Title: An IPSUR Plugin for the R Commander
Description:
This package is an R Commander plugin that accompanies IPSUR, an Introduction to Probability and Statistics Using R.
Author: G. Jay Kerns [aut, cre],
Theophilus Boye [ctb],
Tyler Drombosky [ctb]
Maintainer: G. Jay Kerns
Diff between RcmdrPlugin.IPSUR versions 0.2-0 dated 2014-08-29 and 0.2-1 dated 2014-09-10
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- inst/etc/menus.txt | 36 ++++++++++++++++++------------------ man/RcmdrPlugin.IPSUR-package.Rd | 6 +++--- 4 files changed, 28 insertions(+), 28 deletions(-)
More information about RcmdrPlugin.IPSUR at CRAN
Permanent link
Title: Variable selection for generalized linear mixed models by
L1-penalized estimation
Description: Variable selection for generalized linear mixed models by L1-penalized estimation
Author: Andreas Groll
Maintainer: Andreas Groll
Diff between glmmLasso versions 1.3.1 dated 2014-07-10 and 1.3.2 dated 2014-09-10
DESCRIPTION | 8 MD5 | 18 R/glmmLasso.r | 896 ++++++++++++++++++------------------- R/glmm_final.r | 9 R/glmm_final.smooth.r | 6 R/glmm_final_multi_random.r | 6 R/glmm_final_multi_random_smooth.r | 14 R/logLik.glmmLasso.r | 8 demo/glmmLasso-soccer.r | 49 +- man/glmmLasso.rd | 38 - 10 files changed, 521 insertions(+), 531 deletions(-)
Title: Constrained Generalized Additive Model
Description: In this package, a constrained generalized additive model is fitted by the cgam routine. Given a set of predictors with or without shape or order restrictions, the maximum likelihood estimator for the constrained generalized additive model is found using an iteratively re-weighted cone projection algorithm. The cone information criterion (CIC) may be used to select the best combination of variables and shapes. This package depends on the R package coneproj.
Author: Mary C. Meyer and Xiyue Liao
Maintainer: Xiyue Liao
Diff between cgam versions 1.1 dated 2014-04-16 and 1.2 dated 2014-09-10
DESCRIPTION | 13 MD5 | 40 - NAMESPACE | 2 R/cgam.R | 1894 ++++++++++++++++++++++++++++++++++++++++++++--------- data/plasma.rda |only man/cgam.Rd | 119 +-- man/conc.Rd | 14 man/conv.Rd | 20 man/decr.Rd | 13 man/decr.conc.Rd | 13 man/decr.conv.Rd | 13 man/incr.Rd | 14 man/incr.conc.Rd | 13 man/incr.conv.Rd | 13 man/plasma.Rd |only man/plotpersp.Rd |only man/s.Rd |only man/s.conc.Rd |only man/s.conv.Rd |only man/s.decr.Rd |only man/s.decr.conc.Rd |only man/s.decr.conv.Rd |only man/s.incr.Rd |only man/s.incr.conc.Rd |only man/s.incr.conv.Rd |only man/tree.Rd | 12 man/umbrella.Rd | 14 27 files changed, 1793 insertions(+), 414 deletions(-)
Title: Segmented relationships in regression models with
breakpoints/changepoints estimation
Description: Given a regression model, segmented `updates' the model by adding one or more segmented relationships. Several variables with multiple breakpoints are allowed.
