Title: Graphical Integrated Text Mining Solution
Diff between RcmdrPlugin.temis versions 0.7.1 dated 2014-09-06 and 0.7.2 dated 2014-09-06
More information about RcmdrPlugin.temis at CRAN
Description: An R Commander plug-in providing an integrated solution to perform
a series of text mining tasks such as importing and cleaning a corpus, and
analyses like terms and documents counts, vocabulary tables, terms
co-occurrences and documents similarity measures, time series analysis,
correspondence analysis and hierarchical clustering. Corpora can be imported
from spreadsheet-like files, directories of raw text files, Twitter queries,
as well as from Dow Jones Factiva, LexisNexis, Europresse and Alceste files.
Author: Milan Bouchet-Valat [aut, cre],
Gilles Bastin [aut]
Maintainer: Milan Bouchet-Valat
DESCRIPTION | 6 +++---
MD5 | 6 +++---
NEWS | 3 +++
R/importCorpus.R | 2 +-
4 files changed, 10 insertions(+), 7 deletions(-)
Permanent link
Title: Hierarchical modelling of faecal egg counts
Diff between eggCounts versions 0.2 dated 2013-11-05 and 0.3 dated 2014-09-06
Description: This package implements hierarchical models
for faecal egg count data to assess anthelmintic
efficacy. Bayesian inference is done via MCMC sampling.
Author: Michaela Paul [aut], Reinhard Furrer [cre, ctb]
Maintainer: Reinhard Furrer
ChangeLog |only
DESCRIPTION | 17 +++++++++++------
MD5 | 13 +++++++++----
R/FECR_PoGa.R | 6 ++++--
R/profile.R |only
R/updates.R | 21 ++++++++++++++-------
inst |only
tests/regtest-fecModelling.R | 6 +++---
tests/regtest-fecModelling.Rout.save |only
9 files changed, 41 insertions(+), 22 deletions(-)
Title: Estimation of Weight Functions in Meta Analysis
Diff between selectMeta versions 1.0.6 dated 2014-02-06 and 1.0.7 dated 2014-09-06
Description: Publication bias, the fact that studies identified for inclusion in a meta analysis do not represent all studies on the topic of interest, is commonly recognized as a threat to the validity of the results of a meta analysis. One way to explicitly model publication bias is via selection models or weighted probability distributions. In this package we provide implementations of several parametric and nonparametric weight functions. The novelty in Rufibach (2011) is the proposal of a non-increasing variant of the nonparametric weight function of Dear & Begg (1992). The new approach potentially offers more insight in the selection process than other methods, but is more flexible than parametric approaches. To maximize the log-likelihood function proposed by Dear & Begg (1992) under a monotonicity constraint we use a differential evolution algorithm proposed by Ardia et al (2010a, b) and implemented in Mullen et al (2009). In addition, we offer a method to compute a confidence interval for the overall effect size theta, adjusted for selection bias as well as a function that computes the simulation-based p-value to assess the null hypothesis of no selection as described in Rufibach (2011, Section 6).
Author: Kaspar Rufibach
Maintainer: Kaspar Rufibach
DESCRIPTION | 10 ++++-----
MD5 | 10 ++++-----
NAMESPACE | 49 ++++++++++++++++++++++------------------------
data/education.rda |binary
data/passive_smoking.rda |binary
man/selectMeta-package.Rd | 6 ++---
6 files changed, 37 insertions(+), 38 deletions(-)
Title: Least Squares, Logistic, and Cox-Regression with Ordered
Predictors
Diff between OrdFacReg versions 1.0.4 dated 2014-02-06 and 1.0.5 dated 2014-09-06
Description: In biomedical studies, researchers are often interested in assessing the association between one or more ordinal explanatory variables and an outcome variable, at the same time adjusting for covariates of any type. The outcome variable may be continuous, binary, or represent censored survival times. In the absence of a precise knowledge of the response function, using monotonicity constraints on the ordinal variables improves efficiency in estimating parameters, especially when sample sizes are small. This package implements an active set algorithm that efficiently computes such estimators.
