Title: Modern measures of population differentiation
Diff between mmod versions 1.2 dated 2013-06-11 and 1.2.1 dated 2014-08-02
Description: mmod provides functions for measuring
population divergence from genotypic data
Author: David Winter
Maintainer: David Winter
mmod-1.2.1/mmod/DESCRIPTION | 20 +--
mmod-1.2.1/mmod/LICENSE |only
mmod-1.2.1/mmod/MD5 | 125 +++++------------------
mmod-1.2.1/mmod/NAMESPACE | 4
mmod-1.2.1/mmod/NEWS | 4
mmod-1.2.1/mmod/R/as.genind.DNAbin.R | 2
mmod-1.2.1/mmod/R/summarise_bootstrap.R | 2
mmod-1.2.1/mmod/build |only
mmod-1.2.1/mmod/inst/doc/mmod-demo.pdf |binary
mmod-1.2.1/mmod/man/D_Jost.Rd | 36 +++---
mmod-1.2.1/mmod/man/Gst_Hedrick.Rd | 39 +++----
mmod-1.2.1/mmod/man/Gst_Nei.Rd | 26 ++--
mmod-1.2.1/mmod/man/Phi_st_Meirmans.Rd | 33 ++----
mmod-1.2.1/mmod/man/as.genind.DNAbin.Rd | 12 +-
mmod-1.2.1/mmod/man/chao_bootstrap.Rd | 51 ++++-----
mmod-1.2.1/mmod/man/diff_stats.Rd | 63 ++++-------
mmod-1.2.1/mmod/man/diff_test.Rd | 42 +++----
mmod-1.2.1/mmod/man/dist.codom.Rd | 43 +++----
mmod-1.2.1/mmod/man/harmonic_mean.Rd | 12 +-
mmod-1.2.1/mmod/man/jacknife_populations.Rd | 22 +---
mmod-1.2.1/mmod/man/mmod.Rd | 22 +---
mmod-1.2.1/mmod/man/pairwise_D.Rd | 23 ++--
mmod-1.2.1/mmod/man/pairwise_Gst_Hedrick.Rd | 23 ++--
mmod-1.2.1/mmod/man/pairwise_Gst_Nei.Rd | 28 ++---
mmod-1.2.1/mmod/man/rgenotypes.Rd | 43 +++----
mmod-1.2.1/mmod/man/summarise_bootstrap.Rd | 53 ++++-----
mmod-1.2.1/mmod/tests/testthat |only
mmod-1.2.1/mmod/vignettes |only
mmod-1.2/mmod/inst/doc/D_Jost.html |only
mmod-1.2/mmod/inst/doc/Gst_Hedrick.html |only
mmod-1.2/mmod/inst/doc/Gst_Nei.html |only
mmod-1.2/mmod/inst/doc/Phi_st_Meirmans.html |only
mmod-1.2/mmod/inst/doc/chao_bootstrap.html |only
mmod-1.2/mmod/inst/doc/diff_stats.html |only
mmod-1.2/mmod/inst/doc/diff_test.html |only
mmod-1.2/mmod/inst/doc/dist.codom.html |only
mmod-1.2/mmod/inst/doc/harmonic_mean.html |only
mmod-1.2/mmod/inst/doc/jacknife_populations.html |only
mmod-1.2/mmod/inst/doc/mmod.html |only
mmod-1.2/mmod/inst/doc/pairwise_D.html |only
mmod-1.2/mmod/inst/doc/pairwise_Gst_Hedrick.html |only
mmod-1.2/mmod/inst/doc/pairwise_Gst_Nei.html |only
mmod-1.2/mmod/inst/staticdocs |only
mmod-1.2/mmod/inst/tests |only
mmod-1.2/mmod/tests/DESCRIPTION |only
mmod-1.2/mmod/tests/Muchi-south.gen |only
mmod-1.2/mmod/tests/test.gen |only
47 files changed, 300 insertions(+), 428 deletions(-)
Title: A smarter JSON encoder/decoder for R
Diff between jsonlite versions 0.9.9 dated 2014-07-22 and 0.9.10 dated 2014-08-02
Description: This package is a fork of the RJSONIO package by Duncan Temple
Lang. It builds on the same libjson c++ parser, but implements a smarter
mapping between JSON data and R classes. This is particularly useful when
working with JSON data from pipelines and web APIs. The vignettes describe
the behavior in great detail. In addition to drop-in replacements for
toJSON and fromJSON, the package contains functions to validate, prettify
and minify JSON, and many unit tests to verify that all edge cases are
encoded and decoded consistently for use with dynamic data in systems
and applications.
Author: Jeroen Ooms, Duncan Temple Lang, Jonathan Wallace
Maintainer: Jeroen Ooms
jsonlite-0.9.10/jsonlite/DESCRIPTION | 19 -
jsonlite-0.9.10/jsonlite/MD5 | 137 ++++++------
jsonlite-0.9.10/jsonlite/NAMESPACE | 3
jsonlite-0.9.10/jsonlite/NEWS | 5
jsonlite-0.9.10/jsonlite/R/as.iso.R | 2
jsonlite-0.9.10/jsonlite/R/as.scalar.R | 4
jsonlite-0.9.10/jsonlite/R/asJSON.AAAgeneric.R | 2
jsonlite-0.9.10/jsonlite/R/asJSON.ANY.R | 2
jsonlite-0.9.10/jsonlite/R/asJSON.Date.R | 14 -
jsonlite-0.9.10/jsonlite/R/asJSON.NULL.R | 2
jsonlite-0.9.10/jsonlite/R/asJSON.POSIXt.R | 6
jsonlite-0.9.10/jsonlite/R/asJSON.array.R | 14 -
jsonlite-0.9.10/jsonlite/R/asJSON.character.R | 12 -
jsonlite-0.9.10/jsonlite/R/asJSON.classRepresentation.R | 2
jsonlite-0.9.10/jsonlite/R/asJSON.complex.R | 8
jsonlite-0.9.10/jsonlite/R/asJSON.data.frame.R | 37 +--
jsonlite-0.9.10/jsonlite/R/asJSON.factor.R | 2
jsonlite-0.9.10/jsonlite/R/asJSON.int64.R | 2
jsonlite-0.9.10/jsonlite/R/asJSON.integer.R | 2
jsonlite-0.9.10/jsonlite/R/asJSON.list.R | 14 -
jsonlite-0.9.10/jsonlite/R/asJSON.logical.R | 14 -
jsonlite-0.9.10/jsonlite/R/asJSON.numeric.R | 16 -
jsonlite-0.9.10/jsonlite/R/asJSON.pairlist.R | 2
jsonlite-0.9.10/jsonlite/R/asJSON.raw.R | 6
jsonlite-0.9.10/jsonlite/R/asJSON.scalar.R | 4
jsonlite-0.9.10/jsonlite/R/asJSON.ts.R | 2
jsonlite-0.9.10/jsonlite/R/cleannames.R | 2
jsonlite-0.9.10/jsonlite/R/collapse.R | 2
jsonlite-0.9.10/jsonlite/R/download.R | 16 -
jsonlite-0.9.10/jsonlite/R/fixNativeSymbol.R | 10
jsonlite-0.9.10/jsonlite/R/fromJSON.R | 110 +++++----
jsonlite-0.9.10/jsonlite/R/helpfunctions.R | 6
jsonlite-0.9.10/jsonlite/R/loadpkg.R |only
jsonlite-0.9.10/jsonlite/R/makesymbol.R | 2
jsonlite-0.9.10/jsonlite/R/null2na.R | 4
jsonlite-0.9.10/jsonlite/R/pack.R | 112 ++++-----
jsonlite-0.9.10/jsonlite/R/parseJSON.R | 10
jsonlite-0.9.10/jsonlite/R/parseTimestamp.R | 26 +-
jsonlite-0.9.10/jsonlite/R/prettify.R | 6
jsonlite-0.9.10/jsonlite/R/print.R | 14 +
jsonlite-0.9.10/jsonlite/R/rbind.pages.R |only
jsonlite-0.9.10/jsonlite/R/serializeJSON.R | 10
jsonlite-0.9.10/jsonlite/R/simplify.R | 52 ++--
jsonlite-0.9.10/jsonlite/R/simplifyDataFrame.R | 58 +----
jsonlite-0.9.10/jsonlite/R/stop.R | 2
jsonlite-0.9.10/jsonlite/R/toJSON.R | 39 ++-
jsonlite-0.9.10/jsonlite/R/toMongo.R | 14 -
jsonlite-0.9.10/jsonlite/R/unbox.R | 22 -
jsonlite-0.9.10/jsonlite/R/unescape_unicode.R |only
jsonlite-0.9.10/jsonlite/R/validate.R | 8
jsonlite-0.9.10/jsonlite/build/vignette.rds |binary
jsonlite-0.9.10/jsonlite/inst/doc/json-aaquickstart.R |only
jsonlite-0.9.10/jsonlite/inst/doc/json-aaquickstart.Rmd |only
jsonlite-0.9.10/jsonlite/inst/doc/json-aaquickstart.html |only
jsonlite-0.9.10/jsonlite/inst/doc/json-apis.Rmd |only
jsonlite-0.9.10/jsonlite/inst/doc/json-apis.html |only
jsonlite-0.9.10/jsonlite/inst/doc/json-mapping.pdf |binary
jsonlite-0.9.10/jsonlite/inst/doc/json-opencpu.Rnw | 2
