Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-07-12 0.1
Title: R & bitcoin integration
Diff between Rbitcoin versions 0.9 dated 2014-04-18 and 0.9.2 dated 2014-09-01
Description: Utilities related to Bitcoin. Unified markets API interface
(bitstamp, kraken, btce, bitmarket). Both public and private API calls.
Integration of data structures for all markets. Support SSL. Read Rbitcoin
documentation (command: ?btc) for more information.
Author: Jan Gorecki
Maintainer: Jan Gorecki
Rbitcoin-0.9.2/Rbitcoin/DESCRIPTION | 21
Rbitcoin-0.9.2/Rbitcoin/MD5 | 49 -
Rbitcoin-0.9.2/Rbitcoin/NAMESPACE | 35 -
Rbitcoin-0.9.2/Rbitcoin/NEWS | 8
Rbitcoin-0.9.2/Rbitcoin/R/Rbitcoin.R | 137 ++--
Rbitcoin-0.9.2/Rbitcoin/R/zzz.R |only
Rbitcoin-0.9.2/Rbitcoin/README | 4
Rbitcoin-0.9.2/Rbitcoin/README.md |only
Rbitcoin-0.9.2/Rbitcoin/data/api.dict.rda |binary
Rbitcoin-0.9.2/Rbitcoin/man/Rbitcoin.Rd | 163 ++--
Rbitcoin-0.9.2/Rbitcoin/man/Rbitcoin.plot.Rd | 215 ++----
Rbitcoin-0.9.2/Rbitcoin/man/antiddos.Rd | 86 +-
Rbitcoin-0.9.2/Rbitcoin/man/api.dict.Rd | 61 -
Rbitcoin-0.9.2/Rbitcoin/man/available_wallet.Rd | 77 +-
Rbitcoin-0.9.2/Rbitcoin/man/blockchain.api.process.Rd | 76 +-
Rbitcoin-0.9.2/Rbitcoin/man/blockchain.api.query.Rd | 99 +--
Rbitcoin-0.9.2/Rbitcoin/man/get_rate.Rd | 26
Rbitcoin-0.9.2/Rbitcoin/man/market.api.process.Rd | 279 +++-----
Rbitcoin-0.9.2/Rbitcoin/man/market.api.query.Rd | 201 ++----
Rbitcoin-0.9.2/Rbitcoin/man/market.api.query.bitmarket.Rd | 98 +-
Rbitcoin-0.9.2/Rbitcoin/man/market.api.query.bitstamp.Rd | 98 +-
Rbitcoin-0.9.2/Rbitcoin/man/market.api.query.btce.Rd | 97 +-
Rbitcoin-0.9.2/Rbitcoin/man/market.api.query.kraken.Rd | 89 +-
Rbitcoin-0.9.2/Rbitcoin/man/market.api.query.mtgox.Rd | 91 +-
Rbitcoin-0.9.2/Rbitcoin/man/wallet_manager.Rd | 459 +++++---------
Rbitcoin-0.9.2/Rbitcoin/man/wallet_value.Rd | 42 -
Rbitcoin-0.9/Rbitcoin/R/onLoad.R |only
27 files changed, 1089 insertions(+), 1422 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-05-17 0.2
2011-09-07 0.1-7
2011-09-03 0.1-6
2011-03-10 0.1-5
2011-02-12 0.1-4
2009-02-03 0.1-3
2009-01-09 0.1-2
2009-01-03 0.1-1
Title: RCEIM - R Cross Entropy Inspired Method for Optimization
Diff between RCEIM versions 0.1 dated 2013-11-25 and 0.2 dated 2014-09-01
Description: RCEIM is a package implementing a stochastic heuristic method for performing multidimensional function optimization. The method is inspired in the Cross-Entropy Method. It does not relies on derivatives, neither imposes particularly strong requirements into the function to be optimized. Additionally, it takes profit from multicore processing to enable optimization of time-consuming functions.
Author: Alberto Krone-Martins
Maintainer: Alberto Krone-Martins
ChangeLog |only
DESCRIPTION | 10 +++++-----
MD5 | 9 +++++----
R/ceimOpt.R | 18 ++++++++++--------
man/RCEIM-package.Rd | 32 ++++++++++++++------------------
man/ceimOpt.Rd | 22 +++++++++-------------
6 files changed, 43 insertions(+), 48 deletions(-)
Title: Analysis of geostatistical data using Bayes and empirical Bayes
methods
Diff between geoBayes versions 0.1.2 dated 2014-08-20 and 0.1.3 dated 2014-09-01
Description: This package provides functions to fit geostatistical
data. The data can be continuous, binary or count data and the
models implemented are flexible. Conjugate priors are assumed
on some parameters while inference on the other parameters can
be done through a full Bayesian analysis of by empirical Bayes
methods.
