoSpec/man/hmapSpectra.Rd         |   12 -
 ChemoSpec-2.0-2/ChemoSpec/man/mclustSpectra.Rd       |   12 -
 ChemoSpec-2.0-2/ChemoSpec/man/plot2Loadings.Rd       |    9 -
 ChemoSpec-2.0-2/ChemoSpec/man/plotHCA.Rd             |    5 
 ChemoSpec-2.0-2/ChemoSpec/man/plotLoadings.Rd        |    9 -
 ChemoSpec-2.0-2/ChemoSpec/man/plotScores.Rd          |   10 -
 ChemoSpec-2.0-2/ChemoSpec/man/plotScores3D.Rd        |   10 -
 ChemoSpec-2.0-2/ChemoSpec/man/plotScree.Rd           |   12 -
 ChemoSpec-2.0-2/ChemoSpec/man/plotSpectra.Rd         |   11 -
 ChemoSpec-2.0-2/ChemoSpec/man/readBrukerTxt.Rd       |    6 
 ChemoSpec-2.0-2/ChemoSpec/man/robPCA.Rd              |    3 
 ChemoSpec-2.0-2/ChemoSpec/man/sPlotSpectra.Rd        |   13 -
 ChemoSpec-2.0-2/ChemoSpec/man/specSurvey.Rd          |    8 
 ChemoSpec-2.0-2/ChemoSpec/vignettes/ChemoSpec.Rnw    |   44 ++---
 55 files changed, 383 insertions(+), 428 deletions(-)

More information about ChemoSpec at CRAN
Permanent link

New package STPGA with initial version 1.0
Package: STPGA
Type: Package
Title: Selection of Training Populations by Genetic Algorithm
Version: 1.0
Date: 2014-05-29
Author: Deniz Akdemir
Maintainer: Deniz Akdemir
Description: Can be utilized to select a test data calibrated training population in high dimensional prediction problems and assumes that the explanatory variables are observed for all of the individuals. Once a "good" training set is identified, the response variable can be obtained only for this set to build a model for predicting the response in the test set.
License: GPL-2
Packaged: 2014-05-31 10:46:30 UTC; denizakdemir
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-05-31 15:06:13

More information about STPGA at CRAN
Permanent link

New package pipeR with initial version 0.2-4
Package: pipeR
Type: Package
Title: Pipeline operators for R
Version: 0.2-4
Author: Kun Ren
Maintainer: Kun Ren
Description: Provides operators for chaining commands with various forward-piping mechanisms: first-argument piping, free piping, and lambda piping.
Depends: R (>= 2.14)
Date: 2014-05-31
Suggests: dplyr
Enhances: magrittr
License: MIT + file LICENSE
URL: http://renkun.me/pipeR, https://github.com/renkun-ken/pipeR
BugReports: https://github.com/renkun-ken/pipeR/issues
Packaged: 2014-05-31 07:01:04 UTC; Ken
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-05-31 15:06:15

More information about pipeR at CRAN
Permanent link

Package gdsfmt (with last version 1.0.4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-04-15 1.0.4
2014-03-19 1.0.3
2014-01-24 1.0.2
2014-01-07 1.0.1
2013-09-21 1.0.0
2013-08-24 0.9.15
2013-05-28 0.9.14
2013-05-20 0.9.13
2013-02-19 0.9.12
2013-01-26 0.9.11
2012-08-25 0.9.10
2012-05-18 0.9.9
2012-04-16 0.9.8
2012-03-17 0.9.7
2012-03-05 0.9.6
2011-08-10 0.9.5
2011-06-20 0.9.4
2011-05-03 0.9.3
2011-04-24 0.9.2
2011-01-09 0.9.1
2011-01-04 0.9

Permanent link
Package linkcomm (with last version 1.0-8) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-04-03 1.0-8
2013-05-29 1.0-7
2012-07-06 1.0-6
2012-06-01 1.0-5
2011-12-25 1.0-4
2011-07-23 1.0-3
2011-05-29 1.0-2
2011-04-30 1.0-1
2011-04-27 1.0-0

Permanent link
Package ljr (with last version 1.3-0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-11-01 1.3-0
2009-05-05 1.2-2
2008-05-08 1.2-0
2008-02-24 1.1-0
2007-07-16 1.0-1
2007-07-07 1.0-0

Permanent link
Package protoclust (with last version 1.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-07-25 1.3
2013-02-02 1.2
2011-07-07 1.0

Permanent link
Package timsac (with last version 1.3.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-07-24 1.3.0
2012-05-15 1.2.7
2012-03-05 1.2.6
2009-03-21 1.2.1
2007-07-07 1.1.3
2007-06-01 1.1.2

Permanent link
Package SNPRelate (with last version 0.9.19) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-12-19 0.9.19
2013-09-29 0.9.18
2013-09-05 0.9.17
2013-08-20 0.9.16
2013-06-09 0.9.15
2013-05-22 0.9.14
2013-02-26 0.9.13
2013-02-19 0.9.12
2013-01-31 0.9.11
2013-01-21 0.9.10
2013-01-05 0.9.9
2012-09-29 0.9.8
2012-08-30 0.9.7
2012-07-22 0.9.6
2012-04-25 0.9.5
2012-03-17 0.9.4
2012-03-05 0.9.3
2012-02-02 0.9.2
2011-08-13 0.9.1
2011-08-03 0.9.0

Permanent link
Package pgmm (with last version 1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-12-08 1.0

Permanent link
Package mugnet (with last version 1.02.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-12-11 1.02.0
2013-02-26 1.01.3
2013-01-09 1.01.2
2011-04-27 0.13.5
2010-08-11 0.13.2
2010-08-10 0.13.1
2010-05-06 0.08.0
2010-05-06 0.08.1

Permanent link
Package statmod updated to version 1.4.20 with previous version 1.4.19 dated 2014-04-13

Title: Statistical Modeling
Description: Various statistical modeling functions including growth curve comparisons, limiting dilution analysis, mixed linear models, heteroscedastic regression, Tweedie family generalized linear models, the inverse-Gaussian distribution and Gauss quadrature.
Author: Gordon Smyth [cre, aut], Yifang Hu [ctb], Peter Dunn [ctb], Belinda Phipson [ctb], Yunshun Chen [ctb]
Maintainer: Gordon Smyth

