Title: Estimating birth and death rates based on phylogenies
Diff between TreePar versions 3.0 dated 2014-07-28 and 3.1 dated 2014-09-23
Description: (i) For a given species phylogeny on present day data which is calibrated to calendar-time, a method for estimating maximum likelihood speciation and extinction processes is provided. The method allows for non-constant rates. Rates may change (1) as a function of time, i.e. rate shifts at specified times or mass extinction events (likelihood implemented as LikShifts, optimization as bd.shifts.optim and visualized as bd.shifts.plot) or (2) as a function of the number of species, i.e. density-dependence (likelihood implemented as LikDD and optimization as bd.densdep.optim). Note that the methods take into account the whole phylogeny, in particular it accounts for the "pull of the present" effect. Both (1) and (2) can take into account incomplete species sampling, as long as each species has the same probability of being sampled. For a given phylogeny on higher taxa (i.e. all but one species per taxa are missing), where the number of species is known within each higher taxa, speciation and extinction rates can be estimated under model (1) (implemented within LikShifts and bd.shifts.optim with groups !=0). (ii) For a given phylogeny with sequentially sampled tips, e.g. a virus phylogeny, rates can be estimated under a model where rates vary across time using bdsky.stt.optim based on likelihood LikShiftsSTT (extending LikShifts and bd.shifts.optim). Furthermore, rates may vary as a function of host types using LikTypesSTT (multitype branching process extending functions in R package diversitree). This function can furthermore calculate the likelihood under an epidemiological model where infected individuals are first exposed and then infectious.
Author: Tanja Stadler
Maintainer: Tanja Stadler
DESCRIPTION | 12 ++++----
MD5 | 14 ++++-----
R/BDSSnum.help.R | 69 ++++++++++++++++++++++++++++++++++++-------------
R/LikTypesSTT.R | 4 +-
R/integrator.R | 9 ++++++
R/integrator2.R | 5 +++
man/LikTypesSTT.Rd | 42 ++++++++++++++++++++++++++---
man/TreePar-package.Rd | 6 ++--
8 files changed, 121 insertions(+), 40 deletions(-)
Title: A server-side file system viewer for shiny
Diff between shinyFiles versions 0.3.2 dated 2014-06-15 and 0.4.0 dated 2014-09-23
Description: Provides functionality for client-side navigation of
the server side file system in shiny apps. In case the app is running
locally this gives the user direct access to the file system without the
need to "download" files to a temporary location.
Author: Thomas Lin Pedersen
Maintainer: Thomas Lin Pedersen
DESCRIPTION | 10 ++--
MD5 | 24 +++++-----
NAMESPACE | 10 ++--
R/filechoose.R | 63 ++++++++++++++++++----------
README.md | 11 +---
inst/example/server.R | 4 -
inst/www/shinyFiles.js | 104 +++++++++--------------------------------------
man/fileGetter.Rd | 2
man/getVolumes.Rd | 2
man/parseFilePaths.Rd | 6 +-
man/shinyFileChoose.Rd | 42 ++++++++++++------
man/shinyFilesButton.Rd | 6 +-
man/shinyFilesExample.Rd | 2
13 files changed, 127 insertions(+), 159 deletions(-)
Title: Regular Expression Removal, Extraction, and Replacement Tools
Diff between qdapRegex versions 0.1.1 dated 2014-09-20 and 0.1.2 dated 2014-09-23
Description: A collection of regular expression tools associated with the qdap
package that may be useful outside of the context of discourse analysis.
Tools include removal/extraction/replacement of abbreviations, dates, dollar
amounts, email addresses, hash tags, numbers, percentages, person tags,
phone numbers, times, and zip codes.
Author: Jason Gray [ctb],
Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker
DESCRIPTION | 24 ++++++++++++------------
MD5 | 13 ++++++++-----
NAMESPACE | 1 +
NEWS | 18 ++++++++++++++++++
R/bind.R |only
README.md | 2 +-
inst/CITATION | 8 ++++----
man/bind.Rd |only
tests/testthat/test-bind.R |only
9 files changed, 44 insertions(+), 22 deletions(-)
Title: Recognize and Parse Dates in Various Formats, Including All ISO
8601 Formats
Diff between parsedate versions 1.0.3 dated 2014-08-30 and 1.1.1 dated 2014-09-23
Description: Parse dates automatically, without the need of
specifying a format. Currently it includes the git date parser.
It can also recognize and parse all ISO 8601 formats.
