Title: An IPSUR Plugin for the R Commander
Description:
This package is an R Commander plugin that accompanies IPSUR, an Introduction to Probability and Statistics Using R.
Author: G. Jay Kerns [aut, cre],
Theophilus Boye [ctb],
Tyler Drombosky [ctb]
Maintainer: G. Jay Kerns
Diff between RcmdrPlugin.IPSUR versions 0.1-8 dated 2012-03-23 and 0.2-0 dated 2014-08-29
DESCRIPTION | 29 MD5 | 35 NAMESPACE | 4 R/First.r | 43 R/enterTableProportionsTest.r | 620 +-- R/globals.R |only R/graphs-menu.R | 1088 +++--- R/misc.r | 203 - R/multiSamplePropTest.r | 170 R/numSumIPSUR.r | 402 +- R/prob-cont-menu.R | 5814 ++++++++++++++++---------------- R/prob-disc-menu.R | 2828 +++++++-------- R/prob-sample-menu.R | 6954 +++++++++++++++++++-------------------- R/prob-sim-menu.R | 5975 ++++++++++++++++----------------- R/statistics-summaries-menu.R | 356 - R/statistics-tables-menu.R | 630 +-- inst/etc/menus.txt | 490 +- man/RcmdrPlugin.IPSUR-package.Rd | 15 man/numSummaryIPSUR.Rd | 83 19 files changed, 12875 insertions(+), 12864 deletions(-)
More information about RcmdrPlugin.IPSUR at CRAN
Permanent link
Title: Mixed GAM Computation Vehicle with GCV/AIC/REML smoothness
estimation
Description: Routines for GAMs and other generalized ridge regression
with multiple smoothing parameter selection by GCV, REML
or UBRE/AIC. Also GAMMs. Includes a gam() function.
Author: Simon Wood
Maintainer: Simon Wood
Diff between mgcv versions 1.8-2 dated 2014-07-21 and 1.8-3 dated 2014-08-29
ChangeLog | 13 ++++++++++++- DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- R/bam.r | 13 +++++++++---- R/smooth.r | 12 ++++++------ man/bam.Rd | 7 ++++--- man/smoothCon.Rd | 25 +++++++++++++++++++++++++ src/gdi.c | 18 +++++++++++------- src/mat.c | 2 +- 9 files changed, 79 insertions(+), 33 deletions(-)
Title: ExtraTrees method
Description: A package implementing ExtraTrees method for classification and
regression. Uses Java implementation of the method.
Author: Jaak Simm, Ildefons Magrans de Abril
Maintainer: Jaak Simm
Diff between extraTrees versions 1.0.1 dated 2014-08-10 and 1.0.2 dated 2014-08-29
DESCRIPTION | 8 ++++---- MD5 | 22 ++++++++++++---------- NAMESPACE | 2 +- R/extraTrees.default.R | 3 +++ R/predict.extraTrees.R | 3 +++ R/setMemory.R |only inst/CHANGELOG | 5 +++++ inst/doc/extraTrees.pdf |binary inst/java/ExtraTrees.jar |binary inst/tests/testthat/test-classification.r | 2 +- inst/tests/testthat/test-regression.r | 2 +- man/extraTrees.Rd | 21 +++++++++++++++++++++ man/setJavaMemory.Rd |only 13 files changed, 51 insertions(+), 17 deletions(-)
Title: Boost C++ header files
Description: Boost provides free peer-reviewed portable C++ source
libraries. A large part of Boost is provided as C++ template code
which is resolved entirely at compile-time without linking. This
package aims to provide the most useful subset of Boost libraries
for template use among CRAN package. By placing these libraries in
this package, we offer a more efficient distribution system for CRAN
as replication of this code in the sources of other packages is
avoided.
