Title: Mark-Recapture Distance Sampling (mrds)
Diff between mrds versions 2.1.5 dated 2014-04-22 and 2.1.6 dated 2014-06-10
Description: This package implements mark-recapture distance sampling
methods as described in D.L. Borchers, W. Zucchini and Fewster,
R.M. (1988), "Mark-recapture models for line transect surveys",
Biometrics 54: 1207-1220. and Laake, J.L. (1999) "Distance sampling
with independent observers: Reducing bias from heterogeneity by
weakening the conditional independence assumption." in Amstrup,
G.W., Garner, S.C., Laake, J.L., Manly, B.F.J., McDonald, L.L. and
Robertson, D.G. (eds) "Marine mammal survey and assessment
methods", Balkema, Rotterdam: 137-148 and Borchers, D.L., Laake,
J.L., Southwell, C. and Paxton, C.L.G. "Accommodating unmodelled
heterogeneity in double-observer distance sampling surveys". 2006.
Biometrics 62:372-378.)
Author: Jeff Laake
Maintainer: David Miller
DESCRIPTION | 8
MD5 | 104 +++----
NEWS | 10
R/NCovered.ds.R | 51 +--
R/NCovered.rem.R | 51 +--
R/NCovered.rem.fi.R | 45 +--
R/NCovered.trial.R | 51 +--
R/NCovered.trial.fi.R | 45 +--
R/adj.check.order.R | 97 +++---
R/adjfct.cos.R | 48 +--
R/adjfct.herm.R | 47 +--
R/adjfct.poly.R | 48 +--
R/cdf.ds.R | 92 ++----
R/cds.R | 28 -
R/check.mono.R | 36 +-
R/covered.region.dht.R | 92 ++----
R/create.model.frame.R | 143 +++++-----
R/ddf.R | 2
R/ddf.ds.R | 2
R/ddf.io.fi.R | 2
R/detfct.fit.opt.R | 9
R/errors.R | 41 --
R/gof.io.fi.R | 164 ++++++-----
R/gof.rem.R | 169 ++++++-----
R/gof.rem.fi.R | 157 +++++------
R/gof.trial.fi.R | 152 +++++-----
R/hermite.poly.R | 37 --
R/keyfct.gamma.R | 23 -
R/keyfct.hn.R | 29 --
R/keyfct.hz.R | 28 -
R/keyfct.th.R | 53 +--
R/mcds.R | 4
R/model.description.R | 38 +-
R/mrds-package.R | 641 +++++++++++++++++++++++----------------------
R/pks.R | 19 -
R/plot.ds.R | 7
R/print.det.tables.R | 66 ++--
R/scalevalue.R | 26 -
R/sethazard.R | 102 +++----
R/setinitial.ds.R | 30 +-
R/survey.region.dht.R | 54 +--
R/test.breaks.R | 98 +++---
README.md |only
man/adj.check.order.Rd | 14
man/ddf.Rd | 3
man/errors.Rd | 4
man/keyfct.th1.Rd |only
man/keyfct.th2.Rd |only
man/lfbcvi.Rd | 168 +++++------
man/lfgcwa.Rd | 146 +++++-----
man/mrds-opt.Rd |only
man/mrds-package.Rd | 5
man/plot.ds.Rd | 11
man/print.det.tables.Rd | 2
tests/testthat/test_easy.R | 32 ++
55 files changed, 1626 insertions(+), 1708 deletions(-)
Title: General Smoothing Splines
Diff between gss versions 2.1-1 dated 2014-05-28 and 2.1-2 dated 2014-06-10
Description: A comprehensive package for structural multivariate
function estimation using smoothing splines.
Author: Chong Gu
Maintainer: Chong Gu
ChangeLog | 8 ++++++++
DESCRIPTION | 8 ++++----
MD5 | 25 +++++++++++++------------
inst |only
man/gssanova.Rd | 7 +++++++
man/gssanova0.Rd | 7 +++++++
man/ssanova.Rd | 12 ++++++++----
man/ssanova0.Rd | 10 +++++++---
man/ssanova9.Rd | 7 +++++++
man/sscden.Rd | 4 ++++
man/sscox.Rd | 4 ++++
man/ssden.Rd | 10 +++++++---
man/sshzd.Rd | 4 ++++
man/ssllrm.Rd | 6 +++++-
14 files changed, 85 insertions(+), 27 deletions(-)
Title: A simple way to fit detection functions to distance sampling
data and calculate abundance/density for biological
populations.
Diff between Distance versions 0.9 dated 2014-04-22 and 0.9.1 dated 2014-06-10
Description: A library that provides a simple way of fitting detection
functions to distance sampling data for both line and point transects.
Adjustment term selection, left and right truncation as well as
monotonicity constraints and binning are supported. Abundance and density
estimates can also be calculated if survey area information is provided.