jsonlite-0.9.10/jsonlite/inst/doc/json-opencpu.pdf |binary
jsonlite-0.9.10/jsonlite/inst/doc/json-paging.Rmd |only
jsonlite-0.9.10/jsonlite/inst/doc/json-paging.html |only
jsonlite-0.9.10/jsonlite/inst/tests/test-libjson-escaping.R | 7
jsonlite-0.9.10/jsonlite/inst/tests/test-libjson-utf8.R | 26 --
jsonlite-0.9.10/jsonlite/inst/tests/test-toJSON-dataframe.R | 15 +
jsonlite-0.9.10/jsonlite/man/fromJSON.Rd | 60 +++--
jsonlite-0.9.10/jsonlite/man/rbind.pages.Rd |only
jsonlite-0.9.10/jsonlite/man/serializeJSON.Rd | 3
jsonlite-0.9.10/jsonlite/man/unbox.Rd | 2
jsonlite-0.9.10/jsonlite/src/libjson/Source/JSONWorker.cpp | 13 +
jsonlite-0.9.10/jsonlite/vignettes/json-aaquickstart.Rmd |only
jsonlite-0.9.10/jsonlite/vignettes/json-apis.Rmd |only
jsonlite-0.9.10/jsonlite/vignettes/json-apis.Rmd.orig |only
jsonlite-0.9.10/jsonlite/vignettes/json-opencpu.Rnw | 2
jsonlite-0.9.10/jsonlite/vignettes/json-paging.Rmd |only
jsonlite-0.9.10/jsonlite/vignettes/json-paging.Rmd.orig |only
jsonlite-0.9.10/jsonlite/vignettes/readme.txt |only
jsonlite-0.9.9/jsonlite/inst/doc/json-apis.R |only
jsonlite-0.9.9/jsonlite/inst/doc/json-apis.Rnw |only
jsonlite-0.9.9/jsonlite/inst/doc/json-apis.pdf |only
jsonlite-0.9.9/jsonlite/vignettes/json-apis.Rnw |only
80 files changed, 535 insertions(+), 453 deletions(-)
Title: Delaunay Triangulation and Dirichlet (Voronoi) Tessellation.
Diff between deldir versions 0.1-5 dated 2014-02-01 and 0.1-6 dated 2014-08-02
Description: Calculates the Delaunay triangulation and the Dirichlet
or Voronoi tessellation (with respect to the entire plane) of
a planar point set. Plots triangulations and tessellations in
various ways. Clips tessellations to sub-windows. Calculates
perimeters of tessellations.
Author: Rolf Turner
Maintainer: Rolf Turner
ChangeLog | 30 +++++++++++++++++++++++++-
DESCRIPTION | 8 +++----
MD5 | 20 ++++++++---------
R/plot.tile.list.R | 12 +++++-----
inst/ratfor/dirout.r | 46 +++++++++++++++++++++++------------------
inst/ratfor/dirseg.r | 46 +++++++++++++++++++++--------------------
inst/ratfor/dldins.r | 56 +++++++++++++++++++++++++++++---------------------
man/plot.tile.list.Rd | 26 ++++++++++++++++-------
src/dirout.f | 27 ++++++++++++++----------
src/dirseg.f | 31 ++++++++++++++++-----------
src/dldins.f | 38 +++++++++++++++++++++------------
11 files changed, 208 insertions(+), 132 deletions(-)
Title: Read, write, format Excel 2007 and Excel 97/2000/XP/2003 files
Diff between xlsx versions 0.5.5 dated 2013-12-10 and 0.5.7 dated 2014-08-02
Description: Provide R functions to read/write/format Excel 2007 and Excel 97/2000/XP/2003 file formats.
Author: Adrian A. Dragulescu
Maintainer: Adrian A. Dragulescu
DESCRIPTION | 12 -
MD5 | 48 +++---
NEWS | 34 ++++
R/CellStyle.R | 2
R/NamedRanges.R | 51 +++---
R/Row.R | 17 ++
R/addDataFrame.R | 21 +-
R/otherEffects.R | 14 +
R/read.xlsx.R | 5
R/read.xlsx2.R | 5
R/utilities.R | 37 +++-
R/write.xlsx.R | 19 +-
build/vignette.rds |binary
inst/doc/xlsx.pdf |binary
inst/tests/lib_test_issues.R | 339 +++++++++++++++++++++++++++++++++++++------
inst/tests/lib_tests_xlsx.R | 54 ++----
man/Border.Rd | 3
man/CellBlock.Rd | 12 +
man/Fill.Rd | 6
man/Font.Rd | 5
man/OtherEffects.Rd | 11 +
man/Row.Rd | 14 +
man/addDataFrame.Rd | 3
man/read.xlsx.Rd | 16 +-
man/xlsx-package.Rd | 8 -
25 files changed, 557 insertions(+), 179 deletions(-)
Title: Getting to the Bottom, A Package for Learning Optimization
Methods
Diff between gettingtothebottom versions 2.0 dated 2014-03-10 and 3.0 dated 2014-08-02
More information about gettingtothebottom at CRAN
Description: Getting to the Bottom is a companion package for the "Getting to
the Bottom" optimization methods series at Statisticsviews.com. The
package contains data and code to reproduce the examples in the articles.
Author: Jocelyn T. Chi
Maintainer: Jocelyn T. Chi
DESCRIPTION | 12 +--
MD5 | 98 +++++++++++++++-----------
NAMESPACE | 14 +++
NEWS | 7 +
R/dataset-descriptions.R | 68 +++++++++++++++++-
R/gradientdescent.R | 23 ++++--
R/linearprogramming.R |only
R/mmalgorithm.R | 2
README | 7 +
data/baltimoreyouth.RData |binary
data/datalist | 2
data/dietproblem.RData |only
data/engel.RData |only
data/moviebudgets.RData |binary
data/movieratings.RData |binary
man/baltimoreyouth.Rd | 149 ++++++++++++++--------------------------
man/check_func.Rd |only
man/diff_norm.Rd | 15 +---
man/engel.Rd |only
man/example.alpha.Rd | 12 +--
man/example.quadratic.approx.Rd | 15 +---
man/gdescent.Rd | 61 ++++++++--------
man/generate_data.Rd |only
man/generate_nnm.Rd | 12 +--
man/generate_sparse_data.Rd |only
man/init.lambda.Rd | 12 +--
man/ladlp.Rd |only
man/makeLambdaseq.Rd | 14 +--
man/makeOmega.Rd | 16 ++--
man/makeY.Rd | 14 +--
man/makeZ.Rd | 11 +-
man/make_noise.Rd |only
man/matrixcomplete.Rd | 30 +++-----
man/moviebudgets.Rd | 33 +++-----
man/movieratings.Rd | 29 +++----
man/nnls_mm.Rd | 17 ++--
man/nutrition.Rd |only
man/plot_check.Rd |only
man/plot_gradient.Rd | 12 +--
man/plot_iterates.Rd | 12 +--
man/plot_loss.Rd | 12 +--
man/plot_nnm.Rd | 9 +-
man/plot_nnm_coef.Rd | 8 +-
man/plot_nnm_obj.Rd | 16 ++--
man/plot_nnm_reconstruction.Rd | 12 +--
man/plot_nnm_truth.Rd | 12 +--
man/plot_quantreg.Rd |only
man/plot_quantreg_noisy.Rd |only
man/plot_softhreshold.Rd | 16 +---
man/plot_solpaths_error.Rd | 15 +---
man/plot_solutionpaths.Rd | 10 +-
man/plot_spect.Rd | 18 ++--
man/quantreg.Rd |only
man/quantreglp.Rd |only
man/softhreshold.Rd | 12 +--
man/solutionpaths.Rd | 31 +++-----
man/stigler.Rd |only
man/testmatrix.Rd | 16 ++--
58 files changed, 457 insertions(+), 427 deletions(-)
Permanent link
Title: Circular visualization in R
Diff between circlize versions 0.0.9 dated 2014-07-11 and 0.1.0 dated 2014-08-02
Description: circlize implements circular visualization
(http://circos.ca/) in R. Due to the natural born feature of R to draw statistical
graphics, this package can provide a more general and flexible way to
visualize huge information in a circular style.
