Title: Infrastructure for Data Stream Mining
Diff between stream versions 1.0-2 dated 2014-06-16 and 1.0-3 dated 2014-07-14
Description: A framework for data stream modeling and associated data mining tasks such as clustering and classification. The development of this package was supported in part by NSF IIS-0948893 and NIH R21HG005912.
Author: Michael Hahsler [aut, cre, cph],
Matthew Bolanos [aut, cph],
John Forrest [aut, cph]
Maintainer: Michael Hahsler
DESCRIPTION | 8 +-
MD5 | 64 ++++++++--------
NAMESPACE | 12 ++-
R/DSC.R | 2
R/DSC_DBSCAN.R | 6 -
R/DSC_DStream.R | 10 +-
R/DSC_Hierarchical.R | 6 -
R/DSC_Kmeans.R | 8 +-
R/DSC_Reachability.R | 2
R/DSC_TwoStage.R |only
R/DSC_tNN.R | 17 ++--
R/DSD.R | 2
R/DSD_Benchmarks.R | 4 -
R/DSD_Cubes.R | 2
R/DSD_Gaussians.R | 2
R/DSD_MG.R | 3
R/DSD_ScaleStream.R | 2
R/DSD_Target.R | 2
R/DSD_UniformNoise.R | 2
R/DSD_Wrapper.R | 2
R/DSD_mlbenchData.R | 2
R/DSD_mlbenchGenerator.R | 2
R/animation.R | 16 +++-
R/cluster.R | 18 ++--
R/evaluate.R | 186 +++++++++++++++++++++++++++++------------------
build/vignette.rds |binary
inst/NEWS | 4 +
inst/doc/stream.R | 2
inst/doc/stream.Rnw | 2
inst/doc/stream.pdf |binary
man/DSC_TwoStage.Rd |only
man/animation.Rd | 6 +
man/evaluate.Rd | 98 ++++++++++++++----------
vignettes/stream.Rnw | 2
34 files changed, 294 insertions(+), 200 deletions(-)
Title: Inverse estimation/calibration functions
Diff between investr versions 1.0.1 dated 2014-04-19 and 1.1.0 dated 2014-07-14
Description: This package provides functions to facilitate inverse
estimation/calibration in linear, nonlinear, and (linear) mixed models.
A generic function is also provided for plotting fitted regression
models with or without confidence/prediction bands that may be of use to
the general user.
Author: Brandon M. Greenwell
Maintainer: Brandon M. Greenwell
investr-1.0.1/investr/inst/tests |only
investr-1.1.0/investr/DESCRIPTION | 16
investr-1.1.0/investr/MD5 | 41 -
investr-1.1.0/investr/NAMESPACE | 7
investr-1.1.0/investr/NEWS | 10
investr-1.1.0/investr/R/calibrate.R | 199 ++++----
investr-1.1.0/investr/R/invest.R | 640 ++++++++++++++++-----------
investr-1.1.0/investr/R/plotFit.R | 198 ++++----
investr-1.1.0/investr/R/utilities.R | 224 ++++++---
investr-1.1.0/investr/man/Sigma.Rd |only
investr-1.1.0/investr/man/arsenic.Rd | 16
investr-1.1.0/investr/man/calibrate.Rd | 104 ++--
investr-1.1.0/investr/man/crystal.Rd | 15
investr-1.1.0/investr/man/invest.Rd | 113 ++--
investr-1.1.0/investr/man/investr-package.Rd | 4
investr-1.1.0/investr/man/makeData.Rd |only
investr-1.1.0/investr/man/makeX.Rd |only
investr-1.1.0/investr/man/makeZ.Rd |only
investr-1.1.0/investr/man/plotFit.Rd | 129 ++---
investr-1.1.0/investr/man/predict2.Rd | 17
investr-1.1.0/investr/man/varY.Rd |only
investr-1.1.0/investr/tests |only
22 files changed, 982 insertions(+), 751 deletions(-)
Title: Hierarchical Climate Regionalization: An Improved Hierarchical
Clustering in R for Climate Regionalization
Diff between HiClimR versions 1.1.0 dated 2014-05-15 and 1.1.1 dated 2014-07-14
Description: HiClimR package modifies and improves hierarchical clustering in R
('hclust' function in 'stats' library), for climate regionalization. It adds a new
clustering method (called, regional linkage) to the set of available methods together
with several features including regridding, coarsening spatial resolution, geographic
masking, data thresholds, detrending and standardization preprocessing, faster correlation
function, hybrid hierarchical clustering, and cluster validation.