Author: Dirk Eddelbuettel, John W. Emerson and Michael J. Kane
Maintainer: Dirk Eddelbuettel
Diff between BH versions 1.54.0-3 dated 2014-08-04 and 1.54.0-4 dated 2014-08-29
ChangeLog | 7 +++++++ DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- inst/NEWS.Rd | 7 +++++++ inst/include/boost/any.hpp |only man/BH-package.Rd | 4 ++-- 6 files changed, 25 insertions(+), 10 deletions(-)
Title: A Suite of Convergence Acceleration Schemes for EM, MM and other
fixed-point algorithms
Description: Algorithms for accelerating the convergence of slow,
monotone sequences from smooth, contraction mapping such as the
EM and MM algorithms. It can be used to accelerate any smooth,
linearly convergent acceleration scheme. A tutorial style
introduction to this package is available in a vignette on the
CRAN download page or, when the package is loaded in an R
session, with vignette("turboEM").
Author: Jennifer F. Bobb [aut], Ravi Varadhan [aut, cre], Hui Zhao [ctb]
Maintainer: Ravi Varadhan
Diff between turboEM versions 2012.2-1 dated 2012-02-17 and 2014.8-1 dated 2014-08-29
turboEM-2012.2-1/turboEM/LICENSE |only turboEM-2012.2-1/turboEM/inst/doc/.Rhistory |only turboEM-2014.8-1/turboEM/DESCRIPTION | 27 turboEM-2014.8-1/turboEM/MD5 | 27 turboEM-2014.8-1/turboEM/NAMESPACE | 56 - turboEM-2014.8-1/turboEM/NEWS | 15 turboEM-2014.8-1/turboEM/R/turboClassMethods.R | 2 turboEM-2014.8-1/turboEM/R/turboSim.R | 4 turboEM-2014.8-1/turboEM/inst/doc/turboEM.R |only turboEM-2014.8-1/turboEM/inst/doc/turboEM.Rnw | 1035 ++++++++++++------------ turboEM-2014.8-1/turboEM/inst/doc/turboEM.pdf |binary turboEM-2014.8-1/turboEM/man/internal.Rd | 3 turboEM-2014.8-1/turboEM/man/turbo.Rd | 18 turboEM-2014.8-1/turboEM/man/turboSim.Rd | 7 turboEM-2014.8-1/turboEM/man/turboem.Rd | 12 turboEM-2014.8-1/turboEM/man/turbosimMethods.Rd | 15 turboEM-2014.8-1/turboEM/vignettes |only 17 files changed, 626 insertions(+), 595 deletions(-)
Title: MA Birk functions
Description: This is a compilation of functions that I found useful to make. It currently includes a unit of measurement conversion function and a standard error function that behaves complementary to sd().
Author: Matthew A Birk
Maintainer: Matthew A Birk
Diff between birk versions 1.0 dated 2014-06-25 and 1.1 dated 2014-08-29
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ R/conv_unit.R | 46 ++++++++++++++++++++++++++++++++++------------ man/birk-package.Rd | 15 +++++---------- man/conv_unit.Rd | 46 +++++++++++++++++++++++++++++++++++++++------- man/conv_unit_options.Rd | 10 ++++++++-- man/se.Rd | 2 +- 7 files changed, 98 insertions(+), 43 deletions(-)
Title: Multinomial Mixed Effects Models
Description: mme fit Gaussian Multinomial mixed-effects models for small area estimation: Model 1, with one
random effect in each category of the response variable; Model 2, introducing
independent time effect; Model 3, introducing correlated time effect.
mme calculates analytical and parametric bootstrap MSE estimators.