Author: Vito M. R. Muggeo [aut, cre]
Maintainer: Vito M. R. Muggeo
Diff between segmented versions 0.4-0.0 dated 2014-07-11 and 0.5-0.0 dated 2014-09-10
segmented-0.4-0.0/segmented/R/segmented.default.R |only segmented-0.4-0.0/segmented/man/segmented.default.Rd |only segmented-0.5-0.0/segmented/DESCRIPTION | 10 ++-- segmented-0.5-0.0/segmented/MD5 | 45 +++++++++---------- segmented-0.5-0.0/segmented/NAMESPACE | 3 - segmented-0.5-0.0/segmented/NEWS | 13 +++++ segmented-0.5-0.0/segmented/R/confint.segmented.R | 2 segmented-0.5-0.0/segmented/R/davies.test.r | 4 - segmented-0.5-0.0/segmented/R/intercept.r | 5 -- segmented-0.5-0.0/segmented/R/plot.segmented.R | 13 +++-- segmented-0.5-0.0/segmented/R/seg.control.R | 4 - segmented-0.5-0.0/segmented/R/seg.def.fit.boot.r |only segmented-0.5-0.0/segmented/R/seg.def.fit.r |only segmented-0.5-0.0/segmented/R/segmented.default.r |only segmented-0.5-0.0/segmented/R/segmented.glm.R | 21 ++++++++ segmented-0.5-0.0/segmented/R/segmented.lm.R | 26 ++++++++++ segmented-0.5-0.0/segmented/R/slope.R | 28 +++++++---- segmented-0.5-0.0/segmented/R/summary.segmented.R | 18 +++++++ segmented-0.5-0.0/segmented/data/down.rda |binary segmented-0.5-0.0/segmented/data/plant.rda |binary segmented-0.5-0.0/segmented/data/stagnant.rda |binary segmented-0.5-0.0/segmented/man/davies.test.Rd | 35 ++++++++------ segmented-0.5-0.0/segmented/man/seg.control.Rd | 12 ++++- segmented-0.5-0.0/segmented/man/seg.lm.fit.Rd | 25 ++++++++-- segmented-0.5-0.0/segmented/man/segmented-package.Rd | 12 +++-- segmented-0.5-0.0/segmented/man/segmented.Rd | 42 +++++++++++++++-- 26 files changed, 234 insertions(+), 84 deletions(-)
Title: Gaussian Graphs Models selection
Description: GGMselect is a package dedicated to graph estimation in Gaussian Graphical Models. The main functions return the adjacency matrix of an undirected graph estimated from a data matrix.
Author: Annie Bouvier, Christophe Giraud, Sylvie Huet, Verzelen N.
Maintainer: Annie Bouvier
Diff between GGMselect versions 0.1-8 dated 2013-12-12 and 0.1-9 dated 2014-09-10
DESCRIPTION | 8 ++--- MD5 | 57 +++++++++++++++++++++--------------------- NAMESPACE | 2 + NEWS | 17 ++++++++++-- R/MyFamily.R | 13 +++++---- build |only inst/doc/Notice.pdf |binary man/GGMselect-package.Rd | 14 +++++----- man/selectQE.Rd | 14 +++++----- src/Makevars | 5 ++- src/boucle.f | 2 - src/critQE.c | 5 ++- tests/bsch.Rout.save | 8 ++--- tests/penInf.Rout.save | 8 ++--- tests/raj.Rout.save | 54 ++++++++++++++++++++-------------------- tests/sh9.2012.Rout.save | 8 ++--- tests/shPUR.Rout.save | 8 ++--- tests/test1Fast.Rout.save | 8 ++--- tests/test1QE.Rout.save | 44 ++++++++++++++++---------------- tests/test2Fast.Rout.save | 8 ++--- tests/test2QE.Rout.save | 26 +++++++++---------- tests/test3Fast.Rout.save | 8 ++--- tests/test3QE.Rout.save | 62 +++++++++++++++++++++++----------------------- tests/test4Fast.R | 2 - tests/test4Fast.Rout.save | 10 +++---- tests/test4QE.Rout.save | 38 ++++++++++++++-------------- tests/test5Fast.Rout.save | 8 ++--- tests/test6Fast.Rout.save | 8 ++--- tests/test7Fast.Rout.save | 8 ++--- tests/testMyFam.Rout.save | 8 ++--- 30 files changed, 239 insertions(+), 222 deletions(-)
Title: Tools: moving window statistics, GIF, Base64, ROC AUC, etc.
Description: Contains several basic utility functions including: moving
(rolling, running) window statistic functions, read/write for
GIF and ENVI binary files, fast calculation of AUC, LogitBoost
classifier, base64 encoder/decoder, round-off-error-free sum
and cumsum, etc.