Author: Gabor Csardi, Linus Torvalds
Maintainer: Gabor Csardi
DESCRIPTION | 11 ++--
MD5 | 14 ++---
NAMESPACE | 11 ----
R/parsedate-package.r | 60 +++++++++++++-----------
README.md | 12 ++--
src/date.c | 115 ++++++++++++++++++++++++++++++++++++++++++----
tests/testthat.R | 2
tests/testthat/test-git.r | 47 ++++++++++++++++++
8 files changed, 207 insertions(+), 65 deletions(-)
Title: Least-Squares Means
Diff between lsmeans versions 2.11 dated 2014-07-31 and 2.12 dated 2014-09-23
Description: This package provides methods for obtaining least-squares means for various linear models. It can also compute contrasts or linear combinations of these least-squares means, comparisons of slopes, plots, and compact letter displays.
Author: Russell V. Lenth
Maintainer: Russ Lenth
lsmeans-2.11/lsmeans/R/KRstuff.R |only
lsmeans-2.12/lsmeans/DESCRIPTION | 16 -
lsmeans-2.12/lsmeans/MD5 | 65 ++---
lsmeans-2.12/lsmeans/NAMESPACE | 16 -
lsmeans-2.12/lsmeans/R/aovlist-support.R | 2
lsmeans-2.12/lsmeans/R/helpers.R | 251 +++++++++++++++++-----
lsmeans-2.12/lsmeans/R/lsmeans.R | 86 ++++++-
lsmeans-2.12/lsmeans/R/lsmip.R | 10
lsmeans-2.12/lsmeans/R/old-lsmeans.R | 14 -
lsmeans-2.12/lsmeans/R/plot.lsm.R |only
lsmeans-2.12/lsmeans/R/ref.grid.R | 40 ++-
lsmeans-2.12/lsmeans/build/vignette.rds |binary
lsmeans-2.12/lsmeans/data/autonoise.RData |binary
lsmeans-2.12/lsmeans/inst/NEWS | 23 ++
lsmeans-2.12/lsmeans/inst/doc/extending.R | 4
lsmeans-2.12/lsmeans/inst/doc/extending.pdf |binary
lsmeans-2.12/lsmeans/inst/doc/extending.rnw | 6
lsmeans-2.12/lsmeans/inst/doc/lsmeans-changes.pdf |binary
lsmeans-2.12/lsmeans/inst/doc/using-lsmeans.R | 146 +++++++-----
lsmeans-2.12/lsmeans/inst/doc/using-lsmeans.pdf |binary
lsmeans-2.12/lsmeans/inst/doc/using-lsmeans.rnw | 163 ++++++++++----
lsmeans-2.12/lsmeans/man/auto.noise.Rd | 7
lsmeans-2.12/lsmeans/man/contrast.Rd | 24 +-
lsmeans-2.12/lsmeans/man/extending.Rd | 14 -
lsmeans-2.12/lsmeans/man/lsmeans-package.Rd | 49 +++-
lsmeans-2.12/lsmeans/man/lsmeans.Rd | 36 ++-
lsmeans-2.12/lsmeans/man/models.Rd |only
lsmeans-2.12/lsmeans/man/ref.grid.Rd | 7
lsmeans-2.12/lsmeans/man/summary.Rd | 33 ++
lsmeans-2.12/lsmeans/man/update.Rd | 3
lsmeans-2.12/lsmeans/tests/tests1.R | 13 +
lsmeans-2.12/lsmeans/tests/tests1.Rout.save | 29 ++
lsmeans-2.12/lsmeans/vignettes/extending.rnw | 6
lsmeans-2.12/lsmeans/vignettes/lsmeans.bib | 8
lsmeans-2.12/lsmeans/vignettes/using-lsmeans.rnw | 163 ++++++++++----
35 files changed, 906 insertions(+), 328 deletions(-)
Title: Statistical functions for the Delaporte distribution
Diff between Delaporte versions 2.2-0 dated 2014-07-16 and 2.2-1 dated 2014-09-23
Description: Provides probability mass, distribution, quantile, random variate generation, and method of moments parameter estimation functions for the Delaporte distribution.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler
DESCRIPTION | 8 ++++----
MD5 | 14 +++++++-------
R/Delaporte.R | 2 +-
inst/NEWS.Rd | 8 ++++++++
man/Delaporte-package.Rd | 4 ++--
man/Delaporte.Rd | 4 ++--
src/Delaporte.cpp | 13 ++++++++-----
tests/testthat/test-delap.r | 2 ++
8 files changed, 34 insertions(+), 21 deletions(-)
Title: Semiparametic Regression
Diff between SemiPar versions 1.0-4 dated 2013-03-23 and 1.0-4.1 dated 2014-09-23
Description: Functions for semiparametric regression analysis, to
complement the book: Ruppert, D., Wand, M.P. and Carroll, R.J.