Author: Zuguang Gu
Maintainer: Zuguang Gu
circlize-0.0.9/circlize/inst/doc/draw-ideogram.R |only
circlize-0.0.9/circlize/inst/doc/draw-ideogram.Rnw |only
circlize-0.0.9/circlize/inst/doc/draw-ideogram.pdf |only
circlize-0.0.9/circlize/inst/doc/draw-phylogenetic-tree.R |only
circlize-0.0.9/circlize/inst/doc/draw-phylogenetic-tree.Rnw |only
circlize-0.0.9/circlize/inst/doc/draw-phylogenetic-tree.pdf |only
circlize-0.0.9/circlize/inst/doc/draw-relations.R |only
circlize-0.0.9/circlize/inst/doc/draw-relations.Rnw |only
circlize-0.0.9/circlize/inst/doc/draw-relations.pdf |only
circlize-0.0.9/circlize/inst/doc/genomic-plot.R |only
circlize-0.0.9/circlize/inst/doc/genomic-plot.Rnw |only
circlize-0.0.9/circlize/inst/doc/genomic-plot.pdf |only
circlize-0.0.9/circlize/inst/doc/interesting-graphics.R |only
circlize-0.0.9/circlize/inst/doc/interesting-graphics.Rnw |only
circlize-0.0.9/circlize/inst/doc/interesting-graphics.pdf |only
circlize-0.0.9/circlize/vignettes/draw-ideogram.Rnw |only
circlize-0.0.9/circlize/vignettes/draw-phylogenetic-tree.Rnw |only
circlize-0.0.9/circlize/vignettes/draw-relations.Rnw |only
circlize-0.0.9/circlize/vignettes/genomic-plot.Rnw |only
circlize-0.0.9/circlize/vignettes/interesting-graphics.Rnw |only
circlize-0.0.9/circlize/vignettes/src/intro-13-adjlink.R |only
circlize-0.1.0/circlize/DESCRIPTION | 14
circlize-0.1.0/circlize/MD5 | 251 +++---
circlize-0.1.0/circlize/NAMESPACE | 95 +-
circlize-0.1.0/circlize/NEWS | 150 ++--
circlize-0.1.0/circlize/R/chordDiagram.R | 94 +-
circlize-0.1.0/circlize/R/genomic.R | 350 ++++++---
circlize-0.1.0/circlize/R/genomic_utils.R | 12
circlize-0.1.0/circlize/R/global.R | 225 ++----
circlize-0.1.0/circlize/R/link.R | 56 +
circlize-0.1.0/circlize/R/overview.R | 62 -
circlize-0.1.0/circlize/R/plot.R | 315 +++++---
circlize-0.1.0/circlize/R/utils.R | 43 -
circlize-0.1.0/circlize/build/vignette.rds |binary
circlize-0.1.0/circlize/inst/doc/circlize.R | 84 +-
circlize-0.1.0/circlize/inst/doc/circlize.Rnw | 372 +++++-----
circlize-0.1.0/circlize/inst/doc/circlize.pdf |binary
circlize-0.1.0/circlize/inst/doc/circular_phylogenetic_tree.R |only
circlize-0.1.0/circlize/inst/doc/circular_phylogenetic_tree.Rnw |only
circlize-0.1.0/circlize/inst/doc/circular_phylogenetic_tree.pdf |only
circlize-0.1.0/circlize/inst/doc/circular_view_of_tables.R |only
circlize-0.1.0/circlize/inst/doc/circular_view_of_tables.Rnw |only
circlize-0.1.0/circlize/inst/doc/circular_view_of_tables.pdf |only
circlize-0.1.0/circlize/inst/doc/draw_ideogram.R |only
circlize-0.1.0/circlize/inst/doc/draw_ideogram.Rnw |only
circlize-0.1.0/circlize/inst/doc/draw_ideogram.pdf |only
circlize-0.1.0/circlize/inst/doc/genomic_plot.R |only
circlize-0.1.0/circlize/inst/doc/genomic_plot.Rnw |only
circlize-0.1.0/circlize/inst/doc/genomic_plot.pdf |only
circlize-0.1.0/circlize/inst/doc/interesting_graphics.R |only
circlize-0.1.0/circlize/inst/doc/interesting_graphics.Rnw |only
circlize-0.1.0/circlize/inst/doc/interesting_graphics.pdf |only
circlize-0.1.0/circlize/man/chordDiagram.rd | 164 +++-
circlize-0.1.0/circlize/man/circlize-package.rd | 121 +--
circlize-0.1.0/circlize/man/circlize.rd | 83 +-
circlize-0.1.0/circlize/man/circos.axis.rd | 165 +++-
circlize-0.1.0/circlize/man/circos.clear.rd | 50 -
circlize-0.1.0/circlize/man/circos.genomicDensity.rd | 103 +-
circlize-0.1.0/circlize/man/circos.genomicInitialize.rd | 107 +-
circlize-0.1.0/circlize/man/circos.genomicLines.rd | 151 ++--
circlize-0.1.0/circlize/man/circos.genomicLink.rd | 106 +-
circlize-0.1.0/circlize/man/circos.genomicPoints.rd | 136 ++-
circlize-0.1.0/circlize/man/circos.genomicPosTransformLines.rd | 122 ++-
circlize-0.1.0/circlize/man/circos.genomicRainfall.rd | 95 +-
circlize-0.1.0/circlize/man/circos.genomicRect.rd | 173 +++-
circlize-0.1.0/circlize/man/circos.genomicText.rd | 114 +--
circlize-0.1.0/circlize/man/circos.genomicTrackPlotRegion.rd | 90 +-
circlize-0.1.0/circlize/man/circos.info.rd | 79 +-
circlize-0.1.0/circlize/man/circos.initialize.rd | 88 +-
circlize-0.1.0/circlize/man/circos.initializeWithIdeogram.rd | 121 ++-
circlize-0.1.0/circlize/man/circos.lines.rd | 137 ++-
circlize-0.1.0/circlize/man/circos.link.rd | 140 ++-
circlize-0.1.0/circlize/man/circos.par.rd | 86 +-
circlize-0.1.0/circlize/man/circos.points.rd | 82 +-
circlize-0.1.0/circlize/man/circos.polygon.rd | 97 +-
circlize-0.1.0/circlize/man/circos.rect.rd | 82 +-
circlize-0.1.0/circlize/man/circos.text.rd | 128 ++-
circlize-0.1.0/circlize/man/circos.trackHist.rd | 114 +--
circlize-0.1.0/circlize/man/circos.trackLines.rd | 94 +-
circlize-0.1.0/circlize/man/circos.trackPlotRegion.rd | 116 +--
circlize-0.1.0/circlize/man/circos.trackPoints.rd | 76 +-
circlize-0.1.0/circlize/man/circos.trackText.rd | 84 +-
circlize-0.1.0/circlize/man/circos.updatePlotRegion.rd | 72 -
circlize-0.1.0/circlize/man/colorRamp2.rd | 74 -
circlize-0.1.0/circlize/man/cytoband.col.rd | 60 -
circlize-0.1.0/circlize/man/draw.sector.rd | 127 ++-
circlize-0.1.0/circlize/man/generateRandomBed.rd | 63 -
circlize-0.1.0/circlize/man/genomicDensity.rd | 75 +-
circlize-0.1.0/circlize/man/get.all.sector.index.rd | 56 -
circlize-0.1.0/circlize/man/get.all.track.index.rd |only
circlize-0.1.0/circlize/man/get.cell.meta.data.rd | 118 +--
circlize-0.1.0/circlize/man/get.current.chromosome.rd | 56 -
circlize-0.1.0/circlize/man/getI.rd | 60 -
circlize-0.1.0/circlize/man/highlight.chromosome.rd | 113 ++-
circlize-0.1.0/circlize/man/posTransform.default.rd | 105 ++
circlize-0.1.0/circlize/man/posTransform.text.rd |only
circlize-0.1.0/circlize/man/rainfallTransform.rd | 63 -