Author: Kaspar Rufibach
Maintainer: Kaspar Rufibach
DESCRIPTION | 14 +++++------
MD5 | 8 +++---
NAMESPACE | 58 ++++++++++++++++++++++++-----------------------
NEWS | 6 +++-
man/ordFacReg-package.Rd | 2 -
5 files changed, 46 insertions(+), 42 deletions(-)
Title: Estimate a Log-Concave Probability Density from iid Observations
Diff between logcondens versions 2.1.1 dated 2014-02-18 and 2.1.2 dated 2014-09-06
Description: Given independent and identically distributed observations X(1), ..., X(n), this package allows to compute the maximum likelihood estimator (MLE) of a density as well as a smoothed version of it under the assumption that the density is log-concave, see Rufibach (2007) and Duembgen and Rufibach (2009). The main function of the package is 'logConDens' that allows computation of the log-concave MLE and its smoothed version. In addition, we provide functions to compute (1) the value of the density and distribution function estimates (MLE and smoothed) at a given point (2) the characterizing functions of the estimator, (3) to sample from the estimated distribution, (5) to compute a two-sample permutation test based on log-concave densities, (6) the ROC curve based on log-concave estimates within cases and controls, including confidence intervals for given values of false positive fractions (7) computation of a confidence interval for the value of the true density at a fixed point. Finally, three datasets that have been used to illustrate log-concave density estimation are made available.
Author: Kaspar Rufibach
Maintainer: Kaspar Rufibach
logcondens-2.1.1/logcondens/R/ftilde.R |only
logcondens-2.1.2/logcondens/DESCRIPTION | 13
logcondens-2.1.2/logcondens/MD5 | 84 ++---
logcondens-2.1.2/logcondens/NAMESPACE | 2
logcondens-2.1.2/logcondens/NEWS | 5
logcondens-2.1.2/logcondens/R/c2hat.R | 172 +++++------
logcondens-2.1.2/logcondens/R/ftilde.r |only
logcondens-2.1.2/logcondens/R/logConCI.R | 2
logcondens-2.1.2/logcondens/build/vignette.rds |binary
logcondens-2.1.2/logcondens/data/brightstar.rda |binary
logcondens-2.1.2/logcondens/data/pancreas.rda |binary
logcondens-2.1.2/logcondens/data/reliability.rda |binary
logcondens-2.1.2/logcondens/inst/doc/logcondens.pdf |binary
logcondens-2.1.2/logcondens/man/Jfunctions.Rd | 2
logcondens-2.1.2/logcondens/man/Lhat_eta.Rd | 2
logcondens-2.1.2/logcondens/man/Local_LL.Rd | 2
logcondens-2.1.2/logcondens/man/Local_LL_all.Rd | 2
logcondens-2.1.2/logcondens/man/MLE.Rd | 2
logcondens-2.1.2/logcondens/man/Q00.Rd | 2
logcondens-2.1.2/logcondens/man/activeSetLogCon.Rd | 2
logcondens-2.1.2/logcondens/man/activeSetRoutines.Rd | 2
logcondens-2.1.2/logcondens/man/evaluateLogConDens.Rd | 2
logcondens-2.1.2/logcondens/man/icmaLogCon.Rd | 2
logcondens-2.1.2/logcondens/man/intECDF.Rd | 2
logcondens-2.1.2/logcondens/man/intF.Rd | 2
logcondens-2.1.2/logcondens/man/isoMean.Rd | 2
logcondens-2.1.2/logcondens/man/logConDens.Rd | 2
logcondens-2.1.2/logcondens/man/logconTwoSample.Rd | 2
logcondens-2.1.2/logcondens/man/logcondens-package.Rd | 6
logcondens-2.1.2/logcondens/man/maxDiffCDF.Rd | 2
logcondens-2.1.2/logcondens/man/plot.dlc.Rd | 2
logcondens-2.1.2/logcondens/man/preProcess.Rd | 2
logcondens-2.1.2/logcondens/man/qloglin.Rd | 2
logcondens-2.1.2/logcondens/man/quadDeriv.Rd | 2
logcondens-2.1.2/logcondens/man/quantilesLogConDens.Rd | 2
logcondens-2.1.2/logcondens/man/reparametrizations.Rd | 2
