Title: Xiaobei's miscellaneous classes and functions
Diff between Xmisc versions 0.1.0 dated 2014-08-04 and 0.2.1 dated 2014-08-12
Description: This is Xiaobei's miscellaneous classes and functions useful when
developing R packages, particularly for OOP using R Reference Class.
Author: Xiaobei Zhao [aut, cre, cph]
Maintainer: Xiaobei Zhao
Xmisc-0.1.0/Xmisc/man/get.loglevel.Rd |only
Xmisc-0.2.1/Xmisc/.Rinstignore | 5
Xmisc-0.2.1/Xmisc/DESCRIPTION | 15 +
Xmisc-0.2.1/Xmisc/MD5 | 59 +++++--
Xmisc-0.2.1/Xmisc/NEWS | 27 +++
Xmisc-0.2.1/Xmisc/R/argumentparser.R | 107 ++++++++-----
Xmisc-0.2.1/Xmisc/R/imports.R |only
Xmisc-0.2.1/Xmisc/R/internal.R | 7
Xmisc-0.2.1/Xmisc/R/list.R | 6
Xmisc-0.2.1/Xmisc/R/unittest.R |only
Xmisc-0.2.1/Xmisc/R/util.R | 201 +++++++++++++++++++++++---
Xmisc-0.2.1/Xmisc/R/valueparser.R | 8 -
Xmisc-0.2.1/Xmisc/R/xrefclass.R | 26 +--
Xmisc-0.2.1/Xmisc/build |only
Xmisc-0.2.1/Xmisc/inst/CITATION | 19 +-
Xmisc-0.2.1/Xmisc/inst/bin |only
Xmisc-0.2.1/Xmisc/inst/doc |only
Xmisc-0.2.1/Xmisc/inst/tests |only
Xmisc-0.2.1/Xmisc/man/ArgumentParser-class.Rd | 4
Xmisc-0.2.1/Xmisc/man/UnitTest-class.Rd |only
Xmisc-0.2.1/Xmisc/man/ValueParser-class.Rd | 4
Xmisc-0.2.1/Xmisc/man/as.loglevel.Rd | 2
Xmisc-0.2.1/Xmisc/man/cat0.Rd |only
Xmisc-0.2.1/Xmisc/man/dfchunk.Rd | 9 -
Xmisc-0.2.1/Xmisc/man/func.Rd |only
Xmisc-0.2.1/Xmisc/man/get_executable.Rd |only
Xmisc-0.2.1/Xmisc/man/get_extdata.Rd |only
Xmisc-0.2.1/Xmisc/man/get_loglevel.Rd |only
Xmisc-0.2.1/Xmisc/man/is.connection.Rd |only
Xmisc-0.2.1/Xmisc/man/is.loglevel.Rd | 2
Xmisc-0.2.1/Xmisc/man/logme.Rd | 2
Xmisc-0.2.1/Xmisc/man/schunk.Rd | 9 +
Xmisc-0.2.1/Xmisc/man/srep.Rd |only
Xmisc-0.2.1/Xmisc/man/vchunk.Rd | 15 +
Xmisc-0.2.1/Xmisc/man/xRefClass-class.Rd | 2
Xmisc-0.2.1/Xmisc/vignettes |only
36 files changed, 391 insertions(+), 138 deletions(-)
Title: ergm.graphlets: A Package for ERG Modeling Based on Graphlet
Properties
Diff between ergm.graphlets versions 1.0.1 dated 2013-10-24 and 1.0.2 dated 2014-08-12
More information about ergm.graphlets at CRAN
Description: A package integrating graphlet statistics based model terms
for use in "ergm" models as part of the "statnet" suite of packages.
