Mon, 04 Aug 2014

Package Xmisc updated to version 0.1.0 with previous version 0.0.10 dated 2014-06-16

Title: Xiaobei's miscellaneous classes and functions
Description: This is Xiaobei's miscellaneous classes and functions useful when developing R packages, particularly for OOP using R Reference Class.
Author: Xiaobei Zhao [aut, cre, cph]
Maintainer: Xiaobei Zhao

Diff between Xmisc versions 0.0.10 dated 2014-06-16 and 0.1.0 dated 2014-08-04

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Package PowerVenn (with last version 0.0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-08-02 0.0.1

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Package rfigshare updated to version 0.3.6 with previous version 0.3.5 dated 2014-07-18

Title: an R interface to figshare.com.
Description: an R interface to figshare.com.
Author: Carl Boettiger [aut, cre], Scott Chamberlain [aut], Karthik Ram [aut], Edmund Hart [aut]
Maintainer: Carl Boettiger

Diff between rfigshare versions 0.3.5 dated 2014-07-18 and 0.3.6 dated 2014-08-04

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Package MXM updated to version 0.2.1 with previous version 0.2 dated 2014-08-01

Title: Discovering multiple, statistically-equivalent signatures
Description: Feature selection methods for identifying minimal, statistically-equivalent and equally-predictive feature subsets. MXM stands for "Mens eX Machina", meaning "Mind from the Machine" in Latin.
Author: Ioannis Tsamardinos, Vincenzo Lagani, Giorgos Borboudakis, Giorgos Athineou
Maintainer: Giorgos Athineou

Diff between MXM versions 0.2 dated 2014-08-01 and 0.2.1 dated 2014-08-04

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Package hitandrun updated to version 0.4-2 with previous version 0.4-1 dated 2014-01-14

Title: "Hit and Run" method for sampling uniformly from convex shapes.
Description: This package provides an implementation of the "Hit and Run" method for sampling uniformly from convex shapes. It further provides specialized implementation for sampling normalized weights with arbitrary linear constraints.
Author: Gert van Valkenhoef, Tommi Tervonen
Maintainer: Gert van Valkenhoef

Diff between hitandrun versions 0.4-1 dated 2014-01-14 and 0.4-2 dated 2014-08-04

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Package dendroextras updated to version 0.2.1 with previous version 0.2 dated 2014-06-08

Title: Extra functions to cut, label and colour dendrogram clusters
Description: This package provides extra functions to manipulate dendrograms that build on the base functions provided by the stats package. The main functionality it is designed to add is the ability to colour all the edges in an object of class dendrogram according to cluster membership i.e. each subtree is coloured, not just the terminal leaves. In addition it provides some utility functions to cut dendrogram and hclust objects and to set/get labels.
Author: Gregory Jefferis
Maintainer: Gregory Jefferis

Diff between dendroextras versions 0.2 dated 2014-06-08 and 0.2.1 dated 2014-08-04

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Package afex updated to version 0.10-113 with previous version 0.9-109 dated 2014-04-24

Title: Analysis of Factorial Experiments
Description: Provides convenience functions for analyzing factorial experiments using ANOVA or mixed-models. ez.glm() and aov.car() allow convenient calculation of between, within (i.e., repeated-measures), or mixed between-within (i.e., split-plot) ANOVAs for data in the long format (i.e., one observation per row) wrapping car::Anova() (aggregating more then one observation per individual and cell of the design), per default returning a print ready ANOVA table. Function mixed() fits a mixed model using lme4::lmer() and computes p-values for all effects in the model using either the Kenward-Roger approximation of degrees of freedom (LMM only), parametric bootstrap (LMMs and GLMMs) or likelihood ratio tests (LMMs and GLMMs). afex uses type 3 sums of squares as default (imitating commercial statistical software). Furthermore, compare.2.vectors() conveniently compares two vectors using a variety of tests.
Author: Henrik Singmann [aut, cre], Ben Bolker [ctb], Søren Højsgaard [ctb], John Fox [ctb], Michael A. Lawrence [ctb], Ulf Mertens [ctb]
Maintainer: Henrik Singmann

