Wed, 04 Jun 2014

Package sas7bdat updated to version 0.5 with previous version 0.4 dated 2014-03-06

Title: SAS Database Reader (experimental)
Description: Read SAS files in the sas7bdat data format.
Author: Matt Shotwell
Maintainer: Matt Shotwell

Diff between sas7bdat versions 0.4 dated 2014-03-06 and 0.5 dated 2014-06-04

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Package nleqslv updated to version 2.2 with previous version 2.1.1 dated 2014-02-05

Title: Solve systems of non linear equations
Description: Solve a system of non linear equations using a Broyden or a Newton method with a choice of global strategies such as line search and trust region. There are options for using a numerical or user supplied Jacobian and for specifying that a numerical Jacobian is banded.
Author: Berend Hasselman
Maintainer: Berend Hasselman

Diff between nleqslv versions 2.1.1 dated 2014-02-05 and 2.2 dated 2014-06-04

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Package GIGrvg updated to version 0.3 with previous version 0.2 dated 2014-02-07

Title: Random variate generator for the GIG distribution
Description: Random variate generator for the GIG distribution
Author: Josef Leydold and Wolfgang Hormann
Maintainer: Josef Leydold

Diff between GIGrvg versions 0.2 dated 2014-02-07 and 0.3 dated 2014-06-04

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Package agRee updated to version 0.3-1 with previous version 0.2-2 dated 2013-07-23

Title: Various Methods for Measuring Agreement.
Description: Plots for visualization and point and interval estimates for different metrics of agreement.
Author: Dai Feng
Maintainer: Dai Feng

Diff between agRee versions 0.2-2 dated 2013-07-23 and 0.3-1 dated 2014-06-04

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New package linkcomm with initial version 1.0-9
Package: linkcomm
Type: Package
Title: Tools for Generating, Visualizing, and Analysing Link Communities in Networks
Version: 1.0-9
Date: 2011-05-27
Author: Alex T. Kalinka , with contributions from Alain Guenoche
Maintainer: Alex T. Kalinka
Description: Link communities reveal the nested and overlapping structure in networks, and uncover the key nodes that form connections to multiple communities. linkcomm provides a set of tools for generating, visualizing, and analysing link communities in networks of arbitrary size and type. The linkcomm package also includes tools for generating, visualizing, and analysing Overlapping Cluster Generator (OCG) communities.
Depends: igraph, RColorBrewer
Imports: dynamicTreeCut, grid, utils
Suggests: fastcluster
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
Packaged: 2014-06-04 11:54:05 UTC; alexk
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-06-04 16:20:43

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Package kequate updated to version 1.4.0 with previous version 1.3.2 dated 2013-10-10

Title: The kernel method of test equating
Description: Implements the kernel method of test equating using the CB, EG, SG, NEAT CE/PSE and NEC designs, supporting gaussian, logistic and uniform kernels and unsmoothed and pre-smoothed input data.
Author: Bjorn Andersson, Kenny Branberg and Marie Wiberg
Maintainer: Bjorn Andersson

Diff between kequate versions 1.3.2 dated 2013-10-10 and 1.4.0 dated 2014-06-04

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Package catR updated to version 3.1 with previous version 3.0 dated 2014-04-25

Title: Procedures to generate IRT adaptive tests (CAT)
Description: The catR package allows the generation of response patterns under computerized adaptive testing (CAT) framework, with the choice of several starting rules, next item selection routines, stopping rules and ability estimators. Control methods for item exposure and content balancing are also included.
Author: David Magis (U Liege, Belgium), Gilles Raiche (UQAM, Canada), Juan Ramon Barrada (U Zaragoza, Spain)
Maintainer: David Magis

Diff between catR versions 3.0 dated 2014-04-25 and 3.1 dated 2014-06-04

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Package sybil updated to version 1.2.6 with previous version 1.2.5 dated 2013-11-28

Title: sybil - Efficient Constrained Based Modelling in R
Description: The package sybil is a Systems Biology Library for R, implementing algorithms for constraint based analyses of metabolic networks (e.g. flux-balance analysis (FBA), minimization of metabolic adjustment (MOMA), regulatory on/off minimization (ROOM), robustness analysis and flux variability analysis).
Author: Gabriel Gelius-Dietrich [aut, cre], C. Jonathan Fritzemeier [ctb], Rajen Piernikarczyk [ctb], Marc Andre Daxer [ctb], Benjamin Braasch [ctb], Abdelmoneim Desouki [ctb], Martin J. Lercher [ctb]
Maintainer: Gabriel Gelius-Dietrich

Diff between sybil versions 1.2.5 dated 2013-11-28 and 1.2.6 dated 2014-06-04

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Package secrdesign updated to version 2.1.3 with previous version 2.1.2 dated 2014-05-02

Title: Sampling Design for Spatially Explicit Capture--Recapture
Description: Tools for designing spatially explicit capture--recapture studies of animal populations (primarily a simulation manager for package secr)
Author: Murray Efford
Maintainer: Murray Efford