Author: Omer Nebil Yaveroglu [aut, cre],
Sean M. Fitzhugh [aut],
Maciej Kurant [aut],
Athina Markopoulou [aut],
Natasa Przulj [aut],
Carter T. Butts [aut]
Maintainer: Omer Nebil Yaveroglu
ergm.graphlets-1.0.1/ergm.graphlets/tests/serineProteaseInhibitor.txt |only
ergm.graphlets-1.0.2/ergm.graphlets/DESCRIPTION | 10 +-
ergm.graphlets-1.0.2/ergm.graphlets/MD5 | 15 ++-
ergm.graphlets-1.0.2/ergm.graphlets/NAMESPACE | 2
ergm.graphlets-1.0.2/ergm.graphlets/data |only
ergm.graphlets-1.0.2/ergm.graphlets/inst/CITATION | 2
ergm.graphlets-1.0.2/ergm.graphlets/man/emon3.Rd |only
ergm.graphlets-1.0.2/ergm.graphlets/man/ergm.graphlets-package.Rd | 39 ----------
ergm.graphlets-1.0.2/ergm.graphlets/man/spi.Rd |only
ergm.graphlets-1.0.2/ergm.graphlets/tests/example.R | 23 +----
10 files changed, 21 insertions(+), 70 deletions(-)
Permanent link
Title: Diverse basic statistical and graphical functions
Diff between RVAideMemoire versions 0.9-37 dated 2014-08-09 and 0.9-38 dated 2014-08-12
Description: This package contains diverse more or less complicated functions, written to simplify user's life: simplifications of existing functions, basic but not implemented tests, easy-to-use tools, bridges between functions of different packages... All functions are presented in the French book 'Aide-memoire de statistique appliquee a la biologie', written by the same author and available on CRAN.
Author: Maxime Hervé
Maintainer: Maxime Hervé
DESCRIPTION | 10 +++++-----
MD5 | 26 +++++++++++++-------------
NAMESPACE | 2 +-
R/DA.confusion.R | 4 ++--
R/DA.valid.R | 13 +++++++------
R/DA.var.R | 4 ++--
R/PLSDA.VIP.R | 4 ++--
R/PLSDA.ncomp.R | 7 ++++---
R/PLSDA.test.R | 13 +++++++------
R/zzz.R | 2 +-
man/DA.valid.Rd | 2 +-
man/PLSDA.ncomp.Rd | 2 +-
man/PLSDA.test.Rd | 2 +-
man/RVAideMemoire-package.Rd | 4 ++--
14 files changed, 49 insertions(+), 46 deletions(-)
Title: Exact (Restricted) Likelihood Ratio tests for mixed and additive
models.
Diff between RLRsim versions 2.1-3 dated 2014-02-04 and 3.0 dated 2014-08-12
Description: Rapid, simulation-based exact (restricted) likelihood ratio tests
for testing the presence of variance components/nonparametric terms for
models fit with nlme::lme(),lme4::lmer(), gamm4::gamm4(), mgcv::gamm() and
SemiPar::spm().
Author: Fabian Scheipl, Ben Bolker
Maintainer: Fabian Scheipl
RLRsim-2.1-3/RLRsim/TODO |only
RLRsim-3.0/RLRsim/DESCRIPTION | 18 +-
RLRsim-3.0/RLRsim/MD5 | 34 ++--
RLRsim-3.0/RLRsim/NAMESPACE | 3
RLRsim-3.0/RLRsim/NEWS |only
RLRsim-3.0/RLRsim/R/LRTSim.R | 225 +++++++++++++--------------
RLRsim-3.0/RLRsim/R/RLRTSim.R | 94 +++++------
RLRsim-3.0/RLRsim/R/RLRsim-package.R | 14 -
RLRsim-3.0/RLRsim/R/RcppExports.R |only
RLRsim-3.0/RLRsim/R/exactLRT.R | 2
RLRsim-3.0/RLRsim/R/exactRLRT.R | 7
RLRsim-3.0/RLRsim/R/extract.lmeDesign.R | 10 -
RLRsim-3.0/RLRsim/R/extract.lmerModDesign.R | 3
RLRsim-3.0/RLRsim/man/LRTSim.Rd | 131 +++++++--------
RLRsim-3.0/RLRsim/man/RLRsim-package.Rd | 18 --
RLRsim-3.0/RLRsim/man/exactLRT.Rd | 125 ++++++---------
RLRsim-3.0/RLRsim/man/exactRLRT.Rd | 160 ++++++++-----------
RLRsim-3.0/RLRsim/man/extract.lmeDesign.Rd | 40 ++--
RLRsim-3.0/RLRsim/src/RLRsim.cpp | 231 ++++++++++++----------------
RLRsim-3.0/RLRsim/src/RcppExports.cpp |only
20 files changed, 531 insertions(+), 584 deletions(-)
Title: A R convenience layer for CouchDB
Diff between R4CouchDB versions 0.4 dated 2014-01-01 and 0.6 dated 2014-08-12
Description: The R4CouchDB package provides a collection of functions for basic
database and document management operations such as add and delete. Every
cdbFunction() gets and returns a list() containing the connection setup.