circlize-0.1.0/circlize/man/read.cytoband.rd | 90 +-
circlize-0.1.0/circlize/man/reverse.circlize.rd |only
circlize-0.1.0/circlize/man/show.index.rd | 46 -
circlize-0.1.0/circlize/vignettes/circlize.Rnw | 372 +++++-----
circlize-0.1.0/circlize/vignettes/circular_phylogenetic_tree.Rnw |only
circlize-0.1.0/circlize/vignettes/circular_view_of_tables.Rnw |only
circlize-0.1.0/circlize/vignettes/draw_ideogram.Rnw |only
circlize-0.1.0/circlize/vignettes/genomic_plot.Rnw |only
circlize-0.1.0/circlize/vignettes/interesting_graphics.Rnw |only
circlize-0.1.0/circlize/vignettes/src/chordDiagram-01-basic.R | 4
circlize-0.1.0/circlize/vignettes/src/chordDiagram-02-color.R | 4
circlize-0.1.0/circlize/vignettes/src/chordDiagram-03-advanced.R | 7
circlize-0.1.0/circlize/vignettes/src/chordDiagram-04-other.R | 7
circlize-0.1.0/circlize/vignettes/src/chordDiagram-05-compare.R |only
circlize-0.1.0/circlize/vignettes/src/genomic-01-circos.initializeWithIdeogram.R | 3
circlize-0.1.0/circlize/vignettes/src/genomic-02-customize_ideogram.R | 5
circlize-0.1.0/circlize/vignettes/src/genomic-03-TPgenemodel.R | 5
circlize-0.1.0/circlize/vignettes/src/genomic-04-genomicTrackPlotRegion.R | 3
circlize-0.1.0/circlize/vignettes/src/genomic-05-genomicLink.R | 4
circlize-0.1.0/circlize/vignettes/src/genomic-06-highlight.chromosome.R | 4
circlize-0.1.0/circlize/vignettes/src/genomic-07-posTransformLines.R | 21
circlize-0.1.0/circlize/vignettes/src/genomic-07-posTransformLinesText.R |only
circlize-0.1.0/circlize/vignettes/src/genomic-08-rainfallplot.R | 4
circlize-0.1.0/circlize/vignettes/src/ideogram-01-simple.R | 7
circlize-0.1.0/circlize/vignettes/src/intro-00-correspondence.R | 5
circlize-0.1.0/circlize/vignettes/src/intro-01-glance.R | 4
circlize-0.1.0/circlize/vignettes/src/intro-02-order.R | 5
circlize-0.1.0/circlize/vignettes/src/intro-03-transformation.R | 13
circlize-0.1.0/circlize/vignettes/src/intro-04-coordinate.R | 5
circlize-0.1.0/circlize/vignettes/src/intro-05-factor.R | 5
circlize-0.1.0/circlize/vignettes/src/intro-05-sectorwidth.R | 6
circlize-0.1.0/circlize/vignettes/src/intro-06-region.R | 7
circlize-0.1.0/circlize/vignettes/src/intro-07-direction.R | 7
circlize-0.1.0/circlize/vignettes/src/intro-08-lines.R | 7
circlize-0.1.0/circlize/vignettes/src/intro-08-linescurve.R | 5
circlize-0.1.0/circlize/vignettes/src/intro-09-text-niceFacing.R |only
circlize-0.1.0/circlize/vignettes/src/intro-09-text.R | 26
circlize-0.1.0/circlize/vignettes/src/intro-10-smooth.R | 8
circlize-0.1.0/circlize/vignettes/src/intro-11-axis.R | 21
circlize-0.1.0/circlize/vignettes/src/intro-12-link.R | 21
circlize-0.1.0/circlize/vignettes/src/intro-14-hist.R | 5
circlize-0.1.0/circlize/vignettes/src/intro-15-heatmap.R | 6
circlize-0.1.0/circlize/vignettes/src/intro-16-combine.R | 7
circlize-0.1.0/circlize/vignettes/src/intro-16-highlight.R | 7
circlize-0.1.0/circlize/vignettes/src/intro-17-part.R | 5
circlize-0.1.0/circlize/vignettes/src/intro-18-part2.R | 7
circlize-0.1.0/circlize/vignettes/src/intro-19-nested.R | 14
circlize-0.1.0/circlize/vignettes/src/intro-20-seperated.R | 21
circlize-0.1.0/circlize/vignettes/src/intro-21-diffradius.R | 5
circlize-0.1.0/circlize/vignettes/src/intro-22-outside.R | 7
circlize-0.1.0/circlize/vignettes/src/intro-23-layout.R | 7
circlize-0.1.0/circlize/vignettes/src/phylogenetic_tree.R | 19
circlize-0.1.0/circlize/vignettes/src/relation-02-table.R | 20
150 files changed, 4434 insertions(+), 2896 deletions(-)
Title: Gene Set Analysis Exploiting Pathway Topology
Diff between topologyGSA versions 1.4.3 dated 2014-03-26 and 1.4.4 dated 2014-08-02
Description: Using Gaussian graphical models we propose a novel approach to
perform pathway analysis using gene expression. Given the
structure of a graph (a pathway) we introduce two statistical
tests to compare the mean and the concentration matrices between
two groups. Specifically, these tests can be performed on the
graph and on its connected components (cliques).
Author: Sofia Massa, Gabriele Sales
Maintainer: Gabriele Sales
COPYING | 147 ++++++++++++++++++++++++++++++++---------------------------
DESCRIPTION | 12 ++--
MD5 | 14 +++--
NAMESPACE | 4 +
R/cliques.R | 15 +++++-
R/params.R | 2
R/pathway.R | 40 ++++++++++------
R/print.R |only
man/print.Rd |only
9 files changed, 136 insertions(+), 98 deletions(-)
Title: Bridging the gap between qualitative data and quantitative
analysis
Diff between qdap versions 2.1.0 dated 2014-06-15 and 2.1.1 dated 2014-08-02
Description: This package automates many of the tasks associated with
quantitative discourse analysis of transcripts containing discourse
including frequency counts of sentence types, words, sentences, turns of
talk, syllables and other assorted analysis tasks. The package
provides parsing tools for preparing transcript data. Many functions
enable the user to aggregate data by any number of grouping variables,
providing analysis and seamless integration with other R packages that
undertake higher level analysis and visualization of text. This affords
the user a more efficient and targeted analysis. qdap is designed for
transcript analysis, however, many functions are applicable to other areas
of Text Mining/Natural Language Processing.
Author: Bryan Goodrich [ctb],
Dason Kurkiewicz [ctb],
Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker
qdap-2.1.0/qdap/R/is.dp.R |only
qdap-2.1.1/qdap/DESCRIPTION | 17
qdap-2.1.1/qdap/MD5 | 864 +++++-----
qdap-2.1.1/qdap/NAMESPACE | 91 +
qdap-2.1.1/qdap/NEWS | 158 +
qdap-2.1.1/qdap/R/Network.R | 6
qdap-2.1.1/qdap/R/all_words.R | 1