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Package fAssets updated to version 3003.81-1 with previous version 3003.81 dated 2014-03-26

Title: Rmetrics - Analysing and Modelling Financial Assets
Description: Environment for teaching "Financial Engineering and Computational Finance"
Author: Rmetrics Core Team
Maintainer: Tobias Setz

Diff between fAssets versions 3003.81 dated 2014-03-26 and 3003.81-1 dated 2014-08-04

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Package sn updated to version 1.1-0 with previous version 1.0-0 dated 2014-01-07

Title: The skew-normal and skew-t distributions
Description: Define and manipulate probability distributions of the skew-normal family and some related ones (notably the skew-t family) and provide related statistical methods for data fitting and diagnostics, in the univariate and the multivariate case.
Author: Adelchi Azzalini
Maintainer: Adelchi Azzalini

Diff between sn versions 1.0-0 dated 2014-01-07 and 1.1-0 dated 2014-08-04

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Package phonTools updated to version 0.2-2.0 with previous version 0.2-1.2 dated 2014-05-11

Title: Functions for phonetics in R.
Description: The functions contained in this package are intended to facilitate the organization, display, and analysis of the sorts of data frequently encountered in phonetics research and experimentation, including the easy creation of IPA vowel plots. Some functions also allow for the creation and manipulation of sounds saved as WAV files.
Author: Santiago Barreda
Maintainer: Santiago Barreda

Diff between phonTools versions 0.2-1.2 dated 2014-05-11 and 0.2-2.0 dated 2014-08-04

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New package W3CMarkupValidator with initial version 0.1-0
Package: W3CMarkupValidator
Version: 0.1-0
Title: R Interface to W3C Markup Validation Services
Authors@R: person("Kurt", "Hornik", role = c("aut", "cre"), email = "Kurt.Hornik@R-project.org")
Description: R interface to a W3C Markup Validation service. See for more information.
Imports: XML, RCurl
License: GPL-2
Packaged: 2014-08-04 15:59:07 UTC; hornik
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-04 18:02:16

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New package npsm with initial version 0.01
Package: npsm
Type: Package
Title: Package for Nonparametric Statistical Methods using R
Version: 0.01
Date: 2014-08-04
Author: John Kloke, Joseph McKean
Maintainer: John Kloke
Description: Functions and datasets used in the book Nonparametric Statistical Methods using R.
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
Depends: Rfit
Suggests: boot
Packaged: 2014-08-04 15:00:05 UTC; john
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-04 18:07:31

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New package EIAdata with initial version 0.0.1
Package: EIAdata
Type: Package
Title: R Wrapper for the Energy Information Administration (EIA) API
Version: 0.0.1
Date: 2014-08-04
Author: Matthew Brigida
Maintainer: Matthew Brigida
Description: An R wrapper to allow the user to query categories and Series IDs, and import data, from the EIA's API.
Depends: R (>= 2.11.0), XML, plyr, xts, zoo
License: GPL-2
Packaged: 2014-08-04 14:48:11 UTC; matt
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-04 18:07:30

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Package symmoments updated to version 1.2 with previous version 1.1 dated 2014-02-23

Title: Symbolic central and noncentral moments of the multivariate normal distribution
Description: Symbolic central and non-central moments of the multivariate normal distribution. Computes a standard representation, LateX code, and values at specified mean and covariance matrices.
Author: Kem Phillips
Maintainer: Kem Phillips

Diff between symmoments versions 1.1 dated 2014-02-23 and 1.2 dated 2014-08-04

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Package pomp updated to version 0.53-5 with previous version 0.53-1 dated 2014-06-30