Such a list (in the documentation mostly called cdb) can be generated by
cdb <- cdbIni(). Then, the list cdb provides some functions respectively
functionality e.g cdb$baseUrl() or cdb$getDocRev().
Author: Thomas Bock
Maintainer: Thomas Bock
DESCRIPTION | 28 +++++++---------
MD5 | 60 +++++++++++++++++------------------
NAMESPACE | 26 ++++++++++-----
R/cdbAddAttachment.R | 28 ++++++++++------
R/cdbAddDoc.R | 11 +++---
R/cdbDeleteDoc.R | 6 +--
R/cdbGetConfig.R | 13 ++++---
R/cdbGetDoc.R | 7 ++--
R/cdbGetList.R | 3 +
R/cdbGetUuid.R | 42 +++++++++++++-----------
R/cdbGetUuidS.R | 62 +++++++++++++++---------------------
R/cdbGetView.R | 4 +-
R/cdbIni.R | 77 +++++++++++++++++++++++++++++++++++----------
R/cdbListDB.R | 8 ++--
R/cdbMakeDB.R | 6 +--
R/cdbRemoveDB.R | 9 +++--
R/cdbUpdateDoc.R | 12 +++----
man/cdbAddAttachment.Rd | 27 +++++++++------
man/cdbAddDoc.Rd | 33 ++++++++-----------
man/cdbDeleteDoc.Rd | 25 +++++++-------
man/cdbGetConfig.Rd | 24 ++++++--------
man/cdbGetDoc.Rd | 31 ++++++++----------
man/cdbGetList.Rd | 37 +++++++++------------
man/cdbGetUuid.Rd | 26 +++++++--------
man/cdbGetUuidS.Rd | 43 +++++++++++--------------
man/cdbGetView.Rd | 39 ++++++++++------------
man/cdbIni.Rd | 82 +++++++++++++++++++++++++++---------------------
man/cdbListDB.Rd | 28 +++++++---------
man/cdbMakeDB.Rd | 34 ++++++++-----------
man/cdbRemoveDB.Rd | 28 +++++++---------
man/cdbUpdateDoc.Rd | 54 ++++++++++++++-----------------
31 files changed, 479 insertions(+), 434 deletions(-)
Title: Tools for analyzing QTL experiments
Diff between qtl versions 1.32-10 dated 2014-05-29 and 1.33-7 dated 2014-08-12
Description: Analysis of experimental crosses to identify genes
(called quantitative trait loci, QTLs) contributing to variation in
quantitative traits.