Author: Evangelos Evangelou
Maintainer: Evangelos Evangelou
geoBayes-0.1.2/geoBayes/R/robitinv.R |only
geoBayes-0.1.2/geoBayes/man/contour.bfsp.Rd |only
geoBayes-0.1.2/geoBayes/man/robitinv.Rd |only
geoBayes-0.1.3/geoBayes/.Rinstignore | 2
geoBayes-0.1.3/geoBayes/DESCRIPTION | 17
geoBayes-0.1.3/geoBayes/MD5 | 68 +--
geoBayes-0.1.3/geoBayes/NAMESPACE | 5
geoBayes-0.1.3/geoBayes/NEWS | 5
geoBayes-0.1.3/geoBayes/R/bf.R | 73 +++
geoBayes-0.1.3/geoBayes/R/calcbf.R | 442 ++++++++++++++++-------
geoBayes-0.1.3/geoBayes/R/comparebinlinks.R | 2
geoBayes-0.1.3/geoBayes/R/geobayes-package.R | 24 -
geoBayes-0.1.3/geoBayes/R/geoesteb.R | 502 ++++++++++++++++++---------
geoBayes-0.1.3/geoBayes/R/linkfcn.R |only
geoBayes-0.1.3/geoBayes/R/mcsp2.R | 289 ++++++++++++---
geoBayes-0.1.3/geoBayes/R/rhizoctonia-data.R | 2
geoBayes-0.1.3/geoBayes/R/util.R | 80 +++-
geoBayes-0.1.3/geoBayes/demo/00Index | 22 +
geoBayes-0.1.3/geoBayes/demo/rhizoctonia1.R | 6
geoBayes-0.1.3/geoBayes/demo/rhizoctonia2.R |only
geoBayes-0.1.3/geoBayes/demo/rhizoctonia3.R | 14
geoBayes-0.1.3/geoBayes/demo/yield2.R |only
geoBayes-0.1.3/geoBayes/demo/yield3.R |only
geoBayes-0.1.3/geoBayes/demo/yield4.R |only
geoBayes-0.1.3/geoBayes/man/bf1skel.Rd | 58 +++
geoBayes-0.1.3/geoBayes/man/bf2new.Rd | 70 +++
geoBayes-0.1.3/geoBayes/man/bf2optim.Rd | 42 ++
geoBayes-0.1.3/geoBayes/man/ebsglmm.Rd | 131 +++++--
geoBayes-0.1.3/geoBayes/man/ebstrga.Rd | 121 +++++-
geoBayes-0.1.3/geoBayes/man/geoBayes.Rd | 30 +
geoBayes-0.1.3/geoBayes/man/linkfcn.Rd |only
geoBayes-0.1.3/geoBayes/man/mcmcmake.Rd | 57 +++
geoBayes-0.1.3/geoBayes/man/mcsglmm.Rd | 116 +++++-
geoBayes-0.1.3/geoBayes/man/mcstrga.Rd | 94 +++--
geoBayes-0.1.3/geoBayes/man/mkpredgrid2d.Rd | 10
geoBayes-0.1.3/geoBayes/man/plotbf2.Rd |only
geoBayes-0.1.3/geoBayes/man/rhizoctonia.Rd | 2
geoBayes-0.1.3/geoBayes/man/stackdata.Rd | 36 +
geoBayes-0.1.3/geoBayes/src/Makevars | 18
geoBayes-0.1.3/geoBayes/src/bmargin.f90 | 4
geoBayes-0.1.3/geoBayes/src/lbfgsbmod.f90 | 36 +
41 files changed, 1814 insertions(+), 564 deletions(-)
Title: Misc Functions of the Department of Statistics (e1071), TU Wien
Diff between e1071 versions 1.6-3 dated 2014-03-17 and 1.6-4 dated 2014-09-01
Description: Functions for latent class analysis, short time Fourier
transform, fuzzy clustering, support vector machines,
shortest path computation, bagged clustering, naive Bayes
classifier, ...
Author: David Meyer [aut, cre],
Evgenia Dimitriadou [aut, cph],
Kurt Hornik [aut],
Andreas Weingessel [aut],
Friedrich Leisch [aut],
Chih-Chung Chang [ctb, cph] (libsvm C++-code),
Chih-Chen Lin [ctb, cph] (libsvm C++-code)
Maintainer: David Meyer
DESCRIPTION | 8 ++++----
MD5 | 25 +++++++++++++------------
R/naiveBayes.R | 5 +++--
R/sparse.R | 8 +++-----
R/svm.R | 30 ++++++++++++++++--------------
build/vignette.rds |binary
inst/NEWS.Rd | 16 ++++++++++++++++
inst/doc/svmdoc.pdf |binary
inst/doc/svminternals.pdf |binary
man/naiveBayes.Rd | 6 ++++--
man/svm.Rd | 4 +---
src/Rsvm.c | 34 ++++++++++++++++++++++------------
src/svm.cpp | 10 +++++++---
src/svm.cpp.orig |only
14 files changed, 89 insertions(+), 57 deletions(-)
Title: Circular visualization in R
Diff between circlize versions 0.1.0 dated 2014-08-02 and 0.1.1 dated 2014-09-01
Description: circlize implements circular visualization
(http://circos.ca/) in R. Due to the natural born feature of R to draw statistical
graphics, this package can provide a more general and flexible way to
visualize huge information in a circular style.
Author: Zuguang Gu
Maintainer: Zuguang Gu
DESCRIPTION | 8 +-
MD5 | 46 ++++++------
NEWS | 6 +
R/chordDiagram.R | 5 +
R/genomic.R | 43 +++++++-----
inst/doc/circlize.pdf |binary
inst/doc/circular_phylogenetic_tree.R | 11 +--
inst/doc/circular_phylogenetic_tree.Rnw | 13 +--
inst/doc/circular_phylogenetic_tree.pdf |binary
inst/doc/circular_view_of_tables.R | 96 ++++++++++++++-------------
inst/doc/circular_view_of_tables.Rnw | 110 ++++++++++++++++---------------
inst/doc/circular_view_of_tables.pdf |binary
inst/doc/draw_ideogram.R | 22 +++---
inst/doc/draw_ideogram.Rnw | 53 ++++++--------
inst/doc/draw_ideogram.pdf |binary
inst/doc/genomic_plot.pdf |binary
inst/doc/interesting_graphics.R | 10 +-
inst/doc/interesting_graphics.Rnw | 14 +--
inst/doc/interesting_graphics.pdf |binary
vignettes/circular_phylogenetic_tree.Rnw | 13 +--
vignettes/circular_view_of_tables.Rnw | 110 ++++++++++++++++---------------
vignettes/draw_ideogram.Rnw | 53 ++++++--------
vignettes/interesting_graphics.Rnw | 14 +--
vignettes/src/chordDiagram-03-advanced.R | 4 +
24 files changed, 338 insertions(+), 293 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-27 0.3
Title: A suite of functions to flexibly read data from files
Diff between reader versions 1.0.1 dated 2014-03-01 and 1.0.4 dated 2014-09-01
Description: A set of functions to simplify reading data from files. The main function, reader(), should read most common R datafile types without needing any parameters except the filename. Other functions provide simple ways of handling file paths and extensions, and automatically detecting file format and structure.