qdap-2.1.1/qdap/R/as.tdm.R | 346 +++-
qdap-2.1.1/qdap/R/automated_readability_index.R | 44
qdap-2.1.1/qdap/R/bag_o_words.R | 50
qdap-2.1.1/qdap/R/bracketX.R | 10
qdap-2.1.1/qdap/R/chaining.R |only
qdap-2.1.1/qdap/R/check_spelling.R |only
qdap-2.1.1/qdap/R/check_text.R |only
qdap-2.1.1/qdap/R/clean.R | 6
qdap-2.1.1/qdap/R/cm_df.transcript.R | 2
qdap-2.1.1/qdap/R/cm_range2long.R | 6
qdap-2.1.1/qdap/R/cm_time2long.R | 25
qdap-2.1.1/qdap/R/colSplit.R | 12
qdap-2.1.1/qdap/R/colcomb2class.R | 2
qdap-2.1.1/qdap/R/comma_spacer.R |only
qdap-2.1.1/qdap/R/cumulative.R |only
qdap-2.1.1/qdap/R/discourse_map.R | 20
qdap-2.1.1/qdap/R/dispersion_plot.R | 62
qdap-2.1.1/qdap/R/dissimilarity.R | 2
qdap-2.1.1/qdap/R/diversity.R | 1
qdap-2.1.1/qdap/R/end_mark.R | 178 ++
qdap-2.1.1/qdap/R/exclude.R | 104 -
qdap-2.1.1/qdap/R/formality.R | 240 ++
qdap-2.1.1/qdap/R/gantt.R | 2
qdap-2.1.1/qdap/R/gantt_plot.R | 2
qdap-2.1.1/qdap/R/igraph_params.R | 2
qdap-2.1.1/qdap/R/incomplete_replace.R | 2
qdap-2.1.1/qdap/R/is.global.R | 4
qdap-2.1.1/qdap/R/multigsub.R | 2
qdap-2.1.1/qdap/R/name2sex.R | 35
qdap-2.1.1/qdap/R/ngrams.R | 2
qdap-2.1.1/qdap/R/object_pronoun_type.R |only
qdap-2.1.1/qdap/R/phrase_net.R | 34
qdap-2.1.1/qdap/R/polarity.R | 361 ++++
qdap-2.1.1/qdap/R/pronoun_type.R |only
qdap-2.1.1/qdap/R/qdap_df.R |only
qdap-2.1.1/qdap/R/random_sent.R |only
qdap-2.1.1/qdap/R/read.transcript.R | 7
qdap-2.1.1/qdap/R/replace_number.R | 8
qdap-2.1.1/qdap/R/replace_ordinal.R |only
qdap-2.1.1/qdap/R/sentSplit.R | 26
qdap-2.1.1/qdap/R/subject_pronoun_type.R |only
qdap-2.1.1/qdap/R/syllable_sum.R | 273 +++
qdap-2.1.1/qdap/R/synonyms.R | 13
qdap-2.1.1/qdap/R/utils.R | 128 +
qdap-2.1.1/qdap/R/weight.R |only
qdap-2.1.1/qdap/R/wfm.R | 257 ++
qdap-2.1.1/qdap/R/word_proximity.R | 21
qdap-2.1.1/qdap/R/word_stats.R | 27
qdap-2.1.1/qdap/README.md | 12
qdap-2.1.1/qdap/build/vignette.rds |binary
qdap-2.1.1/qdap/data/DATA.SPLIT.rda |binary
qdap-2.1.1/qdap/data/DATA.rda |binary
qdap-2.1.1/qdap/data/DATA2.rda |binary
qdap-2.1.1/qdap/data/env.syl.rda |binary
qdap-2.1.1/qdap/data/hamlet.rda |binary
qdap-2.1.1/qdap/data/mraja1.rda |binary
qdap-2.1.1/qdap/data/mraja1spl.rda |binary
qdap-2.1.1/qdap/data/pres_debate_raw2012.rda |binary
qdap-2.1.1/qdap/data/pres_debates2012.rda |binary
qdap-2.1.1/qdap/data/raj.act.1.rda |binary
qdap-2.1.1/qdap/data/raj.act.1POS.rda |binary
qdap-2.1.1/qdap/data/raj.act.2.rda |binary
qdap-2.1.1/qdap/data/raj.act.3.rda |binary
qdap-2.1.1/qdap/data/raj.act.4.rda |binary
qdap-2.1.1/qdap/data/raj.act.5.rda |binary
qdap-2.1.1/qdap/data/raj.demographics.rda |binary
qdap-2.1.1/qdap/data/raj.rda |binary
qdap-2.1.1/qdap/data/rajPOS.rda |binary
qdap-2.1.1/qdap/data/rajSPLIT.rda |binary
qdap-2.1.1/qdap/data/raw.time.span.rda |binary
qdap-2.1.1/qdap/data/sample.time.span.rda |binary
qdap-2.1.1/qdap/inst/CITATION | 4
qdap-2.1.1/qdap/inst/Rmd_vignette/data/poldat4.rds |only
qdap-2.1.1/qdap/inst/Rmd_vignette/qdap_vignette.Rmd | 77
qdap-2.1.1/qdap/inst/doc/cleaning_and_debugging.R |only
qdap-2.1.1/qdap/inst/doc/cleaning_and_debugging.Rnw |only
qdap-2.1.1/qdap/inst/doc/cleaning_and_debugging.pdf |only
qdap-2.1.1/qdap/inst/doc/tm_package_compatibility.R | 1
qdap-2.1.1/qdap/inst/doc/tm_package_compatibility.Rnw | 42
qdap-2.1.1/qdap/inst/doc/tm_package_compatibility.pdf |binary
qdap-2.1.1/qdap/man/Animate.Rd | 2
qdap-2.1.1/qdap/man/Animate.discourse_map.Rd | 2
qdap-2.1.1/qdap/man/Animate.formality.Rd | 2
qdap-2.1.1/qdap/man/Animate.gantt.Rd | 2
qdap-2.1.1/qdap/man/Animate.gantt_plot.Rd | 2
qdap-2.1.1/qdap/man/Animate.polarity.Rd | 2
qdap-2.1.1/qdap/man/DATA.Rd | 2
qdap-2.1.1/qdap/man/DATA.SPLIT.Rd | 2
qdap-2.1.1/qdap/man/DATA2.Rd | 2
qdap-2.1.1/qdap/man/Dissimilarity.Rd | 4
qdap-2.1.1/qdap/man/Filter.Rd | 2
qdap-2.1.1/qdap/man/NAer.Rd | 2
qdap-2.1.1/qdap/man/Network.Rd | 2
qdap-2.1.1/qdap/man/Network.formality.Rd | 4
qdap-2.1.1/qdap/man/Network.polarity.Rd | 4
qdap-2.1.1/qdap/man/Readability.Rd | 2
qdap-2.1.1/qdap/man/Search.Rd | 2
qdap-2.1.1/qdap/man/Title.Rd | 2
qdap-2.1.1/qdap/man/Trim.Rd | 2
qdap-2.1.1/qdap/man/Word_Frequency_Matrix.Rd | 33
qdap-2.1.1/qdap/man/addNetwork.Rd | 4
qdap-2.1.1/qdap/man/adjacency_matrix.Rd | 2
qdap-2.1.1/qdap/man/all_words.Rd | 2
qdap-2.1.1/qdap/man/as.tdm.Rd | 46
qdap-2.1.1/qdap/man/bag_o_words.Rd | 21
qdap-2.1.1/qdap/man/beg2char.Rd | 2
qdap-2.1.1/qdap/man/blank2NA.Rd | 2
qdap-2.1.1/qdap/man/bracketX.Rd | 12
qdap-2.1.1/qdap/man/build_qdap_vignette.Rd | 2
qdap-2.1.1/qdap/man/capitalizer.Rd | 2
qdap-2.1.1/qdap/man/chain.Rd |only
qdap-2.1.1/qdap/man/check_spelling.Rd |only
qdap-2.1.1/qdap/man/check_spelling_interactive.character.Rd |only
qdap-2.1.1/qdap/man/check_spelling_interactive.check_spelling.Rd |only
qdap-2.1.1/qdap/man/check_spelling_interactive.factor.Rd |only
qdap-2.1.1/qdap/man/check_text.Rd |only
qdap-2.1.1/qdap/man/clean.Rd | 6
qdap-2.1.1/qdap/man/cm_2long.Rd | 2
qdap-2.1.1/qdap/man/cm_code.blank.Rd | 2
qdap-2.1.1/qdap/man/cm_code.combine.Rd | 2
qdap-2.1.1/qdap/man/cm_code.exclude.Rd | 2
qdap-2.1.1/qdap/man/cm_code.overlap.Rd | 2
qdap-2.1.1/qdap/man/cm_code.transform.Rd | 2
qdap-2.1.1/qdap/man/cm_combine.dummy.Rd | 2
qdap-2.1.1/qdap/man/cm_df.fill.Rd | 2
qdap-2.1.1/qdap/man/cm_df.temp.Rd | 2
qdap-2.1.1/qdap/man/cm_df.transcript.Rd | 4
qdap-2.1.1/qdap/man/cm_df2long.Rd | 2
qdap-2.1.1/qdap/man/cm_distance.Rd | 2
qdap-2.1.1/qdap/man/cm_dummy2long.Rd | 2
qdap-2.1.1/qdap/man/cm_long2dummy.Rd | 2
qdap-2.1.1/qdap/man/cm_range.temp.Rd | 2
qdap-2.1.1/qdap/man/cm_range2long.Rd | 8
qdap-2.1.1/qdap/man/cm_time.temp.Rd | 2
qdap-2.1.1/qdap/man/cm_time2long.Rd | 27
qdap-2.1.1/qdap/man/colSplit.Rd | 2