Author: Karl W Broman
Maintainer: Karl W Broman
DESCRIPTION | 17 +++++----
MD5 | 62 +++++++++++++++++----------------
R/mqmaugment.R | 36 ++++++++-----------
R/qtlcart_io.R | 28 +++++++-------
R/read.cross.R | 70 +++++++++++++++++++++++++++----------
R/read.cross.csv.R | 69 ++++++++++++------------------------
R/read.cross.csvs.R | 77 ++++++++++++++---------------------------
R/read.cross.gary.R | 14 +++----
R/read.cross.mq.R |only
R/readMWril.R | 47 +++++--------------------
R/write.cross.R | 8 ++--
R/write.cross.mq.R |only
build/vignette.rds |binary
data/badorder.RData |binary
data/bristle3.RData |binary
data/bristleX.RData |binary
data/fake.4way.RData |binary
data/fake.bc.RData |binary
data/fake.f2.RData |binary
data/hyper.RData |binary
data/listeria.RData |binary
data/locations.RData |binary
data/map10.RData |binary
data/mapthis.RData |binary
data/multitrait.RData |binary
inst/INSTALL_ME.txt | 16 ++++----
inst/STATUS.txt | 23 ++++++++++++
inst/doc/rqtltour.pdf |binary
man/read.cross.Rd | 31 ++++++++++++----
man/write.cross.Rd | 7 ++-
src/mqmaugment.cpp | 77 ++++++++++++++++-------------------------
src/mqmscan.cpp | 46 ++++++++++++++++--------
tests/test_mapqtl_io.R |only
tests/test_mapqtl_io.Rout.save |only
34 files changed, 320 insertions(+), 308 deletions(-)
Title: Simulation and Analysis of Random Fields
Diff between RandomFields versions 3.0.34 dated 2014-08-11 and 3.0.35 dated 2014-08-12
Description: Simulation of Gaussian and extreme value random fields;
conditional simulation; kriging; maximum likelihood estimation
Author: Martin Schlather [aut, cre], Alexander Malinowski [aut], Marco Oesting [aut], Daphne Boecker [aut], Kirstin Strokorb [aut], Sebastian Engelke [aut], Johannes Martini [aut], Felix Ballani [aut], Peter Menck [aut], Sebastian Gross [aut], Ulrike Ober [ctb], Katharina Burmeister [ctb], Juliane Manitz [ctb], Paulo Ribeiro [ctb], Richard Singleton [ctb], Ben Pfaff [ctb], R Core Team [ctb]
Maintainer: Martin Schlather
DESCRIPTION | 6 +-
MD5 | 62 +++++++++++++++---------------
R/Methods-RFestimation.R | 86 +++++++++++++++++++++++++++---------------
R/RFsp-plots.R | 2
R/auxiliary.R | 9 +++-
R/convert.R | 1
R/internal_use.R | 4 -
man/RFinterpolate.Rd | 3 +
man/RMtrend.Rd | 8 +++
man/papers.jss14.Rd | 21 ++++++----
src/Brown.cc | 30 ++++++--------
src/Gneiting.cc | 14 +++---
src/InternalCov.cc | 6 ++
src/MLE.cc | 12 ++---
src/Primitive.cc | 27 +++++++------
src/RF.h | 89 +++++++++++++++++++++++++++-----------------
src/RandomFields.h | 9 +---
src/auxiliary.cc | 16 ++++++-
src/avltr_modified.cc | 95 +++++++++++++++++++++--------------------------
src/avltr_modified.h | 51 ++++++++++++-------------
src/basic.h | 4 -
src/circulant.cc | 4 -
src/extremes.cc | 6 ++
src/gauss.cc | 4 -
src/getNset.cc | 13 +++---
src/hyperplan.cc | 24 +++--------
src/initNerror.cc | 12 ++---
src/operator.cc | 6 +-
src/tbm.cc | 4 -
src/trend.cc | 2
src/userinterfaces.cc | 13 +++---
src/variogramAndCo.cc | 4 -
32 files changed, 358 insertions(+), 289 deletions(-)
Title: Power and Sample size based on two one-sided t-tests (TOST) for
(bio)equivalence studies
Diff between PowerTOST versions 1.1-12 dated 2014-07-02 and 1.1-13 dated 2014-08-12
Description: Contains functions to calculate power and sample size for
various study designs used for bioequivalence studies.
See function known.designs() for study designs covered.
Moreover the package contains functions for power and sample size
based on 'expected' power in case of uncertain (estimated) variability.
-----
Added are functions for the power and sample size for the ratio of
two means with normally distributed data on the original scale
(based on Fieller's confidence ('fiducial') interval).
-----
Contains further functions for power and sample size calculations
based on non-inferiority t-test. This is not a TOST procedure but
eventually useful if the question of 'non-superiority' must be
evaluated.
The power and sample size calculations based on non-inferiority
test may also performed via 'expected' power in case of uncertain
(estimated) variability.
-----
Contains functions power.scABEL() and sampleN.scABEL() to
calculate power and sample size for the BE decision via scaled
(widened) BE acceptance limits based on simulations.
Contains functions power.RSABE() and sampleN.RSABE()
to calculate power and sample size for the BE decision via
reference scaled ABE criterion according to the FDA procedure
based on simulations.