logcondens-2.1.2/logcondens/man/rlogcon.Rd | 2
logcondens-2.1.2/logcondens/man/robust.Rd | 2
logcondens-2.1.2/logcondens/man/summary.dlc.Rd | 2
logcondens-2.1.2/logcondens/vignettes/plots/-plot1.pdf |binary
logcondens-2.1.2/logcondens/vignettes/plots/-plot2.pdf |binary
logcondens-2.1.2/logcondens/vignettes/plots/-plot2sample.pdf |binary
logcondens-2.1.2/logcondens/vignettes/plots/-plotSimul.pdf |binary
logcondens-2.1.2/logcondens/vignettes/plots/-sim1.pdf |binary
44 files changed, 170 insertions(+), 164 deletions(-)
Title: R package for somoclu
Diff between Rsomoclu versions 1.3.1 dated 2014-04-10 and 1.4 dated 2014-09-06
Description: Somoclu is a cluster-oriented implementation of self-organizing maps. It relies on MPI for distributing the workload, and it can be accelerated by CUDA on a GPU cluster. A sparse kernel is also included, which is useful for training maps on vector spaces generated in text mining processes.
Author: Peter Wittek [aut], Shichao Gao [cre]
Maintainer: Shichao Gao
DESCRIPTION | 8 ++++----
MD5 | 14 +++++++-------
data/rgbs.txt.gz |binary
src/Rsomoclu.cpp | 13 +++++++++++++
src/denseCpuKernels.cpp | 17 ++++++++++++++++-
src/somoclu.h | 1 +
src/sparseCpuKernels.cpp | 20 ++++++++++++++++++--
src/trainOneEpoch.cpp | 20 ++++++++++++++++++++
8 files changed, 79 insertions(+), 14 deletions(-)
Title: NbClust package for determining the best number of clusters
Diff between NbClust versions 2.0.1 dated 2014-07-19 and 2.0.2 dated 2014-09-06
Description: NbClust package provides 30 indices for determining the optimal number of clusters in a dataset.
Author: Malika Charrad
Maintainer: Malika Charrad
DESCRIPTION | 9 ++--
MD5 | 6 +--
R/NbClust.R | 113 +++++++++++++++++++++++++++++++++------------------------
man/NbClust.Rd | 73 ++++++++++++++++++++++++++----------
4 files changed, 128 insertions(+), 73 deletions(-)
Title: Graphical Integrated Text Mining Solution
Diff between RcmdrPlugin.temis versions 0.7 dated 2014-06-12 and 0.7.1 dated 2014-09-06
More information about RcmdrPlugin.temis at CRAN
Description: An R Commander plug-in providing an integrated solution to perform
a series of text mining tasks such as importing and cleaning a corpus, and
analyses like terms and documents counts, vocabulary tables, terms
co-occurrences and documents similarity measures, time series analysis,
correspondence analysis and hierarchical clustering. Corpora can be imported
from spreadsheet-like files, directories of raw text files, Twitter queries,
as well as from Dow Jones Factiva, LexisNexis, Europresse and Alceste files.
Author: Milan Bouchet-Valat [aut, cre],
Gilles Bastin [aut]
Maintainer: Milan Bouchet-Valat
DESCRIPTION | 12 ++++++------
MD5 | 12 ++++++------
NEWS | 5 +++++
R/common.R | 21 +++++++++++++--------
R/importCorpus.R | 12 +++++++-----
R/output.R | 44 ++++++++++++++++++++++++++------------------
inst/etc/menus.txt | 4 ++--
7 files changed, 65 insertions(+), 45 deletions(-)
Permanent link
Title: HTML exportation for R objects
Diff between R2HTML versions 2.2.1 dated 2013-04-06 and 2.3.0 dated 2014-09-06
Description: Includes HTML function and methods to write in an HTML
file. Thus, making HTML reports is easy. Includes a function
that allows redirection on the fly, which appears to be very
useful for teaching purpose, as the student can keep a copy of
the produced output to keep all that he did during the course.