(2003). Semiparametric Regression. Cambridge University Press.
Author: Matt Wand
Maintainer: Billy Aung Myint
DESCRIPTION | 13
MD5 | 4
R/spm.r | 1233 +++++++++++++++++++++++++++++++-----------------------------
3 files changed, 645 insertions(+), 605 deletions(-)
Title: Regularized Linear Models
Diff between mpath versions 0.1-14 dated 2014-09-22 and 0.1-15 dated 2014-09-23
Description: Algorithms for fitting model-based penalized coefficient paths. Currently the models include penalized Poisson, negative binomial, zero-inflated Poisson and zero-inflated negative binomial regression models. The penalties include least absolute shrinkage and selection operator (LASSO), smoothly clipped absolute deviation (SCAD) and minimax concave penalty (MCP), and each possibly combining with L_2 penalty.
Author: Zhu Wang, with contributions from Achim Zeileis, Simon Jackman, Brian Ripley, Trevor Hastie, Rob Tibshirani, Balasubramanian Narasimhan, Gil Chu and Patrick Breheny
Maintainer: Zhu Wang
DESCRIPTION | 6 +++---
MD5 | 7 ++++---
NEWS | 6 ++++++
src/cfuns.c |only
src/midloop.f | 14 +++++++++-----
5 files changed, 22 insertions(+), 11 deletions(-)
Title: Tools for checking data consistency
Diff between datacheck versions 1.0.0 dated 2013-10-21 and 1.0.4 dated 2014-09-23
Description: The package provides functionality to check variables against a
set of basic rules. A rule file can be accompanied by look-up tables. In
addition, the package provides some convenience testing functions that may
serve also as an example for defining clearer 'data rules' or tests. An
HTML based user interface facilitates initial exploration of the
functionality.
Author: Reinhard Simon
Maintainer: "Simon, Reinhard (CIP)"
datacheck-1.0.0/datacheck/inst/tests |only
datacheck-1.0.0/datacheck/tests |only
datacheck-1.0.4/datacheck/DESCRIPTION | 15
datacheck-1.0.4/datacheck/MD5 | 86
datacheck-1.0.4/datacheck/NAMESPACE | 38
datacheck-1.0.4/datacheck/NEWS | 6
datacheck-1.0.4/datacheck/R/datacheck.R | 14
datacheck-1.0.4/datacheck/build/vignette.rds |binary
datacheck-1.0.4/datacheck/inst/doc/index.R | 18
datacheck-1.0.4/datacheck/inst/doc/index.Rmd | 3
datacheck-1.0.4/datacheck/inst/doc/index.html | 2871 +++++++++++--
datacheck-1.0.4/datacheck/inst/examples/datadict_profile.R | 58
datacheck-1.0.4/datacheck/inst/examples/has_punct.R | 4
datacheck-1.0.4/datacheck/inst/examples/has_ruleErrors.R | 24
datacheck-1.0.4/datacheck/inst/examples/is_oneOf.R | 68
datacheck-1.0.4/datacheck/inst/examples/is_onlyLowers.R | 10
datacheck-1.0.4/datacheck/inst/examples/is_properName.R | 14
datacheck-1.0.4/datacheck/inst/examples/is_withinRange.R | 6
datacheck-1.0.4/datacheck/inst/examples/person.csv | 22
datacheck-1.0.4/datacheck/inst/examples/person_rules.R | 26
datacheck-1.0.4/datacheck/inst/examples/rules.R | 32
datacheck-1.0.4/datacheck/inst/examples/rules1.R | 26
datacheck-1.0.4/datacheck/inst/examples/rules2.R | 8
datacheck-1.0.4/datacheck/inst/examples/soil_rules.R | 112
datacheck-1.0.4/datacheck/inst/www/server.R | 2
datacheck-1.0.4/datacheck/inst/www/ui.R | 2
datacheck-1.0.4/datacheck/man/as.rules.Rd | 30
datacheck-1.0.4/datacheck/man/datacheck-package.Rd | 61
datacheck-1.0.4/datacheck/man/datadict.profile.Rd | 44
datacheck-1.0.4/datacheck/man/has.punct.Rd | 15
datacheck-1.0.4/datacheck/man/has.ruleErrors.Rd | 19
datacheck-1.0.4/datacheck/man/heatmap.quality.Rd | 30