Contains further functions power.NTIDFDA() and sampleN.NTIDFDA()
to calculate power and sample size for the BE decision via
the FDA procedure for NTID's based on simulations.
Author: Detlew Labes [aut, cre],
Helmut Schuetz [ctb]
Maintainer: Detlew Labes
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
NEWS | 5 +++++
R/DesignHelpers.R | 4 ++--
inst/doc/BE_power_sample_size_excerpt_V06.pdf |binary
5 files changed, 15 insertions(+), 10 deletions(-)
Title: Calculation of Low Flow Statistics for daily stream flow data
Diff between lfstat versions 0.6 dated 2014-02-26 and 0.6.1 dated 2014-08-12
Description: The "Manual on Low-flow Estimation and Prediction", published by the World Meteorological Organisation (WMO), gives a comprehensive summary on how to analyse stream flow data focusing on low-flows. This packages provides functions to compute the described statistics and produce plots similar to the ones in the manual.
Author: Daniel Koffler and Gregor Laaha
Maintainer: Gregor Laaha
DESCRIPTION | 14 -
MD5 | 6
R/6streamdef.R | 458 ++++++++++++++++++++++++++---------------------------
data/ngaruroro.rda |binary
4 files changed, 239 insertions(+), 239 deletions(-)
Title: Draws diagrams (mis)representing the results of mass spec
experiments
Diff between msarc versions 1.3.2 dated 2013-08-12 and 1.3.4 dated 2014-08-12
Description: Clusters Uniprot terms by GO category, then draws diagrams
showing the results in hierarchical clusters, with lines for individual
proteins, showing their score with the length of the line. The results
are in general not publication-ready, but will rather require editing
via Illustrator or some similar tool.
Author: Gord Brown, Hisham Mohammed
Maintainer: Gordon Brown
DESCRIPTION | 8 ++++----
MD5 | 13 +++++++------
R/loader.R | 2 +-
R/plotter.R | 4 ++--
build |only
data/control_df.txt.gz |binary
inst/doc/msarc.pdf |binary
vignettes/samplePlot.png |binary
8 files changed, 14 insertions(+), 13 deletions(-)
Title: Shrinkage Covariance Matrix Estimators
Diff between ShrinkCovMat versions 1.0.0 dated 2014-04-17 and 1.0.1 dated 2014-08-12
Description: This package provides nonparametric Steinian shrinkage estimators of the covariance matrix that are suitable in high dimensional settings, that is when the number of variables is larger than the sample size.
Author: Anestis Touloumis
Maintainer: Anestis Touloumis
DESCRIPTION | 10 +++++-----
MD5 | 14 ++++++++------
NEWS |only
inst |only
man/ShrinkCovMat-package.Rd | 5 ++---
man/colon.Rd | 2 +-
man/shrinkcovmat.equal.Rd | 8 ++++----
man/shrinkcovmat.identity.Rd | 4 ++--
man/shrinkcovmat.unequal.Rd | 8 ++++----
9 files changed, 26 insertions(+), 25 deletions(-)
Title: Conditional Akaike information criterion for lme4
Diff between cAIC4 versions 0.1 dated 2014-06-04 and 0.2 dated 2014-08-12
Description: Provides functions for the estimation of the conditional Akaike
information in generalized mixed-effects models fitted with (g)lmer
form lme4.