Package comes with a vignette describing how to write HTML
reports for statistical analysis. Finally, a driver for Sweave
allows to parse HTML flat files containing R code and to
automatically write the corresponding outputs (tables and
graphs).
Author: Eric Lecoutre [aut],
Milan Bouchet-Valat [cre, ctb],
Thomas Friedrichsmeier [ctb]
Maintainer: Milan Bouchet-Valat
R2HTML-2.2.1/R2HTML/INDEX |only
R2HTML-2.3.0/R2HTML/DESCRIPTION | 29 +
R2HTML-2.3.0/R2HTML/MD5 | 47 +-
R2HTML-2.3.0/R2HTML/NAMESPACE | 3
R2HTML-2.3.0/R2HTML/NEWS | 10
R2HTML-2.3.0/R2HTML/R/HTMLcore.R | 489 +++++++++++++----------------
R2HTML-2.3.0/R2HTML/R/HTMLlme.R | 4
R2HTML-2.3.0/R2HTML/R/LaTeX.R | 2
R2HTML-2.3.0/R2HTML/R/grid.R | 4
R2HTML-2.3.0/R2HTML/man/HTML.Rd | 11
R2HTML-2.3.0/R2HTML/man/HTML.cormat.Rd | 14
R2HTML-2.3.0/R2HTML/man/HTML.data.frame.Rd | 2
R2HTML-2.3.0/R2HTML/man/HTML.function.Rd | 2
R2HTML-2.3.0/R2HTML/man/HTML.latex.Rd | 5
R2HTML-2.3.0/R2HTML/man/HTML.title.Rd | 5
R2HTML-2.3.0/R2HTML/man/HTML2clip.Rd | 6
R2HTML-2.3.0/R2HTML/man/HTMLCSS.Rd | 2
R2HTML-2.3.0/R2HTML/man/HTMLInitFile.Rd | 21 -
R2HTML-2.3.0/R2HTML/man/HTMLInsertGraph.Rd | 4
R2HTML-2.3.0/R2HTML/man/HTMLStart.Rd | 12
R2HTML-2.3.0/R2HTML/man/HTMLbr.Rd | 7
R2HTML-2.3.0/R2HTML/man/HTMLgrid.Rd | 22 +
R2HTML-2.3.0/R2HTML/man/HTMLplot.Rd | 8
R2HTML-2.3.0/R2HTML/man/HTMLstem.Rd | 2
R2HTML-2.3.0/R2HTML/man/R2HTML-internal.Rd | 3
25 files changed, 361 insertions(+), 353 deletions(-)
Title: Implementation of sampling formulas for the unified neutral
model of biodiversity and biogeography, with or without guild
structure.
Diff between GUILDS versions 1.0 dated 2014-09-04 and 1.1 dated 2014-09-06
Description: The GUILDS package combines a range of sampling formulas for the unified neutral model of biogeography and biodiversity. Alongside the sampling formulas, it includes methods to perform maximum likelihood optimization of the sampling formulas, methods to generate data given the neutral model, and methods to estimate the expected species abundance distribution. Sampling formulas included in the GUILDS package are the Etienne Sampling Formula (Etienne 2005), the guild sampling formula, where guilds are assumed to differ in dispersal ability (Janzen 2014), and the guilds sampling formula conditioned on guild size (Janzen 2014).