Badr et. al (2014) describes the regionalization algorithms and data processing tools
included in the package and presents a demonstration application in which the package
is used to regionalize Africa on the basis of interannual precipitation variability.
It is applicable to any correlation-based clustering.
Author: Hamada S. Badr [aut, cre],
Benjamin F. Zaitchik [aut],
Amin K. Dezfuli [aut]
Maintainer: Hamada S. Badr
Changelog | 248 +++++++++++++++++++++++++++++++-------------------------
DESCRIPTION | 8 -
MD5 | 24 ++---
R/HiClimR.R | 19 ++--
R/coarseR.R | 11 +-
R/fastCor.R | 11 +-
R/geogMask.R | 31 +++++--
R/grid2D.R | 11 +-
R/minSigCor.R | 11 +-
R/validClimR.R | 11 +-
inst/CITATION | 5 -
man/geogMask.Rd | 6 +
src/HiClimR.f90 | 31 +++----
13 files changed, 242 insertions(+), 185 deletions(-)
Title: Random Forests for Survival, Regression and Classification
(RF-SRC)
Diff between randomForestSRC versions 1.5.3 dated 2014-06-25 and 1.5.4 dated 2014-07-14
More information about randomForestSRC at CRAN
Description: A unified treatment of Breiman's random forests for survival, regression and classification problems based on Ishwaran and Kogalur's random survival forests (RSF) package. The package runs in both serial and parallel (OpenMP) modes.
Author: Hemant Ishwaran
Maintainer: Udaya B. Kogalur
DESCRIPTION | 8 -
MD5 | 184 ++++++++++++++++++++---------------------
NAMESPACE | 3
R/data.utilities.R | 2
R/factor.utilities.R | 2
R/find.interaction.R | 2
R/generic.predict.rfsrc.R | 3
R/impute.rfsrc.R | 2
R/max.subtree.R | 2
R/plot.competing.risk.R | 2
R/plot.rfsrc.R | 5 -
R/plot.survival.R | 2
R/plot.variable.R | 5 -
R/predict.rfsrc.R | 4
R/print.rfsrc.R | 5 -
R/rf2rfz.R | 2
R/rfsrc.R | 7 -
R/rfsrc.news.R | 2
R/rfsrcSyn.R | 39 ++++++--
R/stat.split.R |only
R/utilities.R | 22 ++--
R/var.select.R | 2
R/vimp.R | 2
R/zzz.R | 2
configure.ac | 2
inst/NEWS | 13 ++
inst/doc/rsf-Rnews.pdf |binary
man/plot.rfsrc.Rd | 3
man/plot.variable.Rd | 5 -
man/predict.rfsrc.Rd | 4
man/print.rfsrc.Rd | 7 -
man/randomForestSRC_package.Rd | 8 +
man/rfsrc.Rd | 17 ++-
man/rfsrcSyn.Rd | 101 +++++++++-------------
man/stat.split.Rd |only
src/bootstrap.c | 2
src/bootstrap.h | 2
src/classification.c | 2
src/classification.h | 2
src/dataParser.c | 2
src/dataParser.h | 2
src/entry.c | 2
src/entry.h | 2
src/extern.h | 2
src/factor.h | 2
src/factorOps.c | 2
src/factorOps.h | 2
src/global.h | 2
src/importance.c | 2
src/importance.h | 2
src/impute.c | 2
src/impute.h | 2
src/node.h | 2
src/nodeOps.c | 2
src/nodeOps.h | 2
src/nrutil.c | 2
src/nrutil.h | 2
src/random.c | 2
src/random.h | 2
src/regression.c | 2
src/regression.h | 2
src/rfsrc.c | 2
src/rfsrc.h | 2
src/rfsrcUtil.c | 2
src/rfsrcUtil.h | 2
src/split.c | 2
src/split.h | 2
src/splitClas.c | 2
src/splitClas.h | 2
src/splitRegr.c | 2
src/splitRegr.h | 2
src/splitSurv.c | 2
src/splitSurv.h | 2
src/splitUspv.c | 2
src/splitUspv.h | 2
src/splitUtil.c | 2
src/splitUtil.h | 2
src/stack.c | 2
src/stack.h | 2
src/stackOutput.c | 2
src/stackOutput.h | 2
src/stackPreDefined.c | 2
src/stackPreDefined.h | 2
src/survival.c | 2
src/survival.h | 2
src/survivalE.c | 2
src/survivalE.h | 2
src/terminal.h | 2
src/trace.c | 2
src/trace.h | 2
src/tree.c | 2
src/tree.h | 2
src/treeUtil.c | 2
src/treeUtil.h | 2