Author: David Lawrence Miller
Maintainer: David Lawrence Miller
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
NEWS | 5 +++++
R/ds.R | 38 +++++++++++++++++++++++++++-----------
man/ds.Rd | 40 +++++++++++++++++++++++++++++-----------
tests/testthat/test_ds.R | 3 +++
6 files changed, 73 insertions(+), 31 deletions(-)
Title: Compiling the NHL Real Time Scoring System Database for easy use
in R
Diff between nhlscrapr versions 1.5 dated 2014-04-30 and 1.5.1 dated 2014-06-10
Description: Compiling the NHL Real Time Scoring System Database for easy use in R
Author: A.C. Thomas, Samuel L. Ventura
Maintainer: A.C. Thomas
DESCRIPTION | 9 +++++----
MD5 | 16 +++++++++-------
R/convert-html.R | 5 ++++-
R/integrate.R | 22 +++++++++++++++++++---
R/manual-name-fixes.R | 3 +++
R/operations.R | 29 +++++++++++++++++++++++++++++
data |only
man/nhlscrapr-package.Rd | 2 +-
man/process-games.Rd | 10 +++-------
man/quadsarray.Rd |only
10 files changed, 73 insertions(+), 23 deletions(-)
Title: Estimation, simulation and visualization of Hierarchical
Archimedean Copulae (HAC)
Diff between HAC versions 0.3-1 dated 2014-02-18 and 1.0-0 dated 2014-06-10
Description: Package provides the estimation of the structure and the parameters, sampling methods and structural plots of Hierarchical Archimedean Copulae (HAC).
Author: Ostap Okhrin
Maintainer: Alexander Ristig
HAC-0.3-1/HAC/man/Definitions.Rd |only
HAC-0.3-1/HAC/vignettes/literature.bib |only
HAC-1.0-0/HAC/DESCRIPTION | 8
HAC-1.0-0/HAC/MD5 | 61 -
HAC-1.0-0/HAC/NAMESPACE | 20
HAC-1.0-0/HAC/R/constructor.r | 22
HAC-1.0-0/HAC/R/empirical.r | 6
HAC-1.0-0/HAC/R/estimate.r | 47
HAC-1.0-0/HAC/R/functions.r | 75 -
HAC-1.0-0/HAC/R/pdf.r | 66 -
HAC-1.0-0/HAC/R/plot.r | 1
HAC-1.0-0/HAC/R/tree2str.r | 6
HAC-1.0-0/HAC/inst/CITATION | 25
HAC-1.0-0/HAC/inst/ChangeLog | 15
HAC-1.0-0/HAC/inst/doc/HAC.R | 424 --------
HAC-1.0-0/HAC/inst/doc/HAC.Rnw | 1670 ++++++++++++++++-----------------
HAC-1.0-0/HAC/inst/doc/HAC.pdf |binary
HAC-1.0-0/HAC/man/aggregate.hac.Rd | 15
HAC-1.0-0/HAC/man/copMult.Rd | 8
HAC-1.0-0/HAC/man/dHAC.Rd | 10
HAC-1.0-0/HAC/man/emp.copula.Rd | 13
HAC-1.0-0/HAC/man/estimate.copula.Rd | 42
HAC-1.0-0/HAC/man/finData.Rd | 4
HAC-1.0-0/HAC/man/get.params.Rd | 4
HAC-1.0-0/HAC/man/hac.Rd | 26
HAC-1.0-0/HAC/man/logLik.Rd | 11
HAC-1.0-0/HAC/man/pairs.Rd | 4
HAC-1.0-0/HAC/man/phi.Rd | 30
HAC-1.0-0/HAC/man/plot.hac.Rd | 5
HAC-1.0-0/HAC/man/theta2tau.Rd | 10
HAC-1.0-0/HAC/man/tree2str.Rd | 8
HAC-1.0-0/HAC/vignettes/HAC.Rnw | 1670 ++++++++++++++++-----------------
HAC-1.0-0/HAC/vignettes/ref.bib |only
33 files changed, 1968 insertions(+), 2338 deletions(-)
Title: vcd extensions and additions
Diff between vcdExtra versions 0.6-0 dated 2014-03-08 and 0.6-1 dated 2014-06-10
Description: Provides additional data sets, methods and documentation to complement the vcd package for Visualizing Categorical Data
and the gnm package for Generalized Nonlinear Models.
In particular, vcdExtra extends mosaic, assoc and sieve plots from vcd to handle glm() and gnm() models and
adds a 3D version in mosaic3d. Additionally, methods are provided for comparing and visualizing lists of
glm and loglm objects.
