Title: Meta-Analysis of Diagnostic Accuracy (mada)
Diff between mada versions 0.5.5 dated 2014-01-01 and 0.5.6 dated 2014-07-23
Description: This package provides functions for diagnostic meta-analysis. Next to basic analysis and visualization the bivariate Model of Reitsma et al. (2005) that is equivalent to the HSROC of Rutter&Gatsonis (2001) can be fitted. A new approach based to diagnostic meta-analysis of Holling et al. (2012) is also available. Standard methods like summary, plot and so on are provided.
Author: Philipp Doebler
Maintainer: Philipp Doebler
DESCRIPTION | 12 ++---
MD5 | 26 ++++++------
NAMESPACE | 3 +
R/basics.R | 4 +
R/reitsma.R | 106 +++++++++++++++++++++++++++++++++------------------
build/vignette.rds |binary
data/AuditC.rda |binary
data/Dementia.rda |binary
data/IAQ.rda |binary
data/SAQ.rda |binary
data/smoking.rda |binary
inst/doc/mada.pdf |binary
man/AUC.Rd | 3 -
man/reitsma-class.Rd | 8 ++-
14 files changed, 102 insertions(+), 60 deletions(-)
Title: Correspondence Analysis Variants
Diff between CAvariants versions 2.0 dated 2014-06-26 and 2.1 dated 2014-07-23
Description: Six variants of two-way correspondence analysis can be performed,
simple ca
singly ordered ca
doubly ordered ca
non symmetrical ca
singly ordered non symmetrical ca
doubly ordered non symmetrical ca
Author: Rosaria Lombardo and Eric J Beh
Maintainer: Rosaria Lombardo
DESCRIPTION | 11 ++--
MD5 | 60 ++++++++++++------------
NAMESPACE | 3 +
R/CAvariants.R | 19 ++++---
R/caellipse.R | 24 ++++++++-
R/compsonetable.exe.R | 8 +--
R/nsca.ellipse.R | 28 +++++++++--
R/plotcacorporateplus.R | 17 ++++--
R/printcacorporateplus.R | 107 +++++++++++++++++++++++++++----------------
man/CAvariants.Rd | 8 +--
man/asbestos.Rd | 4 -
man/cabasic.Rd | 2
man/cabasicresults-class.Rd | 4 +
man/cacorporateplus-class.Rd | 4 +
man/caellipse.Rd | 12 ++++
man/compsonetable.exe.Rd | 4 -
man/compstable.exe.Rd | 2
man/docabasic.Rd | 2
man/donscabasic.Rd | 2
man/ellipse.Rd | 2
man/emerson.poly.Rd | 2
man/nsca.ellipse.Rd | 14 ++++-
man/nscabasic.Rd | 2
man/plotcacorporateplus.Rd | 2
man/plotone.Rd | 2
man/printcacorporateplus.Rd | 36 ++++++++++----
man/printwithaxes.Rd | 2
man/shopdataM.Rd | 16 ++----
man/socabasic.Rd | 2
man/sonscabasic.Rd | 2
man/trendplot.Rd | 2
31 files changed, 259 insertions(+), 146 deletions(-)
Title: Tools for Harnessing MLBAM Gameday data and Visualizing PITCHf/x
Diff between pitchRx versions 1.4 dated 2014-05-27 and 1.5 dated 2014-07-23
Description: With pitchRx, one can easily obtain Major League Baseball Advanced
Media's Gameday data (as well as store it in a remote database). The
Gameday website hosts a wealth of data in XML format, but perhaps most
interesting is PITCHf/x. Among other things, PITCHf/x data can be used to
recreate a baseball's flight path from a pitcher's hand to home plate. With
pitchRx, one can easily create animations and interactive 3D scatterplots
of the baseball's flight path. PITCHf/x data is also commonly used to
generate a static plot of baseball locations at the moment they cross home
plate. These plots, sometimes called strike-zone plots, can also refer to a
plot of event probabilities over the same region. pitchRx provides an easy
and robust way to generate strike-zone plots using the ggplot2 package.