Author: Jarek Tuszynski
Maintainer: Harutyun Khachatryan
Diff between caTools versions 1.17 dated 2014-04-21 and 1.17.1 dated 2014-09-10
DESCRIPTION | 10 ++--- MD5 | 6 +-- R/runfunc.R | 103 +++++++++++++++++++++++++++++------------------------------ R/sumexact.R | 10 ++--- 4 files changed, 63 insertions(+), 66 deletions(-)
Title: Create Simple Packages Which Do Not Upset R CMD check
Description: Provides a function kitten() which create cute little
packages which pass R CMD check. This sets it apart from
package.skeleton() which it calls, and which leaves imperfect files
behind. As this is not exactly helpful for beginners, kitten() offers
an alternative.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel
Diff between pkgKitten versions 0.1.0 dated 2014-06-13 and 0.1.1 dated 2014-09-10
ChangeLog | 13 +++++++++ DESCRIPTION | 20 +++++++------- MD5 | 12 ++++---- NAMESPACE | 3 +- R/pkgKitten.R | 54 ++++++++++++++++++++++++++++---------- inst/NEWS.Rd |only man/kitten.Rd | 4 +- man/playWithPerPackageHelpPage.Rd |only 8 files changed, 75 insertions(+), 31 deletions(-)
Title: sjPlot - data visualization for statistics in social science
Description: Collection of several plotting / table output functions for
visualizing data and utility functions.
Author: Daniel Lüdecke
Maintainer: Daniel Luedecke
Diff between sjPlot versions 1.4.3 dated 2014-08-14 and 1.5 dated 2014-09-10
sjPlot-1.4.3/sjPlot/man/sju.betaCoef.Rd |only sjPlot-1.4.3/sjPlot/man/sju.chi2.gof.Rd |only sjPlot-1.4.3/sjPlot/man/sju.cramer.Rd |only sjPlot-1.4.3/sjPlot/man/sju.cronbach.Rd |only sjPlot-1.4.3/sjPlot/man/sju.mic.Rd |only sjPlot-1.4.3/sjPlot/man/sju.mwu.Rd |only sjPlot-1.4.3/sjPlot/man/sju.phi.Rd |only sjPlot-1.4.3/sjPlot/man/sju.reliability.Rd |only sjPlot-1.4.3/sjPlot/man/sju.table.values.Rd |only sjPlot-1.5/sjPlot/DESCRIPTION | 15 sjPlot-1.5/sjPlot/MD5 | 191 +- sjPlot-1.5/sjPlot/NAMESPACE | 177 +- sjPlot-1.5/sjPlot/NEWS | 656 +++---- sjPlot-1.5/sjPlot/R/helpfunctions.R | 229 -- sjPlot-1.5/sjPlot/R/sjPlotAncovaLSMeans.R | 73 sjPlot-1.5/sjPlot/R/sjPlotAnova.R | 47 sjPlot-1.5/sjPlot/R/sjPlotClusterAnalysis.R | 102 - sjPlot-1.5/sjPlot/R/sjPlotCorr.R | 29 sjPlot-1.5/sjPlot/R/sjPlotFrequencies.R | 100 - sjPlot-1.5/sjPlot/R/sjPlotGroupFrequencies.R | 71 sjPlot-1.5/sjPlot/R/sjPlotInteractions.R | 40 sjPlot-1.5/sjPlot/R/sjPlotLikert.R | 28 sjPlot-1.5/sjPlot/R/sjPlotLinreg.R | 80 sjPlot-1.5/sjPlot/R/sjPlotLinregMultiple.R | 43 sjPlot-1.5/sjPlot/R/sjPlotOdds.R | 33 sjPlot-1.5/sjPlot/R/sjPlotOddsMultiple.R | 39 sjPlot-1.5/sjPlot/R/sjPlotPCA.R | 37 sjPlot-1.5/sjPlot/R/sjPlotPropTable.R | 32 