Author: Nicholas Cooper
Maintainer: Nicholas Cooper
DESCRIPTION | 8 ++--
MD5 | 44 ++++++++++++-------------
NAMESPACE | 2 +
R/reader.R | 16 +++++++--
man/cat.path.Rd | 36 +++++++++------------
man/classify.ext.Rd | 32 ++++++++----------
man/column.salvage.Rd | 29 +++++++---------
man/conv.fixed.width.Rd | 15 ++++----
man/file.ncol.Rd | 38 +++++++++-------------
man/file.nrow.Rd | 24 ++++++--------
man/find.file.Rd | 27 +++++++--------
man/find.id.col.Rd | 36 +++++++++------------
man/force.frame.Rd | 31 ++++++++----------
man/force.vec.Rd | 35 +++++++++-----------
man/get.delim.Rd | 46 ++++++++++++--------------
man/get.ext.Rd | 14 ++++----
man/is.file.Rd | 31 ++++++++----------
man/n.readLines.Rd | 35 +++++++++-----------
man/parse.args.Rd | 37 ++++++++-------------
man/reader-package.Rd | 4 +-
man/reader.Rd | 82 +++++++++++++++++++++---------------------------
man/rmv.ext.Rd | 29 +++++++---------
man/shift.rownames.Rd | 22 +++++-------
23 files changed, 313 insertions(+), 360 deletions(-)
Title: Weighted rank aggregation
Diff between RankAggreg versions 0.4-3 dated 2012-07-01 and 0.5 dated 2014-09-01
Description: This package performs aggregation of ordered lists based
on the ranks using several different algorithms: Borda count,
Cross-Entropy Monte Carlo algorithm, Genetic algorithm, and a
brute force algorithm (for small problems)
Author: Vasyl Pihur
Maintainer: Vasyl Pihur
RankAggreg-0.4-3/RankAggreg/inst/doc/aggr_res.Rdata |only
RankAggreg-0.4-3/RankAggreg/inst/doc/refs.bib |only
RankAggreg-0.5/RankAggreg/DESCRIPTION | 14 ++++++++------
RankAggreg-0.5/RankAggreg/MD5 | 19 +++++++++++--------
RankAggreg-0.5/RankAggreg/NAMESPACE | 2 +-
RankAggreg-0.5/RankAggreg/R/BruteAggreg.R | 7 ++++---
RankAggreg-0.5/RankAggreg/R/RankAggreg.R | 8 ++------
RankAggreg-0.5/RankAggreg/build |only
RankAggreg-0.5/RankAggreg/inst/doc/RankAggreg.R |only
RankAggreg-0.5/RankAggreg/inst/doc/RankAggreg.pdf |binary
RankAggreg-0.5/RankAggreg/man/BruteAggreg.Rd | 3 ++-
RankAggreg-0.5/RankAggreg/vignettes |only
12 files changed, 28 insertions(+), 25 deletions(-)
Title: Miscellaneous general purpose functions
Diff between NCmisc versions 1.1 dated 2014-02-27 and 1.1.2 dated 2014-09-01
Description: A set of handy functions. Includes: versatile one line progress bar, one
line function timer with detailed output, time delay function, text histogram, object
preview, CRAN package search, simpler package installer, Linux command install check,
a flexible Mode function, top function, simulation of correlated data, and more
Author: Nicholas Cooper
Maintainer: Nicholas Cooper
DESCRIPTION | 11
MD5 | 88 +++--
NAMESPACE | 23 +
R/NCmisc.R | 703 +++++++++++++++++++++++++++++++++++++++++---
man/Dim.Rd | 23 -
man/Header.Rd | 28 -
man/Mode.Rd | 31 -
man/NCmisc-internal.Rd | 6
man/NCmisc-package.Rd | 17 -
man/Rfile.index.Rd | 35 +-
man/Substitute.Rd | 33 --
man/Unlist.Rd | 20 -
man/check.linux.install.Rd | 13
man/cor.with.Rd | 38 +-
man/estimate.memory.Rd | 53 ++-
man/exists.not.function.Rd | 34 --
man/extend.pc.Rd |only
man/fakeLines.Rd | 33 --
man/file.split.Rd |only
man/force.percentage.Rd | 26 -
man/force.scalar.Rd | 31 -
man/get.distinct.cols.Rd | 18 -
man/getRepositories.Rd |only
man/headl.Rd | 31 -
man/list.to.env.Rd |only
man/loess.scatter.Rd |only
man/loop.tracker.Rd | 43 +-
man/memory.summary.Rd |only
man/must.use.package.Rd | 40 +-
man/narm.Rd | 26 -
man/out.of.Rd |only
man/packages.loaded.Rd | 51 +--
man/pad.left.Rd | 19 -
man/pctile.Rd | 15
man/preview.Rd | 86 ++---
man/prv.Rd | 64 +---
man/prv.large.Rd | 39 +-
man/rmv.spc.Rd | 21 -
man/search.cran.Rd | 24 -
man/sim.cor.Rd | 54 +--
man/simple.date.Rd |only
man/spc.Rd | 18 -
man/standardize.Rd | 13
man/summarise.r.datasets.Rd | 36 --
man/textogram.Rd | 20 -
man/timeit.Rd | 39 +-
man/toheader.Rd | 15
man/top.Rd | 54 +--
man/wait.Rd | 18 -
49 files changed, 1295 insertions(+), 695 deletions(-)
Title: Simulation and estimation of log-GARCH models
Diff between lgarch versions 0.4 dated 2014-07-01 and 0.5 dated 2014-09-01
Description: Simulation and estimation of univariate and multivariate log-GARCH models. The main functions of the package are: lgarchSim, mlgarchSim, lgarch and mlgarch. The first two functions simulate from a univariate and a multivariate log-GARCH model, respectively, whereas the latter two estimate a univariate and multivariate log-GARCH model, respectively. A collection of methods can be applied to objects of both the 'lgarch' and 'mlgarch' types: coef, fitted, logLik, print, residuals, summary and vcov.