qdap-2.1.1/qdap/man/colcomb2class.Rd | 4
qdap-2.1.1/qdap/man/colsplit2df.Rd | 2
qdap-2.1.1/qdap/man/comma_spacer.Rd |only
qdap-2.1.1/qdap/man/common.Rd | 2
qdap-2.1.1/qdap/man/common.list.Rd | 2
qdap-2.1.1/qdap/man/condense.Rd | 2
qdap-2.1.1/qdap/man/counts.Rd | 2
qdap-2.1.1/qdap/man/counts.SMOG.Rd | 2
qdap-2.1.1/qdap/man/counts.automated_readability_index.Rd | 2
qdap-2.1.1/qdap/man/counts.character_table.Rd | 2
qdap-2.1.1/qdap/man/counts.coleman_liau.Rd | 2
qdap-2.1.1/qdap/man/counts.end_mark_by.Rd | 2
qdap-2.1.1/qdap/man/counts.flesch_kincaid.Rd | 2
qdap-2.1.1/qdap/man/counts.formality.Rd | 2
qdap-2.1.1/qdap/man/counts.fry.Rd | 2
qdap-2.1.1/qdap/man/counts.linsear_write.Rd | 2
qdap-2.1.1/qdap/man/counts.object_pronoun_type.Rd |only
qdap-2.1.1/qdap/man/counts.polarity.Rd | 2
qdap-2.1.1/qdap/man/counts.pos.Rd | 2
qdap-2.1.1/qdap/man/counts.pos_by.Rd | 2
qdap-2.1.1/qdap/man/counts.pronoun_type.Rd |only
qdap-2.1.1/qdap/man/counts.question_type.Rd | 2
qdap-2.1.1/qdap/man/counts.subject_pronoun_type.Rd |only
qdap-2.1.1/qdap/man/counts.termco.Rd | 2
qdap-2.1.1/qdap/man/counts.word_stats.Rd | 2
qdap-2.1.1/qdap/man/cumulative.Rd |only
qdap-2.1.1/qdap/man/data_viewing.Rd | 2
qdap-2.1.1/qdap/man/deprecated.Rd | 2
qdap-2.1.1/qdap/man/dir_map.Rd | 2
qdap-2.1.1/qdap/man/discourse_map.Rd | 14
qdap-2.1.1/qdap/man/dispersion_plot.Rd | 36
qdap-2.1.1/qdap/man/dist_tab.Rd | 2
qdap-2.1.1/qdap/man/diversity.Rd | 5
qdap-2.1.1/qdap/man/duplicates.Rd | 2
qdap-2.1.1/qdap/man/end_inc.Rd | 2
qdap-2.1.1/qdap/man/end_mark.Rd | 57
qdap-2.1.1/qdap/man/env.syl.Rd | 2
qdap-2.1.1/qdap/man/exclude.Rd | 27
qdap-2.1.1/qdap/man/formality.Rd | 24
qdap-2.1.1/qdap/man/freq_terms.Rd | 2
qdap-2.1.1/qdap/man/gantt.Rd | 4
qdap-2.1.1/qdap/man/gantt_plot.Rd | 4
qdap-2.1.1/qdap/man/gantt_rep.Rd | 2
qdap-2.1.1/qdap/man/gantt_wrap.Rd | 2
qdap-2.1.1/qdap/man/gradient_cloud.Rd | 2
qdap-2.1.1/qdap/man/hamlet.Rd | 2
qdap-2.1.1/qdap/man/igraph_params.Rd | 4
qdap-2.1.1/qdap/man/imperative.Rd | 2
qdap-2.1.1/qdap/man/incomplete_replace.Rd | 4
qdap-2.1.1/qdap/man/is.global.Rd | 6
qdap-2.1.1/qdap/man/justification.Rd | 2
qdap-2.1.1/qdap/man/key_merge.Rd | 2
qdap-2.1.1/qdap/man/kullback_leibler.Rd | 2
qdap-2.1.1/qdap/man/mraja1.Rd | 2
qdap-2.1.1/qdap/man/mraja1spl.Rd | 2
qdap-2.1.1/qdap/man/multicsv.Rd | 2
qdap-2.1.1/qdap/man/multigsub.Rd | 4
qdap-2.1.1/qdap/man/multiscale.Rd | 2
qdap-2.1.1/qdap/man/name2sex.Rd | 10
qdap-2.1.1/qdap/man/new_project.Rd | 2
qdap-2.1.1/qdap/man/ngrams.Rd | 2
qdap-2.1.1/qdap/man/object_pronoun_type.Rd |only
qdap-2.1.1/qdap/man/outlier_detect.Rd | 2
qdap-2.1.1/qdap/man/outlier_labeler.Rd | 2
qdap-2.1.1/qdap/man/paste2.Rd | 2
qdap-2.1.1/qdap/man/phrase_net.Rd | 36
qdap-2.1.1/qdap/man/plot.Network.Rd | 2
qdap-2.1.1/qdap/man/plot.SMOG.Rd | 2
qdap-2.1.1/qdap/man/plot.animated_discourse_map.Rd | 6
qdap-2.1.1/qdap/man/plot.animated_formality.Rd | 2
qdap-2.1.1/qdap/man/plot.animated_polarity.Rd | 2
qdap-2.1.1/qdap/man/plot.automated_readability_index.Rd | 2
qdap-2.1.1/qdap/man/plot.character_table.Rd | 2
qdap-2.1.1/qdap/man/plot.cm_distance.Rd | 2
qdap-2.1.1/qdap/man/plot.cmspans.Rd | 2
qdap-2.1.1/qdap/man/plot.coleman_liau.Rd | 2
qdap-2.1.1/qdap/man/plot.combo_syllable_sum.Rd |only
qdap-2.1.1/qdap/man/plot.cumulative_animated_formality.Rd |only
qdap-2.1.1/qdap/man/plot.cumulative_animated_polarity.Rd |only
qdap-2.1.1/qdap/man/plot.cumulative_combo_syllable_sum.Rd |only
qdap-2.1.1/qdap/man/plot.cumulative_end_mark.Rd |only
qdap-2.1.1/qdap/man/plot.cumulative_formality.Rd |only
qdap-2.1.1/qdap/man/plot.cumulative_polarity.Rd |only
qdap-2.1.1/qdap/man/plot.cumulative_syllable_freq.Rd |only
qdap-2.1.1/qdap/man/plot.discourse_map.Rd | 2
qdap-2.1.1/qdap/man/plot.diversity.Rd | 2
qdap-2.1.1/qdap/man/plot.end_mark.Rd |only
qdap-2.1.1/qdap/man/plot.end_mark_by.Rd | 2
qdap-2.1.1/qdap/man/plot.end_mark_by_count.Rd | 2
qdap-2.1.1/qdap/man/plot.end_mark_by_preprocessed.Rd | 2
qdap-2.1.1/qdap/man/plot.end_mark_by_proportion.Rd | 2
qdap-2.1.1/qdap/man/plot.end_mark_by_score.Rd | 2
qdap-2.1.1/qdap/man/plot.flesch_kincaid.Rd | 2
qdap-2.1.1/qdap/man/plot.formality.Rd | 6
qdap-2.1.1/qdap/man/plot.formality_scores.Rd | 2
qdap-2.1.1/qdap/man/plot.freq_terms.Rd | 2
qdap-2.1.1/qdap/man/plot.gantt.Rd | 2
qdap-2.1.1/qdap/man/plot.kullback_leibler.Rd | 2
qdap-2.1.1/qdap/man/plot.linsear_write.Rd | 2
qdap-2.1.1/qdap/man/plot.linsear_write_count.Rd | 2
qdap-2.1.1/qdap/man/plot.linsear_write_scores.Rd | 2
qdap-2.1.1/qdap/man/plot.object_pronoun_type.Rd |only
qdap-2.1.1/qdap/man/plot.polarity.Rd | 2
qdap-2.1.1/qdap/man/plot.polarity_count.Rd | 2
qdap-2.1.1/qdap/man/plot.polarity_score.Rd | 2
qdap-2.1.1/qdap/man/plot.pos.Rd | 2
qdap-2.1.1/qdap/man/plot.pos_by.Rd | 2
qdap-2.1.1/qdap/man/plot.pos_preprocessed.Rd | 2
qdap-2.1.1/qdap/man/plot.pronoun_type.Rd |only
qdap-2.1.1/qdap/man/plot.question_type.Rd | 2
qdap-2.1.1/qdap/man/plot.question_type_preprocessed.Rd | 2
qdap-2.1.1/qdap/man/plot.readability_count.Rd | 2
qdap-2.1.1/qdap/man/plot.readability_score.Rd | 2
qdap-2.1.1/qdap/man/plot.rmgantt.Rd | 2
qdap-2.1.1/qdap/man/plot.sent_split.Rd | 2
qdap-2.1.1/qdap/man/plot.subject_pronoun_type.Rd |only
qdap-2.1.1/qdap/man/plot.sum_cmspans.Rd | 2
qdap-2.1.1/qdap/man/plot.sums_gantt.Rd | 2
qdap-2.1.1/qdap/man/plot.syllable_freq.Rd |only
qdap-2.1.1/qdap/man/plot.table_count.Rd | 2
qdap-2.1.1/qdap/man/plot.table_proportion.Rd | 2
qdap-2.1.1/qdap/man/plot.table_score.Rd | 2
qdap-2.1.1/qdap/man/plot.termco.Rd | 2
qdap-2.1.1/qdap/man/plot.weighted_wfm.Rd | 2
qdap-2.1.1/qdap/man/plot.wfdf.Rd | 2
qdap-2.1.1/qdap/man/plot.wfm.Rd | 2