Author: Carson Sievert
Maintainer: Carson Sievert
pitchRx-1.4/pitchRx/R/fields.R |only
pitchRx-1.4/pitchRx/R/gids.R |only
pitchRx-1.4/pitchRx/R/pitches.R |only
pitchRx-1.4/pitchRx/R/players.R |only
pitchRx-1.5/pitchRx/DESCRIPTION | 10 ++---
pitchRx-1.5/pitchRx/MD5 | 55 ++++++++++++++---------------
pitchRx-1.5/pitchRx/NAMESPACE | 3 -
pitchRx-1.5/pitchRx/NEWS | 17 ++++++++
pitchRx-1.5/pitchRx/R/data.R |only
pitchRx-1.5/pitchRx/R/scrape.R | 53 ++++++++++++++++++---------
pitchRx-1.5/pitchRx/R/strikeFX.R | 32 ++++++++--------
pitchRx-1.5/pitchRx/R/update.R | 8 ++--
pitchRx-1.5/pitchRx/data/nonMLBgids.rda |only
pitchRx-1.5/pitchRx/data/pitches.rda |binary
pitchRx-1.5/pitchRx/data/players.rda |binary
pitchRx-1.5/pitchRx/inst/scripts |only
pitchRx-1.5/pitchRx/man/animateFX.Rd | 2 -
pitchRx-1.5/pitchRx/man/export.Rd | 2 -
pitchRx-1.5/pitchRx/man/fields.Rd | 14 ++++---
pitchRx-1.5/pitchRx/man/getSnapshots.Rd | 2 -
pitchRx-1.5/pitchRx/man/gids.Rd | 12 +++---
pitchRx-1.5/pitchRx/man/interactiveFX.Rd | 2 -
pitchRx-1.5/pitchRx/man/makeUrls.Rd | 2 -
pitchRx-1.5/pitchRx/man/nonMLBgids.Rd |only
pitchRx-1.5/pitchRx/man/pitchRx.Rd | 2 -
pitchRx-1.5/pitchRx/man/pitches.Rd | 13 ++++--
pitchRx-1.5/pitchRx/man/players.Rd | 14 ++++---
pitchRx-1.5/pitchRx/man/scrape.Rd | 16 ++++++--
pitchRx-1.5/pitchRx/man/scrapeFX.Rd | 2 -
pitchRx-1.5/pitchRx/man/strikeFX.Rd | 13 +++---
pitchRx-1.5/pitchRx/man/update_db.Rd | 6 ++-
pitchRx-1.5/pitchRx/man/urlsToDataFrame.Rd | 2 -
32 files changed, 169 insertions(+), 113 deletions(-)
Title: Programmatic interface to the API serving UC Berkeley's Natural
History Data
Diff between ecoengine versions 1.3 dated 2014-04-14 and 1.4 dated 2014-07-23
Description: The ecoengine (http://ecoengine.berkeley.edu/) provides access to
more than 2 million georeferenced specimen records from the Berkeley
Natural History Museums. http://bnhm.berkeley.edu/
Author: Karthik Ram [aut, cre]
Maintainer: Karthik Ram
DESCRIPTION | 12 +++---
MD5 | 80 +++++++++++++++++++++---------------------
NAMESPACE | 7 ++-
NEWS | 7 +++
R/ecoengine_package.R | 3 +
R/ee_about.R | 7 +--
R/ee_browse_photos.R | 7 +--
R/ee_checklists.R | 16 ++++----
R/ee_footprints.R | 6 ++-
R/ee_map.R | 4 +-
R/ee_observations.R | 85 +++++++++++++++++++++++----------------------
R/ee_photos.R | 38 ++++++++++----------
R/ee_search.R | 56 ++++++++++-------------------
R/ee_sensor_aggregation.R | 20 ++++++----
R/ee_sensors.R | 68 ++++++++++++++----------------------
R/ee_sources.R | 10 +++--
R/ee_utils.R | 18 ++++++---
README.md | 4 +-
inst/Using_ecoengine.Rmd | 4 +-
man/california_counties.Rd | 2 -
man/checklist_details.Rd | 2 -
man/ecoengine.Rd | 4 +-
man/ee_about.Rd | 2 -
man/ee_cbind.Rd | 2 -
man/ee_checklists.Rd | 2 -
man/ee_footprints.Rd | 2 -
man/ee_list_sensors.Rd | 2 -