Author: Genaro Sucarrat
Maintainer: Genaro Sucarrat
DESCRIPTION | 10 +++++-----
MD5 | 33 ++++++++++++++++++---------------
NAMESPACE | 2 ++
NEWS |only
R/lgarch-internal.R | 5 +++++
R/lgarch.R | 10 ++++------
R/lgarchRecursion1.R | 11 +++++------
R/lgarchSim.R | 9 ++++-----
R/mlgarch.R | 7 +++----
R/summary.lgarch.R |only
R/summary.mlgarch.R |only
man/coef.lgarch.Rd | 3 +++
man/coef.mlgarch.Rd | 3 +++
man/glag.Rd | 2 +-
man/lgarch-package.Rd | 11 ++++++-----
man/lgarch.Rd | 2 --
man/lgarchSim.Rd | 7 +++----
man/mlgarch.Rd | 4 +---
src/lgarch.cpp | 18 +++++++++++++++++-
19 files changed, 80 insertions(+), 57 deletions(-)
Title: GGIR
Diff between GGIR versions 1.0-4 dated 2014-04-29 and 1.0-6 dated 2014-09-01
Description: GGIR is a tool to process multi-day raw acceleration data
Author: Vincent T van Hees [aut, cre], Zhou Fang [ctb], Jing Hua Zhao [ctb]
Maintainer: Vincent T van Hees
DESCRIPTION | 12
MD5 | 22
NAMESPACE | 4
R/g.analyse.R | 4
R/g.binread.R | 970 ++++++++++++++++++------------------
R/g.getmeta.R | 1372 ++++++++++++++++++++++++++--------------------------
R/g.metric.R | 281 +++++-----
inst/NEWS.Rd | 45 -
man/GGIR-package.Rd | 22
man/g.analyse.Rd | 9
man/g.calibrate.Rd | 8
man/g.getmeta.Rd | 18
12 files changed, 1404 insertions(+), 1363 deletions(-)
Title: Statistical Procedures for Agricultural Research
Diff between agricolae versions 1.2-0 dated 2014-06-30 and 1.2-1 dated 2014-09-01
Description: Agricolae was presented in the thesis "A statistical analysis tool for agricultural research" to obtain the degree of Master on science, mention Systems Engineering, Faculty of Industrial and Systems Engineering, National Engineering University (UNI), Lima-Peru. Original idea, support and data sets came from CIP (International Potato Center). Agricolae offers extensive functionality on experimental design especially for agricultural and plant breeding experiments, which can also be useful for other purposes. It supports planning of lattice, Alpha, Cyclic, Complete Block, Latin Square, Graeco-Latin Squares, augmented block, factorial, split and strip plot designs. There are also various analysis facilities for experimental data, e.g. treatment comparison procedures and several non-parametric tests comparison, biodiversity indexes and consensus cluster.
Author: Felipe de Mendiburu
Maintainer: Felipe de Mendiburu
agricolae-1.2-0/agricolae/R/grid3p.R |only
agricolae-1.2-0/agricolae/R/wxyz.R |only
agricolae-1.2-0/agricolae/man/grid3p.Rd |only
agricolae-1.2-0/agricolae/man/wxyz.Rd |only
agricolae-1.2-1/agricolae/DESCRIPTION | 10
agricolae-1.2-1/agricolae/MD5 | 50 +--
agricolae-1.2-1/agricolae/NAMESPACE | 5
agricolae-1.2-1/agricolae/NEWS | 10
agricolae-1.2-1/agricolae/R/PBIB.test.r | 42 +-
agricolae-1.2-1/agricolae/R/audps.R |only
agricolae-1.2-1/agricolae/R/consensus.R | 9
agricolae-1.2-1/agricolae/R/design.youden.r |only
agricolae-1.2-1/agricolae/R/indexAMMI.r |only
agricolae-1.2-1/agricolae/R/plotAMMI.r | 27 +
agricolae-1.2-1/agricolae/R/zigzag.r | 4
agricolae-1.2-1/agricolae/build/vignette.rds |binary
agricolae-1.2-1/agricolae/inst/doc/tutorial.R | 350 +++++++++++----------
agricolae-1.2-1/agricolae/inst/doc/tutorial.Rnw | 134 +++++---
agricolae-1.2-1/agricolae/inst/doc/tutorial.pdf |binary
agricolae-1.2-1/agricolae/man/AMMI.Rd | 11
agricolae-1.2-1/agricolae/man/AMMI.contour.Rd | 2
agricolae-1.2-1/agricolae/man/PBIB.test.Rd | 17 -
agricolae-1.2-1/agricolae/man/agricolae-package.Rd | 16
agricolae-1.2-1/agricolae/man/audps.Rd |only
agricolae-1.2-1/agricolae/man/consensus.Rd | 15
agricolae-1.2-1/agricolae/man/design.youden.rd |only
agricolae-1.2-1/agricolae/man/hcut.Rd | 11
agricolae-1.2-1/agricolae/man/indexAMMI.Rd |only
agricolae-1.2-1/agricolae/man/order.group.Rd | 2
agricolae-1.2-1/agricolae/man/plotAMMI.Rd | 9
agricolae-1.2-1/agricolae/vignettes/tutorial.Rnw | 134 +++++---
31 files changed, 509 insertions(+), 349 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-18 1.2
2014-07-14 1.1
2014-05-13 1.0
Title: WordNet Interface
Diff between wordnet versions 0.1-9 dated 2013-07-29 and 0.1-10 dated 2014-09-01
Description: An interface to WordNet using the Jawbone Java API to WordNet.