sjPlot-1.5/sjPlot/R/sjPlotScatter.R | 919 +++++----- sjPlot-1.5/sjPlot/R/sjPlotStackFrequencies.R | 38 sjPlot-1.5/sjPlot/R/sjRecode.R | 2157 +++++++++++-------------- sjPlot-1.5/sjPlot/R/sjStatistics.R |only sjPlot-1.5/sjPlot/R/sjTabFrequencies.R | 105 + sjPlot-1.5/sjPlot/R/sjTabItemAnalysis.R | 870 +++++----- sjPlot-1.5/sjPlot/R/sjTabLinReg.R | 2 sjPlot-1.5/sjPlot/R/sjTabPCA.R | 1213 +++++++------- sjPlot-1.5/sjPlot/R/sjTabPropTable.R | 1558 +++++++++--------- sjPlot-1.5/sjPlot/README.md | 71 sjPlot-1.5/sjPlot/inst |only sjPlot-1.5/sjPlot/man/efc.Rd | 82 sjPlot-1.5/sjPlot/man/sjPlot-package.Rd | 16 sjPlot-1.5/sjPlot/man/sjc.cluster.Rd | 189 +- sjPlot-1.5/sjPlot/man/sjc.dend.Rd | 108 - sjPlot-1.5/sjPlot/man/sjc.elbow.Rd | 75 sjPlot-1.5/sjPlot/man/sjc.grpdisc.Rd | 112 - sjPlot-1.5/sjPlot/man/sjc.kgap.Rd | 157 + sjPlot-1.5/sjPlot/man/sjc.qclus.Rd | 603 ++++-- sjPlot-1.5/sjPlot/man/sji.SPSS.Rd | 103 - sjPlot-1.5/sjPlot/man/sji.convertToLabel.Rd | 73 sjPlot-1.5/sjPlot/man/sji.convertToValue.Rd | 70 sjPlot-1.5/sjPlot/man/sji.getValueLabels.Rd | 73 sjPlot-1.5/sjPlot/man/sji.getVariableLabels.Rd | 74 sjPlot-1.5/sjPlot/man/sji.setValueLabels.Rd | 92 - sjPlot-1.5/sjPlot/man/sji.setVariableLabels.Rd | 120 - sjPlot-1.5/sjPlot/man/sji.viewSPSS.Rd | 259 +-- sjPlot-1.5/sjPlot/man/sjp.aov1.Rd | 543 +++--- sjPlot-1.5/sjPlot/man/sjp.chi2.Rd | 208 +- sjPlot-1.5/sjPlot/man/sjp.corr.Rd | 430 ++-- sjPlot-1.5/sjPlot/man/sjp.emm.int.Rd | 304 ++- sjPlot-1.5/sjPlot/man/sjp.frq.Rd | 810 +++++---- sjPlot-1.5/sjPlot/man/sjp.glm.Rd | 561 +++--- sjPlot-1.5/sjPlot/man/sjp.glm.ma.Rd | 74 sjPlot-1.5/sjPlot/man/sjp.glmm.Rd | 553 +++--- sjPlot-1.5/sjPlot/man/sjp.grpfrq.Rd | 868 +++++----- sjPlot-1.5/sjPlot/man/sjp.likert.Rd | 590 +++--- sjPlot-1.5/sjPlot/man/sjp.lm.Rd | 466 +++-- sjPlot-1.5/sjPlot/man/sjp.lm.int.Rd | 418 ++-- sjPlot-1.5/sjPlot/man/sjp.lm.ma.Rd | 76 sjPlot-1.5/sjPlot/man/sjp.lm1.Rd | 359 ++-- sjPlot-1.5/sjPlot/man/sjp.lmm.Rd | 539 +++--- sjPlot-1.5/sjPlot/man/sjp.pca.Rd | 462 ++--- sjPlot-1.5/sjPlot/man/sjp.reglin.Rd | 186 +- sjPlot-1.5/sjPlot/man/sjp.scatter.Rd | 488 +++-- sjPlot-1.5/sjPlot/man/sjp.stackfrq.Rd | 586 +++--- sjPlot-1.5/sjPlot/man/sjp.vif.Rd | 56 sjPlot-1.5/sjPlot/man/sjp.xtab.Rd | 697 ++++---- sjPlot-1.5/sjPlot/man/sjs.betaCoef.Rd |only sjPlot-1.5/sjPlot/man/sjs.chi2.gof.Rd |only sjPlot-1.5/sjPlot/man/sjs.cramer.Rd |only sjPlot-1.5/sjPlot/man/sjs.cronbach.Rd |only sjPlot-1.5/sjPlot/man/sjs.mic.Rd |only sjPlot-1.5/sjPlot/man/sjs.mwu.Rd |only sjPlot-1.5/sjPlot/man/sjs.phi.Rd |only sjPlot-1.5/sjPlot/man/sjs.reliability.Rd |only sjPlot-1.5/sjPlot/man/sjs.table.values.Rd |only sjPlot-1.5/sjPlot/man/sjt.corr.Rd | 390 ++-- sjPlot-1.5/sjPlot/man/sjt.df.Rd | 327 ++- sjPlot-1.5/sjPlot/man/sjt.frq.Rd | 446 ++--- sjPlot-1.5/sjPlot/man/sjt.glm.Rd | 550 +++--- sjPlot-1.5/sjPlot/man/sjt.itemanalysis.Rd | 440 ++--- sjPlot-1.5/sjPlot/man/sjt.lm.Rd | 519 +++--- sjPlot-1.5/sjPlot/man/sjt.pca.Rd | 391 ++-- sjPlot-1.5/sjPlot/man/sjt.stackfrq.Rd | 425 ++-- sjPlot-1.5/sjPlot/man/sjt.xtab.Rd | 493 +++-- sjPlot-1.5/sjPlot/man/sju.adjustPlotRange.y.Rd | 91 - sjPlot-1.5/sjPlot/man/sju.aov1.levene.Rd | 57 sjPlot-1.5/sjPlot/man/sju.dicho.Rd | 76 sjPlot-1.5/sjPlot/man/sju.groupString.Rd |only sjPlot-1.5/sjPlot/man/sju.groupVar.Rd | 141 - sjPlot-1.5/sjPlot/man/sju.groupVarLabels.Rd | 160 - sjPlot-1.5/sjPlot/man/sju.mean.n.Rd |only sjPlot-1.5/sjPlot/man/sju.recode.Rd | 47 sjPlot-1.5/sjPlot/man/sju.recodeTo.Rd | 97 - sjPlot-1.5/sjPlot/man/sju.setNA.Rd | 62 sjPlot-1.5/sjPlot/man/sju.strpos.Rd |only sjPlot-1.5/sjPlot/man/sju.weight.Rd | 78 sjPlot-1.5/sjPlot/man/sju.weight2.Rd | 92 - sjPlot-1.5/sjPlot/man/sju.wordwrap.Rd | 58 108 files changed, 13661 insertions(+), 11714 deletions(-)
Title: Procedures to generate IRT adaptive tests (CAT)
Description: The catR package allows the generation of response patterns under computerized adaptive testing (CAT) framework, with the choice of several starting rules, next item selection routines, stopping rules and ability estimators. Control methods for item exposure and content balancing are also included.
Author: David Magis (U Liege, Belgium), Gilles Raiche (UQAM, Canada), Juan Ramon Barrada (U Zaragoza, Spain)
Maintainer: David Magis
Diff between catR versions 3.1 dated 2014-06-04 and 3.2 dated 2014-09-10
DESCRIPTION | 8 MD5 | 12 - NEWS | 36 +++ R/MEI.R | 2 R/eapEst.R | 2 R/genPolyMatrix.R | 2 R/randomCAT.R | 523 +++++++++++++++++++++++++++++------------------------- 7 files changed, 336 insertions(+), 249 deletions(-)
Title: Framework for the analysis of genomic prediction data using R
Description: The package was developed within the Synbreed project for synergistic plant and animal breeding (www.synbreed.tum.de). It contains a collection of functions required for genomic prediction in both plant and animal breeding. This covers data processing, data visualization and analysis. All functions are embedded within the framework of a single, unified data object. The implementation is flexible with respect to a wide range of data formats. This research was funded by the German Federal Ministry of Education and Research (BMBF) within the AgroClustEr Synbreed - Synergistic plant and animal breeding (FKZ 0315528A).