Author: Thijs Janzen
Maintainer: Thijs Janzen
DESCRIPTION | 6 +++---
MD5 | 13 +++++++------
R/Condition.R | 2 +-
R/LogLikFunctions.R | 6 +++---
man/GUILDS-internal.Rd | 2 +-
man/GUILDS-package.Rd | 5 ++++-
src/KDA_R.cpp | 9 ++++-----
src/KDA_R2.h |only
8 files changed, 23 insertions(+), 20 deletions(-)
Title: An R interface to the web API of Statistics Sweden
Diff between sweSCB versions 0.3.5 dated 2014-07-22 and 0.3.6 dated 2014-09-06
Description: Interface for the REST API of Statistics Sweden. The
package offers methods to fetch information about the data hierarchy stored
behind the API; extract metadata; fetch actual data; and clean up the
results.
Author: Love Hansson, Thomas Reinholdsson, Mans Magnusson
Maintainer: Mans Magnusson
DESCRIPTION | 10 ++++------
MD5 | 28 ++++++++++++++--------------
NAMESPACE | 2 ++
README.md | 2 +-
man/baseURL.Rd | 10 ++++------
man/buildPath.Rd | 19 ++++++-------------
man/checkForLevels.Rd | 6 +++---
man/deparseLevels.Rd | 9 ++++-----
man/findData.Rd | 13 +++++--------
man/getContent.Rd | 5 +++--
man/scbGetData.Rd | 35 +++++++++--------------------------
man/scbGetDims.Rd | 8 ++++----
man/scbGetLevels.Rd | 15 +++++----------
man/scbGetMetadata.Rd | 20 +++++++-------------
man/sweSCB.Rd | 3 ++-
15 files changed, 73 insertions(+), 112 deletions(-)
Title: Functions to draw population pyramid
Diff between pyramid versions 1.3 dated 2012-03-15 and 1.4 dated 2014-09-06
Description: Drawing population pyramid using (1) data.frame or (2) vectors.
The former is named as pyramid() and the latter pyramids(), as wrapper
function of pyramid(). pyramidf() is the function to draw population
pyramid within the specified frame.
Author: Minato Nakazawa
Maintainer: Minato Nakazawa
DESCRIPTION | 16 +++++---
MD5 | 10 +++--
NAMESPACE | 6 ++-
NEWS | 4 ++
R/pyramid.R | 93 +++++++++++++++++++++++++++++++++++++++++++++++++++-
man/GunmaPop2010.Rd |only
man/pyramidf.Rd |only
7 files changed, 115 insertions(+), 14 deletions(-)
Title: raster: Geographic data analysis and modeling
Diff between raster versions 2.2-31 dated 2014-03-07 and 2.3-0 dated 2014-09-06
Description: Reading, writing, manipulating, analyzing and modeling of gridded spatial data. The package implements basic and high-level functions. Processing of very large files is supported.
Author: Robert J. Hijmans [cre, aut],
Jacob van Etten [ctb],
Matteo Mattiuzzi [ctb],
Michael Sumner [ctb],
Jonathan A. Greenberg [ctb],
Oscar Perpinan Lamigueiro [ctb],
Andrew Bevan [ctb],
Etienne B. Racine [ctb],
Ashton Shortridge [ctb]
Maintainer: Robert J. Hijmans
ChangeLog | 29 ++
DESCRIPTION | 12 -
MD5 | 264 +++++++++++++------------
R/GDALtransient.R | 10
R/addFiles.R | 2
R/aggregate.R | 4
R/aggregate_3d.R |only
R/aggregate_sp.R | 4
R/area.R | 16 -
R/artith.R | 8
R/as.data.frame.R | 36 ++-
R/boundaries.R | 24 --
R/buffer.R | 6
R/cellValues.R | 4
R/clump.R | 6
R/clusterR.R | 24 +-
R/coerce.R | 10
R/connection.R | 16 -
R/contour.R | 11 -
R/corLocal.R | 100 +++++++++
R/coverPolygons.R | 26 +-
R/cropSpatial.R | 20 -
R/direction.R | 4
R/distance.R | 2
R/distanceFromPoints.R | 2