datacheck-1.0.4/datacheck/man/is.datadict.profile.Rd | 17
datacheck-1.0.4/datacheck/man/is.oneOf.Rd | 43
datacheck-1.0.4/datacheck/man/is.onlyLowers.Rd | 15
datacheck-1.0.4/datacheck/man/is.properName.Rd | 16
datacheck-1.0.4/datacheck/man/is.withinRange.Rd | 20
datacheck-1.0.4/datacheck/man/pkg.version.Rd | 13
datacheck-1.0.4/datacheck/man/prep4rep.Rd | 23
datacheck-1.0.4/datacheck/man/read.rules.Rd | 30
datacheck-1.0.4/datacheck/man/ruleCoverage.Rd | 23
datacheck-1.0.4/datacheck/man/runDatacheck.Rd | 9
datacheck-1.0.4/datacheck/man/scoreSum.Rd | 14
datacheck-1.0.4/datacheck/man/shortSummary.Rd | 11
datacheck-1.0.4/datacheck/vignettes/index.Rmd | 4
45 files changed, 2947 insertions(+), 955 deletions(-)
Title: Manipulations of triangular meshes (smoothing, quadric edge
collapse decimation, im- and export of various mesh
file-formats, cleaning, etc.) based on the VCGLIB API.
Diff between Rvcg versions 0.8 dated 2014-06-05 and 0.9 dated 2014-09-23
Description: Operations on triangular meshes based on VCGLIB. This package
integrates nicely with the R-package "rgl" to render the meshes processed
by Rvcg. The Visualization and Computer Graphics Library (VCG for short) is
an open source portable C++ templated library for manipulation, processing
and displaying with OpenGL of triangle and tetrahedral meshes. The library,
composed by more than 100k lines of code, is released under the GPL
license, and it is the base of most of the software tools of the Visual
Computing Lab of the Italian National Research Council Institute ISTI
(http://vcg.isti.cnr.it), like metro and MeshLab.
The vcglib source is pulled from
trunk (svn://svn.code.sf.net/p/vcg/code/trunk/vcglib) and patched to work
with options determined by the configure script as well as
to work with the header files included by RcppEigen.
Author: Stefan Schlager; the authors of VCGLIB for the included version of the
code
Maintainer: Stefan Schlager
Rvcg-0.8/Rvcg/src/Makevars.in.save |only
Rvcg-0.8/Rvcg/src/vcglib/vcg/complex/algorithms/voronoi_clustering.h |only
Rvcg-0.9/Rvcg/DESCRIPTION | 8
Rvcg-0.9/Rvcg/MD5 | 238 -
Rvcg-0.9/Rvcg/NAMESPACE | 1
Rvcg-0.9/Rvcg/R/Rvcg-package.R | 4
Rvcg-0.9/Rvcg/R/meshintegrity.r |only
Rvcg-0.9/Rvcg/R/vcgBary.r | 7
Rvcg-0.9/Rvcg/R/vcgBorder.r | 13
Rvcg-0.9/Rvcg/R/vcgClean.r | 8
Rvcg-0.9/Rvcg/R/vcgClost.r | 10
Rvcg-0.9/Rvcg/R/vcgClostKD.r | 9
Rvcg-0.9/Rvcg/R/vcgCurve.r | 8
Rvcg-0.9/Rvcg/R/vcgGetEdge.r | 5
Rvcg-0.9/Rvcg/R/vcgImport.r | 22
Rvcg-0.9/Rvcg/R/vcgIsolated.r | 10
Rvcg-0.9/Rvcg/R/vcgKDtree.r | 5
Rvcg-0.9/Rvcg/R/vcgMeshres.r | 5
Rvcg-0.9/Rvcg/R/vcgQEdecim.r | 10
Rvcg-0.9/Rvcg/R/vcgRaySearch.r | 14
Rvcg-0.9/Rvcg/R/vcgSample.r | 6
Rvcg-0.9/Rvcg/R/vcgSmooth.r | 3
Rvcg-0.9/Rvcg/R/vcgUpdateNormals.r | 6
Rvcg-0.9/Rvcg/R/vcgVFadj.r | 5
Rvcg-0.9/Rvcg/man/Rvcg-package.Rd | 4
Rvcg-0.9/Rvcg/man/meshintegrity.Rd |only
Rvcg-0.9/Rvcg/man/vcgImport.Rd | 5
Rvcg-0.9/Rvcg/man/vcgIsolated.Rd | 4
Rvcg-0.9/Rvcg/man/vcgQEdecim.Rd | 4
Rvcg-0.9/Rvcg/man/vcgUpdateNormals.Rd | 4
Rvcg-0.9/Rvcg/src/RQEdecim.cpp | 192 -
Rvcg-0.9/Rvcg/src/RallRead.cpp | 233 -
Rvcg-0.9/Rvcg/src/Rclean.cpp | 16
Rvcg-0.9/Rvcg/src/Rclost.cpp | 236 -
Rvcg-0.9/Rvcg/src/Rcurvature.cpp | 140
Rvcg-0.9/Rvcg/src/RgetEdge.cpp | 131
Rvcg-0.9/Rvcg/src/Rintersect.cpp | 248 -
Rvcg-0.9/Rvcg/src/Risolated.cpp | 200 -
Rvcg-0.9/Rvcg/src/Rkdtree.cpp | 257 -