Author: Valentin Wimmer, Hans-Juergen Auinger, Theresa Albrecht, Chris-Carolin Schoen with contributions by Larry Schaeffer, Malena Erbe, Ulrike Ober, Christian Reimer, Yvonne Badke and Peter VandeHaar
Maintainer: Valentin Wimmer
Diff between synbreed versions 0.10-1 dated 2014-09-02 and 0.10-2 dated 2014-09-10
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- R/codeGeno.r | 18 +++++++++++++++++- R/plot.relationshipMatrix.r | 24 +++++++++++++++++++----- 4 files changed, 45 insertions(+), 15 deletions(-)
Title: Species distribution modeling
Description: Functions for species distribution modeling, that is, predicting entire geographic distributions form occurrences at a number of sites.
Author: Robert J. Hijmans, Steven Phillips, John Leathwick and Jane Elith
Maintainer: Robert J. Hijmans
Diff between dismo versions 0.9-3 dated 2013-12-15 and 1.0-5 dated 2014-09-10
dismo-0.9-3/dismo/inst/javasrc |only dismo-1.0-5/dismo/DESCRIPTION | 10 dismo-1.0-5/dismo/MD5 | 88 dismo-1.0-5/dismo/R/Mahalanobis.predict.R | 22 dismo-1.0-5/dismo/R/biogeomancer.R | 6 dismo-1.0-5/dismo/R/check.R | 2 dismo-1.0-5/dismo/R/circles.R | 2 dismo-1.0-5/dismo/R/circularArea.R | 2 dismo-1.0-5/dismo/R/diversity.R | 10 dismo-1.0-5/dismo/R/gbif.R | 61 dismo-1.0-5/dismo/R/gbm.fixed.R | 11 dismo-1.0-5/dismo/R/gbm.holdout.R | 31 dismo-1.0-5/dismo/R/gbm.interactions.R | 6 dismo-1.0-5/dismo/R/gbm.perspec.R | 6 dismo-1.0-5/dismo/R/gbm.plot.R | 25 dismo-1.0-5/dismo/R/gbm.plot.fits.R | 6 dismo-1.0-5/dismo/R/gbm.simplify.R | 342 - dismo-1.0-5/dismo/R/gbm.step.R | 693 +- dismo-1.0-5/dismo/R/gbm.utils.R | 69 dismo-1.0-5/dismo/R/geoIDW.R | 6 dismo-1.0-5/dismo/R/geocode.R | 9 dismo-1.0-5/dismo/R/gmap.R | 2 dismo-1.0-5/dismo/R/kfold.R | 5 dismo-1.0-5/dismo/R/maxent.R | 14 dismo-1.0-5/dismo/R/maxent.predict.R | 9 dismo-1.0-5/dismo/R/mess.R | 8 dismo-1.0-5/dismo/R/randomPoints.R | 17 dismo-1.0-5/dismo/R/rowMinMax.R |only dismo-1.0-5/dismo/R/threshold.R | 4 dismo-1.0-5/dismo/R/voronoi.R | 4 dismo-1.0-5/dismo/R/voronoiHull.R | 8 dismo-1.0-5/dismo/build/vignette.rds |binary dismo-1.0-5/dismo/inst/doc/brt.R | 32 dismo-1.0-5/dismo/inst/doc/brt.Rnw | 34 dismo-1.0-5/dismo/inst/doc/brt.pdf |binary dismo-1.0-5/dismo/inst/doc/sdm.R | 183 dismo-1.0-5/dismo/inst/doc/sdm.Rnw | 144 dismo-1.0-5/dismo/inst/doc/sdm.pdf | 7634 +++++++++++++++--------------- dismo-1.0-5/dismo/java |only dismo-1.0-5/dismo/man/bioclim.Rd | 2 dismo-1.0-5/dismo/man/gbif.Rd | 2 dismo-1.0-5/dismo/man/gbm.step.Rd | 27 dismo-1.0-5/dismo/man/gmap.Rd | 6 dismo-1.0-5/dismo/man/randomPoints.Rd | 3 dismo-1.0-5/dismo/vignettes/brt.Rnw | 34 dismo-1.0-5/dismo/vignettes/sdm.Rnw | 144 46 files changed, 4985 insertions(+), 4738 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-05-04 1.1-11-5