Diff between statmod versions 1.4.19 dated 2014-04-13 and 1.4.20 dated 2014-05-31

 statmod-1.4.19/statmod/inst/doc                      |only
 statmod-1.4.19/statmod/man/1Introduction.Rd          |only
 statmod-1.4.20/statmod/DESCRIPTION                   |   10 
 statmod-1.4.20/statmod/MD5                           |   19 -
 statmod-1.4.20/statmod/R/elda.R                      |    4 
 statmod-1.4.20/statmod/R/invgauss.R                  |  286 ++++++++++++++-----
 statmod-1.4.20/statmod/R/qres.R                      |   21 -
 statmod-1.4.20/statmod/inst/NEWS                     |only
 statmod-1.4.20/statmod/man/invgauss.Rd               |   67 +++-
 statmod-1.4.20/statmod/man/statmod.Rd                |only
 statmod-1.4.20/statmod/tests/statmod-Tests.R         |   12 
 statmod-1.4.20/statmod/tests/statmod-Tests.Rout.save |   31 +-
 12 files changed, 330 insertions(+), 120 deletions(-)

More information about statmod at CRAN
Permanent link

Package evtree (with last version 0.1-4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-11-26 0.1-4
2013-06-17 0.1-3
2012-04-11 0.1-2
2011-10-02 0.1-1
2011-09-30 0.1-0

Permanent link
Package dynpred (with last version 0.1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-11-03 0.1.1

Permanent link
Package BayesTree (with last version 0.3-1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2010-05-07 0.3-1.1
2009-05-24 0.3-1
2006-10-17 0.2-0

Permanent link
Package SpatialPack (with last version 0.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-06-15 0.2

Permanent link
Package CDS (with last version 0.1-0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-05-14 0.1-0

Permanent link
Package ANN (with last version 0.1.4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-07-02 0.1.4

Permanent link
Package RecordLinkage (with last version 0.4-1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-01-12 0.4-1
2011-09-12 0.3-5
2011-08-10 0.3-4
2011-07-02 0.3-3
2011-05-11 0.3-2
2011-03-24 0.3-1
2011-03-15 0.3-0
2011-02-15 0.2-6
2011-01-05 0.2-4
2010-09-28 0.2-3
2010-08-01 0.2-2
2010-04-12 0.2-0

Permanent link
Package POT (with last version 1.1-3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-11-06 1.1-3
2012-08-20 1.1-2
2011-06-22 1.1-1
2009-10-16 1.1-0
2009-02-10 1.0-9
2008-07-05 1.0-8
2008-04-03 1.0-7
2007-12-06 1.0-6
2007-10-30 1.0-5
2007-09-25 1.0-4
2007-08-25 1.0-3
2007-07-09 1.0-2
2007-03-30 1.0-1

Permanent link
Package cpm (with last version 1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-06-27 1.1
2012-02-06 1.0

Permanent link
Package SigWinR (with last version 1.0.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-10-30 1.0.2
2009-09-04 1.0.1
2009-06-16 1.0

Permanent link
Package qdap updated to version 2.0.0 with previous version 1.3.5 dated 2014-04-08

Title: Bridging the gap between qualitative data and quantitative analysis
Description: This package automates many of the tasks associated with quantitative discourse analysis of transcripts containing discourse including frequency counts of sentence types, words, sentences, turns of talk, syllables and other assorted analysis tasks. The package provides parsing tools for preparing transcript data. Many functions enable the user to aggregate data by any number of grouping variables, providing analysis and seamless integration with other R packages that undertake higher level analysis and visualization of text. This affords the user a more efficient and targeted analysis. qdap is designed for transcript analysis, however, many functions are applicable to other areas of Text Mining/Natural Language Processing.
Author: Bryan Goodrich [ctb], Dason Kurkiewicz [ctb], Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker

Diff between qdap versions 1.3.5 dated 2014-04-08 and 2.0.0 dated 2014-05-31

 qdap-1.3.5/qdap/R/hash.R                                  |only
 qdap-1.3.5/qdap/R/hms2sec.R                               |only
 qdap-1.3.5/qdap/R/id.R                                    |only
 qdap-1.3.5/qdap/R/list2df.R                               |only
 qdap-1.3.5/qdap/R/lookup.R                                |only
 qdap-1.3.5/qdap/R/mtabulate.R                             |only
 qdap-1.3.5/qdap/R/repo2github.R                           |only
 qdap-1.3.5/qdap/R/sec2hms.R                               |only
 qdap-1.3.5/qdap/R/text2color.R                            |only
 qdap-1.3.5/qdap/R/url_dl.R                                |only
 qdap-1.3.5/qdap/R/v_outer.R                               |only
 qdap-1.3.5/qdap/man/hash.Rd                               |only
 qdap-1.3.5/qdap/man/hms2sec.Rd                            |only
 qdap-1.3.5/qdap/man/id.Rd                                 |only
 qdap-1.3.5/qdap/man/list2df.Rd                            |only
 qdap-1.3.5/qdap/man/lookup.Rd                             |only
 qdap-1.3.5/qdap/man/mtabulate.Rd                          |only
 qdap-1.3.5/qdap/man/print.v_outer.Rd                      |only
 qdap-1.3.5/qdap/man/repo2github.Rd                        |only
 qdap-1.3.5/qdap/man/sec2hms.Rd                            |only
 qdap-1.3.5/qdap/man/text2color.Rd                         |only
 qdap-1.3.5/qdap/man/url_dl.Rd                             |only
 qdap-1.3.5/qdap/man/v_outer.Rd                            |only
 qdap-2.0.0/qdap/DESCRIPTION                               |   22 
 qdap-2.0.0/qdap/MD5                                       |  830 ++++++--------
 qdap-2.0.0/qdap/NAMESPACE                                 |   58 
 qdap-2.0.0/qdap/NEWS                                      |   81 +
 qdap-2.0.0/qdap/R/Network.R                               |only
 qdap-2.0.0/qdap/R/Search.R                                |    2 
 qdap-2.0.0/qdap/R/Title.R                                 |    2 
 qdap-2.0.0/qdap/R/adjacency_matrix.R                      |    2 
 qdap-2.0.0/qdap/R/all_words.R                             |    9 
 qdap-2.0.0/qdap/R/automated_readability_index.R           |   21 
 qdap-2.0.0/qdap/R/cm_code.blank.R                         |    1 
 qdap-2.0.0/qdap/R/cm_code.combine.R                       |    1 
 qdap-2.0.0/qdap/R/cm_code.exclude.R                       |    1 
 qdap-2.0.0/qdap/R/cm_code.overlap.R                       |    1 
 qdap-2.0.0/qdap/R/cm_distance.R                           |    6 
 qdap-2.0.0/qdap/R/cm_time.temp.R                          |    2 
 qdap-2.0.0/qdap/R/cm_time2long.R                          |    1 
 qdap-2.0.0/qdap/R/cmspans.R                               |    7 
 qdap-2.0.0/qdap/R/colsplit2df.R                           |    2 
 qdap-2.0.0/qdap/R/common.R                                |    2 
 qdap-2.0.0/qdap/R/discourse_map.R                         |    8 
 qdap-2.0.0/qdap/R/dissimilarity.R                         |   38 
 qdap-2.0.0/qdap/R/dist_tab.R                              |   42 
 qdap-2.0.0/qdap/R/diversity.R                             |    4 
 qdap-2.0.0/qdap/R/end_mark.R                              |    8 
 qdap-2.0.0/qdap/R/formality.R                             |  243 +++-
 qdap-2.0.0/qdap/R/freq_terms.R                            |    1 
 qdap-2.0.0/qdap/R/gantt.R                                 |    7 
 qdap-2.0.0/qdap/R/gantt_rep.R                             |    4 
 qdap-2.0.0/qdap/R/gantt_wrap.R                            |    3 
 qdap-2.0.0/qdap/R/gradient_cloud.R                        |    1 
 qdap-2.0.0/qdap/R/htruncdf.R                              |    2 
 qdap-2.0.0/qdap/R/kullback_leibler.R                      |    7 
 qdap-2.0.0/qdap/R/multigsub.R                             |   78 +
 qdap-2.0.0/qdap/R/name2sex.R                              |    5 
 qdap-2.0.0/qdap/R/new_project.R                           |    6 
 qdap-2.0.0/qdap/R/ngrams.R                                |    2 
 qdap-2.0.0/qdap/R/phrase_net.R                            |    3 
 qdap-2.0.0/qdap/R/plot.cmspans.R                          |    2 
 qdap-2.0.0/qdap/R/polarity.R                              |  316 ++++-
 qdap-2.0.0/qdap/R/pos.R                                   |   92 -
 qdap-2.0.0/qdap/R/power.R                                 |only
 qdap-2.0.0/qdap/R/proportions.R                           |    2 
 qdap-2.0.0/qdap/R/qdap-package.R                          |   41 
 qdap-2.0.0/qdap/R/qheat.R                                 |    1 
 qdap-2.0.0/qdap/R/question_type.R                         |    5 
 qdap-2.0.0/qdap/R/rank_freq_plot.R                        |    1 
 qdap-2.0.0/qdap/R/replace_number.R                        |   11 
 qdap-2.0.0/qdap/R/scores.R                                |    2 
 qdap-2.0.0/qdap/R/sentSplit.R                             |    6 
 qdap-2.0.0/qdap/R/stemmer.R                               |    3 
 qdap-2.0.0/qdap/R/syllable_sum.R                          |   27 
 qdap-2.0.0/qdap/R/synonyms.R                              |   54 
 qdap-2.0.0/qdap/R/table_methods.R                         |    9 
 qdap-2.0.0/qdap/R/tdm.R                                   |   10 
 qdap-2.0.0/qdap/R/termco.R                                |   14 
 qdap-2.0.0/qdap/R/trans_cloud.R                           |    1 
 qdap-2.0.0/qdap/R/trans_context.R                         |    2 
 qdap-2.0.0/qdap/R/utils.R                                 |   27 
 qdap-2.0.0/qdap/R/visual.R                                |    2 
 qdap-2.0.0/qdap/R/wfm.R                                   |   23 
 qdap-2.0.0/qdap/R/word_associate.R                        |    2 
 qdap-2.0.0/qdap/R/word_cor.R                              |    6 
 qdap-2.0.0/qdap/R/word_count.R                            |   15 