94 files changed, 309 insertions(+), 278 deletions(-)
Permanent link
Title: Generalized Diffusion Magnetic Resonance Imaging
Diff between gdimap versions 0.1-3 dated 2014-02-03 and 0.1-6 dated 2014-07-14
Description: Diffusion anisotropy has been used to characterize
white matter neuronal pathways in the human brain, and infer global
connectivity in the central nervous system. The package implements
algorithms to estimate and visualize the orientation of neuronal
pathways in model-free methods (q-space imaging methods).
For estimating fibre orientations two methods have been
implemented. One method implements fibre orientation detection
through local maxima extraction. A second more robust method
is based on directional statistical clustering of ODF voxel data.
Fibre orientations in multiple fibre voxels are estimated using
a mixture of von Mises-Fisher (vMF) distributions. This statistical
estimation procedure is used to resolve crossing fibre
configurations.
Reconstruction of orientation distribution function (ODF)
profiles may be performed using the standard generalized
q-sampling imaging (GQI) approach, Garyfallidis' GQI (GQI2)
approach, or Aganj's variant of the Q-ball imaging (CSA-QBI)
approach. Procedures for the visualization of RGB-maps,
line-maps and glyph-maps of real diffusion magnetic resonance
imaging (dMRI) data-sets are included in the package.
Author: Adelino Ferreira da Silva
Maintainer: Adelino Ferreira da Silva
DESCRIPTION | 13 +--
MD5 | 68 +++++++++----------
NEWS | 13 +++
R/gdiutils.R | 14 +++
R/gqi.odfpeaklines.R | 18 +----
R/gqi.odfpeaks.R | 9 +-
R/gqi.odfvmf.R | 137 +++++++++++++++++++++++++-------------
R/gqi.odfvmflines.R | 79 ++++++++++++++--------
R/gqi.odfvxgrid.R | 13 +--
R/niinorm.R | 24 +++---
R/plotglyph.R | 4 -
R/simul.fandtasia.R | 60 ++++++++--------
R/simul.fandtasiaSignal.R | 2
R/simul.simplefield.R | 49 +++++++++----
R/simulglyph.vmf.R | 61 +++++++----------
R/sph.odfpeaklines.R | 36 +++-------
R/sph.odfpeaks.R | 37 ++++------
R/sph.odfvmf.R | 164 +++++++++++++++++++++++++++++-----------------
R/sph.odfvmflines.R | 67 ++++++++++--------
R/sph.odfvxgrid.R | 98 ++++++++++++---------------
man/gdimap-package.Rd | 4 -
man/gqi.odfpeaklines.Rd | 10 +-
man/gqi.odfpeaks.Rd | 3
man/gqi.odfvmf.Rd | 19 +++--
man/gqi.odfvmflines.Rd | 38 +++++++---
man/gqi.odfvxgrid.Rd | 7 -
man/plotglyph.Rd | 4 -
man/simul.fandtasia.Rd | 10 +-
man/simul.simplefield.Rd | 7 +
man/simulglyph.vmf.Rd | 38 +++++++---
man/sph.odfpeaklines.Rd | 18 +----
man/sph.odfpeaks.Rd | 8 --
man/sph.odfvmf.Rd | 16 ++--
man/sph.odfvmflines.Rd | 24 +++---
man/sph.odfvxgrid.Rd | 13 +--
35 files changed, 667 insertions(+), 518 deletions(-)
Title: The cg package to compare groups
Diff between cg versions 1.0-0 dated 2014-02-14 and 1.0-1 dated 2014-07-14
Description: cg is comprehensive data analysis software, and stands for "compare groups." Its genesis and evolution are driven by common needs to compare administrations, conditions, etc. in medicine research & development. The current version provides comparisons of unpaired samples, i.e. a linear model with one factor of at least two levels. It also provides comparisons of two paired samples. Good data graphs, modern statistical methods, and useful displays of results are emphasized.