Author: Benjamin Saefken and David Ruegamer, with contributions from Sonja Greven and Thomas Kneib
Maintainer: Benjamin Saefken
DESCRIPTION | 10 ++---
MD5 | 23 ++++++-----
NAMESPACE | 1
R/bcMer.R | 6 +--
R/biasCorrectionBernoulli.R | 1
R/biasCorrectionGaussian.R | 24 +++++++++---
R/cAIC.R | 18 +++++++--
R/calculateGaussianBc.R | 86 +++++++++++++++++++++++++-------------------
R/deleteZeroComponents.R | 34 ++++++++++++++---
R/getModelComponents.R | 14 +++++--
man/cAIC.Rd | 33 +++++++++++-----
man/cAIC4-package.Rd | 8 +---
man/deleteZeroComponents.Rd |only
13 files changed, 169 insertions(+), 89 deletions(-)
Title: A Parallel Analysis With Polychoric Correlation Matrices
Diff between random.polychor.pa versions 1.1.4 dated 2014-08-05 and 1.1.4-1 dated 2014-08-12
More information about random.polychor.pa at CRAN
Description: The Function performs a parallel analysis using simulated polychoric correlation matrices. The nth-percentile of the eigenvalues distribution obtained from both the randomly generated and the real data polychoric correlation matrices is returned. A plot comparing the two types of eigenvalues (real and simulated) will help determine the number of real eigenvalues that outperform random data. The function is based on the idea that if real data are non-normal and the polychoric correlation matrix is needed to perform a Factor Analysis, then the Parallel Analysis method used to choose a non-random number of factors should also be based on randomly generated polychoric correlation matrices and not on Pearson correlation matrices. Random data sets are simulated assuming or a uniform or a multinomial distribution or via the bootstrap method of resampling (i.e., random permutations of cases). Also Multigroup Parallel analysis is made available for random (uniform and multinomial distribution and with or without difficulty factor) and bootstrap methods. An option to choose between default or full output is also available as well as a parameter to print Fit Statistics (Chi-squared, TLI, RMSEA, RMR and BIC) for the factor solutions indicated by the Parallel Analysis.
Author: Fabio Presaghi & Marta Desimoni
Maintainer: Fabio Presaghi
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/random.polychor.pa.r | 10 +++++-----
man/NEWS.Rd | 7 +++++++
man/random.polychor.pa-package.Rd | 4 ++--
5 files changed, 22 insertions(+), 15 deletions(-)
Permanent link
Title: Two-Stage Threshold Estimation
Diff between twostageTE versions 1.01 dated 2014-07-30 and 1.2 dated 2014-08-12
Description: Implements a variety of nonparametric methods for computing one-stage and two-stage confidence intervals, as well as point estimates of threshold values.
Author: Shawn Mankad, George Michailidis, Moulinath Banerjee
Maintainer: Shawn Mankad
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
R/linearBootstrapConfidenceInterval_stageTwo.R | 10 +++++++---
3 files changed, 13 insertions(+), 9 deletions(-)
Title: Estimate Permutation p-values for Random Forest Importance
Metrics.
Diff between rfPermute versions 1.5.2 dated 2013-11-03 and 1.6.1 dated 2014-08-12
Description: Estimate significance of importance metrics
for a Random Forest model by permuting the response
variable. Produces null distribution of importance
metrics for each predictor variable and p-value of
observed.
Author: Eric Archer
Maintainer: Eric Archer
DESCRIPTION | 19 ++++-------
MD5 | 36 +++++++++++----------
NAMESPACE | 14 +++++---
R/calc.imp.pval.R |only
R/clean.rf.data.R | 32 ++++++++-----------
R/plot.rfPermute.R | 33 +++++++------------
R/plot.rp.importance.r | 18 ++++++----
R/proximity.plot.r | 15 ++++----
R/rfPermute.R | 30 ++++++++---------
R/rfPermute.default.R | 32 ++++---------------
R/rfPermute.formula.R | 15 --------
R/rp.combine.R |only
R/rp.importance.R | 33 +++++++------------
man/calc.imp.pval.Rd |only
man/clean.rf.data.Rd | 22 +++++--------
man/plot.rfPermute.Rd | 29 ++++++++---------
man/plot.rp.importance.Rd | 30 +++++++----------
man/proximity.plot.Rd | 35 ++++++++------------
man/rfPermute.Rd | 77 ++++++++++++++++++++--------------------------
man/rp.combine.Rd |only
man/rp.importance.Rd | 29 +++++++----------
21 files changed, 216 insertions(+), 283 deletions(-)
Title: Procedures for Psychological, Psychometric, and Personality
Research
Diff between psych versions 1.4.8 dated 2014-08-10 and 1.4.8.11 dated 2014-08-12
Description: A number of routines for personality, psychometrics and experimental psychology. Functions are primarily for scale construction using factor analysis, cluster analysis and reliability analysis, although others provide basic descriptive statistics. Item Response Theory is done using factor analysis of tetrachoric and polychoric correlations. Functions for simulating particular item and test structures are included. Several functions serve as a useful front end for structural equation modeling. Graphical displays of path diagrams, factor analysis and structural equation models are created using basic graphics. Some of the functions are written to support a book on psychometrics as well as publications in personality research. For more information, see the personality-project.org/r webpage.