Author: Michael Friendly [aut, cre],
Heather Turner [ctb],
Achim Zeileis [ctb],
Duncan Murdoch [ctb],
David Firth [ctb]
Maintainer: Michael Friendly
vcdExtra-0.6-0/vcdExtra/build |only
vcdExtra-0.6-0/vcdExtra/data/ICU.rda |only
vcdExtra-0.6-1/vcdExtra/DESCRIPTION | 13
vcdExtra-0.6-1/vcdExtra/MD5 | 114 +
vcdExtra-0.6-1/vcdExtra/NAMESPACE | 6
vcdExtra-0.6-1/vcdExtra/NEWS | 10
vcdExtra-0.6-1/vcdExtra/R/blogits.R |only
vcdExtra-0.6-1/vcdExtra/R/logLik.loglm.R |only
vcdExtra-0.6-1/vcdExtra/data/Abortion.rda |binary
vcdExtra-0.6-1/vcdExtra/data/Accident.RData |binary
vcdExtra-0.6-1/vcdExtra/data/Alligator.RData |binary
vcdExtra-0.6-1/vcdExtra/data/Bartlett.rda |binary
vcdExtra-0.6-1/vcdExtra/data/Caesar.rda |binary
vcdExtra-0.6-1/vcdExtra/data/Cancer.rda |binary
vcdExtra-0.6-1/vcdExtra/data/CyclingDeaths.RData |binary
vcdExtra-0.6-1/vcdExtra/data/DaytonSurvey.RData |binary
vcdExtra-0.6-1/vcdExtra/data/Depends.RData |binary
vcdExtra-0.6-1/vcdExtra/data/Detergent.rda |binary
vcdExtra-0.6-1/vcdExtra/data/Donner.RData |binary
vcdExtra-0.6-1/vcdExtra/data/Draft1970.RData |binary
vcdExtra-0.6-1/vcdExtra/data/Draft1970table.RData |binary
vcdExtra-0.6-1/vcdExtra/data/Dyke.rda |binary
vcdExtra-0.6-1/vcdExtra/data/Fungicide.rda |binary
vcdExtra-0.6-1/vcdExtra/data/GSS.rda |binary
vcdExtra-0.6-1/vcdExtra/data/Geissler.RData |binary
vcdExtra-0.6-1/vcdExtra/data/Gilby.rda |binary
vcdExtra-0.6-1/vcdExtra/data/Hauser79.RData |binary
vcdExtra-0.6-1/vcdExtra/data/Heart.rda |binary
vcdExtra-0.6-1/vcdExtra/data/Heckman.rda |binary
vcdExtra-0.6-1/vcdExtra/data/Hoyt.rda |binary
vcdExtra-0.6-1/vcdExtra/data/ICU.RData |only
vcdExtra-0.6-1/vcdExtra/data/JobSat.rda |binary
vcdExtra-0.6-1/vcdExtra/data/Mammograms.RData |binary
vcdExtra-0.6-1/vcdExtra/data/Mental.rda |binary
vcdExtra-0.6-1/vcdExtra/data/Mobility.rda |binary
vcdExtra-0.6-1/vcdExtra/data/ShakeWords.RData |binary
vcdExtra-0.6-1/vcdExtra/data/TV.rda |binary
vcdExtra-0.6-1/vcdExtra/data/Titanicp.rda |binary
vcdExtra-0.6-1/vcdExtra/data/Toxaemia.RData |only
vcdExtra-0.6-1/vcdExtra/data/Vietnam.RData |only
vcdExtra-0.6-1/vcdExtra/data/Vietnam.rda |binary
vcdExtra-0.6-1/vcdExtra/data/Vote1980.RData |only
vcdExtra-0.6-1/vcdExtra/data/Yamaguchi87.RData |binary
vcdExtra-0.6-1/vcdExtra/inst/doc/vcd-tutorial.R | 1524 +++++++++++-----------
vcdExtra-0.6-1/vcdExtra/man/Donner.Rd | 2
vcdExtra-0.6-1/vcdExtra/man/Hauser79.Rd | 9
vcdExtra-0.6-1/vcdExtra/man/ICU.Rd | 124 +
vcdExtra-0.6-1/vcdExtra/man/Toxaemia.Rd |only
vcdExtra-0.6-1/vcdExtra/man/Vietnam.Rd | 54
vcdExtra-0.6-1/vcdExtra/man/Vote1980.Rd |only
vcdExtra-0.6-1/vcdExtra/man/blogits.Rd |only
vcdExtra-0.6-1/vcdExtra/man/loddsratio.Rd | 8
vcdExtra-0.6-1/vcdExtra/man/logLik.loglm.Rd |only
vcdExtra-0.6-1/vcdExtra/man/vcdExtra-package.Rd | 4
vcdExtra-0.6-1/vcdExtra/vignettes/fig |only
55 files changed, 973 insertions(+), 895 deletions(-)
Title: Classification and visualization
Diff between klaR versions 0.6-10 dated 2014-02-11 and 0.6-11 dated 2014-06-10
Description: Miscellaneous functions for classification and visualization
developed at the Fakultaet Statistik, Technische Universitaet Dortmund
Author: Christian Roever, Nils Raabe, Karsten Luebke, Uwe Ligges, Gero Szepannek, Marc Zentgraf
Maintainer: Uwe Ligges
DESCRIPTION | 12 ++++++------
MD5 | 8 +++++---
NEWS | 7 ++++++-
data/GermanCredit.RData |only
man/GermanCredit.Rd |only
man/woe.Rd | 1 -
6 files changed, 17 insertions(+), 11 deletions(-)
Title: Methods to analyse ring re-encounter data
Diff between birdring versions 1.0 dated 2014-04-02 and 1.1 dated 2014-06-10
Description: The package contains methods and functions to analyse re-encounter data of birds marked by metal rings.