Author: E. Lopez-Vizcaino, M.J. Lombardia and D. Morales
Maintainer: E. Lopez-Vizcaino
Diff between mme versions 0.1-4 dated 2014-01-05 and 0.1-5 dated 2014-08-29
mme-0.1-4/mme/demo/fitmodel1.R |only mme-0.1-4/mme/demo/fitmodel2.R |only mme-0.1-4/mme/demo/fitmodel3.R |only mme-0.1-5/mme/DESCRIPTION | 9 mme-0.1-5/mme/MD5 | 103 ++++----- mme-0.1-5/mme/NAMESPACE | 11 - mme-0.1-5/mme/R/blockdiag.R |only mme-0.1-5/mme/R/mme-package.r | 9 mme-0.1-5/mme/R/modelfit1.R | 10 mme-0.1-5/mme/R/modelfit2.R | 10 mme-0.1-5/mme/R/modelfit3.R | 11 - mme-0.1-5/mme/R/utilities.R | 341 ++++++++++++++----------------- mme-0.1-5/mme/build/vignette.rds |binary mme-0.1-5/mme/demo/fitmodel1.r |only mme-0.1-5/mme/demo/fitmodel2.r |only mme-0.1-5/mme/demo/fitmodel3.r |only mme-0.1-5/mme/inst/CHANGES.txt | 4 mme-0.1-5/mme/inst/doc/mme_vignette.R | 21 - mme-0.1-5/mme/inst/doc/mme_vignette.Rnw | 1 mme-0.1-5/mme/inst/doc/mme_vignette.pdf |binary mme-0.1-5/mme/man/Fbetaf.Rd | 79 +++---- mme-0.1-5/mme/man/Fbetaf.ct.Rd | 86 ++----- mme-0.1-5/mme/man/Fbetaf.it.Rd | 82 ++----- mme-0.1-5/mme/man/addtolist.Rd | 22 -- mme-0.1-5/mme/man/addtomatrix.Rd | 21 - mme-0.1-5/mme/man/ci.Rd | 46 +--- mme-0.1-5/mme/man/data.mme.Rd | 84 ++----- mme-0.1-5/mme/man/initial.values.Rd | 88 ++------ mme-0.1-5/mme/man/mme-package.Rd | 52 ++-- mme-0.1-5/mme/man/mmedata.Rd | 28 -- mme-0.1-5/mme/man/model.Rd | 82 ++----- mme-0.1-5/mme/man/modelfit1.Rd | 100 +++------ mme-0.1-5/mme/man/modelfit2.Rd | 110 +++------- mme-0.1-5/mme/man/modelfit3.Rd | 118 ++++------ mme-0.1-5/mme/man/mseb.Rd | 141 ++++-------- mme-0.1-5/mme/man/msef.Rd | 61 ++--- mme-0.1-5/mme/man/msef.ct.Rd | 68 ++---- mme-0.1-5/mme/man/msef.it.Rd | 70 ++---- mme-0.1-5/mme/man/omega.Rd | 53 +--- mme-0.1-5/mme/man/phi.direct.Rd | 63 ++--- mme-0.1-5/mme/man/phi.direct.ct.Rd | 108 +++------ mme-0.1-5/mme/man/phi.direct.it.Rd | 89 +++----- mme-0.1-5/mme/man/phi.mult.Rd | 49 +--- mme-0.1-5/mme/man/phi.mult.ct.Rd | 69 ++---- mme-0.1-5/mme/man/phi.mult.it.Rd | 67 ++---- mme-0.1-5/mme/man/print.mme.Rd | 17 - mme-0.1-5/mme/man/prmu.Rd | 56 ++--- mme-0.1-5/mme/man/prmu.time.Rd | 71 ++---- mme-0.1-5/mme/man/sPhikf.Rd | 76 ++---- mme-0.1-5/mme/man/sPhikf.ct.Rd | 94 +++----- mme-0.1-5/mme/man/sPhikf.it.Rd | 82 ++----- mme-0.1-5/mme/man/simdata.Rd | 37 +-- mme-0.1-5/mme/man/simdata2.Rd | 39 +-- mme-0.1-5/mme/man/simdata3.Rd | 39 +-- mme-0.1-5/mme/man/wmatrix.Rd | 44 +--- mme-0.1-5/mme/vignettes/mme_vignette.Rnw | 1 56 files changed, 1166 insertions(+), 1756 deletions(-)
Title: Free Sorting data analysis.