Diff between secrdesign versions 2.1.2 dated 2014-05-02 and 2.1.3 dated 2014-06-04

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Package ChargeTransport updated to version 1.0.2 with previous version 1.0.1 dated 2014-03-24

Title: Charge Transfer Rates and Charge Carrier Mobilities
Description: This package provides functions to compute Marcus, Marcus-Levich-Jortner or Landau-Zener charge transfer rates. These rates can then be used to perform kinetic Monte Carlo simulations to estimate charge carrier mobilities in molecular materials. The preparation of this package was supported by the the Fondazione Cariplo (PLENOS project, ref. 2011-0349).
Author: Julien Idé and Guido Raos
Maintainer: Julien Idé

Diff between ChargeTransport versions 1.0.1 dated 2014-03-24 and 1.0.2 dated 2014-06-04

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Package caret updated to version 6.0-30 with previous version 6.0-29 dated 2014-05-28

Title: Classification and Regression Training
Description: Misc functions for training and plotting classification and regression models
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre Williams, Chris Keefer, Allan Engelhardt, Tony Cooper, Zachary Mayer and the R Core Team
Maintainer: Max Kuhn

Diff between caret versions 6.0-29 dated 2014-05-28 and 6.0-30 dated 2014-06-04

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New package cAIC4 with initial version 0.1
Package: cAIC4
Type: Package
Title: Conditional Akaike information criterion for lme4
Version: 0.1
Date: 2014-05-23
Author: Benjamin Saefken and David Ruegamer, with contributions from Sonja Greven and Thomas Kneib
Maintainer: Benjamin Saefken
Depends: lme4(>= 0.999375-31), methods, Matrix
Suggests: gamm4
Description: Provides functions for the estimation of the conditional Akaike information in Generalized Mixed-effects models fitted with (g)lmer form lme4.
License: GPL (>= 2)
Packaged: 2014-06-04 11:27:58 UTC; bsaefken
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-06-04 14:51:07

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Package RcppArmadillo updated to version 0.4.300.8.0 with previous version 0.4.300.0 dated 2014-05-05

Title: Rcpp integration for Armadillo templated linear algebra library
Description: R and Armadillo integration using Rcpp Armadillo is a templated C++ linear algebra library (by Conrad Sanderson) that aims towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries. A delayed evaluation approach is employed (during compile time) to combine several operations into one, and to reduce (or eliminate) the need for temporaries. This is accomplished through recursive templates and template meta-programming. This library is useful if C++ has been decided as the language of choice (due to speed and/or integration capabilities), rather than another language. The RcppArmadillo package includes the header files from the templated Armadillo library. Thus users do not need to install Armadillo itself in order to use RcppArmadillo. This Armadillo integration provides a nice illustration of the capabilities of the Rcpp package for seamless R and C++ integration. Armadillo is licensed under the MPL 2.0, while RcppArmadillo (the Rcpp bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Dirk Eddelbuettel

Diff between RcppArmadillo versions 0.4.300.0 dated 2014-05-05 and 0.4.300.8.0 dated 2014-06-04

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Package MAPA updated to version 1.5 with previous version 1.4 dated 2014-05-13

Title: Multiple Aggregation Prediction Algorithm
Description: This package contains functions and wrappers for using the Multiple Aggregation Prediction Algorithm, proposed by Kourentzes et al. (2014).
Author: Nikolaos Kourentzes and Fotios Petropoulos
Maintainer: Nikolaos Kourentzes

Diff between MAPA versions 1.4 dated 2014-05-13 and 1.5 dated 2014-06-04

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New package zoib with initial version 1.0
Package: zoib
Type: Package
Title: Bayesian Inference for Zero/One Inflated Beta Regression
Version: 1.0
Date: 2014-04-21
Author: Fang Liu with contributions YunChuan Kong
Maintainer: Fang Liu
Depends: R (>= 3.0.2), rjags, coda, matrixcalc, Formula
Description: zoib fits the zero/one inflated beta regression model and obtains Bayesian Inference of the model via the Markov Chain Monte Carlo approach implemented in JAGS
URL: http://www.r-project.org, http://www3.nd.edu/~fliu2/
BugReports: http://www3.nd.edu/~fliu2/
License: GPL (>= 2)
Packaged: 2014-06-04 04:02:36 UTC; fliu2
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-06-04 07:11:37

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Package rsdepth updated to version 0.1-5 with previous version 0.1-4 dated 2014-05-30

Title: Ray Shooting Depth (i.e. RS Depth) functions for bivariate analysis
Description: Ray Shooting Depth functions are provided for bivariate analysis.
Author: Nabil Mustafa , Saurabh Ray , Mudassir Shabbir .
Maintainer: Mudassir Shabbir

Diff between rsdepth versions 0.1-4 dated 2014-05-30 and 0.1-5 dated 2014-06-04

 DESCRIPTION     |    8 ++++----
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Package evmix updated to version 2.1 with previous version 2.0 dated 2013-11-01