Author: Fraenzi Korner-Nievergelt, Rob Robinson
Maintainer: Fraenzi Korner-Nievergelt
DESCRIPTION | 10 +++++-----
MD5 | 6 +++---
NAMESPACE | 6 ++++--
R/map.density2.R | 5 +----
4 files changed, 13 insertions(+), 14 deletions(-)
Title: Benthic Ecosystem Quality Index 2
Diff between BEQI2 versions 1.0-0 dated 2014-04-16 and 1.0-1 dated 2014-06-10
Description: Benthic Ecosystem Quality Index 2. This package facilitates the analysis of benthos data. It estimates several quality indices like the total abundance of species, species richness, Shannon index, AZTI Marine Biotic Index (AMBI), and the BEQI-2 index. The package includes two additional optional features that enhance data preprocessing: (1) genus to species conversion, i.e.,taxa counts at the taxonomic genus level can optionally be converted to the species level and (2) pooling: small samples are combined to bigger samples with a standardized size to (a) meet the data requirements of the AMBI, (b) generate comparable species richness values and (c) give a higher benthos signal to noise ratio.
Author: Willem van Loon [aut, cph],
Dennis Walvoort [aut, cre]
Maintainer: Dennis Walvoort
DESCRIPTION | 8 ++---
MD5 | 59 ++++++++++++++++++++--------------------
NAMESPACE | 2 +
R/beqi2.R | 7 ++--
R/utils.R | 6 ++--
inst/NEWS.Rd |only
inst/doc/BEQI2.R | 21 ++------------
inst/doc/BEQI2.pdf |binary
inst/doc/install.R | 16 ++--------
inst/doc/install.pdf |binary
man/BEQI2-pkg.Rd | 1
man/BEQI2dir.Rd | 13 ++++----
man/abundance.Rd | 5 ++-
man/beqi2.Rd | 14 ++++-----
man/entropy.Rd | 9 +++---
man/eqr.Rd | 7 ++--
man/genusToSpecies.Rd | 20 ++++++-------
man/grapes-inInterval-grapes.Rd | 8 ++---
man/harmonize.Rd | 7 ++--
man/isAzoic.Rd | 7 ++--
man/pool.Rd | 21 ++++++--------
man/readAMBI.Rd | 20 +++++++------
man/readBEQI.Rd | 35 ++++++++++++-----------
man/readERF.Rd | 16 ++++++----
man/readFIBI.Rd | 17 ++++++-----
man/readITI.Rd | 21 ++++++++------
man/readSettings.Rd | 20 +++++++------
man/readTWN.Rd | 21 +++++++-------
man/rename.Rd | 11 ++++---
man/speciesRichness.Rd | 5 ++-
man/stripSpaces.Rd | 6 ++--
31 files changed, 203 insertions(+), 200 deletions(-)
Title: Cultural Consensus Theory applications to data
Diff between CCTpack versions 1.1 dated 2014-02-18 and 1.2 dated 2014-06-10
Description: A user-friendly GUI for the application of Cultural Consensus Theory (CCT) models and methods to consensus data. The models are applied using hierarchical Bayesian inference. The current package version supports binary, ordinal, and continuous data formats.
Author: Royce Anders
Maintainer: Royce Anders
DESCRIPTION | 8
MD5 | 6
R/cctgui.r | 409 +++++++++++++++++++++++++++++--------------------
man/CCTpack-package.Rd | 6
4 files changed, 257 insertions(+), 172 deletions(-)
Title: Pheno2Geno - Generating genetic markers and maps from molecular
phenotypes
Diff between pheno2geno versions 1.1.0 dated 2013-05-13 and 1.2.0 dated 2014-06-10
Description: Pheno2Geno is an R package for the computational generation genetic markers and maps from molecular phenotypes
Author: Konrad Zych
Maintainer: Konrad Zych
DESCRIPTION | 14 +-
MD5 | 37 +++---
NAMESPACE | 3
R/checks.R | 4
R/cross.saturate.R | 199 +++++++++++++++++++----------------
R/generate.biomarkers.R | 141 +++++++++++++-----------
R/genotypesToCross.R | 68 +++++------
R/power.plot.R | 101 ++++++++++-------
R/read.population.R | 72 +++++++-----
R/scan.qtls.r | 52 ++++-----
R/transformations.R | 4
README.md | 17 --
data/yeastCross.rda |binary
data/yeastPopulation.rda |binary
man/generate.biomarkers.rd | 3
man/phenotypes2genotypes-internal.rd | 5
man/power.plot.rd | 8 -
man/read.population.rd | 10 +
tests/mycross.csv |only
tests/test_analysis.R | 3
20 files changed, 404 insertions(+), 337 deletions(-)
Title: Tools for the analysis of air pollution data
Diff between openair versions 0.9-2 dated 2014-01-29 and 1.0 dated 2014-06-10
Description: Tools to analyse, interpret and understand air
pollution data. Data are typically hourly time series
and both monitoring data and dispersion model output
can be analysed. Many functions can also be applied to
other data, including meteorological and traffic data.