 qdap-2.0.0/qdap/R/word_list.R                             |    2 
 qdap-2.0.0/qdap/R/word_network_plot.R                     |    1 
 qdap-2.0.0/qdap/R/word_proximity.R                        |    5 
 qdap-2.0.0/qdap/R/word_stats.R                            |    8 
 qdap-2.0.0/qdap/README.md                                 |    1 
 qdap-2.0.0/qdap/build/vignette.rds                        |binary
 qdap-2.0.0/qdap/data/DATA.SPLIT.rda                       |binary
 qdap-2.0.0/qdap/data/DATA.rda                             |binary
 qdap-2.0.0/qdap/data/DATA2.rda                            |binary
 qdap-2.0.0/qdap/data/env.syl.rda                          |only
 qdap-2.0.0/qdap/data/hamlet.rda                           |only
 qdap-2.0.0/qdap/data/mraja1.rda                           |binary
 qdap-2.0.0/qdap/data/mraja1spl.rda                        |binary
 qdap-2.0.0/qdap/data/pres_debate_raw2012.rda              |binary
 qdap-2.0.0/qdap/data/pres_debates2012.rda                 |binary
 qdap-2.0.0/qdap/data/raj.act.1.rda                        |binary
 qdap-2.0.0/qdap/data/raj.act.1POS.rda                     |binary
 qdap-2.0.0/qdap/data/raj.act.2.rda                        |binary
 qdap-2.0.0/qdap/data/raj.act.3.rda                        |binary
 qdap-2.0.0/qdap/data/raj.act.4.rda                        |binary
 qdap-2.0.0/qdap/data/raj.act.5.rda                        |binary
 qdap-2.0.0/qdap/data/raj.demographics.rda                 |binary
 qdap-2.0.0/qdap/data/raj.rda                              |binary
 qdap-2.0.0/qdap/data/rajPOS.rda                           |binary
 qdap-2.0.0/qdap/data/rajSPLIT.rda                         |binary
 qdap-2.0.0/qdap/data/raw.time.span.rda                    |binary
 qdap-2.0.0/qdap/data/sample.time.span.rda                 |binary
 qdap-2.0.0/qdap/inst/CITATION                             |    4 
 qdap-2.0.0/qdap/inst/doc/qdap_vignette.R                  |  657 +++--------
 qdap-2.0.0/qdap/inst/doc/qdap_vignette.Rmd                |  202 +--
 qdap-2.0.0/qdap/inst/doc/qdap_vignette.html               |  185 +--
 qdap-2.0.0/qdap/inst/doc/tm_package_compatibility.R       |  366 ++----
 qdap-2.0.0/qdap/inst/doc/tm_package_compatibility.Rnw     |    2 
 qdap-2.0.0/qdap/inst/doc/tm_package_compatibility.pdf     |binary
 qdap-2.0.0/qdap/man/Animate.Rd                            |   10 
 qdap-2.0.0/qdap/man/Animate.discourse_map.Rd              |   45 
 qdap-2.0.0/qdap/man/Animate.formality.Rd                  |   97 -
 qdap-2.0.0/qdap/man/Animate.gantt.Rd                      |   28 
 qdap-2.0.0/qdap/man/Animate.gantt_plot.Rd                 |   30 
 qdap-2.0.0/qdap/man/Animate.polarity.Rd                   |   78 -
 qdap-2.0.0/qdap/man/DATA.Rd                               |   11 
 qdap-2.0.0/qdap/man/DATA.SPLIT.Rd                         |   21 
 qdap-2.0.0/qdap/man/DATA2.Rd                              |   18 
 qdap-2.0.0/qdap/man/Dissimilarity.Rd                      |   42 
 qdap-2.0.0/qdap/man/Filter.Rd                             |   78 -
 qdap-2.0.0/qdap/man/NAer.Rd                               |   10 
 qdap-2.0.0/qdap/man/Network.Rd                            |only
 qdap-2.0.0/qdap/man/Network.formality.Rd                  |only
 qdap-2.0.0/qdap/man/Network.polarity.Rd                   |only
 qdap-2.0.0/qdap/man/Readability.Rd                        |  122 --
 qdap-2.0.0/qdap/man/Search.Rd                             |  119 --
 qdap-2.0.0/qdap/man/Title.Rd                              |    5 
 qdap-2.0.0/qdap/man/Trim.Rd                               |    6 
 qdap-2.0.0/qdap/man/Word_Frequency_Matrix.Rd              |  138 +-
 qdap-2.0.0/qdap/man/addNetwork.Rd                         |only
 qdap-2.0.0/qdap/man/adjacency_matrix.Rd                   |   28 
 qdap-2.0.0/qdap/man/all_words.Rd                          |   48 
 qdap-2.0.0/qdap/man/bag_o_words.Rd                        |   22 
 qdap-2.0.0/qdap/man/beg2char.Rd                           |   17 
 qdap-2.0.0/qdap/man/blank2NA.Rd                           |    8 
 qdap-2.0.0/qdap/man/bracketX.Rd                           |   86 -
 qdap-2.0.0/qdap/man/capitalizer.Rd                        |   24 
 qdap-2.0.0/qdap/man/clean.Rd                              |    6 
 qdap-2.0.0/qdap/man/cm_2long.Rd                           |   30 
 qdap-2.0.0/qdap/man/cm_code.blank.Rd                      |   37 
 qdap-2.0.0/qdap/man/cm_code.combine.Rd                    |   22 
 qdap-2.0.0/qdap/man/cm_code.exclude.Rd                    |   30 
 qdap-2.0.0/qdap/man/cm_code.overlap.Rd                    |   22 
 qdap-2.0.0/qdap/man/cm_code.transform.Rd                  |   37 
 qdap-2.0.0/qdap/man/cm_combine.dummy.Rd                   |   27 
 qdap-2.0.0/qdap/man/cm_df.fill.Rd                         |   42 
 qdap-2.0.0/qdap/man/cm_df.temp.Rd                         |   48 
 qdap-2.0.0/qdap/man/cm_df.transcript.Rd                   |   54 
 qdap-2.0.0/qdap/man/cm_df2long.Rd                         |   53 
 qdap-2.0.0/qdap/man/cm_distance.Rd                        |  186 +--
 qdap-2.0.0/qdap/man/cm_dummy2long.Rd                      |   10 
 qdap-2.0.0/qdap/man/cm_long2dummy.Rd                      |   24 
 qdap-2.0.0/qdap/man/cm_range.temp.Rd                      |   19 
 qdap-2.0.0/qdap/man/cm_range2long.Rd                      |   39 
 qdap-2.0.0/qdap/man/cm_time.temp.Rd                       |   33 
 qdap-2.0.0/qdap/man/cm_time2long.Rd                       |   37 
 qdap-2.0.0/qdap/man/colSplit.Rd                           |   17 
 qdap-2.0.0/qdap/man/colcomb2class.Rd                      |   35 
 qdap-2.0.0/qdap/man/colsplit2df.Rd                        |   58 
 qdap-2.0.0/qdap/man/common.Rd                             |   20 
 qdap-2.0.0/qdap/man/common.list.Rd                        |   13 
 qdap-2.0.0/qdap/man/condense.Rd                           |   14 