Author: Bill Pikounis [aut, cre, cph], John Oleynick [aut], Eva Ye [ctb]
Maintainer: Bill Pikounis
DESCRIPTION | 18 -
MD5 | 202 ++++++-------
R/00virtual.R | 2
R/generics.R | 17 +
R/p00ReadInOneFactorData.R | 4
R/p02DescriptiveOneFactorData.R | 2
R/p03FormalOneFactorData.R | 17 -
R/p04DiagnosticsOneFactorData.R | 2
R/p05SampleSizeOneFactorData.R | 2
R/p10ReadInPairedDifferenceData.R | 19 -
R/p13FormalPairedDifferenceData.R | 11
R/utilities.R | 2
R/valid.R | 19 -
R/version.R | 2
inst/NEWS | 77 +++-
man/anorexiaFT.Rd | 4
man/boxplot.cgOneFactorData.Rd | 2
man/cg-package.Rd | 6
man/cgInternalClasses.Rd | 2
man/cgInternalUtilities.Rd | 2
man/cgLineColors.Rd | 2
man/cgValidity.Rd | 2
man/comparisons.Rd | 2
man/comparisonsGraph.cgOneFactorComparisonsTable.Rd | 2
man/comparisonsGraph.cgPairedDifferenceComparisonsTable.Rd | 2
man/comparisonsGraphGeneric.Rd | 2
man/comparisonsTable.Rd | 2
man/comparisonsTable.cgOneFactorFit.Rd | 2
man/comparisonsTable.cgPairedDifferenceFit.Rd | 2
man/comparisonsgraph.Rd | 2
man/correlationTable.Rd | 2
man/correlationTable.cgPairedDifferenceData.Rd | 2
man/descriptiveTable.Rd | 2
man/descriptiveTable.cgOneFactorData.Rd | 2
man/descriptiveTable.cgPairedDifferenceData.Rd | 2
man/diffGraph.Rd | 2
man/diffGraph.cgPairedDifferenceData.Rd | 2
man/downweightedTable.Rd | 2
man/downweightedTable.cgOneFactorFit.Rd | 2
man/downweightedTable.cgPairedDifferenceFit.Rd | 2
man/errorBarGraph.cgOneFactorFit.Rd | 2
man/errorBarGraphGeneric.Rd | 2
man/errorbargraph.Rd | 2
man/fit.Rd | 2
man/fit.cgOneFactorData.Rd | 2
man/fit.cgPairedDifferenceData.Rd | 2
man/globalTest.Rd | 2
man/globalTest.cgOneFactorFit.Rd | 2
man/grpSummaryTable.Rd | 2
man/grpSummaryTable.cgOneFactorFit.Rd | 2
man/kmGraph.Rd | 2
man/kmGraph.cgOneFactorData.Rd | 2
man/pointGraph.Rd | 2
man/pointGraph.cgOneFactorData.Rd | 2
man/prepare.Rd | 2
man/prepareCGOneFactorData.Rd | 2
man/prepareCGPairedDifferenceData.Rd | 2
man/print.cgOneFactorComparisonsTable.Rd | 2
man/print.cgOneFactorDescriptiveTable.Rd | 2
man/print.cgOneFactorDownweightedTable.Rd | 2
man/print.cgOneFactorFit.Rd | 2
man/print.cgOneFactorGlobalTest.Rd | 2
man/print.cgOneFactorGrpSummaryTable.Rd | 2
man/print.cgOneFactorSampleSizeTable.Rd | 2
man/print.cgPairedDifferenceComparisonsTable.Rd | 2
man/print.cgPairedDifferenceCorrelationTable.Rd | 2
man/print.cgPairedDifferenceDescriptiveTable.Rd | 2
man/print.cgPairedDifferenceDownweightedTable.Rd | 2
man/print.cgPairedDifferenceFit.Rd | 2
man/print.cgPairedDifferenceSampleSizeTable.Rd | 2
man/print.cgPairedDifferenceVarianceTable.Rd | 2
man/profileGraph.Rd | 2
man/profileGraph.cgPairedDifferenceData.Rd | 2