Author: David Carslaw [aut, cre],
Karl Ropkins [aut]
Maintainer: David Carslaw
openair-0.9-2/openair/man/openair-class.Rd |only
openair-0.9-2/openair/man/openair-package.Rd |only
openair-1.0/openair/DESCRIPTION | 8
openair-1.0/openair/MD5 | 183 +-
openair-1.0/openair/NAMESPACE | 10
openair-1.0/openair/NEWS | 1042 +++++------
openair-1.0/openair/R/GoogleMapsPlot.R | 1887 ++++++++++----------
openair-1.0/openair/R/TaylorDiagram.R | 3
openair-1.0/openair/R/TheilSen.R | 1160 ++++++------
openair-1.0/openair/R/airbaseFindCode.R |only
openair-1.0/openair/R/airbaseInfo.R |only
openair-1.0/openair/R/airbaseSplice.R |only
openair-1.0/openair/R/airbaseStats.R |only
openair-1.0/openair/R/calcFno2.R | 587 +++---
openair-1.0/openair/R/calendarPlot.R | 993 +++++-----
openair-1.0/openair/R/checkPrep.R | 52
openair-1.0/openair/R/corPlot.R | 699 +++----
openair-1.0/openair/R/cutData.R | 104 -
openair-1.0/openair/R/drawOpenKey.R | 2
openair-1.0/openair/R/getMeta.R | 2
openair-1.0/openair/R/import.R | 378 ++--
openair-1.0/openair/R/importADMS.R | 1973 ++++++++++-----------
openair-1.0/openair/R/importAURN.R | 2
openair-1.0/openair/R/importAirbase.R |only
openair-1.0/openair/R/importKCL.R | 1180 ++++++------
openair-1.0/openair/R/importSAQN.R | 2
openair-1.0/openair/R/importTraj.R | 6
openair-1.0/openair/R/linearRelation.R | 787 ++++----
openair-1.0/openair/R/modStats.R | 40
openair-1.0/openair/R/openair-package.R |only
openair-1.0/openair/R/openair.generics.R | 18
openair-1.0/openair/R/percentileRose.R | 1028 +++++------
openair-1.0/openair/R/polarAnnulus.R | 1436 +++++++--------
openair-1.0/openair/R/polarCluster.R | 695 +++----
openair-1.0/openair/R/polarFreq.R | 909 ++++-----
openair-1.0/openair/R/polarPlot.R | 1698 +++++++++---------
openair-1.0/openair/R/quickText.R | 2
openair-1.0/openair/R/scatterPlot.R | 2280 ++++++++++++-------------
openair-1.0/openair/R/smoothTrend.R | 846 ++++-----
openair-1.0/openair/R/timeAverage.R | 14
openair-1.0/openair/R/timePlot.R | 1211 ++++++-------
openair-1.0/openair/R/timeVariation.R | 1937 ++++++++++-----------
openair-1.0/openair/R/trajPlot.R | 1069 +++++------
openair-1.0/openair/R/trendLevel.R | 1136 ++++++------
openair-1.0/openair/R/utilities.R | 1810 ++++++++++---------
openair-1.0/openair/R/windRose.R | 1462 ++++++++--------
openair-1.0/openair/data/mydata.RData |binary
openair-1.0/openair/inst/staticdocs |only
openair-1.0/openair/man/GoogleMapsPlot.Rd | 382 +---
openair-1.0/openair/man/TaylorDiagram.Rd | 393 ++--
openair-1.0/openair/man/TheilSen.Rd | 481 ++---
openair-1.0/openair/man/airbaseFindCode.Rd |only
openair-1.0/openair/man/airbaseInfo.Rd |only
openair-1.0/openair/man/airbaseSplice.Rd |only
openair-1.0/openair/man/airbaseStats.Rd |only
openair-1.0/openair/man/aqStats.Rd | 104 -
openair-1.0/openair/man/calcFno2.Rd | 176 -
openair-1.0/openair/man/calcPercentile.Rd | 44
openair-1.0/openair/man/calendarPlot.Rd | 322 +--
openair-1.0/openair/man/conditionalEval.Rd | 352 +--
openair-1.0/openair/man/conditionalQuantile.Rd | 247 +-
openair-1.0/openair/man/corPlot.Rd | 188 --
openair-1.0/openair/man/cutData.Rd | 231 +-
openair-1.0/openair/man/drawOpenKey.Rd | 252 +-
openair-1.0/openair/man/import.Rd | 183 +-
openair-1.0/openair/man/importADMS.Rd | 246 +-
openair-1.0/openair/man/importAURN.Rd | 547 +++--
openair-1.0/openair/man/importAURNCsv.Rd | 195 --
openair-1.0/openair/man/importAirbase.Rd |only
openair-1.0/openair/man/importKCL.Rd | 985 ++++------
openair-1.0/openair/man/importMeta.Rd | 50
openair-1.0/openair/man/importSAQN.Rd | 321 +--
openair-1.0/openair/man/importTraj.Rd | 219 +-
openair-1.0/openair/man/kernelExceed.Rd | 252 +-
openair-1.0/openair/man/linearRelation.Rd | 211 +-
openair-1.0/openair/man/modStats.Rd | 164 -
openair-1.0/openair/man/mydata.Rd | 34
openair-1.0/openair/man/openColours.Rd | 109 -
openair-1.0/openair/man/openair.Rd |only
openair-1.0/openair/man/percentileRose.Rd | 317 +--
openair-1.0/openair/man/polarAnnulus.Rd | 471 ++---
openair-1.0/openair/man/polarCluster.Rd | 238 +-
openair-1.0/openair/man/polarFreq.Rd | 327 +--
openair-1.0/openair/man/polarPlot.Rd | 727 +++----
openair-1.0/openair/man/quickText.Rd | 33
openair-1.0/openair/man/rollingMean.Rd | 84
openair-1.0/openair/man/scatterPlot.Rd | 533 ++---
openair-1.0/openair/man/selectByDate.Rd | 80
openair-1.0/openair/man/selectRunning.Rd | 46
openair-1.0/openair/man/smoothTrend.Rd | 335 +--
openair-1.0/openair/man/splitByDate.Rd | 25
openair-1.0/openair/man/summaryPlot.Rd | 222 +-
openair-1.0/openair/man/timeAverage.Rd | 207 +-
openair-1.0/openair/man/timePlot.Rd | 450 ++--
openair-1.0/openair/man/timeProp.Rd | 249 +-
openair-1.0/openair/man/timeVariation.Rd | 413 ++--
openair-1.0/openair/man/trajCluster.Rd | 146 -
openair-1.0/openair/man/trajPlot.Rd | 386 ++--
openair-1.0/openair/man/trendLevel.Rd | 301 +--
openair-1.0/openair/man/windRose.Rd | 444 ++--
100 files changed, 20422 insertions(+), 20951 deletions(-)
Title: Detection of domains in HiC data
Diff between HiCseg versions 1.0 dated 2014-03-26 and 1.1 dated 2014-06-10
Description: This package allows you to detect domains in HiC data by rephrasing this problem as a two-dimensional segmentation issue.