Description: The package FreeSortR provides tools for describing and analysing free sorting data. Main methods are computation of consensus partition and factorial analysis of the dissimilarity matrix between stimuli (using multidimensional scaling approach).
Author: Philippe Courcoux
Maintainer: Philippe Courcoux
Diff between FreeSortR versions 1.0 dated 2014-07-22 and 1.1 dated 2014-08-29
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Export Decomposition (Wang-Wei-Zhu and source)
Description: The R package "decompr" implements two export decomposition
algorithms. Firstly, the Wang-Wei-Zhu (Wang, Wei, and Zhu 2013) algorithm
splits bilateral gross exports into 16 value added components. Secondly,
the Source decomposition algorithm derives the value added origin of
exports by country and industry, which is also based on Wang, Wei, and Zhu
(2013).
Author: Bastiaan Quast
Maintainer: Bastiaan Quast
Diff between decompr versions 1.1 dated 2014-08-27 and 1.2 dated 2014-08-29
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS | 10 ++++++++++ R/decomp.R | 12 +++++++----- README.md | 20 +++++++++++++------- inst/CITATION | 4 ++-- man/decomp.Rd | 6 +++--- 7 files changed, 46 insertions(+), 28 deletions(-)
Title: Sankey or ribbon plots
Description: Sankey plots are a type of diagram that is convenient to
illustrate how flow of information, resources etc. separates and joins,
much like observing how rivers split and merge. For example, they can be
used to compare different clusterings.
Author: January Weiner
Maintainer: January Weiner
Diff between riverplot versions 0.2 dated 2014-02-27 and 0.3 dated 2014-08-29
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/riverplot.R | 3 ++- 3 files changed, 8 insertions(+), 7 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-01-02 2.0.2
2014-01-01 2.0.1
2013-12-23 2.0.0
2012-11-30 1.9.2
2012-11-28 1.9.1
2011-12-02 1.8
2011-11-24 1.7
2011-10-19 1.6
2011-09-25 1.5
2011-08-11 1.4
2011-06-28 1.3
2011-06-15 1.2
2011-04-26 1.1.1
2011-03-31 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-13 1.1-36
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-23 1.3.0
2011-12-02 1.2.2
2011-10-19 1.2
2011-04-26 1.1.2
2011-03-31 1.1.0
Title: Computation of Bayes factors for common designs
Description: The BayesFactor package is a suite of functions for computing various Bayes factors for simple designs, including contingency tables, one- and two-sample designs, one-way designs, general ANOVA designs, and linear regression.
Author: Richard D. Morey, Jeffrey N. Rouder, Tahira Jamil
Maintainer: Richard D. Morey
Diff between BayesFactor versions 0.9.7 dated 2014-02-22 and 0.9.8 dated 2014-08-29