man/qqGraph.Rd | 2
man/qqGraph.cgOneFactorFit.Rd | 2
man/qqGraph.cgPairedDifferenceFit.Rd | 2
man/samplesizeGraph.Rd | 2
man/samplesizeGraph.cgOneFactorSampleSizeTable.Rd | 2
man/samplesizeGraph.cgPairedDifferenceSampleSizeTable.Rd | 2
man/samplesizeTable.Rd | 2
man/samplesizeTable.cgOneFactorFit.Rd | 2
man/show.cgOneFactorComparisonsTable.Rd | 2
man/show.cgOneFactorDescriptiveTable.Rd | 2
man/show.cgOneFactorDownweightedTable.Rd | 2
man/show.cgOneFactorGlobalTest.Rd | 2
man/show.cgOneFactorGrpSummaryTable.Rd | 2
man/show.cgOneFactorSampleSizeTable.Rd | 2
man/show.cgPairedDifferenceComparisonsTable.Rd | 2
man/show.cgPairedDifferenceCorrelationTable.Rd | 2
man/show.cgPairedDifferenceDescriptiveTable.Rd | 2
man/show.cgPairedDifferenceDownweightedTable.Rd | 2
man/show.cgPairedDifferenceSampleSizeTable.Rd | 2
man/show.cgPairedDifferenceVarianceTable.Rd | 2
man/showObj.Rd | 2
man/showObj.cgOneFactorFit.Rd | 2
man/showObj.cgPairedDifferenceFit.Rd | 2
man/summary.cgOneFactorFit.Rd | 2
man/summary.cgPairedDifferenceFit.Rd | 2
man/varianceGraph.Rd | 2
man/varianceGraph.cgOneFactorFit.Rd | 2
man/varianceTable.Rd | 2
man/varianceTable.cgPairedDifferenceFit.Rd | 2
102 files changed, 298 insertions(+), 278 deletions(-)
Title: Routines for fitting kinetic models with one or more state
variables to chemical degradation data
Diff between mkin versions 0.9-30 dated 2014-07-11 and 0.9-31 dated 2014-07-14
Description: Calculation routines based on the FOCUS Kinetics Report (2006).
Includes a function for conveniently defining differential equation models,
model solution based on eigenvalues if possible or using numerical solvers
and a choice of the optimisation methods made available by the FME package
(default is a Levenberg-Marquardt variant). Please note that no warranty is
implied for correctness of results or fitness for a particular purpose.
Author: Johannes Ranke [aut, cre, cph],
Katrin Lindenberger [ctb],
René Lehmann [ctb],
Eurofins Regulatory AG [cph]
Maintainer: Johannes Ranke
DESCRIPTION | 8 +--
MD5 | 18 +++----
NEWS | 10 ++++
R/mkinerrmin.R | 27 +++++++---
R/mkinfit.R | 36 ++++++--------
build/vignette.rds |binary
inst/doc/FOCUS_L.html | 102 ++++++++++++++++++++---------------------
inst/doc/FOCUS_Z.pdf |binary
inst/doc/mkin.pdf |binary
man/schaefer07_complex_case.Rd | 2
10 files changed, 111 insertions(+), 92 deletions(-)
Title: Implementation of the Nemenyi post-hoc test to find the groups
of data that differ after a statistical test of multiple
comparisons, e.g. Friedman test. Reference: Japkowicz/Shah
(2011), Evaluating Learning Algorithms. Pages 255 ff.