Author: Celine Levy-Leduc
Maintainer: Celine Levy-Leduc
HiCseg-1.0/HiCseg/data/matrice.rda |only
HiCseg-1.0/HiCseg/man/matrice.Rd |only
HiCseg-1.1/HiCseg/DESCRIPTION | 8 +++----
HiCseg-1.1/HiCseg/MD5 | 16 +++++++++------
HiCseg-1.1/HiCseg/R/HiCseg_linkC_R.R | 28 ++++++++++++---------------
HiCseg-1.1/HiCseg/data/matrix.rda |only
HiCseg-1.1/HiCseg/inst |only
HiCseg-1.1/HiCseg/man/HiCseg-package.Rd | 4 +--
HiCseg-1.1/HiCseg/man/HiCseg_linkC_R.Rd | 33 +++++++++++++-------------------
HiCseg-1.1/HiCseg/man/matrix.Rd |only
HiCseg-1.1/HiCseg/vignettes |only
11 files changed, 43 insertions(+), 46 deletions(-)
Title: Automatic Generation of Exams in R
Diff between exams versions 1.9-6 dated 2013-06-06 and 2.0-0 dated 2014-06-10
Description: Sweave-based automatic generation of exams including multiple-choice
questions and arithmetic problems. Exams can be produced in various formats, including
PDF, HTML, Moodle XML, QTI 1.2 (for OLAT/OpenOLAT), QTI 2.1.
Author: Achim Zeileis [aut, cre],
Bettina Gruen [aut],
Friedrich Leisch [aut],
Nikolaus Umlauf [aut]
Maintainer: Achim Zeileis
DESCRIPTION | 38 +-
MD5 | 90 +++--
NAMESPACE | 6
NEWS | 44 ++
R/exams2html.R | 16 -
R/exams2lops.R | 6
R/exams2moodle.R | 115 ++++++-
R/exams2pdf.R | 12
R/exams2qti12.R | 346 +++++++++++++++--------
R/exams2qti21.R |only
R/read_metainfo.R | 42 ++
R/tex2image.R | 15
R/transformers.R | 28 +
R/xexams.R | 41 ++
build |only
inst/CITATION | 27 -
inst/doc/exams.R | 59 +--
inst/doc/exams.Rnw | 215 ++++++--------
inst/doc/exams.pdf |binary
inst/doc/exams2.R | 17 -
inst/doc/exams2.Rnw | 262 +++++++++++------
inst/doc/exams2.pdf |binary
inst/exercises/boxhist.Rnw | 2
inst/exercises/boxhist2.Rnw | 2
inst/exercises/fourfold.Rnw |only
inst/exercises/fourfold2.Rnw |only
inst/tex/exam.tex | 2
inst/tex/html-plain.tex | 2
inst/tex/oexam.tex | 2
inst/tex/osolution.tex | 2
inst/tex/plain.tex | 2
inst/tex/plain8.tex | 2
inst/tex/plain9.tex | 2
inst/tex/solution.tex | 2
inst/xml/qti12.xml | 1
inst/xml/qti21.xml |only
man/exams.Rd | 3
man/exams2html.Rd | 20 +
man/exams2lops.Rd | 20 -
man/exams2moodle.Rd | 77 +++--
man/exams2pdf.Rd | 46 ++-
man/exams2qti12.Rd | 117 ++++++-
man/read_exercise.Rd | 12
man/xexams.Rd | 14
vignettes/exams.Rnw | 215 ++++++--------
vignettes/exams.bib | 72 ++--
vignettes/exams2.Rnw | 262 +++++++++++------
vignettes/screenshots/exams2moodle-fourfold.png |only
vignettes/screenshots/exams2moodle-fourfold2.png |only
vignettes/screenshots/exams2qti12-boxhist.png |only
50 files changed, 1446 insertions(+), 812 deletions(-)
Title: JSON for R
Diff between rjson versions 0.2.13 dated 2013-08-27 and 0.2.14 dated 2014-06-10
Description: Converts R object into JSON objects and vice-versa
Author: Alex Couture-Beil
Maintainer: Alex Couture-Beil
DESCRIPTION | 6 -
MD5 | 19 ++--
build |only
inst/changelog.txt | 5 -
inst/doc/json_rpc_server.pdf |binary
inst/rpc_server/server.r | 176 +++++++++++++++++++--------------------
inst/rpc_server/some_script.r | 22 ++--
inst/rpc_server/start_server | 16 +--
inst/rpc_server/start_server.bat | 14 +--
inst/unittests/test.list.r | 6 +
src/parser.c | 12 +-
11 files changed, 146 insertions(+), 130 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-02-09 1.0.2
2014-02-04 1.0.1
2014-01-28 1.0
Title: Standardized Climate Indices such as SPI, SRI or SPEI
Diff between SCI versions 1.0-0 dated 2014-02-28 and 1.0-1 dated 2014-06-10
Description: Functions for generating Standardized Climate Indices (SCI).