man/ee_map.Rd | 2 -
man/ee_observations.Rd | 34 +++++++++---------
man/ee_pages.Rd | 6 +--
man/ee_paginator.Rd | 10 ++---
man/ee_photos.Rd | 14 +++----
man/ee_search.Rd | 2 -
man/ee_search_obs.Rd | 6 +--
man/ee_sensor_agg.Rd | 6 +--
man/ee_sensor_data.Rd | 6 +--
man/ee_sensors.Rd | 4 +-
man/ee_sources.Rd | 2 -
man/full_sensor_list.Rd | 2 -
man/print.ecoengine.Rd | 2 -
man/view_photos.Rd | 6 +--
41 files changed, 284 insertions(+), 288 deletions(-)
Title: Simulation of simple and complex survival data
Diff between survsim versions 1.1.1 dated 2014-07-21 and 1.1.2 dated 2014-07-23
Description: Simulation of simple and complex survival data
Author: David Moriña (Centre for Research in Environmental Epidemiology, CREAL) and Albert Navarro (Universitat Autònoma de Barcelona)
Maintainer: David Moriña Soler
DESCRIPTION | 8 +-
MD5 | 14 ++--
R/print.summary.mult.ev.data.sim.R | 2
R/print.summary.rec.ev.data.sim.R | 2
R/print.summary.simple.surv.sim.R | 4 -
R/summary.mult.ev.data.sim.R | 4 -
R/summary.rec.ev.data.sim.R | 110 +++++++++++++++++--------------------
R/summary.simple.surv.sim.R | 4 -
8 files changed, 70 insertions(+), 78 deletions(-)
Title: Wrapper for several R packages and scripts to automate RNA-seq
analysis
Diff between rnaseqWrapper versions 1.0 dated 2014-07-17 and 1.0-1 dated 2014-07-23
Description: This package is designed to streamline several of the common steps for RNA-seq
analysis, including differential expression and variant discovery.
For the development build, or to contribute changes to this package,
please see our repository at https://bitbucket.org/petersmp/rnaseqwrapper/
Author: Mark Peterson
Maintainer: Mark Peterson
DESCRIPTION | 8 +++----
MD5 | 22 +++++++++----------
README.md | 49 +++++++++++++++++++++++++++++++++++++++----
man/DESeqWrapper.Rd | 4 ++-
man/calcBasicDE.Rd | 8 ++++++-
man/calcCombVals.Rd | 5 ++--
man/calcHornMatrix.Rd | 5 +++-
man/calcLogVal.Rd | 5 +++-
man/heatmap.mark.Rd | 10 +++++++-
man/mergeCountFiles.Rd | 7 ++++--
man/rnaseqWrapper-package.Rd | 4 +--
man/runGOAnalysis.Rd | 5 +++-
12 files changed, 101 insertions(+), 31 deletions(-)
More information about ReorderCluster at CRAN
Permanent link
Title: Miscellaneous Useful Functions
Diff between miscFuncs versions 1.2-4 dated 2013-12-14 and 1.2-6 dated 2014-07-23
Description: LaTeX tables, Kalman filter, web scraping, development tools,
relative risk, odds ratio
Author: Benjamin M. Taylor
Maintainer: Benjamin M. Taylor
DESCRIPTION | 8 +++---
MD5 | 47 ++++++++++++++++++++-------------------
NAMESPACE | 5 ++++
R/latextable.R | 13 +++++++++-
R/roxbc.R | 26 +++++++++++++++++++--
R/zzz.R | 2 +
inst/doc/miscFuncs.pdf |binary
man/EKFadvance.Rd | 36 +++++++++++-------------------
man/KFadvance.Rd | 47 ++++++++++++++++-----------------------