Diff between Nemenyi versions 1.0 dated 2014-05-13 and 1.1 dated 2014-07-14
Description: Takes a matrix with performance measures for multiple entities (columns) over multiple domains (rows). Calculates Friedman-like ranks of the entities per domain. Sums the ranks of each classifier over all domains. Calculates the pairwise difference between the summed ranks, representing the Nemenyi-value. Looks up the corresponding p-value from the studentized range (q)-distribution.
Author: Christian Guckelsberger
Maintainer: Christian Guckelsberger
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
R/pairwise.nemenyi.test.R | 3 ++-
3 files changed, 8 insertions(+), 7 deletions(-)
Title: Isotope pattern, profile and centroid calculation for mass
spectrometry.
Diff between enviPat versions 1.8 dated 2014-06-24 and 1.9 dated 2014-07-14
Description: Fast and very memory-efficient calculation of isotope patterns,
subsequent convolution to theoretical envelopes (profiles) plus valley
detection and centroidization or intensoid calculation. Batch processing,
resolution interpolation, wrapper, adduct calculations and molecular
formula parsing.
Author: Martin Loos, Christian Gerber
Maintainer: Martin Loos
DESCRIPTION | 9 +--
MD5 | 34 ++++++------
NEWS | 5 +
R/enviPat.R | 2
src/combination.c | 143 ++++++++++++++++++++++++------------------------------
src/combination.h | 2
src/element.c | 11 ----
src/element.h | 2
src/isotope.c | 2
src/isotope.h | 2
src/main.c | 28 ++++++----
src/parse.c | 2
src/parse.h | 2
src/peak.c | 3 -
src/peak.h | 2
src/preferences.h | 5 +
src/profile.c | 27 ++++------
src/profile.h | 2
18 files changed, 136 insertions(+), 147 deletions(-)
Title: Discrete Bayesian Additive Regression Trees Sampler
Diff between dbarts versions 0.8-2 dated 2014-07-13 and 0.8-3 dated 2014-07-14
Description: Fits Bayesian additive regression trees (BART) while allowing the updating of predictors or response so that BART can be incorporated as a conditional model in a Gibbs/MH sampler. Also serves as a drop-in replacement for package BayesTree.
Author: Hugh Chipman
Maintainer: Vincent Dorie
DESCRIPTION | 8 +-
MD5 | 26 ++++----
inst/include/dbarts/cstdint.hpp | 2
src/R_interface.cpp | 72 +++++++++++-----------
src/dbarts/bartFit.cpp | 17 ++---
src/dbarts/birthDeathRule.cpp | 2
src/dbarts/changeRule.cpp | 20 +++---
src/dbarts/parameterPrior.cpp | 6 -
src/dbarts/state.cpp | 12 +--
src/dbarts/treePrior.cpp | 8 +-
src/external/io.c | 2
src/external/moments.c | 127 +++++++++++++++++++++-------------------
src/external/thread.c | 4 -
src/include/external/io.h | 15 ++++
14 files changed, 173 insertions(+), 148 deletions(-)
Title: Sparse Linear Algebra
Diff between SparseM versions 1.03 dated 2013-08-01 and 1.05 dated 2014-07-14
Description: Basic linear algebra for sparse matrices
Author: Roger Koenker
Maintainer: Roger Koenker
SparseM-1.03/SparseM/inst/ChangeLog |only
SparseM-1.03/SparseM/inst/doc/SparseM.R |only
SparseM-1.03/SparseM/inst/doc/SparseM.Rnw |only
SparseM-1.05/SparseM/DESCRIPTION | 6 +--
SparseM-1.05/SparseM/MD5 | 13 +++-----
SparseM-1.05/SparseM/NAMESPACE | 6 +--
SparseM-1.05/SparseM/R/SparseM.R | 44 +++--------------------------
SparseM-1.05/SparseM/inst/Changelog |only
SparseM-1.05/SparseM/inst/TODO |only