WordNet (
Author: Ingo Feinerer [aut],
Kurt Hornik [aut, cre],
Mike Wallace [ctb, cph] (Jawbone Java WordNet API library)
Maintainer: Kurt Hornik
wordnet-0.1-10/wordnet/DESCRIPTION | 36 ++++++++++++++++++----------
wordnet-0.1-10/wordnet/LICENSE | 34 +-------------------------
wordnet-0.1-10/wordnet/MD5 | 20 ++++++++-------
wordnet-0.1-10/wordnet/build |only
wordnet-0.1-10/wordnet/configure | 2 -
wordnet-0.1-10/wordnet/inst/doc/wordnet.pdf |binary
wordnet-0.1-10/wordnet/java |only
wordnet-0.1-10/wordnet/man/getDict.Rd | 4 +--
wordnet-0.1-10/wordnet/man/initDict.Rd | 4 +--
wordnet-0.1-10/wordnet/man/setDict.Rd | 4 +--
wordnet-0.1-10/wordnet/tools |only
wordnet-0.1-9/wordnet/getsp.class |only
wordnet-0.1-9/wordnet/getsp.java |only
13 files changed, 44 insertions(+), 60 deletions(-)
Title: An interface for creating GUIs modeled in part after traits UI
module for python.
Diff between traitr versions 0.13 dated 2012-01-26 and 0.14 dated 2014-09-01
Description: An interface for creating GUIs modeled in part after the
traits UI module for python. The basic design takes advantage of
the model-view-controller design pattern. The interface makes basic
dialogs quite easy to produce.
Author: John Verzani
Maintainer: John Verzani
traitr-0.13/traitr/TODO.txt |only
traitr-0.13/traitr/inst/doc/basic-gui.png |only
traitr-0.13/traitr/inst/doc/df-scroll.png |only
traitr-0.13/traitr/inst/doc/read-csv-gui.png |only
traitr-0.13/traitr/inst/doc/spotfire.png |only
traitr-0.13/traitr/inst/doc/t-test-1.png |only
traitr-0.13/traitr/inst/doc/t-test-2.png |only
traitr-0.13/traitr/inst/doc/t-test-enabled.png |only
traitr-0.13/traitr/inst/doc/tkdensity-traitr.png |only
traitr-0.13/traitr/inst/doc/uml-dialog.png |only
traitr-0.13/traitr/inst/doc/uml-editor.png |only
traitr-0.13/traitr/inst/doc/uml-itemgroup.png |only
traitr-0.13/traitr/inst/doc/uml-items.png |only
traitr-0.13/traitr/inst/doc/uml-model.png |only
traitr-0.13/traitr/inst/doc/uml-view.png |only
traitr-0.13/traitr/inst/doc/user2010-examples.R |only
traitr-0.13/traitr/inst/doc/why-wait.png |only
traitr-0.13/traitr/man/ButtonEditor.Rd |only
traitr-0.13/traitr/man/DateEditor.Rd |only
traitr-0.13/traitr/man/EntryEditor.Rd |only
traitr-0.13/traitr/man/FileBrowseEditor.Rd |only
traitr-0.13/traitr/man/GraphEditor.Rd |only
traitr-0.13/traitr/man/ImageEditor.Rd |only
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traitr-0.13/traitr/man/ObjectWithValuesEditor.Rd |only
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traitr-0.13/traitr/man/SeparatorEditor.Rd |only
traitr-0.13/traitr/man/TableEditor.Rd |only
traitr-0.13/traitr/man/desc.Rd |only
traitr-0.13/traitr/man/loadingAnimation.Rd |only
traitr-0.13/traitr/man/merge.list.Rd |only
traitr-0.13/traitr/man/param.Rd |only
traitr-0.13/traitr/man/returns.Rd |only
traitr-0.13/traitr/man/ul.Rd |only
traitr-0.13/traitr/man/wrap_in_tag.Rd |only
traitr-0.13/traitr/testing |only
traitr-0.14/traitr/DESCRIPTION | 16 +-
traitr-0.14/traitr/MD5 | 170 ++++++++++-------------
traitr-0.14/traitr/NAMESPACE | 71 +++++----
traitr-0.14/traitr/R/container.R | 5
traitr-0.14/traitr/R/dialog.R | 11 +
traitr-0.14/traitr/R/editor.R | 2
traitr-0.14/traitr/R/helpers.R | 20 +-
traitr-0.14/traitr/R/itemlist.R | 3
traitr-0.14/traitr/build |only
traitr-0.14/traitr/inst/doc/traitr.R |only
traitr-0.14/traitr/inst/doc/traitr.pdf |binary
traitr-0.14/traitr/man/Adapter.Rd | 36 ++++
traitr-0.14/traitr/man/BaseTrait.Rd | 68 ++++++++-
traitr-0.14/traitr/man/BooleanEditor.Rd | 27 +++
traitr-0.14/traitr/man/Container.Rd | 62 +++++++-
traitr-0.14/traitr/man/Controller.Rd | 50 ++++++
traitr-0.14/traitr/man/Dialog.Rd | 70 ++++++++-
traitr-0.14/traitr/man/Editor.Rd | 100 +++++++++++++
traitr-0.14/traitr/man/Item.Rd | 131 +++++++++++++++++
traitr-0.14/traitr/man/ItemGroup.Rd | 109 ++++++++++++++
traitr-0.14/traitr/man/ItemListEditor.Rd | 34 ++++
traitr-0.14/traitr/man/Model.Rd | 39 ++++-
traitr-0.14/traitr/man/View.Rd | 44 +++++
traitr-0.14/traitr/man/aContainer.Rd | 40 +++--
traitr-0.14/traitr/man/aContext.Rd | 37 +++--
traitr-0.14/traitr/man/aController.Rd | 21 ++
traitr-0.14/traitr/man/aDialog.Rd | 97 +++++++------
traitr-0.14/traitr/man/aFrame.Rd | 43 ++++-
traitr-0.14/traitr/man/aGroup.Rd | 40 ++++-
traitr-0.14/traitr/man/aModel.Rd | 21 ++
traitr-0.14/traitr/man/aNotebook.Rd | 45 ++++--
traitr-0.14/traitr/man/aNotebookPage.Rd | 30 ++--
traitr-0.14/traitr/man/aPanedGroup.Rd | 40 ++++-
traitr-0.14/traitr/man/aTableLayout.Rd | 42 ++++-
traitr-0.14/traitr/man/aView.Rd | 21 ++
traitr-0.14/traitr/man/anExpandGroup.Rd | 43 ++++-
traitr-0.14/traitr/man/anItemGroup.Rd | 62 +++++---
traitr-0.14/traitr/man/buttonItem.Rd | 72 ++++++---
traitr-0.14/traitr/man/choiceItem.Rd | 79 +++++++---
traitr-0.14/traitr/man/dataframeItem.Rd | 33 +++-