DESCRIPTION | 15 - MD5 | 111 ++++---- NAMESPACE | 15 - NEWS | 13 R/BayesFactorPCL-package.R | 4 R/aaClasses.R | 8 R/aaGenerics.R | 3 R/anovaBF.R | 41 ++- R/checking.R | 12 R/common.R | 20 + R/contingency-utility.R |only R/contingency.R |only R/gaussApproxAOV.R | 6 R/generalTest-utility.R | 14 - R/generalTestBF.R | 41 ++- R/linearReg_R2stat.R | 17 + R/meta-ttest-utility.R |only R/meta.ttestBF.R |only R/methods-BFlinearModel-compare.R | 2 R/methods-BFmodel.R | 123 +++++++++ R/methods-BFmodelSample.R | 22 + R/nWayAOV-utility.R | 33 -- R/nWayAOV.R | 28 -- R/oneWayAOV-utility.R | 27 -- R/oneWayAOV_Fstat.R | 5 R/regressionBF-utility.R | 29 -- R/regressionBF.R | 21 + R/ttest-utility.R | 62 ---- R/ttestBF.R | 36 +- R/ttest_tstat.R | 12 build/vignette.rds |binary inst/doc/compare_lme4.R | 20 - inst/doc/compare_lme4.html | 166 ++++++------ inst/doc/index.R | 2 inst/doc/index.html | 12 inst/doc/manual.R | 102 +------ inst/doc/manual.Rmd | 68 ++++- inst/doc/manual.html | 504 +++++++++++++++++++++----------------- inst/doc/priors.R | 10 inst/doc/priors.html | 63 ++-- man/BayesFactor-package.Rd | 4 man/anovaBF.Rd | 6 man/compare-methods.Rd | 3 man/contingencyTableBF.Rd |only man/generalTestBF.Rd | 6 man/grapes-termin-grapes.Rd |only man/meta.ttestBF.Rd |only man/model-classes.Rd | 1 man/nWayAOV.Rd | 6 man/options-BayesFactor.Rd | 3 man/posterior-methods.Rd | 8 man/regressionBF.Rd | 5 man/ttestBF.Rd | 33 +- src/BFPCL.h | 20 - src/linearReg.c | 28 +- src/matrix.c | 5 src/nWayAOV.c | 75 ++++- src/oneWayAOV.c | 23 + src/ttest.c | 26 + vignettes/manual.Rmd | 68 ++++- 60 files changed, 1227 insertions(+), 760 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-02-25 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-02-25 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-07-07 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-16 2013.12
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-02-05 1.0.2
2013-12-08 1.0.1
2013-12-06 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-10-12 1.0.4
2012-08-10 1.0.3
2011-01-15 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-07-07 0.0.5
2012-12-30 0.0.4
2012-05-23 0.0.3
2011-11-03 0.0.2
2011-07-07 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-06-25 0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-09-19 0.9.1
2010-06-25 0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-02-23 2.11-3
2012-07-05 2.11-2
2012-05-30 2.11-1
2012-02-12 2.9-7
2012-01-29 2.9-6
2012-01-27 2.9-5
2012-01-14 2.9-4
2012-01-04 2.9-2
2012-01-03 2.9-1
2011-12-27 2.9
Title: Voxelwise semiparametrics
Description: Parametric and semiparametric inference for massively parallel
models, i.e., a large number of models with common design matrix, as often
occurs with brain imaging data.
Author: Philip Reiss, Yin-Hsiu Chen, Lei Huang, Lan Huo, and Ruixin Tan
Maintainer: Philip Reiss
Diff between vows versions 0.2-1 dated 2013-03-22 and 0.3 dated 2014-08-29