R/distanceRows.R | 4
R/erase.R | 4
R/extractLines.R | 8
R/extractPoints.R | 29 ++
R/extractPolygons.R | 133 ++++++++-----
R/flip.R | 14 -
R/focalFun.R |only
R/gdalFormats.R | 2
R/getData.R | 8
R/getValuesBlock.R | 4
R/getValuesFocal.R | 15 +
R/gridDistance.R | 16 -
R/hdrEnvi.R | 8
R/hdrIDRISI.R | 2
R/hdrPRJ.R | 2
R/idwValue.R | 2
R/imageplot2.R | 66 +++++-
R/interpolate.R | 15 -
R/intersect.R | 4
R/intersect_sp.R | 41 ++--
R/isLonLat.R | 8
R/kml.R | 4
R/kml_multiple.R | 8
R/makeProjString.R | 12 -
R/mask.R | 469 ++++++++++++++++++++++++++++++++--------------
R/math.R | 7
R/minValue.R | 4
R/multiCore.R | 8
R/netCDFread.R | 20 -
R/netCDFreadCells.R | 40 ++-
R/netCDFtoRasterCD.R | 31 +--
R/netCDFtoRasterGMT.R | 16 -
R/netCDFtoStack.R | 50 ++--
R/netCDFutil.R | 2
R/netCDFwriteCD.R | 66 +++---
R/newPLot.R | 2
R/nsidcICE.R | 9
R/plotCT.R | 2
R/plotRGB.R | 4
R/plotRaster.R | 2
R/plotRaster2.R | 2
R/print.R | 4
R/progressBar.R | 4
R/project.R |only
R/projectRaster.R | 24 +-
R/randomize.R |only
R/raster.R | 8
R/rasterFromFile.R | 17 -
R/rasterFromGDAL.R | 32 +--
R/rasterFromRasterFile.R | 10
R/rasterOptions.R | 11 -
R/rasterToPoints.R | 2
R/rasterToPolygons.R | 24 +-
R/rasterizeLines.R | 4
R/rasterizePointsNGB.R |only
R/rasterizePolygons.R | 3
R/readCells.R | 20 +
R/readRasterBrick.R | 8
R/readRasterLayer.R | 8
R/resample.R | 12 -
R/rotate.R | 41 ++--
R/sampleRandom.R | 10
R/sampleRegular.R | 26 +-
R/scalebar.R | 2
R/select.R | 4
R/setMinMax.R | 5
R/show.R | 46 ++--
R/slopeAspect.R | 2
R/stack.R | 14 -
R/stackQuick.R | 11 -
R/subset.R | 14 -
R/symdif.R | 2
R/terrain.R | 2
R/tmpFile.R | 23 --
R/union_sp.R | 73 ++++++-
R/update.R | 58 ++---
R/which.max.R | 8
R/writeRaster.R | 1
R/writeStartStopGDAL.R | 8
R/writeValues.R | 6
R/xyValuesBuffer.R | 46 +++-
R/zoom.R | 32 ++-
build/vignette.rds |binary
inst/doc/Raster.pdf |binary
inst/doc/functions.pdf |binary
inst/doc/rasterfile.pdf |binary
man/adjacent.Rd | 3
man/aggregate.Rd | 11 -
man/boundaries.Rd | 20 +
man/buffer.Rd | 2
man/cluster.Rd | 31 ++-
man/contour.Rd | 29 --
man/corLocal.Rd | 21 +-
man/crop.Rd | 6
man/direction.Rd | 2
man/distance.Rd | 2
man/distanceFromPoints.Rd | 6
man/extract.Rd | 6
man/getData.Rd | 4
man/intersect.Rd | 6
man/isLonLat.Rd | 5
man/mask.Rd | 18 +
man/plotRGB.Rd | 8
man/raster-package.Rd | 2
man/raster.Rd | 2
man/rasterOptions.Rd | 10
man/rotate.Rd | 7
man/stack.Rd | 5
man/union.Rd | 8
man/zoom.Rd | 11 -
src/aggregate_get.c |only
136 files changed, 1675 insertions(+), 958 deletions(-)
Title: Multi-way standard error clustering
Diff between multiwayvcov versions 1.0.4 dated 2014-07-02 and 1.2.0 dated 2014-09-06
Description: This package exports two functions cluster.vcov, which implements
multi-way clustering using the method suggested by Cameron, Gelbach, &
Miller (2011) and cluster.boot, which implements cluster (or block)
bootstrapping for estimating variance-covariance matrices. Normal one and
two-way clustering matches the results of other common statistical
packages. Missing values are handled transparently and rudimentary
parallelization support is provided.