traitr-0.14/traitr/man/dateItem.Rd | 43 ++++-
traitr-0.14/traitr/man/dfEditItem.Rd | 21 ++
traitr-0.14/traitr/man/dialogMaker.Rd | 57 +++++--
traitr-0.14/traitr/man/expressionItem.Rd | 38 +++--
traitr-0.14/traitr/man/fileItem.Rd | 32 +++-
traitr-0.14/traitr/man/formulaItem.Rd | 33 +++-
traitr-0.14/traitr/man/get_with_default.Rd | 23 ++-
traitr-0.14/traitr/man/graphicDeviceItem.Rd | 55 +++++--
traitr-0.14/traitr/man/imageItem.Rd | 40 ++++-
traitr-0.14/traitr/man/integerItem.Rd | 37 +++--
traitr-0.14/traitr/man/itemList.Rd | 104 ++++++++------
traitr-0.14/traitr/man/labelItem.Rd | 33 +++-
traitr-0.14/traitr/man/misc.Rd |only
traitr-0.14/traitr/man/numericItem.Rd | 43 ++++-
traitr-0.14/traitr/man/rangeItem.Rd | 42 ++++-
traitr-0.14/traitr/man/separatorItem.Rd | 25 ++-
traitr-0.14/traitr/man/stringItem.Rd | 44 ++++-
traitr-0.14/traitr/man/tableItem.Rd | 44 ++++-
traitr-0.14/traitr/man/traitR-package.Rd | 16 +-
traitr-0.14/traitr/man/trueFalseItem.Rd | 42 ++++-
traitr-0.14/traitr/man/variableSelectorItem.Rd | 47 ++++--
traitr-0.14/traitr/vignettes |only
98 files changed, 2011 insertions(+), 642 deletions(-)
Title: Utility functions for dealing with data in Opasnet
(www.opasnet.org) environment.
Diff between OpasnetUtils versions 1.0.0 dated 2013-07-17 and 1.1.0 dated 2014-09-01
Description: This package is primarily developed for executing open assessments and modeling in Opasnet environment (http://www.opasnet.org).
The operating principle of this package is maximum openness and modularity. Variables are defined publicly on wiki pages using wiki inputs/tables,
our database and R code. Using any predefined variable is very easy: fetch the variable from our servers (or your own) and evaluate it. Actual
evaluation of variables is done lazily by default: when the evaluation of a variable is explicitly called, all variables it is dependent
on are evaluated recursively. There are also a couple of impact assessment tools such as GIS functions in the package.
To learn more go to \url{http://en.opasnet.org/w/Modelling_in_Opasnet}.
Author: Teemu Rintala, Einari Happonen, Jouni Tuomisto
Maintainer: Teemu Rintala
OpasnetUtils-1.0.0/OpasnetUtils/INSTALLATION |only
OpasnetUtils-1.0.0/OpasnetUtils/man/OpasnetUtils-package.Rd |only
OpasnetUtils-1.1.0/OpasnetUtils/DESCRIPTION | 17
OpasnetUtils-1.1.0/OpasnetUtils/MD5 | 65 +-
OpasnetUtils-1.1.0/OpasnetUtils/NAMESPACE | 22
OpasnetUtils-1.1.0/OpasnetUtils/R/CheckDecisions.r | 130 ++---
OpasnetUtils-1.1.0/OpasnetUtils/R/CollapseMarginal.r | 95 +--
OpasnetUtils-1.1.0/OpasnetUtils/R/ComputeDependencies.r | 14
OpasnetUtils-1.1.0/OpasnetUtils/R/DropAll.r | 2
OpasnetUtils-1.1.0/OpasnetUtils/R/GIS_methods.r | 305 ++++--------
OpasnetUtils-1.1.0/OpasnetUtils/R/Interpret.r | 118 ++++
OpasnetUtils-1.1.0/OpasnetUtils/R/OPrint.r | 68 ++
OpasnetUtils-1.1.0/OpasnetUtils/R/ORBind.r | 84 ++-
OpasnetUtils-1.1.0/OpasnetUtils/R/OVariable.r | 110 +++-
OpasnetUtils-1.1.0/OpasnetUtils/R/Oapply.r | 23
OpasnetUtils-1.1.0/OpasnetUtils/R/Openv.r |only
OpasnetUtils-1.1.0/OpasnetUtils/R/Optimize.R |only
OpasnetUtils-1.1.0/OpasnetUtils/R/odebug.R |only
OpasnetUtils-1.1.0/OpasnetUtils/R/odist.R |only
OpasnetUtils-1.1.0/OpasnetUtils/R/ograph.R |only
OpasnetUtils-1.1.0/OpasnetUtils/R/opasnet.R | 61 ++
OpasnetUtils-1.1.0/OpasnetUtils/R/opbase.R | 73 ++
OpasnetUtils-1.1.0/OpasnetUtils/R/ova2spat.R |only
OpasnetUtils-1.1.0/OpasnetUtils/R/unkeep.R |only
OpasnetUtils-1.1.0/OpasnetUtils/man/Check.Rd | 27 -
OpasnetUtils-1.1.0/OpasnetUtils/man/CollapseMarginal.Rd | 9
OpasnetUtils-1.1.0/OpasnetUtils/man/GIS.Rd | 15
OpasnetUtils-1.1.0/OpasnetUtils/man/Optimize.Rd |only
OpasnetUtils-1.1.0/OpasnetUtils/man/Ovariable.Rd | 7
OpasnetUtils-1.1.0/OpasnetUtils/man/continuousOps.Rd |only
OpasnetUtils-1.1.0/OpasnetUtils/man/fillna.Rd | 1
OpasnetUtils-1.1.0/OpasnetUtils/man/interpret.Rd | 4
OpasnetUtils-1.1.0/OpasnetUtils/man/odebug.Rd |only
OpasnetUtils-1.1.0/OpasnetUtils/man/odist.Rd |only
OpasnetUtils-1.1.0/OpasnetUtils/man/opasnet.Rd | 12
OpasnetUtils-1.1.0/OpasnetUtils/man/opbase.Rd | 6
OpasnetUtils-1.1.0/OpasnetUtils/man/openv.Rd |only
OpasnetUtils-1.1.0/OpasnetUtils/man/oprint.Rd | 17
OpasnetUtils-1.1.0/OpasnetUtils/man/orbind.Rd | 1
OpasnetUtils-1.1.0/OpasnetUtils/man/ovariable-class.Rd | 1
OpasnetUtils-1.1.0/OpasnetUtils/man/unkeep.Rd |only
41 files changed, 860 insertions(+), 427 deletions(-)
Title: Omics Data Integration Project
Diff between mixOmics versions 5.0-2 dated 2014-08-10 and 5.0-3 dated 2014-09-01
Description: The package provide statistical integrative techniques and
variants to analyse highly dimensional data sets: regularized
CCA and sparse PLS to unravel relationships between two
heterogeneous data sets of size (nxp) and (nxq) where the p and
q variables are measured on the same samples or individuals n.