qdap-2.1.1/qdap/man/plot.word_cor.Rd | 2
qdap-2.1.1/qdap/man/plot.word_proximity.Rd | 2
qdap-2.1.1/qdap/man/plot.word_stats.Rd | 2
qdap-2.1.1/qdap/man/plot.word_stats_counts.Rd | 2
qdap-2.1.1/qdap/man/polarity.Rd | 222 ++
qdap-2.1.1/qdap/man/pos.Rd | 2
qdap-2.1.1/qdap/man/potential_NA.Rd | 2
qdap-2.1.1/qdap/man/power.Rd | 2
qdap-2.1.1/qdap/man/preprocessed.Rd | 2
qdap-2.1.1/qdap/man/preprocessed.check_spelling_interactive.Rd |only
qdap-2.1.1/qdap/man/preprocessed.end_mark_by.Rd | 2
qdap-2.1.1/qdap/man/preprocessed.formality.Rd | 2
qdap-2.1.1/qdap/man/preprocessed.object_pronoun_type.Rd |only
qdap-2.1.1/qdap/man/preprocessed.pos.Rd | 2
qdap-2.1.1/qdap/man/preprocessed.pos_by.Rd | 2
qdap-2.1.1/qdap/man/preprocessed.pronoun_type.Rd |only
qdap-2.1.1/qdap/man/preprocessed.question_type.Rd | 2
qdap-2.1.1/qdap/man/preprocessed.subject_pronoun_type.Rd |only
qdap-2.1.1/qdap/man/pres_debate_raw2012.Rd | 2
qdap-2.1.1/qdap/man/pres_debates2012.Rd | 2
qdap-2.1.1/qdap/man/print.Dissimilarity.Rd | 2
qdap-2.1.1/qdap/man/print.Network.Rd | 6
qdap-2.1.1/qdap/man/print.SMOG.Rd | 2
qdap-2.1.1/qdap/man/print.adjacency_matrix.Rd | 2
qdap-2.1.1/qdap/man/print.all_words.Rd | 2
qdap-2.1.1/qdap/man/print.animated_discourse_map.Rd | 6
qdap-2.1.1/qdap/man/print.animated_formality.Rd | 2
qdap-2.1.1/qdap/man/print.animated_polarity.Rd | 2
qdap-2.1.1/qdap/man/print.automated_readability_index.Rd | 2
qdap-2.1.1/qdap/man/print.boolean_qdap.Rd | 2
qdap-2.1.1/qdap/man/print.character_table.Rd | 2
qdap-2.1.1/qdap/man/print.check_spelling.Rd |only
qdap-2.1.1/qdap/man/print.check_spelling_interactive.Rd |only
qdap-2.1.1/qdap/man/print.check_text.Rd |only
qdap-2.1.1/qdap/man/print.cm_distance.Rd | 2
qdap-2.1.1/qdap/man/print.coleman_liau.Rd | 2
qdap-2.1.1/qdap/man/print.colsplit2df.Rd | 2
qdap-2.1.1/qdap/man/print.combo_syllable_sum.Rd |only
qdap-2.1.1/qdap/man/print.cumulative_animated_formality.Rd |only
qdap-2.1.1/qdap/man/print.cumulative_animated_polarity.Rd |only
qdap-2.1.1/qdap/man/print.cumulative_combo_syllable_sum.Rd |only
qdap-2.1.1/qdap/man/print.cumulative_end_mark.Rd |only
qdap-2.1.1/qdap/man/print.cumulative_formality.Rd |only
qdap-2.1.1/qdap/man/print.cumulative_polarity.Rd |only
qdap-2.1.1/qdap/man/print.cumulative_syllable_freq.Rd |only
qdap-2.1.1/qdap/man/print.discourse_map.Rd | 2
qdap-2.1.1/qdap/man/print.diversity.Rd | 2
qdap-2.1.1/qdap/man/print.end_mark.Rd |only
qdap-2.1.1/qdap/man/print.end_mark_by.Rd | 6
qdap-2.1.1/qdap/man/print.end_mark_by_preprocessed.Rd | 2
qdap-2.1.1/qdap/man/print.flesch_kincaid.Rd | 2
qdap-2.1.1/qdap/man/print.formality.Rd | 2
qdap-2.1.1/qdap/man/print.formality_scores.Rd | 2
qdap-2.1.1/qdap/man/print.fry.Rd | 2
qdap-2.1.1/qdap/man/print.kullback_leibler.Rd | 2
qdap-2.1.1/qdap/man/print.linsear_write.Rd | 2
qdap-2.1.1/qdap/man/print.linsear_write_count.Rd | 2
qdap-2.1.1/qdap/man/print.linsear_write_scores.Rd | 2
qdap-2.1.1/qdap/man/print.ngrams.Rd | 2
qdap-2.1.1/qdap/man/print.object_pronoun_type.Rd |only
qdap-2.1.1/qdap/man/print.phrase_net.Rd | 2
qdap-2.1.1/qdap/man/print.polarity.Rd | 2
qdap-2.1.1/qdap/man/print.polarity_count.Rd | 2
qdap-2.1.1/qdap/man/print.polarity_score.Rd | 2
qdap-2.1.1/qdap/man/print.polysyllable_sum.Rd |only
qdap-2.1.1/qdap/man/print.pos.Rd | 2
qdap-2.1.1/qdap/man/print.pos_by.Rd | 2
qdap-2.1.1/qdap/man/print.pos_preprocessed.Rd | 2
qdap-2.1.1/qdap/man/print.pronoun_type.Rd |only
qdap-2.1.1/qdap/man/print.qdapProj.Rd | 2
qdap-2.1.1/qdap/man/print.qdap_context.Rd | 2
qdap-2.1.1/qdap/man/print.question_type.Rd | 2
qdap-2.1.1/qdap/man/print.question_type_preprocessed.Rd | 2
qdap-2.1.1/qdap/man/print.readability_count.Rd | 2
qdap-2.1.1/qdap/man/print.readability_score.Rd | 2
qdap-2.1.1/qdap/man/print.sent_split.Rd | 2
qdap-2.1.1/qdap/man/print.sub_holder.Rd | 2
qdap-2.1.1/qdap/man/print.subject_pronoun_type.Rd |only
qdap-2.1.1/qdap/man/print.sum_cmspans.Rd | 2
qdap-2.1.1/qdap/man/print.sums_gantt.Rd | 2
qdap-2.1.1/qdap/man/print.syllable_sum.Rd |only
qdap-2.1.1/qdap/man/print.table_count.Rd | 2
qdap-2.1.1/qdap/man/print.table_proportion.Rd | 2
qdap-2.1.1/qdap/man/print.table_score.Rd | 2
qdap-2.1.1/qdap/man/print.termco.Rd | 2
qdap-2.1.1/qdap/man/print.trunc.Rd | 2
qdap-2.1.1/qdap/man/print.wfm.Rd | 2
qdap-2.1.1/qdap/man/print.wfm_summary.Rd | 2
qdap-2.1.1/qdap/man/print.which_misspelled.Rd |only
qdap-2.1.1/qdap/man/print.word_associate.Rd | 2
qdap-2.1.1/qdap/man/print.word_cor.Rd | 2
qdap-2.1.1/qdap/man/print.word_list.Rd | 2
qdap-2.1.1/qdap/man/print.word_proximity.Rd | 2
qdap-2.1.1/qdap/man/print.word_stats.Rd | 2
qdap-2.1.1/qdap/man/print.word_stats_counts.Rd | 2
qdap-2.1.1/qdap/man/pronoun_type.Rd |only
qdap-2.1.1/qdap/man/prop.Rd | 2
qdap-2.1.1/qdap/man/proportions.Rd | 2
qdap-2.1.1/qdap/man/proportions.character_table.Rd | 2
qdap-2.1.1/qdap/man/proportions.end_mark_by.Rd | 2
qdap-2.1.1/qdap/man/proportions.formality.Rd | 2
qdap-2.1.1/qdap/man/proportions.object_pronoun_type.Rd |only
qdap-2.1.1/qdap/man/proportions.pos.Rd | 2
qdap-2.1.1/qdap/man/proportions.pos_by.Rd | 2
qdap-2.1.1/qdap/man/proportions.pronoun_type.Rd |only
qdap-2.1.1/qdap/man/proportions.question_type.Rd | 2
qdap-2.1.1/qdap/man/proportions.subject_pronoun_type.Rd |only
qdap-2.1.1/qdap/man/proportions.termco.Rd | 2
qdap-2.1.1/qdap/man/qcombine.Rd | 2
qdap-2.1.1/qdap/man/qcv.Rd | 2
qdap-2.1.1/qdap/man/qdap.Rd | 2
qdap-2.1.1/qdap/man/qdap_df.Rd |only
qdap-2.1.1/qdap/man/qheat.Rd | 2
qdap-2.1.1/qdap/man/qprep.Rd | 2
qdap-2.1.1/qdap/man/qtheme.Rd | 2
qdap-2.1.1/qdap/man/question_type.Rd | 2
qdap-2.1.1/qdap/man/raj.Rd | 2
qdap-2.1.1/qdap/man/raj.act.1.Rd | 2