Title: Statistical inference for partially observed Markov processes
Description: Inference methods for partially-observed Markov processes
Author: Aaron A. King [aut, cre], Edward L. Ionides [aut], Carles Breto [aut], Stephen P. Ellner [ctb], Matthew J. Ferrari [ctb], Bruce E. Kendall [ctb], Michael Lavine [ctb], Dao Nguyen [ctb], Daniel C. Reuman [ctb], Helen Wearing [ctb], Simon N. Wood [ctb]
Maintainer: Aaron A. King

Diff between pomp versions 0.53-1 dated 2014-06-30 and 0.53-5 dated 2014-08-04

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New package rPref with initial version 0.1
Package: rPref
Version: 0.1
Date: 2014-08-01
Title: Preferences and Skyline Computation in R
Author: Patrick Roocks
Maintainer: Patrick Roocks
Description: Implementing Preferences in R to retrieve Maxima for a given strict partial order. This also includes the Skyline Operator, which allows to retrieve the pareto-optimal values.
URL: http://www.p-roocks.de/rpref
Depends: R (>= 3.0.0), methods
Imports: Rcpp, dplyr, igraph
License: GPL (>= 2)
LazyData: true
LinkingTo: Rcpp
Suggests: testthat
Packaged: 2014-08-04 14:17:24 UTC; Patrick Roocks
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-08-04 16:48:39

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Package nloptr updated to version 1.0.4 with previous version 1.0.0 dated 2014-02-16

Title: R interface to NLopt
Description: nloptr is an R interface to NLopt. NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms. See http://ab-initio.mit.edu/wiki/index.php/NLopt_Introduction for more information on the available algorithms. During installation on Unix the NLopt code is downloaded and compiled from the NLopt website.
Author: Jelmer Ypma , with contributions by Hans W. Borchers and Dirk Eddelbuettel
Maintainer: Jelmer Ypma

Diff between nloptr versions 1.0.0 dated 2014-02-16 and 1.0.4 dated 2014-08-04

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Package geostatsp updated to version 0.9.999 with previous version 0.9.9 dated 2014-07-10

Title: Geostatistics using SpatialPoints and rasters
Description: This package provides to geostatistical modelling facilities using raster and SpatialPoints objects.
Author: Patrick Brown [aut, cre], Robert Hijmans [ctb]
Maintainer: Patrick Brown

Diff between geostatsp versions 0.9.9 dated 2014-07-10 and 0.9.999 dated 2014-08-04

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Package decctools updated to version 0.2.0 with previous version 0.1.6 dated 2014-05-07

Title: Get energy data from the UK Dept of Energy and Climate Change
Description: decctools provides functions for retrieving energy statistics from the United Kingdom Department of Energy and Climate Change and related data sources. The current version focuses on total final energy consumption statistics at the local authority, MSOA, and LSOA geographies. Methods for calculating the generation mix of grid electricity and its associated carbon intensity are also provided.
Author: James Keirstead
Maintainer: James Keirstead

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Package tsintermittent updated to version 1.3 with previous version 1.2 dated 2014-07-16

Title: Intermittent Time Series Forecasting
Description: This package contains functions for analysing and forecasting intermittent demand/slow moving items time series.
Author: Nikolaos Kourentzes and Fotios Petropoulos
Maintainer: Nikolaos Kourentzes

Diff between tsintermittent versions 1.2 dated 2014-07-16 and 1.3 dated 2014-08-04