man/KFadvanceAR2.Rd | 58 +++++++++++++++++++++----------------------------
man/KFtemplates.Rd | 8 +++---
man/bin.Rd | 3 +-
man/generic.Rd | 14 +++++------
man/getstrbetween.Rd | 19 ++++++----------
man/getwikicoords.Rd | 13 +++++-----
man/latexformat.Rd | 13 +++++-----
man/latextable.Rd | 31 ++++++++++----------------
man/method.Rd | 10 ++++----
man/print22.Rd | 7 ++---
man/roxbc.Rd | 12 +++++-----
man/roxbuild.Rd |only
man/roxtext.Rd | 12 ++++------
man/timeop.Rd | 3 +-
man/twotwoinfo.Rd | 46 ++++++++++++++++----------------------
man/vdc.Rd | 6 ++---
25 files changed, 216 insertions(+), 223 deletions(-)
Title: Hierarchical Generalized Linear Models
Diff between hglm versions 2.0-4 dated 2014-01-21 and 2.0-8 dated 2014-07-23
Description: The hglm package is used to fit hierarchical generalized linear models. It can be used for linear mixed models and generalized linear mixed models with random effects for a variety of links and a variety of distributions for both the outcomes and the random effects. Fixed effects can also be fitted in the dispersion part of the mean model.
Author: Xia Shen, Moudud Alam, Lars Ronnegard
Maintainer: Xia Shen
hglm-2.0-4/hglm/data |only
hglm-2.0-4/hglm/man/QTLMAS.Rd |only
hglm-2.0-4/hglm/man/cancer.Rd |only
hglm-2.0-4/hglm/man/ohio.Rd |only
hglm-2.0-4/hglm/man/pump.Rd |only
hglm-2.0-4/hglm/man/salamander.Rd |only
hglm-2.0-4/hglm/man/seeds.Rd |only
hglm-2.0-4/hglm/man/semiconductor.Rd |only
hglm-2.0-4/hglm/vignettes/hglm-knitr.pdf |only
hglm-2.0-8/hglm/ChangeLog | 23 ++++++++
hglm-2.0-8/hglm/DESCRIPTION | 10 +--
hglm-2.0-8/hglm/MD5 | 41 +++++----------
hglm-2.0-8/hglm/NAMESPACE | 2
hglm-2.0-8/hglm/R/HL11.R | 65 ++++++++++++-------------
hglm-2.0-8/hglm/R/hglm.R | 24 ++++-----
hglm-2.0-8/hglm/R/hglm.default.R | 14 +----
hglm-2.0-8/hglm/R/likelihood.R | 4 +
hglm-2.0-8/hglm/inst/doc/hglm.Rnw | 2
hglm-2.0-8/hglm/inst/doc/hglm.pdf |binary
hglm-2.0-8/hglm/man/hglm-package.Rd | 8 +--
hglm-2.0-8/hglm/man/hglm.Rd | 14 +++++
hglm-2.0-8/hglm/vignettes/hglm-knitr-knitr.pdf |only
hglm-2.0-8/hglm/vignettes/hglm.Rnw | 2
23 files changed, 115 insertions(+), 94 deletions(-)
Title: Detecting, combining and filtering isotope, adduct and homologue
series relations in high-resolution mass spectrometry (HRMS)
data
Diff between nontarget versions 1.2 dated 2012-10-18 and 1.3 dated 2014-07-23
Description: Screening a HRMS data set for peaks related by (1) isotope patterns, (2) different adducts of the same molecule and/or (3) homologue series. The resulting isotopic pattern and adduct groups can then be combined to so-called components, with homologue series information attached. Also allows plotting and filtering HRMS data for mass defects, frequent m/z distances and components vs. non-components.