 qdap-2.0.0/qdap/man/counts.Rd                             |    8 
 qdap-2.0.0/qdap/man/counts.SMOG.Rd                        |    8 
 qdap-2.0.0/qdap/man/counts.automated_readability_index.Rd |   10 
 qdap-2.0.0/qdap/man/counts.character_table.Rd             |    5 
 qdap-2.0.0/qdap/man/counts.coleman_liau.Rd                |    8 
 qdap-2.0.0/qdap/man/counts.end_mark_by.Rd                 |    5 
 qdap-2.0.0/qdap/man/counts.flesch_kincaid.Rd              |    8 
 qdap-2.0.0/qdap/man/counts.formality.Rd                   |    5 
 qdap-2.0.0/qdap/man/counts.fry.Rd                         |    8 
 qdap-2.0.0/qdap/man/counts.linsear_write.Rd               |    8 
 qdap-2.0.0/qdap/man/counts.polarity.Rd                    |    8 
 qdap-2.0.0/qdap/man/counts.pos.Rd                         |    5 
 qdap-2.0.0/qdap/man/counts.pos_by.Rd                      |    5 
 qdap-2.0.0/qdap/man/counts.question_type.Rd               |    5 
 qdap-2.0.0/qdap/man/counts.termco.Rd                      |    5 
 qdap-2.0.0/qdap/man/counts.word_stats.Rd                  |    5 
 qdap-2.0.0/qdap/man/data_viewing.Rd                       |   61 -
 qdap-2.0.0/qdap/man/dir_map.Rd                            |   54 
 qdap-2.0.0/qdap/man/discourse_map.Rd                      |   58 
 qdap-2.0.0/qdap/man/dispersion_plot.Rd                    |   94 -
 qdap-2.0.0/qdap/man/dist_tab.Rd                           |   26 
 qdap-2.0.0/qdap/man/diversity.Rd                          |   41 
 qdap-2.0.0/qdap/man/duplicates.Rd                         |    9 
 qdap-2.0.0/qdap/man/end_inc.Rd                            |   17 
 qdap-2.0.0/qdap/man/end_mark.Rd                           |   61 -
 qdap-2.0.0/qdap/man/env.syl.Rd                            |only
 qdap-2.0.0/qdap/man/exclude.Rd                            |   15 
 qdap-2.0.0/qdap/man/formality.Rd                          |  110 +
 qdap-2.0.0/qdap/man/freq_terms.Rd                         |   30 
 qdap-2.0.0/qdap/man/gantt.Rd                              |   60 -
 qdap-2.0.0/qdap/man/gantt_plot.Rd                         |   47 
 qdap-2.0.0/qdap/man/gantt_rep.Rd                          |   43 
 qdap-2.0.0/qdap/man/gantt_wrap.Rd                         |  137 +-
 qdap-2.0.0/qdap/man/gradient_cloud.Rd                     |  102 -
 qdap-2.0.0/qdap/man/hamlet.Rd                             |only
 qdap-2.0.0/qdap/man/igraph_params.Rd                      |   21 
 qdap-2.0.0/qdap/man/imperative.Rd                         |   50 
 qdap-2.0.0/qdap/man/incomplete_replace.Rd                 |   18 
 qdap-2.0.0/qdap/man/is.global.Rd                          |    9 
 qdap-2.0.0/qdap/man/justification.Rd                      |   28 
 qdap-2.0.0/qdap/man/key_merge.Rd                          |   23 
 qdap-2.0.0/qdap/man/kullback_leibler.Rd                   |   25 
 qdap-2.0.0/qdap/man/mraja1.Rd                             |   17 
 qdap-2.0.0/qdap/man/mraja1spl.Rd                          |   21 
 qdap-2.0.0/qdap/man/multicsv.Rd                           |   73 -
 qdap-2.0.0/qdap/man/multigsub.Rd                          |   71 -
 qdap-2.0.0/qdap/man/multiscale.Rd                         |   26 
 qdap-2.0.0/qdap/man/name2sex.Rd                           |   42 
 qdap-2.0.0/qdap/man/new_project.Rd                        |  155 +-
 qdap-2.0.0/qdap/man/ngrams.Rd                             |   33 
 qdap-2.0.0/qdap/man/outlier_detect.Rd                     |   25 
 qdap-2.0.0/qdap/man/outlier_labeler.Rd                    |   13 
 qdap-2.0.0/qdap/man/paste2.Rd                             |   59 
 qdap-2.0.0/qdap/man/phrase_net.Rd                         |   31 
 qdap-2.0.0/qdap/man/plot.Network.Rd                       |only
 qdap-2.0.0/qdap/man/plot.SMOG.Rd                          |    5 
 qdap-2.0.0/qdap/man/plot.animated_discourse_map.Rd        |    8 
 qdap-2.0.0/qdap/man/plot.animated_formality.Rd            |    8 
 qdap-2.0.0/qdap/man/plot.animated_polarity.Rd             |    8 
 qdap-2.0.0/qdap/man/plot.automated_readability_index.Rd   |    5 
 qdap-2.0.0/qdap/man/plot.character_table.Rd               |   32 
 qdap-2.0.0/qdap/man/plot.cm_distance.Rd                   |   44 
 qdap-2.0.0/qdap/man/plot.cmspans.Rd                       |   13 
 qdap-2.0.0/qdap/man/plot.coleman_liau.Rd                  |    5 
 qdap-2.0.0/qdap/man/plot.discourse_map.Rd                 |    6 
 qdap-2.0.0/qdap/man/plot.diversity.Rd                     |    5 
 qdap-2.0.0/qdap/man/plot.end_mark_by.Rd                   |   10 
 qdap-2.0.0/qdap/man/plot.end_mark_by_count.Rd             |   10 
 qdap-2.0.0/qdap/man/plot.end_mark_by_preprocessed.Rd      |    8 
 qdap-2.0.0/qdap/man/plot.end_mark_by_proportion.Rd        |   10 
 qdap-2.0.0/qdap/man/plot.end_mark_by_score.Rd             |   10 
 qdap-2.0.0/qdap/man/plot.flesch_kincaid.Rd                |    5 
 qdap-2.0.0/qdap/man/plot.formality.Rd                     |   49 
 qdap-2.0.0/qdap/man/plot.formality_scores.Rd              |    5 
 qdap-2.0.0/qdap/man/plot.freq_terms.Rd                    |   12 
 qdap-2.0.0/qdap/man/plot.gantt.Rd                         |   14 
 qdap-2.0.0/qdap/man/plot.kullback_leibler.Rd              |    7 
 qdap-2.0.0/qdap/man/plot.linsear_write.Rd                 |   10 
 qdap-2.0.0/qdap/man/plot.linsear_write_count.Rd           |    5 
 qdap-2.0.0/qdap/man/plot.linsear_write_scores.Rd          |   11 
 qdap-2.0.0/qdap/man/plot.polarity.Rd                      |   84 -
 qdap-2.0.0/qdap/man/plot.polarity_count.Rd                |   84 -
 qdap-2.0.0/qdap/man/plot.polarity_score.Rd                |   14 
 qdap-2.0.0/qdap/man/plot.pos.Rd                           |    5 
 qdap-2.0.0/qdap/man/plot.pos_by.Rd                        |   26 
 qdap-2.0.0/qdap/man/plot.pos_preprocessed.Rd              |    5 
 qdap-2.0.0/qdap/man/plot.question_type.Rd                 |   26 