2014-01-23 1.1-11-4
2013-11-26 1.1-11-1
2013-09-08 1.1-9-8
2013-08-07 1.1-8-8
2011-12-04 1.0-12-3
2011-11-18 1.0-11-17
2011-11-15 1.0-2
2011-11-10 1.0-1
2011-11-02 0.01-4
Title: Simulation of Diffusion Processes
Description: The package Sim.DiffProc is an object created in R environment for simulation and modeling of stochastic differential equations (SDE's) the type Ito and Stratonovich. This package contains many objects, the numerical methods to find the solutions to SDE's (1, 2 and 3-dim), with a possibility for simulates a flows trajectories,with good accuracy. Many theoretical problems on the SDE's have become the object of practical research, as statistical analysis and simulation of solution of SDE's, enabled many searchers in different domains to use these equations to modeling and to analyse practical problems, in financial and actuarial modeling and other areas of application, for example modelling and simulate of dispersion in shallow water using the attractive center (Boukhetala K, 1996). We hope that the package presented here and the updated survey on the subject might be of help for practitioners, postgraduate and PhD students, and researchers in the field who might want to implement new methods.
Author: Arsalane Chouaib Guidoum, Kamal Boukhetala
Maintainer: Arsalane Chouaib Guidoum
Diff between Sim.DiffProc versions 2.8 dated 2014-08-19 and 2.9 dated 2014-09-10
DESCRIPTION | 10 MD5 | 50 +- NAMESPACE | 61 ++- NEWS | 4 R/bridgesde.R | 765 +++++++++++++++++++++++++++++++++----------- R/utils.R | 94 +++++ R/zzz.r | 4 demo/Sim.DiffProc.R | 19 + inst/doc/FitSDE.Rnw | 7 inst/doc/FitSDE.pdf |binary inst/doc/Introduction.R | 6 inst/doc/Introduction.Rnw | 12 inst/doc/Introduction.pdf |binary inst/doc/SDEs.R | 74 ++-- inst/doc/SDEs.Rnw | 15 inst/doc/SDEs.pdf |binary man/Sim.DiffProc-package.Rd | 8 man/bridgesde1d.Rd | 47 +- man/bridgesde2d.Rd | 56 ++- man/bridgesde3d.Rd | 80 ++-- man/plot2d.Rd | 1 tests/bridgesde.R | 13 vignettes/Core_FitSDE.tex | 208 +++++++++++ vignettes/FitSDE.Rnw | 7 vignettes/Introduction.Rnw | 12 vignettes/SDEs.Rnw | 15 26 files changed, 1170 insertions(+), 398 deletions(-)
Title: Modified Maximum Contrast Method
Description: This package provides an implementation of modified
maximum contrast methods and the maximum contrast method. This
version supports functions mmcm.mvt, mcm.mvt that gives P-value
by using randomized quasi-Monte Carlo method from pmvt function
of package mvtnorm, and mmcm.resamp that gives P-value by using
the permutation method.