vows-0.2-1/vows/R/get.ind.R |only vows-0.2-1/vows/R/rlr.xz.R |only vows-0.2-1/vows/R/vec2img.R |only vows-0.3/vows/DESCRIPTION | 22 ++-- vows-0.3/vows/MD5 | 118 +++++++++++----------- vows-0.3/vows/NAMESPACE | 52 ++++++--- vows-0.3/vows/R/F.mp.R | 23 ++++ vows-0.3/vows/R/Fdr.rlrt.R | 29 +++++ vows-0.3/vows/R/R2nii.R | 36 ++++-- vows-0.3/vows/R/data.R |only vows-0.3/vows/R/extract.fd.R |only vows-0.3/vows/R/funkmeans.R | 81 +++++++++++++-- vows-0.3/vows/R/funkmeans4d.R | 33 +++++- vows-0.3/vows/R/funkpanel.R | 95 ++++++++++++++---- vows-0.3/vows/R/lm.mp.R | 27 +++++ vows-0.3/vows/R/lm4d.R | 35 ++++++ vows-0.3/vows/R/nii2R.R | 33 +++++- vows-0.3/vows/R/permF.mp.R | 34 ++++++ vows-0.3/vows/R/plot.funkmeans.R | 92 +++++++++++++++-- vows-0.3/vows/R/plot.rlrt4d.R | 130 ++++++++++++++---------- vows-0.3/vows/R/plot.semipar.mp.R | 42 +++++++- vows-0.3/vows/R/qplsc.mp.R | 58 ++++++++++- vows-0.3/vows/R/rlrt.mp.R | 61 +++++++++++ vows-0.3/vows/R/rlrt.mp.fit.R | 53 +++++++++- vows-0.3/vows/R/rlrt4d.R | 26 ++++ vows-0.3/vows/R/rlrtpanel.R | 54 ++++++++-- vows-0.3/vows/R/screen.vox.R | 28 +++++ vows-0.3/vows/R/semipar.mix.mp.R | 60 ++++++++++- vows-0.3/vows/R/semipar.mp.R | 95 +++++++++++++----- vows-0.3/vows/R/semipar4d.R | 28 +++++ vows-0.3/vows/R/sf.r | 26 ++++ vows-0.3/vows/R/summary.lm.mp.R | 28 ++++- vows-0.3/vows/R/vows-internal.R |only vows-0.3/vows/R/vows-mgcv.R | 183 ++++++++++++++++++++++------------- vows-0.3/vows/R/vows_0.3-package.R |only vows-0.3/vows/man/F.mp.Rd | 71 ++++++------- vows-0.3/vows/man/Fdr.rlrt.Rd | 83 ++++++++------- vows-0.3/vows/man/R2nii.Rd | 53 +++++----- vows-0.3/vows/man/extract.fd.Rd |only vows-0.3/vows/man/funkmeans.Rd | 129 ++++++++++++++---------- vows-0.3/vows/man/funkmeans4d.Rd | 74 +++++++------- vows-0.3/vows/man/funkpanel.Rd | 162 +++++++++++++++--------------- vows-0.3/vows/man/lm.mp.Rd | 75 +++++++------- vows-0.3/vows/man/lm4d.Rd | 92 ++++++++--------- vows-0.3/vows/man/nii2R.Rd | 96 +++++++++--------- vows-0.3/vows/man/permF.mp.Rd | 96 ++++++++++-------- vows-0.3/vows/man/plot.funkmeans.Rd | 130 +++++++++++++----------- vows-0.3/vows/man/plot.rlrt4d.Rd | 104 ++++++++----------- vows-0.3/vows/man/plot.semipar.mp.Rd | 114 ++++++++++----------- vows-0.3/vows/man/qplsc.mp.Rd | 147 ++++++++++++++-------------- vows-0.3/vows/man/rlrt.mp.Rd | 150 ++++++++++++++++------------ vows-0.3/vows/man/rlrt.mp.fit.Rd | 125 +++++++++++++---------- vows-0.3/vows/man/rlrt4d.Rd | 80 +++++++-------- vows-0.3/vows/man/rlrtpanel.Rd | 117 ++++++++++++---------- vows-0.3/vows/man/screen.vox.Rd | 85 ++++++++-------- vows-0.3/vows/man/semipar.mix.mp.Rd | 146 +++++++++++++-------------- vows-0.3/vows/man/semipar.mp.Rd | 167 +++++++++++++++++-------------- vows-0.3/vows/man/semipar4d.Rd | 81 +++++++-------- vows-0.3/vows/man/sf.Rd | 84 +++++++--------- vows-0.3/vows/man/summary.lm.mp.Rd | 70 ++++++------- vows-0.3/vows/man/test.Rd | 30 ++--- vows-0.3/vows/man/vows-internal.Rd | 34 +++--- vows-0.3/vows/man/vows-mgcv.Rd | 102 +++++++++++-------- vows-0.3/vows/man/vows-package.Rd | 61 +++++++---- 64 files changed, 2701 insertions(+), 1639 deletions(-)
Title: Obtain and Analyze Rainfall Data from the Climate Prediction
Center
Description: The Climate Prediction Center's (CPC) rainfall data for the
world (1979 to present, 50 km resolution) and the USA (1948 to
present, 25 km resolution), is one of the few high quality, long
term, observation based, daily rainfall products available for free.