 qdap-2.0.0/qdap/man/plot.question_type_preprocessed.Rd    |    6 
 qdap-2.0.0/qdap/man/plot.readability_count.Rd             |    7 
 qdap-2.0.0/qdap/man/plot.readability_score.Rd             |   25 
 qdap-2.0.0/qdap/man/plot.rmgantt.Rd                       |   12 
 qdap-2.0.0/qdap/man/plot.sent_split.Rd                    |   15 
 qdap-2.0.0/qdap/man/plot.sum_cmspans.Rd                   |   48 
 qdap-2.0.0/qdap/man/plot.sums_gantt.Rd                    |   14 
 qdap-2.0.0/qdap/man/plot.table_count.Rd                   |   12 
 qdap-2.0.0/qdap/man/plot.table_proportion.Rd              |   12 
 qdap-2.0.0/qdap/man/plot.table_score.Rd                   |   12 
 qdap-2.0.0/qdap/man/plot.termco.Rd                        |   25 
 qdap-2.0.0/qdap/man/plot.weighted_wfm.Rd                  |   29 
 qdap-2.0.0/qdap/man/plot.wfdf.Rd                          |    6 
 qdap-2.0.0/qdap/man/plot.wfm.Rd                           |   29 
 qdap-2.0.0/qdap/man/plot.word_cor.Rd                      |   35 
 qdap-2.0.0/qdap/man/plot.word_proximity.Rd                |   21 
 qdap-2.0.0/qdap/man/plot.word_stats.Rd                    |   14 
 qdap-2.0.0/qdap/man/plot.word_stats_counts.Rd             |    7 
 qdap-2.0.0/qdap/man/polarity.Rd                           |  276 ++--
 qdap-2.0.0/qdap/man/pos.Rd                                |  146 +-
 qdap-2.0.0/qdap/man/potential_NA.Rd                       |   16 
 qdap-2.0.0/qdap/man/power.Rd                              |only
 qdap-2.0.0/qdap/man/preprocessed.Rd                       |   17 
 qdap-2.0.0/qdap/man/preprocessed.end_mark_by.Rd           |    5 
 qdap-2.0.0/qdap/man/preprocessed.formality.Rd             |    5 
 qdap-2.0.0/qdap/man/preprocessed.pos.Rd                   |    5 
 qdap-2.0.0/qdap/man/preprocessed.pos_by.Rd                |    5 
 qdap-2.0.0/qdap/man/preprocessed.question_type.Rd         |    5 
 qdap-2.0.0/qdap/man/pres_debate_raw2012.Rd                |   10 
 qdap-2.0.0/qdap/man/pres_debates2012.Rd                   |   13 
 qdap-2.0.0/qdap/man/print.Dissimilarity.Rd                |    7 
 qdap-2.0.0/qdap/man/print.Network.Rd                      |only
 qdap-2.0.0/qdap/man/print.SMOG.Rd                         |    8 
 qdap-2.0.0/qdap/man/print.adjacency_matrix.Rd             |    5 
 qdap-2.0.0/qdap/man/print.all_words.Rd                    |    5 
 qdap-2.0.0/qdap/man/print.animated_discourse_map.Rd       |   16 
 qdap-2.0.0/qdap/man/print.animated_formality.Rd           |   34 
 qdap-2.0.0/qdap/man/print.animated_polarity.Rd            |   34 
 qdap-2.0.0/qdap/man/print.automated_readability_index.Rd  |    8 
 qdap-2.0.0/qdap/man/print.boolean_qdap.Rd                 |    5 
 qdap-2.0.0/qdap/man/print.character_table.Rd              |   24 
 qdap-2.0.0/qdap/man/print.cm_distance.Rd                  |   38 
 qdap-2.0.0/qdap/man/print.coleman_liau.Rd                 |    8 
 qdap-2.0.0/qdap/man/print.colsplit2df.Rd                  |    5 
 qdap-2.0.0/qdap/man/print.discourse_map.Rd                |   11 
 qdap-2.0.0/qdap/man/print.diversity.Rd                    |    7 
 qdap-2.0.0/qdap/man/print.end_mark_by.Rd                  |    5 
 qdap-2.0.0/qdap/man/print.end_mark_by_preprocessed.Rd     |    5 
 qdap-2.0.0/qdap/man/print.flesch_kincaid.Rd               |    8 
 qdap-2.0.0/qdap/man/print.formality.Rd                    |    9 
 qdap-2.0.0/qdap/man/print.formality_scores.Rd             |    5 
 qdap-2.0.0/qdap/man/print.fry.Rd                          |   25 
 qdap-2.0.0/qdap/man/print.kullback_leibler.Rd             |    7 
 qdap-2.0.0/qdap/man/print.linsear_write.Rd                |    8 
 qdap-2.0.0/qdap/man/print.linsear_write_count.Rd          |    7 
 qdap-2.0.0/qdap/man/print.linsear_write_scores.Rd         |    7 
 qdap-2.0.0/qdap/man/print.ngrams.Rd                       |    5 
 qdap-2.0.0/qdap/man/print.phrase_net.Rd                   |    9 
 qdap-2.0.0/qdap/man/print.polarity.Rd                     |    8 
 qdap-2.0.0/qdap/man/print.polarity_count.Rd               |    7 
 qdap-2.0.0/qdap/man/print.polarity_score.Rd               |    8 
 qdap-2.0.0/qdap/man/print.pos.Rd                          |   21 
 qdap-2.0.0/qdap/man/print.pos_by.Rd                       |   21 
 qdap-2.0.0/qdap/man/print.pos_preprocessed.Rd             |    5 
 qdap-2.0.0/qdap/man/print.qdapProj.Rd                     |    5 
 qdap-2.0.0/qdap/man/print.qdap_context.Rd                 |   30 
 qdap-2.0.0/qdap/man/print.question_type.Rd                |    5 
 qdap-2.0.0/qdap/man/print.question_type_preprocessed.Rd   |    5 
 qdap-2.0.0/qdap/man/print.readability_count.Rd            |    7 
 qdap-2.0.0/qdap/man/print.readability_score.Rd            |    8 
 qdap-2.0.0/qdap/man/print.sent_split.Rd                   |    5 
 qdap-2.0.0/qdap/man/print.sub_holder.Rd                   |only
 qdap-2.0.0/qdap/man/print.sum_cmspans.Rd                  |    9 
 qdap-2.0.0/qdap/man/print.sums_gantt.Rd                   |    5 
 qdap-2.0.0/qdap/man/print.table_count.Rd                  |    5 
 qdap-2.0.0/qdap/man/print.table_proportion.Rd             |    5 
 qdap-2.0.0/qdap/man/print.table_score.Rd                  |    5 
 qdap-2.0.0/qdap/man/print.termco.Rd                       |   21 
 qdap-2.0.0/qdap/man/print.trunc.Rd                        |    5 
 qdap-2.0.0/qdap/man/print.wfm.Rd                          |   13 
 qdap-2.0.0/qdap/man/print.wfm_summary.Rd                  |    5 
 qdap-2.0.0/qdap/man/print.word_associate.Rd               |    5 
 qdap-2.0.0/qdap/man/print.word_cor.Rd                     |    7 
 qdap-2.0.0/qdap/man/print.word_list.Rd                    |    5 
 qdap-2.0.0/qdap/man/print.word_proximity.Rd               |    7 
 qdap-2.0.0/qdap/man/print.word_stats.Rd                   |    9 
 qdap-2.0.0/qdap/man/print.word_stats_counts.Rd            |    5 
 qdap-2.0.0/qdap/man/prop.Rd                               |   22 