Rvcg-0.9/Rvcg/src/Rmarch.cpp | 17
Rvcg-0.9/Rvcg/src/Rmeshres.cpp | 11
Rvcg-0.9/Rvcg/src/Rsample.cpp | 103
Rvcg-0.9/Rvcg/src/Rsmooth.cpp | 136
Rvcg-0.9/Rvcg/src/RupdateNormals.cpp | 90
Rvcg-0.9/Rvcg/src/Volume.h |only
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/autoalign_4pcs.h | 940 +++---
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/bitquad_optimization.h | 102
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/bitquad_support.h | 15
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/clean.h | 75
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/closest.h | 745 ++---
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/create/advancing_front.h | 1
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/create/emc_lookup_table.h | 4
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/create/extended_marching_cubes.h | 4
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/create/marching_cubes.h | 30
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/create/mc_lookup_table.h | 4
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/create/mc_trivial_walker.h | 429 +-
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/create/platonic.h | 180 -
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/harmonic.h |only
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/hole.h | 1039 +++----
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/parametrization/poisson_solver.h | 9
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/parametrization/poisson_solver.h.rej |only
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/parametrization/tangent_field_operators.h | 212 +
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/parametrization/voronoi_atlas.h | 24
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/point_sampling.h | 553 ++-
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/polygon_polychord_collapse.h |only
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/polygon_support.h | 338 +-
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/refine.h | 145 -
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/smooth.h | 1336 ++++-----
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/stat.h | 19
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/symmetry.h |only
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/update/curvature.h | 363 +-
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/update/curvature.h.rej |only
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/update/normal.h | 204 -
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/update/selection.h | 202 -
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/update/topology.h | 224 -
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/voronoi_processing.h |only
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/algorithms/voronoi_volume_sampling.h |only
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/allocate.h | 89
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/append.h | 90
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/base.h | 41
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/complex.h | 1
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/exception.h | 31
Rvcg-0.9/Rvcg/src/vcglib/vcg/complex/used_types.h | 2
Rvcg-0.9/Rvcg/src/vcglib/vcg/math/camera.h | 2
Rvcg-0.9/Rvcg/src/vcglib/vcg/math/histogram.h | 575 +--