SCI is a transformation of (smoothed) climate (or environmental)
time series that removes seasonality and forces the data to
take values of the standard normal distribution. SCI was
originally developed for precipitation. In this case it is
known as the Standardized Precipitation Index (SPI).
Author: Lukas Gudmundsson & James H. Stagge
Maintainer: Lukas Gudmundsson
ChangeLog | 2 ++
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/distrstart.r | 2 +-
man/SCI-package.Rd | 4 ++--
5 files changed, 13 insertions(+), 11 deletions(-)
Title: Statistical transformations for post-processing climate model
output
Diff between qmap versions 1.0-2 dated 2014-01-09 and 1.0-3 dated 2014-06-10
Description: Empirical adjustment of the distribution of variables originating from (regional) climate model simulations using quantile mapping.
Author: Lukas Gudmundsson
Maintainer: Lukas Gudmundsson
ChangeLog | 5 +++++
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
R/fitQmapQUANT.R | 2 +-
R/fitQmapRQUANT.R | 2 +-
R/fitQmapSSPLIN.R | 2 +-
man/qmap-package.Rd | 4 ++--
7 files changed, 20 insertions(+), 15 deletions(-)
Title: Smoothing tools
Diff between gsmoothr versions 0.1.5 dated 2011-06-23 and 0.1.7 dated 2014-06-10
Description: Tools rewritten in C for various smoothing tasks
Author: Mark Robinson
Maintainer: Mark Robinson
DESCRIPTION | 17 ++++++++---------
MD5 |only
NAMESPACE | 2 ++
3 files changed, 10 insertions(+), 9 deletions(-)
Title: Rank-based Estimation and Prediction in Random Effects Nested
Models
Diff between rlme versions 0.3 dated 2014-05-25 and 0.4 dated 2014-06-10
Description: Estimates robust rank-based fixed effects and predicts robust random effects in two- and three- level random effects nested models.
Author: Yusuf Bilgic, Herb Susmann and Joseph McKean
Maintainer: Yusuf Bilgic
rlme-0.3/rlme/src/Makevars |only
rlme-0.3/rlme/src/Makevars.win |only
rlme-0.4/rlme/DESCRIPTION | 12 ++++++------
rlme-0.4/rlme/MD5 | 30 ++++++++++++++----------------
rlme-0.4/rlme/NAMESPACE | 2 +-
rlme-0.4/rlme/man/GEER_est.Rd | 3 ++-
rlme-0.4/rlme/man/GR_est.Rd | 3 ++-
rlme-0.4/rlme/man/JR_est.Rd | 3 ++-
rlme-0.4/rlme/man/beta_var.Rd | 3 ++-
rlme-0.4/rlme/man/minimize_dispersion.Rd | 2 +-
rlme-0.4/rlme/man/rlme-package.Rd | 4 ++--
rlme-0.4/rlme/man/rprmeddis.Rd | 3 ++-
rlme-0.4/rlme/man/schools.Rd | 8 +++++---
rlme-0.4/rlme/man/wilstep.Rd | 3 ++-
rlme-0.4/rlme/src/pairup.cpp | 4 ++--
rlme-0.4/rlme/src/rhosch.cpp | 9 ---------
rlme-0.4/rlme/tests/testthat/test-gr.R | 20 ++++++++++----------
17 files changed, 53 insertions(+), 56 deletions(-)
Title: Data and Functions from the book R Graphics, Second Edition
Diff between RGraphics versions 2.0-7 dated 2014-03-11 and 2.0-9 dated 2014-06-10
Description: Data and Functions from the book R Graphics, Second Edition. There is a function to produce each figure in the book, plus several functions, classes, and methods defined in Chapter 8.
Author: Paul Murrell
Maintainer: Paul Murrell
DESCRIPTION | 15 ++++++++-------
MD5 | 12 ++++++------
R/figures.R | 5 +++++
data/ocean.rda |binary
data/ozTemp.rda |binary
data/wind.rda |binary
data/xmm.rda |binary
7 files changed, 19 insertions(+), 13 deletions(-)
Title: Hierarchical and grouped time series
Diff between hts versions 4.2 dated 2014-04-09 and 4.3 dated 2014-06-10
Description: Methods for analysing and forecasting hierarchical and grouped time series.