Author: Martin Loos
Maintainer: Martin Loos
nontarget-1.2/nontarget/R/nontarget-internal.R |only
nontarget-1.2/nontarget/data/adduct_list.rda |only
nontarget-1.2/nontarget/data/iso_list.rda |only
nontarget-1.2/nontarget/man/adduct_list.Rd |only
nontarget-1.2/nontarget/man/iso_list.Rd |only
nontarget-1.3/nontarget/DESCRIPTION | 18
nontarget-1.3/nontarget/MD5 | 61 -
nontarget-1.3/nontarget/NAMESPACE | 6
nontarget-1.3/nontarget/NEWS |only
nontarget-1.3/nontarget/R/adduct.search.R | 192 +++--
nontarget-1.3/nontarget/R/homol.search.R | 812 ++++++-----------------
nontarget-1.3/nontarget/R/make.isos.R | 93 +-
nontarget-1.3/nontarget/R/nontarget.R | 9
nontarget-1.3/nontarget/R/pattern.search.R | 36 -
nontarget-1.3/nontarget/R/pattern.search2.R |only
nontarget-1.3/nontarget/R/plotdefect.R | 34
nontarget-1.3/nontarget/R/plotgroup.R | 8
nontarget-1.3/nontarget/R/plothomol.R | 3
nontarget-1.3/nontarget/man/adduct.search.Rd | 30
nontarget-1.3/nontarget/man/combine.Rd | 1
nontarget-1.3/nontarget/man/deter.iso.Rd | 5
nontarget-1.3/nontarget/man/homol.search.Rd | 112 +--
nontarget-1.3/nontarget/man/make.isos.Rd | 38 -
nontarget-1.3/nontarget/man/ms.filter.Rd | 5
nontarget-1.3/nontarget/man/nontarget-package.Rd | 75 +-
nontarget-1.3/nontarget/man/pattern.search.Rd | 28
nontarget-1.3/nontarget/man/pattern.search2.Rd |only
nontarget-1.3/nontarget/man/plotdefect.Rd | 8
nontarget-1.3/nontarget/man/plotdiff.Rd | 2
nontarget-1.3/nontarget/man/plotgroup.Rd | 12
nontarget-1.3/nontarget/man/plothomol.Rd | 31
nontarget-1.3/nontarget/man/rm.sat.Rd | 5
nontarget-1.3/nontarget/src/adductCpp.cpp | 150 ++--
nontarget-1.3/nontarget/src/homologues.cpp |only
nontarget-1.3/nontarget/src/massCpp.cpp | 182 ++---
nontarget-1.3/nontarget/src/quantization.cpp |only
nontarget-1.3/nontarget/src/searchTree.cpp |only
37 files changed, 878 insertions(+), 1078 deletions(-)
Title: General Frailty models: shared, joint and nested frailty models
with prediction
Diff between frailtypack versions 2.6 dated 2014-03-24 and 2.6.1 dated 2014-07-23
Description: Frailtypack fits several classes of frailty models
using a penalized likelihood estimation on the hazard function
but also a parametric estimation. 1) A shared frailty
model (with gamma or log-normal frailty distribution) and
Cox proportional hazard model. Clustered and
recurrent survival times can be studied. 2) Additive frailty
models for proportional hazard models with two
correlated random effects (intercept random effect with random
slope). 3) Nested frailty models for hierarchically clustered
data (with 2 levels of clustering) by including two iid gamma
random effects. 4) Joint frailty models in the context of joint
modelling for recurrent events with terminal event for clustered
data or not. Prediction values are available. Left truncated (not for Joint model),
right-censored data, interval-censored data (only for Cox proportional
hazard and shared frailty model) and strata (max=2) are allowed. In each model,
the random effects have a gamma distribution, but you can switch to a log-normal
in shared and joint models. Now, you can also consider time-varying
covariates effects in Cox, shared and joint models. The package includes concordance
measures for Cox proportional hazards models and for shared frailty models.