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New package BHMSMAfMRI with initial version 1.0
Package: BHMSMAfMRI
Type: Package
Title: Bayesian hierarchical multi-subject multiscale analysis of functional MRI data.
Version: 1.0
Date: 2014-05-21
Authors@R: c(person("Nilotpal", "Sanyal", role = c("aut", "cre"), email = "nsanyal_v@isical.ac.in"), person("Marco A.R.", "Ferreira", role = "aut"))
VignetteBuilder: knitr
Depends: fmri, AnalyzeFMRI, wavethresh
Suggests: knitr
Description: Performs BHMSMA of fMRI data (Sanyal & Ferreira, 2012) using wavelet based prior that borrows strength across subjects and returns posterior smoothed versions of the fMRI data and samples from the posterior distribution.
Repository: CRAN
License: GPL (>= 2)
Packaged: 2014-08-04 10:17:50 UTC; Sunny
Author: Nilotpal Sanyal [aut, cre], Marco A.R. Ferreira [aut]
Maintainer: Nilotpal Sanyal
NeedsCompilation: no
Date/Publication: 2014-08-04 14:19:39

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Package modelcf (with last version 2.1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-06-08 2.1.1
2011-02-03 2.1
2010-09-30 2.0

Permanent link
Package squash updated to version 1.0.6 with previous version 1.0.1 dated 2011-08-15

Title: Color-based plots for multivariate visualization
Description: This package provides functions for color-based visualization of multivariate data, i.e. colorgrams or heatmaps. Lower-level functions are provided to map numeric values to colors, display a matrix as an array of colors, and draw color keys. Higher-level plotting functions are provided to generate a bivariate histogram, a dendrogram aligned with a color-coded matrix, a triangular distance matrix, and more.
Author: Aron Eklund
Maintainer: Aron Eklund

Diff between squash versions 1.0.1 dated 2011-08-15 and 1.0.6 dated 2014-08-04

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Package RandomFields updated to version 3.0.32 with previous version 3.0.30 dated 2014-07-25

Title: Simulation and Analysis of Random Fields
Description: Simulation of Gaussian and extreme value random fields; conditional simulation; kriging; maximum likelihood estimation
Author: Martin Schlather [aut, cre], Alexander Malinowski [aut], Marco Oesting [aut], Daphne Boecker [aut], Kirstin Strokorb [aut], Sebastian Engelke [aut], Johannes Martini [aut], Felix Ballani [aut], Peter Menck [aut], Sebastian Gross [aut], Ulrike Ober [ctb], Katharina Burmeister [ctb], Juliane Manitz [ctb], Paulo Ribeiro [ctb], Richard Singleton [ctb], Ben Pfaff [ctb], R Core Team [ctb]
Maintainer: Martin Schlather

Diff between RandomFields versions 3.0.30 dated 2014-07-25 and 3.0.32 dated 2014-08-04

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Package kohonen updated to version 2.0.15 with previous version 2.0.14 dated 2013-12-12

Title: Supervised and unsupervised self-organising maps
Description: Supervised and unsupervised self-organising maps
Author: Ron Wehrens
Maintainer: Ron Wehrens

Diff between kohonen versions 2.0.14 dated 2013-12-12 and 2.0.15 dated 2014-08-04

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Package ChemometricsWithR updated to version 0.1.8 with previous version 0.1.7 dated 2012-10-12

Title: Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences
Description: The package provides functions and scripts used in the book "Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences" by Ron Wehrens, Springer (2011).
Author: Ron Wehrens
Maintainer: Ron Wehrens

Diff between ChemometricsWithR versions 0.1.7 dated 2012-10-12 and 0.1.8 dated 2014-08-04

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New package mwaved with initial version 1.0
Package: mwaved
Type: Package
Title: Multichannel wavelet deconvolution with additive long memory noise
Version: 1.0
Date: 2014-08-04
Author: Justin Rory Wishart
Maintainer: Justin Rory Wishart
Description: Computes the Wavelet deconvolution estimate of a common signal present in multiple channels that have possible different levels of blur and long memory additive error.
License: GPL
LinkingTo: Rcpp
Imports: Rcpp (>= 0.11.1), shiny
SystemRequirements: fftw3 (>= 3.3.4)
NeedsCompilation: Yes
Suggests: fracdiff, ggplot2, gridExtra
URL: https://github.com/jrwishart/mwaved
BugReports: https://github.com/jrwishart/mwaved/issues
Packaged: 2014-08-04 00:55:03 UTC; justinw
Repository: CRAN
Date/Publication: 2014-08-04 08:15:19