 qdap-2.0.0/qdap/man/proportions.Rd                        |   11 
 qdap-2.0.0/qdap/man/proportions.character_table.Rd        |    5 
 qdap-2.0.0/qdap/man/proportions.end_mark_by.Rd            |    5 
 qdap-2.0.0/qdap/man/proportions.formality.Rd              |    5 
 qdap-2.0.0/qdap/man/proportions.pos.Rd                    |    5 
 qdap-2.0.0/qdap/man/proportions.pos_by.Rd                 |    5 
 qdap-2.0.0/qdap/man/proportions.question_type.Rd          |    5 
 qdap-2.0.0/qdap/man/proportions.termco.Rd                 |    5 
 qdap-2.0.0/qdap/man/qcombine.Rd                           |   18 
 qdap-2.0.0/qdap/man/qcv.Rd                                |   36 
 qdap-2.0.0/qdap/man/qdap.Rd                               |   19 
 qdap-2.0.0/qdap/man/qheat.Rd                              |  100 -
 qdap-2.0.0/qdap/man/qprep.Rd                              |   80 -
 qdap-2.0.0/qdap/man/qtheme.Rd                             |only
 qdap-2.0.0/qdap/man/question_type.Rd                      |  141 +-
 qdap-2.0.0/qdap/man/raj.Rd                                |   14 
 qdap-2.0.0/qdap/man/raj.act.1.Rd                          |    7 
 qdap-2.0.0/qdap/man/raj.act.1POS.Rd                       |   34 
 qdap-2.0.0/qdap/man/raj.act.2.Rd                          |    7 
 qdap-2.0.0/qdap/man/raj.act.3.Rd                          |    7 
 qdap-2.0.0/qdap/man/raj.act.4.Rd                          |    7 
 qdap-2.0.0/qdap/man/raj.act.5.Rd                          |    7 
 qdap-2.0.0/qdap/man/raj.demographics.Rd                   |   16 
 qdap-2.0.0/qdap/man/rajPOS.Rd                             |   19 
 qdap-2.0.0/qdap/man/rajSPLIT.Rd                           |   21 
 qdap-2.0.0/qdap/man/rank_freq_plot.Rd                     |   90 -
 qdap-2.0.0/qdap/man/raw.time.span.Rd                      |    1 
 qdap-2.0.0/qdap/man/read.transcript.Rd                    |  132 +-
 qdap-2.0.0/qdap/man/replace_abbreviation.Rd               |   22 
 qdap-2.0.0/qdap/man/replace_contraction.Rd                |   27 
 qdap-2.0.0/qdap/man/replace_number.Rd                     |   20 
 qdap-2.0.0/qdap/man/replace_symbol.Rd                     |   32 
 qdap-2.0.0/qdap/man/replacer.Rd                           |   14 
 qdap-2.0.0/qdap/man/rm_row.Rd                             |   46 
 qdap-2.0.0/qdap/man/rm_stopwords.Rd                       |   90 -
 qdap-2.0.0/qdap/man/rm_url.Rd                             |   23 
 qdap-2.0.0/qdap/man/sample.time.span.Rd                   |   17 
 qdap-2.0.0/qdap/man/scores.Rd                             |    9 
 qdap-2.0.0/qdap/man/scores.SMOG.Rd                        |    8 
 qdap-2.0.0/qdap/man/scores.automated_readability_index.Rd |    8 
 qdap-2.0.0/qdap/man/scores.character_table.Rd             |    5 
 qdap-2.0.0/qdap/man/scores.coleman_liau.Rd                |    8 
 qdap-2.0.0/qdap/man/scores.end_mark_by.Rd                 |    5 
 qdap-2.0.0/qdap/man/scores.flesch_kincaid.Rd              |    8 
 qdap-2.0.0/qdap/man/scores.formality.Rd                   |    5 
 qdap-2.0.0/qdap/man/scores.fry.Rd                         |    8 
 qdap-2.0.0/qdap/man/scores.linsear_write.Rd               |    8 
 qdap-2.0.0/qdap/man/scores.polarity.Rd                    |    8 
 qdap-2.0.0/qdap/man/scores.pos_by.Rd                      |    5 
 qdap-2.0.0/qdap/man/scores.question_type.Rd               |    5 
 qdap-2.0.0/qdap/man/scores.termco.Rd                      |    5 
 qdap-2.0.0/qdap/man/scores.word_stats.Rd                  |    5 
 qdap-2.0.0/qdap/man/scrubber.Rd                           |   25 
 qdap-2.0.0/qdap/man/sentSplit.Rd                          |  113 -
 qdap-2.0.0/qdap/man/space_fill.Rd                         |   46 
 qdap-2.0.0/qdap/man/spaste.Rd                             |   15 
 qdap-2.0.0/qdap/man/speakerSplit.Rd                       |   22 
 qdap-2.0.0/qdap/man/stemmer.Rd                            |   75 -
 qdap-2.0.0/qdap/man/strWrap.Rd                            |   22 
 qdap-2.0.0/qdap/man/strip.Rd                              |   31 
 qdap-2.0.0/qdap/man/summary.cmspans.Rd                    |   59 
 qdap-2.0.0/qdap/man/summary.wfdf.Rd                       |   16 
 qdap-2.0.0/qdap/man/summary.wfm.Rd                        |   16 
 qdap-2.0.0/qdap/man/syllabication.Rd                      |   62 -
 qdap-2.0.0/qdap/man/synonyms.Rd                           |   67 -
 qdap-2.0.0/qdap/man/t.DocumentTermMatrix.Rd               |    5 
 qdap-2.0.0/qdap/man/t.TermDocumentMatrix.Rd               |    5 
 qdap-2.0.0/qdap/man/tdm.Rd                                |  169 +-
 qdap-2.0.0/qdap/man/termco.Rd                             |  192 +--
 qdap-2.0.0/qdap/man/termco_c.Rd                           |   55 
 qdap-2.0.0/qdap/man/tot_plot.Rd                           |   95 -
 qdap-2.0.0/qdap/man/trans_cloud.Rd                        |  129 --
 qdap-2.0.0/qdap/man/trans_context.Rd                      |   38 
 qdap-2.0.0/qdap/man/trans_venn.Rd                         |   77 -
 qdap-2.0.0/qdap/man/visual.Rd                             |   14 
 qdap-2.0.0/qdap/man/visual.discourse_map.Rd               |    8 
 qdap-2.0.0/qdap/man/word_associate.Rd                     |  256 ++--
 qdap-2.0.0/qdap/man/word_cor.Rd                           |   51 
 qdap-2.0.0/qdap/man/word_count.Rd                         |   92 -
 qdap-2.0.0/qdap/man/word_diff_list.Rd                     |   58 
 qdap-2.0.0/qdap/man/word_list.Rd                          |   68 -
 qdap-2.0.0/qdap/man/word_network_plot.Rd                  |  127 --
 qdap-2.0.0/qdap/man/word_proximity.Rd                     |   92 -
 qdap-2.0.0/qdap/man/word_stats.Rd                         |  145 +-
 qdap-2.0.0/qdap/vignettes/qdap_vignette.Rmd               |  202 +--
 qdap-2.0.0/qdap/vignettes/tm_package_compatibility.Rnw    |    2 
 435 files changed, 6459 insertions(+), 6582 deletions(-)