Author: William Revelle
Maintainer: William Revelle
DESCRIPTION | 8 ++++----
MD5 | 14 +++++++-------
R/polychoric.R | 8 ++++++--
inst/CITATION | 4 ++--
inst/NEWS.Rd | 8 ++++----
inst/doc/overview.pdf |binary
inst/doc/psych_for_sem.pdf |binary
man/tetrachor.Rd | 5 +++--
8 files changed, 26 insertions(+), 21 deletions(-)
Title: Multi-model inference
Diff between MuMIn versions 1.10.0 dated 2014-05-13 and 1.10.5 dated 2014-08-12
Description: Model selection and model averaging based on information criteria
(AICc and alike).
Author: Kamil Bartoń
Maintainer: Kamil Bartoń
DESCRIPTION | 13 ++--
MD5 | 88 +++++++++++++++--------------
NAMESPACE | 3 +
NEWS | 29 +++++++++
R/ICOMP.R | 4 -
R/dredge.R | 15 +++--
R/ext.R | 12 +++-
R/formulas.R | 29 ++++++++-
R/get.models.R | 67 ++++++----------------
R/importance.R | 8 +-
R/makeArgs.R | 8 +-
R/model.avg.R | 12 ++--
R/model.sel.R | 1
R/model.selection.R | 7 --
R/pdredge.R | 32 +++++++---
R/quasiLik.R | 6 +-
R/r.squaredGLMM.R | 22 +++----
R/r.squaredLR.R | 2
R/utils-misc.R | 50 +++++++++++++---
R/utils-models.R | 20 ++++--
data/Beetle.rda |binary
data/Cement.rda |binary
demo/dredge.subset.R | 2
demo/gees.R | 5 +
demo/pdredge.pcount.R | 2
inst/TODO | 8 +-
man/MuMIn-package.Rd | 1
man/cement.Rd | 2
man/dredge.Rd | 126 ++++++++++++++++++++++++------------------
man/get.models.Rd | 49 ++++++++++------
man/merge.model.selection.Rd | 8 +-
man/mod.sel.Rd | 8 +-
man/model-utils.Rd | 2
man/model.avg.Rd | 5 +
man/pdredge.Rd | 2
man/r.squaredGLMM.Rd | 41 ++++++++-----
man/r.squaredLR.Rd | 23 ++++---
man/subset.model.selection.Rd | 5 +
man/supported-classes.Rd | 2
man/updateable.Rd | 2
tests/_gam.R |only
tests/_r_squared_glmm.R |only
tests/classes.R | 14 ++--
tests/misc-tests.R | 2
tests/singularities.R | 2
tests/unmarked.R | 27 ++++++++-
46 files changed, 463 insertions(+), 303 deletions(-)
Title: Forecasting functions for time series and linear models
Diff between forecast versions 5.4 dated 2014-05-08 and 5.5 dated 2014-08-12
Description: Methods and tools for displaying and analysing
univariate time series forecasts including exponential smoothing
via state space models and automatic ARIMA modelling.
Author: Rob J Hyndman
Maintainer: Rob J Hyndman
ChangeLog | 16 ++
DESCRIPTION | 9 -
MD5 | 36 +++---
NAMESPACE | 5
R/arima.R | 19 ++-
R/errors.R | 80 +++++++++++---
R/ets.R | 7 +
R/forecast.R | 40 ++++++-
R/msts.R | 4
R/newarima2.R | 70 ++++++++----
R/season.R | 247 +++++++++++++++++++++++++++++++++++----------
R/tbats.R | 29 +++--
README.md | 64 ++++++++++-
inst/tests/test-accurary.R | 5
man/accuracy.Rd | 6 -
man/croston.Rd | 6 -
man/forecast.Rd | 3
man/forecast.stl.Rd | 86 +++++++++------
man/seasonal.dummy.Rd | 19 ++-
19 files changed, 563 insertions(+), 188 deletions(-)