SparseM-1.05/SparseM/vignettes/SparseM.Rnw | 2 -
10 files changed, 18 insertions(+), 53 deletions(-)
Title: Empirical Bayes Estimation and Inference in R
Diff between REBayes versions 0.40 dated 2013-08-06 and 0.45 dated 2014-07-14
Description: Kiefer-Wolfowitz Maximum Likelihood Estimation for Mixtures
Author: Roger Koenker
Maintainer: Roger Koenker
REBayes-0.40/REBayes/R/GLVmix.R |only
REBayes-0.40/REBayes/R/WGLVmix.R |only
REBayes-0.40/REBayes/inst/MosekManual.pdf |only
REBayes-0.40/REBayes/inst/userguide.pdf |only
REBayes-0.40/REBayes/man/GLVmix.Rd |only
REBayes-0.40/REBayes/man/WGLVmix.Rd |only
REBayes-0.45/REBayes/DESCRIPTION | 8 ++---
REBayes-0.45/REBayes/MD5 | 30 +++++++++-----------
REBayes-0.45/REBayes/NAMESPACE | 2 +
REBayes-0.45/REBayes/R/GLmix.R | 11 ++++---
REBayes-0.45/REBayes/R/KWDual.R | 2 -
REBayes-0.45/REBayes/R/misc.R | 2 -
REBayes-0.45/REBayes/R/predict.R |only
REBayes-0.45/REBayes/R/rqss2.R |only
REBayes-0.45/REBayes/demo/00Index | 1
REBayes-0.45/REBayes/demo/predict.R |only
REBayes-0.45/REBayes/inst/ChangeLog | 15 ++++++++++
REBayes-0.45/REBayes/inst/README | 44 +++++++++++++++++++-----------
REBayes-0.45/REBayes/man/GLmix.Rd | 17 ++++++++++-
REBayes-0.45/REBayes/man/medde.Rd | 13 +++++---
REBayes-0.45/REBayes/man/rqss2.Rd |only
21 files changed, 96 insertions(+), 49 deletions(-)
Title: Gaussian linear models with linear covariance structure
Diff between regress versions 1.3-13 dated 2014-05-13 and 1.3-14 dated 2014-07-14
Description: Functions to fit Gaussian linear model by maximising the
residual log likelihood where the covariance structure can be
written as a linear combination of known matrices. Can be used
for multivariate models and random effects models. Easy
straight forward manner to specify random effects models,
including random interactions. Code now optimised to use
Sherman Morrison Woodbury identities for matrix inversion in
random effects models. We've added the ability to fit models
using any kernel as well as a function to return the mean and
covariance of random effects conditional on the data (BLUPs).
Author: David Clifford and Peter McCullagh. Additional contributions by
HJ Auinger.
Maintainer: David Clifford
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/regress.R | 14 +++++++++++++-
tests/OLS.r | 2 +-
4 files changed, 21 insertions(+), 9 deletions(-)
Title: Replicate and analyse InterVA4
Diff between InterVA4 versions 1.2 dated 2014-03-28 and 1.4 dated 2014-07-14
Description: The package provides an R version of the InterVA4 software for
coding cause of death from verbal autopsies. It also provides simple
graphical representation of individual and population level statistics.
Author: Zehang Li, Tyler McCormick, Sam Clark
Maintainer: Zehang Li
DESCRIPTION | 12
MD5 | 24 -
R/InterVA.R | 762 +++++++++++++++++++++++++---------------------
R/InterVA.plot.R | 180 ++++++++++
R/InterVA4_1.3-package.R |only
data/SampleInput.rda |binary
man/InterVA.Rd | 206 ++++++------
man/InterVA.plot.Rd | 87 ++---
man/InterVA.summary.Rd |only
man/InterVA4-package.Rd | 75 ++--
man/Population.summary.Rd | 128 ++++---
man/SampleInput.Rd | 33 -
man/causetext.Rd | 33 -
man/probbase.Rd | 32 -
14 files changed, 927 insertions(+), 645 deletions(-)