These data may come from high throughput technologies, such as
omics data (e.g. transcriptomics, metabolomics or proteomics
data) that require an integrative or joint analysis. However,
mixOmics can also be applied to any other large data sets where
p + q >> n. rCCA is a regularized version of CCA to deal with
the large number of variables. sPLS allows variable selection
in a one step procedure and two frameworks are proposed:
regression and canonical analysis. Numerous graphical outputs
are provided to help interpreting the results. Recent
methodological developments include: sparse PLS-Discriminant
Analysis, Independent Principal Component Analysis and
multilevel analysis using variance decomposition of the data.
Author: Sebastien Dejean, Ignacio Gonzalez, Kim-Anh Le Cao with
contributions from Pierre Monget, Jeff Coquery, FangZou Yao,
Benoit Liquet, Florian Rohart
Maintainer: Kim-Anh Le Cao
DESCRIPTION | 6
MD5 | 20 +-
NAMESPACE | 1
NEWS | 13 +
R/perf.R | 124 ++++---------
R/plotIndiv.R | 94 ++-------
R/predict.R | 513 +++++++++++++++++++++++++++---------------------------
R/valid.R |only
man/perf.Rd | 11 -
man/predict.Rd | 227 ++++++++++++-----------
man/select.var.Rd | 2
man/valid.Rd |only
12 files changed, 485 insertions(+), 526 deletions(-)
Title: Statistical Analysis of Mixed Ploidy Populations
Diff between StAMPP versions 1.2 dated 2014-03-10 and 1.3 dated 2014-09-01
Description: StAMPP allows users to calculate pairwise Nei's Genetic Distances (Nei 1972), pairwise Fixation
Indexes (Fst) (Weir & Cockerham 1984) and also Genomic Relationship matrixes following Yang et al. (2010) in mixed and single
ploidy populations. Bootstrapping across loci is implemented during Fst calculation to generate confidence intervals and p-values
around pairwise Fst values. StAMPP utilises SNP genotype data of any ploidy level (with the ability to handle missing data) and is coded to
utilise multithreading where available to allow efficient analysis of large datasets. StAMPP is able to handle genotype data from genlight objects
allowing integration with other packages such adegenet.
Please refer to LW Pembleton, NOI Cogan & JW Forster, 2013, Molecular Ecology Resources, 13(5), 946-952. doi:10.1111/1755-0998.12129 for the appropriate citation and user manual. Thank you in advance.
Author: LW Pembleton
Maintainer: LW Pembleton
ChangeLog | 8 +++++++-
DESCRIPTION | 10 +++++-----
MD5 | 18 +++++++++---------
R/stampp2genlight.R | 2 +-
R/stamppAmova.R | 4 +++-
R/stamppConvert.R | 2 +-
R/stamppFst.R | 2 +-
R/stamppGmatrix.R | 2 +-
R/stamppNeisD.R | 2 +-
R/stamppPhylip.R | 2 +-
10 files changed, 30 insertions(+), 22 deletions(-)
Title: Working with frequency tables
Diff between freqweights versions 0.1.0 dated 2014-05-21 and 0.1.1 dated 2014-09-01
Description: The frequency of a particular data value is the number of times it
occurs. A frequency table is a table of values with their corresponding
frequencies. Frequency weights are integer numbers that indicate how many
cases each case represents. This package provides some functions to work
with such type of collected data.
Author: Emilio Torres-Manzanera
Maintainer: Emilio Torres-Manzanera
DESCRIPTION | 8 +--
MD5 | 36 ++++++++---------
NAMESPACE | 2
NEWS | 5 ++
R/clarachunk.R | 17 +++++---
R/tablefreq.R | 9 ++--
man/biglmfreq.Rd | 28 ++++++-------
man/clarachunk.Rd | 38 ++++++------------
man/evaldp.Rd | 13 ++----
man/freqweights-package.Rd | 17 ++++----
man/hclustvfreq.Rd | 34 ++++------------
man/lmfreq.Rd | 32 +++++++--------
man/make.readchunk.Rd | 34 +++++++---------
man/pcafreq.Rd | 38 ++++++------------
man/preprocesshflights.Rd | 3 -
man/quickround.Rd | 22 ++--------
man/statsfreq.Rd | 60 ++++++++++++----------------
man/tablefreq.Rd | 83 +++++++++++++---------------------------
tests/testthat/test-tablefreq.R | 8 +--
19 files changed, 207 insertions(+), 280 deletions(-)
Title: Variable selection for supervised classification in high
dimension
Diff between FADA versions 1.0 dated 2014-07-10 and 1.1 dated 2014-09-01
Description: The functions provided in the FADA (Factor Adjusted Discriminant Analysis) package aim at performing
supervised classification models and variable selection on dependent
covariates. The classification procedures are combined with a factor
modeling of dependence among covariates. The available procedures are Lasso
regularized logistic model (see Friedman et al. (2010)), sparse linear
discriminant analysis (see Clemmensen et al. (2011)), shrinkage linear and
diagonal discriminant analysis (see M. Ahdesmaki et al. (2010)).