Author: Virginie Rondeau, Juan R. Gonzalez, Yassin Mazroui, Audrey
Mauguen, Agnieszka Krol-Listwon, Amadou Diakite and Alexandre Laurent
Maintainer: Virginie Rondeau
DESCRIPTION | 10
MD5 | 75 +--
NAMESPACE | 9
NEWS | 35 +
R/Diffepoce.R |only
R/epoce.R |only
R/frailtyPenal.R | 247 ++++++-----
R/multivPenal.R | 225 +++++-----
R/plot.Diffepoce.R |only
R/plot.epoce.R |only
R/prediction.R | 2
R/print.Diffepoce.R |only
R/print.additivePenal.R | 12
R/print.epoce.R |only
R/print.frailtyPenal.R | 45 +-
R/print.jointPenal.R | 59 +-
R/print.multivPenal.R | 47 +-
R/print.nestedPenal.R | 31 -
R/waldtest.R | 2
demo/frailtypack_frailtyPenal.R | 2
demo/frailtypack_jointPenal.R | 6
demo/frailtypack_multivPenal.R | 16
man/Diffepoce.Rd |only
man/epoce.Rd |only
man/frailtyPenal.Rd | 32 -
man/frailtypack-package.Rd | 8
man/plot.Diffepoce.Rd |only
man/plot.epoce.Rd |only
man/prediction.Rd | 2
src/Adonnees.f90 | 12
src/aresidusMartingale.f90 | 259 ++++++++++-
src/epoce.f90 |only
src/frailtypack.f90 | 44 +-
src/funcpaGcpm.f90 | 29 -
src/funcpaGcpm_intcens.f90 | 9
src/funcpaGcpm_log.f90 | 20
src/funcpaGsplines_intcens.f90 | 37 -
src/funcpaGweib.f90 | 29 -
src/funcpaGweib_intcens.f90 | 9
src/joint.f90 | 66 +--
src/multiveJoint.f90 | 674 ++++++++++++++++++------------
src/nested.f90 | 874 +++++++++++++++++++---------------------
src/prediction.f90 | 49 +-
src/survival.f90 | 51 +-
44 files changed, 1712 insertions(+), 1315 deletions(-)
Title: A package for statistical analysis in epidemiology.
Diff between Epi versions 1.1.65 dated 2014-06-24 and 1.1.67 dated 2014-07-23
Description: Functions for demographic and epidemiological analysis in
the Lexis diagram, i.e. register and cohort follow-up data, in
particular representation and manipulation of multistate data - the
Lexis suite of functions.
Includes interfaces to mstate, etm and cmprsk packages.
Also contains functions for Age-Period-Cohort modeling and a
function for interval censored data and some useful functions for
tabulation and plotting, as well some epidemiological datasets.