Although raw data is available at CPC's ftp site, obtaining,
processing and visualizing the data is not straightforward. There are
more than 12,000 files for the world and about 24,000 files for the USA.
Moreover, file formats and file extensions have not been consistent.
This package provides functionality to download, process and visualize
over 35 years of global rainfall data and over 65 years of USA rainfall
data from CPC.
Author: Gopi Goteti
Maintainer: Gopi Goteti
Diff between raincpc versions 0.3 dated 2014-08-26 and 0.4 dated 2014-08-29
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS | 11 ++++++++--- R/cpc_read_rawdata.r | 30 +++++++++++++++++------------- inst/doc/raincpc_demo.R | 3 +++ inst/doc/raincpc_demo.Rmd | 11 ++++++++++- inst/doc/raincpc_demo.html | 9 ++++++++- man/cpc_read_rawdata.Rd | 9 ++++++--- vignettes/raincpc_demo.Rmd | 11 ++++++++++- 9 files changed, 73 insertions(+), 33 deletions(-)
Title: Estimation of ICA Mixture Models
Description: The icamix package provides R functions as well as a C++ library which facilitate the estimation of ICA mixture models. We have developed and implemented the NSMM-ICA algorithm in the function EMFASTICAALG that currently integrates npEM and Fast-ICA for non-parametric estimation of ICA mixture models.
Author: Xiaotian Zhu, David R. Hunter
Maintainer: Xiaotian Zhu
Diff between icamix versions 1.0 dated 2014-07-02 and 1.0.1 dated 2014-08-29
DESCRIPTION | 8 +-- MD5 | 8 +-- man/icamix-package.Rd | 4 - src/EMInterwovenFastICA.cpp | 100 +++++++++++++++++--------------------------- src/WtsFastICA.cpp | 14 ++++-- 5 files changed, 61 insertions(+), 73 deletions(-)
Title: A improved heatmap package
Description: heatmap3 is an improved heatmap package. It is completely
compatible with the original R function heatmap, and provides some more
powerful and convenient features.
Author: Shilin Zhao, Yan Guo, Quanhu Sheng, Yu Shyr
Maintainer: Shilin Zhao
Diff between heatmap3 versions 1.0.4 dated 2014-06-10 and 1.0.7 dated 2014-08-29
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 9 +++++++++ R/heatmap3.R | 12 +++++++++--- README.md | 7 +++---- man/heatmap3.Rd | 15 +++++++++------ 6 files changed, 39 insertions(+), 22 deletions(-)
Title: Analogue and weighted averaging methods for palaeoecology
Description: Fits Modern Analogue Technique and Weighted Averaging transfer
function models for prediction of environmental data from species
data, and related methods used in palaeoecology.