Author: Emeline Perthame (Agrocampus Ouest, Rennes, France), Chloe Friguet
(Universite de Bretagne Sud, Vannes, France) and David Causeur (Agrocampus
Ouest, Rennes, France)
Maintainer: David Causeur
FADA-1.0/FADA/data/dta.rda |only
FADA-1.0/FADA/data/test.rda |only
FADA-1.0/FADA/man/dta.Rd |only
FADA-1.0/FADA/man/test.Rd |only
FADA-1.1/FADA/DESCRIPTION | 6
FADA-1.1/FADA/MD5 | 23 -
FADA-1.1/FADA/NAMESPACE | 1
FADA-1.1/FADA/R/funcFADA.R | 655 ++++++++++++++++++++------------------
FADA-1.1/FADA/data/data.test.rda |only
FADA-1.1/FADA/data/data.train.rda |only
FADA-1.1/FADA/data/datalist | 4
FADA-1.1/FADA/man/FA.Rd | 15
FADA-1.1/FADA/man/FADA-package.Rd | 21 -
FADA-1.1/FADA/man/FADA.Rd | 8
FADA-1.1/FADA/man/data.test.Rd |only
FADA-1.1/FADA/man/data.train.Rd |only
FADA-1.1/FADA/man/decorrelate.Rd |only
17 files changed, 404 insertions(+), 329 deletions(-)
Title: Multivariate Chebyshev interpolation
Diff between chebpol versions 1.3-1040 dated 2013-07-28 and 1.3-1367 dated 2014-09-01
Description: The package contains methods for creating multivariate Chebyshev
approximation of functions on a hypercube. Some methods for non-Chebyshev grids are also provided.
Author: Simen Gaure, Ragnar Frisch Centre for Economic Research, Oslo, Norway
Maintainer: Simen Gaure
chebpol-1.3-1040/chebpol/aclocal.m4 |only
chebpol-1.3-1367/chebpol/DESCRIPTION | 8 +-
chebpol-1.3-1367/chebpol/MD5 | 17 ++---
chebpol-1.3-1367/chebpol/build |only
chebpol-1.3-1367/chebpol/cleanup | 3
chebpol-1.3-1367/chebpol/configure | 56 ++++++-----------
chebpol-1.3-1367/chebpol/configure.ac | 5 -
chebpol-1.3-1367/chebpol/inst/doc/chebpol.pdf |binary
chebpol-1.3-1367/chebpol/src/build/autoconf/aclocal.m4 |only
chebpol-1.3-1367/chebpol/tests/all.R | 2
chebpol-1.3-1367/chebpol/tests/all.Rout.save | 15 +---
11 files changed, 46 insertions(+), 60 deletions(-)
Title: A Google Analytics API client for R
Diff between RGA versions 0.1.1 dated 2014-08-20 and 0.1.2 dated 2014-09-01
Description: Provides functions for accessing and retrieving data from the
Google Analytics APIs (https://developers.google.com/analytics/). Supports
OAuth 2.0 authorization. Package provides access to the Management, Core
Reporting, Multi-Channel Funnels Reporting, Real Time Reporting and
Metadata APIs. Access to all the Google Analytics accounts which the user
has access to. Auto-pagination to return more than 10,000 rows of the
results by combining multiple data requests. Also the RGA package provides
shiny app to explore the core reporting API dimensions and metrics.
Author: Artem Klevtsov [aut, cre],
Philipp Upravitelev [ctb],
Olga Shramko [ctb]
Maintainer: Artem Klevtsov
DESCRIPTION | 6 +++---
MD5 | 10 +++++-----
R/convert.R | 12 ------------
R/data.R | 2 +-
R/mgmt.R | 60 ++++++++++++++++++++++++++++++------------------------------
man/ga.Rd | 2 +-
6 files changed, 40 insertions(+), 52 deletions(-)
Title: Package for robust estimation using heavy-tailed distributions
Diff between heavy versions 0.2-3 dated 2013-03-22 and 0.2-35 dated 2014-09-01
Description: This package contains functions to perform robust estimation considering
heavy-tailed distributions. Currently, the package includes linear regression, linear
mixed-effect models, multivariate location and scatter estimation, penalized splines
and random variate generation.
Author: Felipe Osorio
Maintainer: Felipe Osorio
DESCRIPTION | 19 +++++++++----------
MD5 | 40 +++++++++++++++++++++++-----------------
NAMESPACE | 9 ++++++---
R/control.R | 2 +-
R/heavyFit.R |only
data/creatinine.rda |only
inst/CITATION | 12 ++++++------
man/creatinine.Rd |only
man/cyt.Rd | 6 +++---
man/dental.Rd | 2 +-
man/heavy.control.Rd | 25 +++++++++++++------------
man/heavy.family.Rd | 11 +++++++----
man/heavyFit.Rd |only
man/heavyLm.Rd | 15 ++++++++++++++-
man/heavyLme.Rd | 19 +++++++++++++++++--
man/heavyPS.Rd | 25 +++++++++++++++++++++++--
man/life.Rd | 2 +-
man/rmcnorm.Rd | 2 +-
man/rmslash.Rd | 2 +-
man/rmt.Rd | 2 +-
src/family.c | 14 ++++++++------
src/init.c | 10 ++++++----
src/mv_fit.c |only
src/mv_fit.h |only
24 files changed, 141 insertions(+), 76 deletions(-)