More information about qdap at CRAN
Permanent link

Package knitcitations updated to version 0.6-2 with previous version 0.6-0 dated 2014-05-29

Title: Citations for knitr markdown files
Description: knitcitations provides the ability to create dynamic citations in which the bibliographic information is pulled from the web rather than having to be entered into a local database such as bibtex ahead of time. Knitcitations is primarily aimed at authoring in the R markdown format, and can provide outputs for web-based authoring such as linked text and tooltips over inline citations. Cite using a DOI, URL, or bibtex file key. See the package URL for details.
Author: Carl Boettiger [aut, cre]
Maintainer: Carl Boettiger

Diff between knitcitations versions 0.6-0 dated 2014-05-29 and 0.6-2 dated 2014-05-31

 knitcitations-0.6-0/knitcitations/man/authoryear_p.Rd   |only
 knitcitations-0.6-0/knitcitations/man/authoryear_t.Rd   |only
 knitcitations-0.6-2/knitcitations/DESCRIPTION           |    6 -
 knitcitations-0.6-2/knitcitations/MD5                   |   24 +---
 knitcitations-0.6-2/knitcitations/NEWS                  |   14 ++
 knitcitations-0.6-2/knitcitations/R/bibliography.R      |   32 ++++-
 knitcitations-0.6-2/knitcitations/R/cite_options.R      |    8 -
 knitcitations-0.6-2/knitcitations/R/citep.R             |   15 +-
 knitcitations-0.6-2/knitcitations/R/citet.R             |   50 ++++----
 knitcitations-0.6-2/knitcitations/R/inline_formats.R    |   94 ++++++++--------
 knitcitations-0.6-2/knitcitations/inst/doc/tutorial.pdf |binary
 knitcitations-0.6-2/knitcitations/man/bibliography.Rd   |    2 
 knitcitations-0.6-2/knitcitations/man/cite_options.Rd   |   10 +
 knitcitations-0.6-2/knitcitations/man/citep.Rd          |    5 
 14 files changed, 153 insertions(+), 107 deletions(-)

More information about knitcitations at CRAN
Permanent link

Package taRifx.geo updated to version 1.0.6 with previous version 1.0.4 dated 2012-08-04

Title: Collection of various spatial functions
Description: A collection of miscellaneous spatial object manipulation functions
Author: Ari B. Friedman
Maintainer: Ari B. Friedman

Diff between taRifx.geo versions 1.0.4 dated 2012-08-04 and 1.0.6 dated 2014-05-31

 taRifx.geo-1.0.4/taRifx.geo/demo                                    |only
 taRifx.geo-1.0.6/taRifx.geo/ChangeLog                               |    7 
 taRifx.geo-1.0.6/taRifx.geo/DESCRIPTION                             |   18 
 taRifx.geo-1.0.6/taRifx.geo/MD5                                     |   39 
 taRifx.geo-1.0.6/taRifx.geo/NAMESPACE                               |   26 
 taRifx.geo-1.0.6/taRifx.geo/R/Contributed.R                         |  262 ++++-
 taRifx.geo-1.0.6/taRifx.geo/R/R-GIS.R                               |  492 +++++++++-
 taRifx.geo-1.0.6/taRifx.geo/R/data.R                                |only
 taRifx.geo-1.0.6/taRifx.geo/README                                  |only
 taRifx.geo-1.0.6/taRifx.geo/data                                    |only
 taRifx.geo-1.0.6/taRifx.geo/inst                                    |only
 taRifx.geo-1.0.6/taRifx.geo/man/IDs.Rd                              |only
 taRifx.geo-1.0.6/taRifx.geo/man/Srs1.Rd                             |only
 taRifx.geo-1.0.6/taRifx.geo/man/as.SpatialPolygons.bbox.Rd          |only
 taRifx.geo-1.0.6/taRifx.geo/man/cleanLatLon.Rd                      |    6 
 taRifx.geo-1.0.6/taRifx.geo/man/clipToExtent.Rd                     |only
 taRifx.geo-1.0.6/taRifx.geo/man/countPointsInPolys.Rd               |   10 
 taRifx.geo-1.0.6/taRifx.geo/man/gGeoCode.Rd                         |   47 
 taRifx.geo-1.0.6/taRifx.geo/man/geocode.Rd                          |only
 taRifx.geo-1.0.6/taRifx.geo/man/georoute.Rd                         |only
 taRifx.geo-1.0.6/taRifx.geo/man/interpolateAndApplyWithinSpatial.Rd |only
 taRifx.geo-1.0.6/taRifx.geo/man/interpolatePolyPoint.Rd             |only
 taRifx.geo-1.0.6/taRifx.geo/man/interpolateWithinSingleSpatial.Rd   |only
 taRifx.geo-1.0.6/taRifx.geo/man/lineDist.Rd                         |    7 
 taRifx.geo-1.0.6/taRifx.geo/man/merge-methods.Rd                    |only
 taRifx.geo-1.0.6/taRifx.geo/man/overlayPolyPoly.Rd                  |only
 taRifx.geo-1.0.6/taRifx.geo/man/rbind.SpatialPolygonsDataFrame.Rd   |only
 taRifx.geo-1.0.6/taRifx.geo/man/states.Rd                           |only
 28 files changed, 753 insertions(+), 161 deletions(-)

More information about taRifx.geo at CRAN
Permanent link

New package pbo with initial version 1.3.4
Package: pbo
Type: Package
Title: Probability of Backtest Overfitting
Version: 1.3.4
Date: 2014-05-18
Author: Matt Barry
Maintainer: Matt Barry
Description: Following the method of Bailey et al., computes for a collection of candidate models the probability of backtest overfitting, the performance degradation and probability of loss, and the stochastic dominance.
License: MIT + file LICENSE
URL: https://github.com/mrbcuda/pbo
BugReports: https://github.com/mrbcuda/pbo/issues
Depends: utils, lattice
Suggests: PerformanceAnalytics, foreach, grid, latticeExtra, testthat, doParallel, knitr
VignetteBuilder: knitr
Packaged: 2014-05-30 19:22:18 UTC; mrb
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-05-31 01:49:51

More information about pbo at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.