Author: Gavin L. Simpson [aut, cre],
Jari Oksanen [aut]
Maintainer: Gavin L. Simpson
Diff between analogue versions 0.12-0 dated 2013-12-14 and 0.14-0 dated 2014-08-29
analogue-0.12-0/analogue/R/coefplot.R |only analogue-0.12-0/analogue/R/coefplot.pcr.R |only analogue-0.12-0/analogue/R/randTest.R |only analogue-0.14-0/analogue/DESCRIPTION | 22 analogue-0.14-0/analogue/MD5 | 104 +- analogue-0.14-0/analogue/NAMESPACE | 151 ++-- analogue-0.14-0/analogue/R/analog.R | 1 analogue-0.14-0/analogue/R/analogue-deprecated.R |only analogue-0.14-0/analogue/R/as.data.frame.optima.R | 12 analogue-0.14-0/analogue/R/compare.R |only analogue-0.14-0/analogue/R/crossval.pcr.R | 53 - analogue-0.14-0/analogue/R/evenSample.R |only analogue-0.14-0/analogue/R/fitted.prcurve.R |only analogue-0.14-0/analogue/R/internal.R | 294 ++++---- analogue-0.14-0/analogue/R/n2.R |only analogue-0.14-0/analogue/R/optima.R | 32 analogue-0.14-0/analogue/R/pcr.R | 29 analogue-0.14-0/analogue/R/performance.crossval.R |only analogue-0.14-0/analogue/R/plot.evenSample.R |only analogue-0.14-0/analogue/R/plot.timetrack.R | 30 analogue-0.14-0/analogue/R/plot3d.prcurve.R | 13 analogue-0.14-0/analogue/R/points.timetrack.R |only analogue-0.14-0/analogue/R/prcurve.R | 7 analogue-0.14-0/analogue/R/predict.pcr.R | 4 analogue-0.14-0/analogue/R/predict.prcurve.R |only analogue-0.14-0/analogue/R/predict.timetrack.R |only analogue-0.14-0/analogue/R/roc.R | 2 analogue-0.14-0/analogue/R/timetrack.R | 24 analogue-0.14-0/analogue/R/wa.R | 8 analogue-0.14-0/analogue/README.md |only analogue-0.14-0/analogue/build/vignette.rds |binary analogue-0.14-0/analogue/data/Biome.rda |binary analogue-0.14-0/analogue/data/Climate.rda |binary analogue-0.14-0/analogue/data/Location.rda |binary analogue-0.14-0/analogue/data/Pollen.rda |binary analogue-0.14-0/analogue/inst/ChangeLog | 86 ++ analogue-0.14-0/analogue/inst/NEWS.Rd | 103 ++ analogue-0.14-0/analogue/inst/TODO | 4 analogue-0.14-0/analogue/inst/doc/analogue_methods.R | 34 analogue-0.14-0/analogue/inst/doc/analogue_methods.Rnw | 35 analogue-0.14-0/analogue/inst/doc/analogue_methods.pdf |binary analogue-0.14-0/analogue/man/analogue-package.Rd | 230 ++---- analogue-0.14-0/analogue/man/bayesF.Rd | 3 analogue-0.14-0/analogue/man/compare.Rd |only analogue-0.14-0/analogue/man/crossval.Rd | 26 analogue-0.14-0/analogue/man/densityplot.residLen.Rd | 1 analogue-0.14-0/analogue/man/evenlySampled.Rd |only analogue-0.14-0/analogue/man/histogram.residLen.Rd | 1 analogue-0.14-0/analogue/man/logitreg.Rd | 3 analogue-0.14-0/analogue/man/n2.Rd |only analogue-0.14-0/analogue/man/optima.Rd | 13 analogue-0.14-0/analogue/man/performance.Rd | 25 analogue-0.14-0/analogue/man/plot.evenSample.Rd |only analogue-0.14-0/analogue/man/plot3d.prcurve-deprecated.Rd |only analogue-0.14-0/analogue/man/plot3d.prcurve.Rd | 35 analogue-0.14-0/analogue/man/prcurve.Rd | 8 analogue-0.14-0/analogue/man/predict.pcr.Rd | 2 analogue-0.14-0/analogue/man/predict.prcurve.Rd |only analogue-0.14-0/analogue/man/rankDC.Rd | 5 analogue-0.14-0/analogue/man/roc.Rd | 3 analogue-0.14-0/analogue/man/timetrack.Rd | 74 +- analogue-0.14-0/analogue/tests/Examples/analogue-Ex.Rout.save | 356 ++++++++-- analogue-0.14-0/analogue/vignettes/analogue_methods.Rnw | 35 63 files changed, 1204 insertions(+), 664 deletions(-)