Author: Nathaniel Graham and Mahmood Arai and Bj
Maintainer: Nathaniel Graham
DESCRIPTION | 22 ++++++++-------
MD5 | 10 ++++--
NAMESPACE | 5 +++
R/cluster_boot.r |only
R/cluster_vcov.r | 75 +++++++++++++++++++++++++++++++++++-----------------
man/cluster.boot.Rd |only
man/cluster.vcov.Rd | 68 ++++++++++++++++++++++++++++++-----------------
7 files changed, 118 insertions(+), 62 deletions(-)
Title: A collection of statistical tools for biologists
Diff between asbio versions 1.0-5 dated 2014-05-15 and 1.1-1 dated 2014-09-06
Description: Contains functions from: Aho, K. (2014) Foundational and Applied Statistics for Biologists using R. CRC/Taylor and Francis, Boca Raton, FL.
Author: Ken Aho
Maintainer: Ken Aho
DESCRIPTION | 12 +--
MD5 | 98 +++++++++++++++---------------
NAMESPACE | 5 -
R/BDM.test.R | 1
R/Bayes.disc.r | 5 +
R/anm.mc.bvn.r | 3
R/anm.popgrowth.r | 7 +-
R/anm.samp.design.R | 3
R/bin2dec.r | 4 -
R/book.menu.r | 5 -
R/bplot.r | 54 ++++++++++++----
R/bv.boxplot.R | 127 ++++++++++++++++++++++++---------------
R/chi.plot.R | 50 +++++++--------
R/ci.boot.r | 8 +-
R/ci.mu.R | 4 -
R/ci.prat.ak.R | 132 ++++++++++++++++++++++++++++++++++------
R/ci.prat.r | 155 ++++++++++++++++++++++++++++--------------------
R/illusions.r | 5 +
R/loess.surf.R | 19 +++--
R/loglik.exp.plot.r | 2
R/loglik.norm.plot.r | 2
R/one.sample.t.R | 26 ++++----
R/one.sample.z.R | 21 ++++--
R/pairw.anova.R | 42 ++++++++++++-
R/pairw.fried.R | 8 +-
R/pairw.kw.R | 9 ++
R/qq.Plot.R |only
R/samp.dist.mech.r | 3
R/samp.dist.mech.tck.r | 2
R/selftest.pdfs.r | 54 ++++++++++++++++
R/selftest.stats.tck.R |only
build/vignette.rds |binary
data/bighornAZ.sel.rda |only
man/HL.mean.Rd | 2
man/Preston.dist.Rd | 2
man/bplot.rd | 15 ++--
man/bv.boxplot.Rd | 98 ++++++++++++++++++++++++++----
man/chi.plot.Rd | 27 ++++----
man/ci.mu.Rd | 8 +-
man/ci.p.rd | 5 -
man/ci.prat.ak.Rd | 50 +++++++++++----
man/ci.prat.rd | 46 ++++++++------
man/moose.sel.Rd | 15 ++++
man/one.sample.t.rd | 12 ++-
man/one.sample.z.Rd | 7 +-
man/paik.rd | 2
man/pairw.anova.Rd | 23 ++++---
man/pairw.fried.rd | 10 ++-
man/pairw.kw.rd | 7 +-
man/plot.pairw.rd | 34 +++++++---
man/qq.Plot.Rd |only
man/selftest.se.tck1.rd | 9 ++
52 files changed, 855 insertions(+), 383 deletions(-)