Author: Bendix Carstensen [aut, cre],
Martyn Plummer [aut],
Esa Laara [ctb],
Michael Hills [ctb]
Maintainer: Bendix Carstensen
Epi-1.1.65/Epi/build |only
Epi-1.1.65/Epi/inst/doc/Follow-up.rnw |only
Epi-1.1.65/Epi/inst/doc/sim-Lexis.rnw |only
Epi-1.1.67/Epi/CHANGES | 16 +
Epi-1.1.67/Epi/DESCRIPTION | 21 +
Epi-1.1.67/Epi/MD5 | 47 ++--
Epi-1.1.67/Epi/NAMESPACE | 6
Epi-1.1.67/Epi/R/Relevel.R | 9
Epi-1.1.67/Epi/R/boxes.MS.R | 6
Epi-1.1.67/Epi/R/ci.lin.R | 15 +
Epi-1.1.67/Epi/R/crr.Lexis.r |only
Epi-1.1.67/Epi/R/lexis.R | 3
Epi-1.1.67/Epi/inst/doc/index.html | 4
Epi-1.1.67/Epi/inst/doc/sim-Lexis.R | 65 +++---
Epi-1.1.67/Epi/inst/doc/sim-Lexis.pdf |binary
Epi-1.1.67/Epi/man/boxes.MS.Rd | 6
Epi-1.1.67/Epi/man/ci.lin.Rd | 15 +
Epi-1.1.67/Epi/man/crr.Lexis.rd |only
Epi-1.1.67/Epi/man/transform.Lexis.Rd | 6
Epi-1.1.67/Epi/vignettes/Follow-up.R |only
Epi-1.1.67/Epi/vignettes/Follow-up.pdf |only
Epi-1.1.67/Epi/vignettes/Follow-up.rnw | 2
Epi-1.1.67/Epi/vignettes/Follow-up.tex |only
Epi-1.1.67/Epi/vignettes/sL-boxes.pdf |only
Epi-1.1.67/Epi/vignettes/sL-comp-0.pdf |only
Epi-1.1.67/Epi/vignettes/sL-mort-int.pdf |only
Epi-1.1.67/Epi/vignettes/sL-pstate0.pdf |only
Epi-1.1.67/Epi/vignettes/sL-pstatex.pdf |only
Epi-1.1.67/Epi/vignettes/sL-pstatey.pdf |only
Epi-1.1.67/Epi/vignettes/sim-Lexis.R |only
Epi-1.1.67/Epi/vignettes/sim-Lexis.pdf |only
Epi-1.1.67/Epi/vignettes/sim-Lexis.rnw | 335 ++++++++++++++++++-------------
Epi-1.1.67/Epi/vignettes/sim-Lexis.tex |only
33 files changed, 352 insertions(+), 204 deletions(-)
Title: Fetch economic and financial time series data from public
sources
Diff between pdfetch versions 0.1.3 dated 2014-04-19 and 0.1.4 dated 2014-07-23
Description: A package for downloading economic and financial time series from
public sources.
Author: Abiel Reinhart
Maintainer: Abiel Reinhart
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
NEWS | 5 +++++
R/pdfetch.R | 2 +-
4 files changed, 13 insertions(+), 8 deletions(-)
Title: Functions for the Analysis of IBD Haplo output
Diff between IBDhaploRtools versions 1.5 dated 2013-03-21 and 1.7 dated 2014-07-23
More information about IBDhaploRtools at CRAN
Description: IBDhaploRtools consists of several functions to analyze, plot, and store the output of running IBD_Haplo software package. More information regarding IBD_Haplo can be found at www.stat.washington.edu/thompson/Genepi/pangaea.shtml.
Author: Marshall Brown, Fiona Grimson
Maintainer: Fiona Grimson
IBDhaploRtools-1.5/IBDhaploRtools/R/ibdhap.compare.R |only
IBDhaploRtools-1.5/IBDhaploRtools/R/ibdhap.correct.bylen.R |only
IBDhaploRtools-1.5/IBDhaploRtools/R/ibdhap.make.states.R |only
IBDhaploRtools-1.5/IBDhaploRtools/R/ibdhap.summary.R |only
IBDhaploRtools-1.5/IBDhaploRtools/man/ibdhap.compare.Rd |only
IBDhaploRtools-1.5/IBDhaploRtools/man/ibdhap.correct.bylen.Rd |only