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New package MixedTS with initial version 1.0.1
Package: MixedTS
Type: Package
Title: Mixed Tempered Stable Distribution
Version: 1.0.1
Date: 2014-28-11
Depends: methods, stats4, MASS
Author: Lorenzo Mercuri, Edit Rroji
Maintainer: Lorenzo Mercuri
Description: This package provides detailed functions for univariate Mixed Tempered Stable distribution distribution with Gamma density. This distribution encompasses, Variance Gamma and Symmetric Geo-Stable as special cases. The package contains routine for mle estimation, for the computation of density, probability, quantile and random numbers
License: GPL (>= 2)
Repository: CRAN
Repository/R-Forge/Project: mixedts
Repository/R-Forge/Revision: 11
Repository/R-Forge/DateTimeStamp: 2014-08-03 17:55:34
Date/Publication: 2014-08-04 08:15:17
Packaged: 2014-08-03 18:15:19 UTC; rforge
NeedsCompilation: no

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Package fmsb updated to version 0.5.0 with previous version 0.4.5 dated 2014-06-14

Title: Functions for medical statistics book with some demographic data
Description: Several utility functions for the book entitled "Practices of Medical and Health Data Analysis using R" (Pearson Education Japan, 2007) with Japanese demographic data and some demographic analysis related functions.
Author: Minato Nakazawa
Maintainer: Minato Nakazawa

Diff between fmsb versions 0.4.5 dated 2014-06-14 and 0.5.0 dated 2014-08-04

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New package breakaway with initial version 1.0
Package: breakaway
Type: Package
Title: Species richness estimation and modelling
Version: 1.0
Date: 2014-08-03
Author: Amy Willis and John Bunge
Maintainer: Amy Willis
Description: breakaway estimates and models total (observed plus unobserved) species richness. It is applicable to any situation where an unknown number of classes is to be estimated, but is especially suited to the microbial context. Microbial diversity datasets are characterized by a large number of rare species and a small number of highly abundant species. The class of models implemented by breakaway is flexible enough to model both these features. In the event that the practitioner does not believe or trust their singleton count, the procedure breakaway_nof1 estimates diversity in a way that does not require a singleton count. betta_basic runs a regression-type analysis of estimated total diversity, thus permitting accounting for unobserved taxa while also incorporating available covariate information. betta_basic does not enforce use of breakaway for diversity estimation.
License: GPL-2
Packaged: 2014-08-04 00:19:43 UTC; amywillis
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-04 08:15:18

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Package BH updated to version 1.54.0-3 with previous version 1.54.0-2 dated 2014-04-14

Title: Boost C++ header files
Description: Boost provides free peer-reviewed portable C++ source libraries. A large part of Boost is provided as C++ template code which is resolved entirely at compile-time without linking. This package aims to provide the most useful subset of Boost libraries for template use among CRAN package. By placing these libraries in this package, we offer a more efficient distribution system for CRAN as replication of this code in the sources of other packages is avoided.
Author: Dirk Eddelbuettel, John W. Emerson and Michael J. Kane
Maintainer: Dirk Eddelbuettel

Diff between BH versions 1.54.0-2 dated 2014-04-14 and 1.54.0-3 dated 2014-08-04

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 inst/include/boost/parameter.hpp               |only
 inst/include/boost/parameter/aux_/cast.hpp     |only
 inst/include/boost/parameter/aux_/preprocessor |only
 inst/include/boost/parameter/macros.hpp        |only
 inst/include/boost/parameter/match.hpp         |only
 inst/include/boost/parameter/preprocessor.hpp  |only
 man/BH-package.Rd                              |    4 +--
 12 files changed, 58 insertions(+), 11 deletions(-)

More information about BH at CRAN
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