qdap-2.1.1/qdap/man/raj.act.1POS.Rd | 2
qdap-2.1.1/qdap/man/raj.act.2.Rd | 2
qdap-2.1.1/qdap/man/raj.act.3.Rd | 2
qdap-2.1.1/qdap/man/raj.act.4.Rd | 2
qdap-2.1.1/qdap/man/raj.act.5.Rd | 2
qdap-2.1.1/qdap/man/raj.demographics.Rd | 2
qdap-2.1.1/qdap/man/rajPOS.Rd | 2
qdap-2.1.1/qdap/man/rajSPLIT.Rd | 2
qdap-2.1.1/qdap/man/random_data.Rd |only
qdap-2.1.1/qdap/man/rank_freq_plot.Rd | 2
qdap-2.1.1/qdap/man/raw.time.span.Rd | 2
qdap-2.1.1/qdap/man/read.transcript.Rd | 4
qdap-2.1.1/qdap/man/replace_abbreviation.Rd | 2
qdap-2.1.1/qdap/man/replace_contraction.Rd | 2
qdap-2.1.1/qdap/man/replace_number.Rd | 12
qdap-2.1.1/qdap/man/replace_ordinal.Rd |only
qdap-2.1.1/qdap/man/replace_symbol.Rd | 2
qdap-2.1.1/qdap/man/replacer.Rd | 2
qdap-2.1.1/qdap/man/rm_row.Rd | 2
qdap-2.1.1/qdap/man/rm_stopwords.Rd | 2
qdap-2.1.1/qdap/man/rm_url.Rd | 2
qdap-2.1.1/qdap/man/sample.time.span.Rd | 2
qdap-2.1.1/qdap/man/scores.Rd | 2
qdap-2.1.1/qdap/man/scores.SMOG.Rd | 2
qdap-2.1.1/qdap/man/scores.automated_readability_index.Rd | 2
qdap-2.1.1/qdap/man/scores.character_table.Rd | 2
qdap-2.1.1/qdap/man/scores.coleman_liau.Rd | 2
qdap-2.1.1/qdap/man/scores.end_mark_by.Rd | 2
qdap-2.1.1/qdap/man/scores.flesch_kincaid.Rd | 2
qdap-2.1.1/qdap/man/scores.formality.Rd | 2
qdap-2.1.1/qdap/man/scores.fry.Rd | 2
qdap-2.1.1/qdap/man/scores.linsear_write.Rd | 2
qdap-2.1.1/qdap/man/scores.object_pronoun_type.Rd |only
qdap-2.1.1/qdap/man/scores.polarity.Rd | 2
qdap-2.1.1/qdap/man/scores.pos_by.Rd | 2
qdap-2.1.1/qdap/man/scores.pronoun_type.Rd |only
qdap-2.1.1/qdap/man/scores.question_type.Rd | 2
qdap-2.1.1/qdap/man/scores.subject_pronoun_type.Rd |only
qdap-2.1.1/qdap/man/scores.termco.Rd | 2
qdap-2.1.1/qdap/man/scores.word_stats.Rd | 2
qdap-2.1.1/qdap/man/scrubber.Rd | 2
qdap-2.1.1/qdap/man/sentSplit.Rd | 13
qdap-2.1.1/qdap/man/space_fill.Rd | 2
qdap-2.1.1/qdap/man/spaste.Rd | 2
qdap-2.1.1/qdap/man/speakerSplit.Rd | 2
qdap-2.1.1/qdap/man/stemmer.Rd | 2
qdap-2.1.1/qdap/man/strWrap.Rd | 2
qdap-2.1.1/qdap/man/strip.Rd | 2
qdap-2.1.1/qdap/man/subject_pronoun_type.Rd |only
qdap-2.1.1/qdap/man/summary.cmspans.Rd | 2
qdap-2.1.1/qdap/man/summary.wfdf.Rd | 2
qdap-2.1.1/qdap/man/summary.wfm.Rd | 2
qdap-2.1.1/qdap/man/syllabication.Rd | 18
qdap-2.1.1/qdap/man/synonyms.Rd | 8
qdap-2.1.1/qdap/man/t.DocumentTermMatrix.Rd | 2
qdap-2.1.1/qdap/man/t.TermDocumentMatrix.Rd | 2
qdap-2.1.1/qdap/man/termco.Rd | 2
qdap-2.1.1/qdap/man/termco_c.Rd | 2
qdap-2.1.1/qdap/man/tot_plot.Rd | 2
qdap-2.1.1/qdap/man/trans_cloud.Rd | 2
qdap-2.1.1/qdap/man/trans_context.Rd | 2
qdap-2.1.1/qdap/man/trans_venn.Rd | 2
qdap-2.1.1/qdap/man/unique_by.Rd | 2
qdap-2.1.1/qdap/man/visual.Rd | 2
qdap-2.1.1/qdap/man/visual.discourse_map.Rd | 2
qdap-2.1.1/qdap/man/weight.Rd |only
qdap-2.1.1/qdap/man/word_associate.Rd | 2
qdap-2.1.1/qdap/man/word_cor.Rd | 2
qdap-2.1.1/qdap/man/word_count.Rd | 2
qdap-2.1.1/qdap/man/word_diff_list.Rd | 2
qdap-2.1.1/qdap/man/word_list.Rd | 2
qdap-2.1.1/qdap/man/word_network_plot.Rd | 2
qdap-2.1.1/qdap/man/word_proximity.Rd | 18
qdap-2.1.1/qdap/man/word_stats.Rd | 2
qdap-2.1.1/qdap/tests/testthat/test-as.tdm.R |only
qdap-2.1.1/qdap/tests/testthat/test-automated_readability_index.R | 12
qdap-2.1.1/qdap/tests/testthat/test-bag_o_words.R | 7
qdap-2.1.1/qdap/tests/testthat/test-cm_2long.R |only
qdap-2.1.1/qdap/tests/testthat/test-cm_code.blank.R |only
qdap-2.1.1/qdap/tests/testthat/test-cmspans.R |only
qdap-2.1.1/qdap/tests/testthat/test-colSplit.R |only
qdap-2.1.1/qdap/tests/testthat/test-colcomb2class.R |only
qdap-2.1.1/qdap/tests/testthat/test-dispersion_plot.R |only
qdap-2.1.1/qdap/tests/testthat/test-end_mark.R |only
qdap-2.1.1/qdap/tests/testthat/test-phrase_net.R |only
qdap-2.1.1/qdap/tests/testthat/test-syllable_sum.R |only
qdap-2.1.1/qdap/tests/testthat/test-wfm.R |only
qdap-2.1.1/qdap/vignettes/cleaning_and_debugging.Rnw |only
qdap-2.1.1/qdap/vignettes/qdap.bib | 2
qdap-2.1.1/qdap/vignettes/tm_package_compatibility.Rnw | 42
477 files changed, 3810 insertions(+), 1131 deletions(-)
Title: Utilities for Official Spanish Microdata
Diff between MicroDatosEs versions 0.6.2.1 dated 2014-06-25 and 0.6.3 dated 2014-08-02
Description: The MicroDatosEs package provides utilities for reading and processing microdata from Spanish official statistics with R
Author: Carlos J. Gil Bellosta [aut, cre],
Carlos Neira [ctb],
José Luis Cañadas Reche [ctb]
Maintainer: Carlos J. Gil Bellosta
DESCRIPTION | 8
MD5 | 20 -
R/defun2011.R | 6
R/ees2010.R | 6
R/epa2005.R | 6
R/read.fwf.microdata.R | 6
R/test.metadata.R | 2
inst/metadata/epa_mdat1.txt | 138 ++++-----
inst/metadata/epa_mdat1.txt.latin1 |only
inst/metadata/epa_mdat2.txt | 524 ++++++++++++++++++-------------------
inst/metadata/epa_mdat2.txt.latin1 |only
man/test.metadata.Rd | 2
12 files changed, 360 insertions(+), 358 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-11 3.9-12
Title: Specialized, high-performance pipeline operators
Diff between pipeR versions 0.3-2 dated 2014-07-26 and 0.3-3 dated 2014-08-02
Description: Provides specialized, high-performance operators
for chaining commands with three forward-piping
operations: first-argument piping, free piping,
and lambda piping, making command chaining clear,
fast, readable and flexible.
Author: Kun Ren
Maintainer: Kun Ren
DESCRIPTION | 8 ++--
MD5 | 14 +++----
NEWS | 5 ++
R/functions.R | 10 ++---
R/pipeR.R | 4 +-
README.md | 81 ++++++++++++++++++++++++++++---------------
man/first-argument-piping.Rd | 4 +-
man/lambda-piping.Rd | 4 +-
8 files changed, 81 insertions(+), 49 deletions(-)
More information about CerioliOutlierDetection at CRAN
Permanent link