IBDhaploRtools-1.5/IBDhaploRtools/man/ibdhap.make.states.Rd |only
IBDhaploRtools-1.7/IBDhaploRtools/DESCRIPTION | 19
IBDhaploRtools-1.7/IBDhaploRtools/MD5 | 51 +
IBDhaploRtools-1.7/IBDhaploRtools/NAMESPACE | 6
IBDhaploRtools-1.7/IBDhaploRtools/R/ibdhap.compare.loci.R |only
IBDhaploRtools-1.7/IBDhaploRtools/R/ibdhap.compare.segs.R |only
IBDhaploRtools-1.7/IBDhaploRtools/R/ibdhap.make.calls.R |only
IBDhaploRtools-1.7/IBDhaploRtools/R/ibdhap.make.true.R |only
IBDhaploRtools-1.7/IBDhaploRtools/R/ibdhap.summary.calls.R |only
IBDhaploRtools-1.7/IBDhaploRtools/R/ibdhap.transitions.R | 8
IBDhaploRtools-1.7/IBDhaploRtools/build |only
IBDhaploRtools-1.7/IBDhaploRtools/data/ids_phased.RData |binary
IBDhaploRtools-1.7/IBDhaploRtools/data/ids_unphased.RData |binary
IBDhaploRtools-1.7/IBDhaploRtools/data/posvec.RData |binary
IBDhaploRtools-1.7/IBDhaploRtools/data/qibd_phased.RData |binary
IBDhaploRtools-1.7/IBDhaploRtools/data/qibd_unphased.RData |binary
IBDhaploRtools-1.7/IBDhaploRtools/data/trueibd_phased.RData |binary
IBDhaploRtools-1.7/IBDhaploRtools/inst/doc/IBDhaploRtools_tutorial.R |only
IBDhaploRtools-1.7/IBDhaploRtools/inst/doc/IBDhaploRtools_tutorial.Rnw | 261 +++++-----
IBDhaploRtools-1.7/IBDhaploRtools/inst/doc/IBDhaploRtools_tutorial.pdf |binary
IBDhaploRtools-1.7/IBDhaploRtools/man/IBDhaploRtools-package.Rd | 35 -
IBDhaploRtools-1.7/IBDhaploRtools/man/ibdhap.barplot.Rd | 2
IBDhaploRtools-1.7/IBDhaploRtools/man/ibdhap.compare.loci.Rd |only
IBDhaploRtools-1.7/IBDhaploRtools/man/ibdhap.compare.segs.Rd |only
IBDhaploRtools-1.7/IBDhaploRtools/man/ibdhap.make.calls.Rd |only
IBDhaploRtools-1.7/IBDhaploRtools/man/ibdhap.make.true.Rd |only
IBDhaploRtools-1.7/IBDhaploRtools/man/ibdhap.reduce.states.Rd | 43 -
IBDhaploRtools-1.7/IBDhaploRtools/man/ibdhap.summary.Rd | 19
IBDhaploRtools-1.7/IBDhaploRtools/man/ibdhap.transitions.Rd | 6
IBDhaploRtools-1.7/IBDhaploRtools/vignettes |only
36 files changed, 209 insertions(+), 241 deletions(-)
Permanent link
Title: Hierarchical and grouped time series
Diff between hts versions 4.3 dated 2014-06-10 and 4.4 dated 2014-07-23
Description: Methods for analysing and forecasting hierarchical and grouped time series.
Author: Rob J Hyndman, Earo Wang and Alan Lee with contributions from Roman A Ahmed and Han Lin Shang to earlier versions of the package
Maintainer: Rob J Hyndman
ChangeLog | 5 +++++
DESCRIPTION | 6 +++---
MD5 | 30 +++++++++++++++---------------
R/accuracy.gts.R | 11 ++++++-----
R/aggts.R | 3 +++
R/forecast.gts.R | 38 ++++++++++++++++++++++++--------------
R/gts.R | 4 +++-
R/hts.R | 4 +++-
R/summary.gts.R | 4 +++-
README.md | 2 +-
build/vignette.rds |binary
inst/doc/hts.pdf |binary
man/accuracy.gts.Rd | 5 +++--
man/aggts.Rd | 3 ++-
man/allts.Rd | 2 +-
man/forecast.gts.Rd | 31 +++++++++++++++++++++++--------
16 files changed, 95 insertions(+), 53 deletions(-)