Author: Kengo NAGASHIMA and Yasunori SATO
Maintainer: Kengo NAGASHIMA
Diff between mmcm versions 1.2-4 dated 2013-01-20 and 1.2-5 dated 2014-09-10
DESCRIPTION | 23 ++--- MD5 | 26 ++--- NAMESPACE | 5 - NEWS | 6 + R/mcm.mvt.R | 4 R/mmcm.mvt.R | 3 R/mmcm.resamp.R | 5 - R/package.R | 3 R/print.mmcm.R | 5 - man/mcm.mvt.Rd | 175 +++++++++++++++++++++------------------- man/mmcm-package.Rd | 55 ++++-------- man/mmcm.mvt.Rd | 190 +++++++++++++++++++++++-------------------- man/mmcm.resamp.Rd | 226 ++++++++++++++++++++++++++-------------------------- man/print.mmcm.Rd | 34 ++----- 14 files changed, 379 insertions(+), 381 deletions(-)
Title: Active set and generalized PAVA for isotone optimization
Description: Contains two main functions: gpava() for
solving general isotone regression problem using the
pool-adjacent-violators algorithm (PAVA). activeSet() provides
a framework of active set methods for isotone optimization
problems with arbitrary order restrictions. Various types of
loss functions are pre-specified.
Author: Patrick Mair [aut, cre], Jan De Leeuw [aut], Kurt Hornik [aut]
Maintainer: Patrick Mair
Diff between isotone versions 1.0-1 dated 2011-01-23 and 1.0-2 dated 2014-09-10
isotone-1.0-1/isotone/COPYRIGHTS |only isotone-1.0-1/isotone/inst/doc/block.pdf |only isotone-1.0-1/isotone/inst/doc/isotone.Rnw |only isotone-1.0-1/isotone/inst/doc/isotone.bib |only isotone-1.0-1/isotone/inst/doc/isotone.pdf |only isotone-1.0-1/isotone/inst/doc/jss.bst |only isotone-1.0-1/isotone/inst/doc/jss.cls |only isotone-1.0-1/isotone/inst/doc/loop.pdf |only isotone-1.0-1/isotone/inst/doc/total.pdf |only isotone-1.0-1/isotone/inst/doc/tree.pdf |only isotone-1.0-2/isotone/DESCRIPTION | 24 +- isotone-1.0-2/isotone/MD5 |only isotone-1.0-2/isotone/inst/COPYRIGHTS |only isotone-1.0-2/isotone/inst/doc/vignettes |only isotone-1.0-2/isotone/man/activeSet.Rd | 269 ++++++++++++++--------------- isotone-1.0-2/isotone/man/fSolver.Rd | 81 ++++---- 16 files changed, 192 insertions(+), 182 deletions(-)
Title: HTML Writer - Outputs R objects in HTML format
Description: Easy-to-use and versatile functions to output R objects in
HTML format
Author: Gregoire Pau
Maintainer: Gregoire Pau
Diff between hwriter versions 1.3.1 dated 2014-08-23 and 1.3.2 dated 2014-09-10
DESCRIPTION | 13 +++++-------- MD5 | 2 +- 2 files changed, 6 insertions(+), 9 deletions(-)
Title: Dunn's test of multiple comparisons using rank sums
Description: dunn.test computes Dunn's test (1964) for stochastic dominance and reports the results among multiple pairwise comparisons after a Kruskal-Wallis test for stochastic dominance among k groups (Kruskal and Wallis, 1952). The interpretation of stochastic dominance requires an assumption that the CDF of one group does not cross the CDF of the other. dunn.test makes k(k-1)/2 multiple pairwise comparisons based on Dunn's z-test-statistic approximations to the actual rank statistics. The null hypothesis for each pairwise comparison is that the probability of observing a randomly selected value from the first group that is larger than a randomly selected value from the second group equals one half; this null hypothesis corresponds to that of the Wilcoxon-Mann-Whitney rank-sum test. Like the rank-sum test, if the data can be assumed to be continuous, and the distributions are assumed identical except for a difference in location, Dunn's test may be understood as a test for median difference. dunn.test accounts for tied ranks.
Author: Alexis Dinno
Maintainer: Alexis Dinno
Diff between dunn.test versions 1.1.0 dated 2014-08-24 and 1.2.0 dated 2014-09-10
DESCRIPTION | 8 - MD5 | 6 - R/dunn.test.R | 233 ++++++++++++++++++++++++++++++++++--------------------- man/dunn.test.Rd | 77 ++++++++++++------ 4 files changed, 204 insertions(+), 120 deletions(-)