Title: Extreme Value Mixture Modelling, Threshold Estimation and Boundary Corrected Kernel Density Estimation
Description: The usual distribution functions, maximum likelihood inference and model diagnostics for univariate stationary extreme value mixture models are provided. Kernel density estimation including various boundary corrected kernel density estimation methods and a wide choice of kernels, with cross-validation likelihood based bandwidth estimator. Reasonable consistency with the base functions in the evd package is provided, so that users can safely interchange most code.
Author: Yang Hu and Carl Scarrott, University of Canterbury
Maintainer: Carl Scarrott

Diff between evmix versions 2.0 dated 2013-11-01 and 2.1 dated 2014-06-04

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 man/betagpd.Rd        |  231 ++++++++----------
 man/betagpdcon.Rd     |  240 ++++++++----------
 man/checking.Rd       |  109 +++-----
 man/dwm.Rd            |  195 ++++++---------
 man/evmix-package.Rd  |   78 ++----
 man/evmix.diag.Rd     |  230 +++++++----------
 man/fbckden.Rd        |  567 +++++++++++++++++++++-----------------------
 man/fbckdengpd.Rd     |  467 +++++++++++++++++-------------------
 man/fbckdengpdcon.Rd  |  472 +++++++++++++++++-------------------
 man/fbetagpd.Rd       |  251 +++++++++----------
 man/fbetagpdcon.Rd    |  262 +++++++++-----------
 man/fdwm.Rd           |  237 ++++++++----------
 man/fgammagpd.Rd      |  423 ++++++++++++++++++++-------------
 man/fgammagpdcon.Rd   |  425 ++++++++++++++++++++-------------
 man/fgkg.Rd           |  428 +++++++++++++++------------------
 man/fgkgcon.Rd        |  434 +++++++++++++++------------------
 man/fgng.Rd           |  435 ++++++++++++++++++----------------
 man/fgngcon.Rd        |  397 +++++++++++++++++--------------
 man/fgpd.Rd           |  315 +++++++++++-------------
 man/fhpd.Rd           |  279 ++++++++++-----------
 man/fhpdcon.Rd        |  271 +++++++++------------
 man/fkden.Rd          |  586 ++++++++++++++++++++++-----------------------
 man/fkdengpd.Rd       |  374 ++++++++++++++---------------
 man/fkdengpdcon.Rd    |  383 ++++++++++++++---------------
 man/flognormgpd.Rd    |  257 +++++++++-----------
 man/flognormgpdcon.Rd |  257 +++++++++-----------
 man/fmgamma.Rd        |  557 +++++++++++++++++++++++++------------------
 man/fmgammagpd.Rd     |  596 +++++++++++++++++++++++++---------------------
 man/fmgammagpdcon.Rd  |  588 ++++++++++++++++++++++++----------------------
 man/fnormgpd.Rd       |  639 +++++++++++++++++++++++++-------------------------
 man/fnormgpdcon.Rd    |  343 ++++++++++++++------------
 man/fweibullgpd.Rd    |  255 +++++++++----------
 man/fweibullgpdcon.Rd |  254 +++++++++----------
 man/gammagpd.Rd       |  404 ++++++++++++++++++++-----------
 man/gammagpdcon.Rd    |  419 ++++++++++++++++++++------------
 man/gkg.Rd            |  373 ++++++++++++-----------------
 man/gkgcon.Rd         |  397 +++++++++++++------------------
 man/gng.Rd            |  357 +++++++++++++++------------
 man/gngcon.Rd         |  394 ++++++++++++++++--------------
 man/gpd.Rd            |  234 ++++++++----------
 man/hpd.Rd            |  217 +++++++---------
 man/hpdcon.Rd         |  221 +++++++----------
 man/internal.Rd       |  100 +++----
 man/kden.Rd           |  368 ++++++++++++++--------------
 man/kdengpd.Rd        |  378 +++++++++++++++--------------
 man/kdengpdcon.Rd     |  389 +++++++++++++++---------------
 man/kernels.Rd        |  230 +++++++----------
 man/kfun.Rd           |  448 +++++++++++++++++++++++++++--------
 man/lognormgpd.Rd     |  224 ++++++++---------
 man/lognormgpdcon.Rd  |  238 ++++++++----------
 man/mgamma.Rd         |  358 ++++++++++++++++++----------
 man/mgammagpd.Rd      |  456 +++++++++++++++++++++--------------
 man/mgammagpdcon.Rd   |  467 ++++++++++++++++++++++--------------
 man/mrlplot.Rd        |  188 ++++++--------
 man/normgpd.Rd        |  308 +++++++++++++-----------
 man/normgpdcon.Rd     |  326 ++++++++++++++-----------
 man/tcplot.Rd         |  245 ++++++++-----------
 man/weibullgpd.Rd     |  234 ++++++++----------
 man/weibullgpdcon.Rd  |  238 ++++++++----------
 74 files changed, 11285 insertions(+), 10564 deletions(-)

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