Author: Rob J Hyndman, Earo Wang and Alan Lee with contributions from Roman A Ahmed and Han Lin Shang to earlier versions of the package
Maintainer: Rob J Hyndman
ChangeLog | 10 ++-
DESCRIPTION | 8 +-
MD5 | 39 ++++++------
NAMESPACE | 1
R/combinef.R | 80 ++++++++++++++++---------
R/forecast.gts.R | 2
R/gts.R | 140 +++++++++++++++++++++++++++++++++++----------
R/hts.R | 99 ++++++++++++++++++-------------
R/plot.gts.R | 12 +--
README.md |only
demo/htseg2.R | 2
inst/doc/hts.pdf |binary
inst/tests/test-combinef.R | 11 ---
inst/tests/test-gts.R | 8 --
inst/tests/test-hts.R | 2
man/combinef.Rd | 5 +
man/forecast.gts.Rd | 8 ++
man/gts.Rd | 56 +++++++++++++++---
man/hts-package.Rd | 6 +
man/hts.Rd | 32 +++++-----
vignettes/hts.bib | 9 ++
21 files changed, 357 insertions(+), 173 deletions(-)
Title: Estimation of the number of fatalities from carcass searches
Diff between carcass versions 1.1 dated 2013-09-05 and 1.2 dated 2014-06-10
Description: The number of bird or bat fatalities from collisions with buildings, towers or wind energy turbines can be estimated based on carcass searches and experimentally assessed carcass persistence times and searcher efficiency. This package provides diverse functions for estimating the probability that a bird or bat that died is found by a searcher. It further provides a function to obtain a posterior distribution of the number of fatalities based on the number of carcasses found and the estimated detection probability.
Author: Fraenzi Korner-Nievergelt, Ivo Niermann, Oliver Behr, Matthew A. Etterson, Robert Brinkmann, Pius Korner, Barbara Hellriegel, Tobias Roth
Maintainer: Fraenzi Korner-Nievergelt
DESCRIPTION | 13 +-
MD5 | 28 +++--
NAMESPACE | 10 +
R/CIetterson.r |only
R/estimateN.r | 246 ++++++++++++++++++++++++-----------------------
R/ettersonEq14.r |only
R/ettersonEq14v1.r |only
R/ettersonEq14v2.r |only
R/pkorner.R | 4
R/posteriorN.R | 71 ++++++-------
R/search.efficiency.r | 3
man/CIetterson.Rd |only
man/carcass-package.Rd | 13 +-
man/estimateN.Rd | 49 +++++++--
man/ettersonEq14.Rd |only
man/ettersonEq14v1.Rd |only
man/ettersonEq14v2.Rd |only
man/posteriorN.Rd | 1
man/search.efficiency.Rd | 2
19 files changed, 251 insertions(+), 189 deletions(-)
Title: Bayesian Generalized Linear Regression
Diff between BGLR versions 1.0.2 dated 2013-10-22 and 1.0.3 dated 2014-06-10
Description: Bayesian Generalized Linear Regression
Author: Gustavo de los Campos, Paulino Perez Rodriguez,
Maintainer: Paulino Perez Rodriguez
BGLR-1.0.2/BGLR/R/plot.BGLR.R |only
BGLR-1.0.3/BGLR/CHANGELOG | 3 +
BGLR-1.0.3/BGLR/DESCRIPTION | 8 ++--
BGLR-1.0.3/BGLR/MD5 | 16 +++++---
BGLR-1.0.3/BGLR/NAMESPACE | 8 +++-
BGLR-1.0.3/BGLR/R/BGLR.R | 65 +++++++++++++++++++++++++---------
BGLR-1.0.3/BGLR/R/methods.R |only
BGLR-1.0.3/BGLR/build/vignette.rds |binary
BGLR-1.0.3/BGLR/man/effects.BGLR.Rd |only
BGLR-1.0.3/BGLR/man/predict.BGLR.Rd |only
BGLR-1.0.3/BGLR/man/residuals.BGLR.Rd |only
BGLR-1.0.3/BGLR/man/summary.BGLR.Rd |only
12 files changed, 72 insertions(+), 28 deletions(-)
Title: Disentangles the effects of geographic and ecological isolation
on genetic differentiation
Diff between BEDASSLE versions 1.3 dated 2014-01-25 and 1.4 dated 2014-06-10
Description: This package provides functions that allow users to quantify the relative
contributions of geographic and ecological distances to empirical patterns of genetic
differentiation on a landscape. Specifically, the package contains a function that
calls a custom Markov chain Monte Carlo (MCMC) algorithm, which is used to estimate
the parameters of the inference model, as well as functions for performing MCMC
diagnosis and assessing model adequacy.
Author: Gideon Bradburd
Maintainer: Gideon Bradburd
DESCRIPTION | 6 +++---
MD5 | 10 +++++-----
R/Update_beta.R | 1 +
R/link.up.posteriors.R | 3 ++-
R/plot_acceptance_rate.R | 2 +-
man/BEDASSLE-package.Rd | 2 +-
6 files changed, 13 insertions(+), 11 deletions(-)