Rvcg-0.9/Rvcg/src/vcglib/vcg/math/matrix44.h | 800 ++---
Rvcg-0.9/Rvcg/src/vcglib/vcg/math/perlin_noise.h | 2
Rvcg-0.9/Rvcg/src/vcglib/vcg/math/random_generator.h | 474 +--
Rvcg-0.9/Rvcg/src/vcglib/vcg/simplex/face/component.h | 29
Rvcg-0.9/Rvcg/src/vcglib/vcg/simplex/face/component_ocf.h | 102
Rvcg-0.9/Rvcg/src/vcglib/vcg/simplex/face/component_polygon.h | 379 +-
Rvcg-0.9/Rvcg/src/vcglib/vcg/simplex/face/pos.h | 5
Rvcg-0.9/Rvcg/src/vcglib/vcg/simplex/face/topology.h | 30
Rvcg-0.9/Rvcg/src/vcglib/vcg/space/deprecated_point3.h | 668 ++--
Rvcg-0.9/Rvcg/src/vcglib/vcg/space/distance3.h | 35
Rvcg-0.9/Rvcg/src/vcglib/vcg/space/fitting3.h | 22
Rvcg-0.9/Rvcg/src/vcglib/vcg/space/index/grid_util.h | 448 +--
Rvcg-0.9/Rvcg/src/vcglib/vcg/space/index/grid_util.h.rej |only
Rvcg-0.9/Rvcg/src/vcglib/vcg/space/index/index2D/spatial_hashing_2D.h | 682 ++--
Rvcg-0.9/Rvcg/src/vcglib/vcg/space/index/kdtree/kdtree.h | 131
Rvcg-0.9/Rvcg/src/vcglib/vcg/space/index/kdtree/kdtree.h.rej |only
Rvcg-0.9/Rvcg/src/vcglib/vcg/space/index/kdtree/priorityqueue.h | 4
Rvcg-0.9/Rvcg/src/vcglib/vcg/space/index/octree.h | 1446 ++++------
Rvcg-0.9/Rvcg/src/vcglib/vcg/space/intersection3.h | 734 ++---
Rvcg-0.9/Rvcg/src/vcglib/vcg/space/plane3.h | 9
Rvcg-0.9/Rvcg/src/vcglib/vcg/space/texcoord2.h | 218 -
Rvcg-0.9/Rvcg/src/vcglib/wrap/gl/gl_field.h | 134
Rvcg-0.9/Rvcg/src/vcglib/wrap/gl/pick.h | 725 ++---
Rvcg-0.9/Rvcg/src/vcglib/wrap/io_trimesh/export_off.h | 154 -
Rvcg-0.9/Rvcg/src/vcglib/wrap/io_trimesh/export_ply.h | 1113 +++----
Rvcg-0.9/Rvcg/src/vcglib/wrap/io_trimesh/export_vmi.h | 481 +--
Rvcg-0.9/Rvcg/src/vcglib/wrap/io_trimesh/import_obj.h | 63
Rvcg-0.9/Rvcg/src/vcglib/wrap/io_trimesh/import_off.h | 1407 ++++-----
Rvcg-0.9/Rvcg/src/vcglib/wrap/io_trimesh/import_out.h | 17
Rvcg-0.9/Rvcg/src/vcglib/wrap/io_trimesh/import_vmi.h | 3
Rvcg-0.9/Rvcg/src/vcglib/wrap/miq/core/seams_initializer.h | 13
Rvcg-0.9/Rvcg/src/vcglib/wrap/ply/plylib.cpp | 2
Rvcg-0.9/Rvcg/src/vcglib/wrap/qt/anttweakbarMapper.cpp | 21
Rvcg-0.9/Rvcg/src/vcglib/wrap/qt/anttweakbarMapper.h | 6
Rvcg-0.9/Rvcg/src/vcglib/wrap/qt/anttweakbarMapperNew.cpp | 25
Rvcg-0.9/Rvcg/src/vcglib/wrap/qt/checkGLError.h | 56
Rvcg-0.9/Rvcg/src/vcglib/wrap/qt/device_to_logical.h | 13
Rvcg-0.9/Rvcg/src/vcglib/wrap/system/multithreading/mt.h | 2
Rvcg-0.9/Rvcg/src/vcglib/wrap/system/multithreading/mutex.h | 57
Rvcg-0.9/Rvcg/src/vcglib/wrap/system/multithreading/thread.h | 1
Rvcg-0.9/Rvcg/src/vcglib/wrap/system/qgetopt.cpp | 105
Rvcg-0.9/Rvcg/src/vcglib/wrap/system/qgetopt.h | 11
127 files changed, 10740 insertions(+), 10343 deletions(-)
Title: Graph estimation based on birth-death MCMC approach
Diff between BDgraph versions 2.10 dated 2014-07-11 and 2.11 dated 2014-09-23
Description: This package provides a Bayesian methodology for structure learning in undirected graphical models. Our Bayesian methodology is based on birth-death Markov chain Monte Carlo (BDMCMC) algorithm which is the main function with the name 'bdgraph'. The main target of this package is high-dimensional data analysis wherein usually p >> n. The computation is memory-optimized using the sparse matrix output.
Author: Abdolreza Mohammadi and Ernst Wit
Maintainer: Abdolreza Mohammadi
DESCRIPTION | 6
MD5 | 17 -
R/BDgraph.R | 286 ++++++++++++++++---
data/surveyData.RData |binary
man/BDgraph-internal.Rd | 1
man/BDgraph-package.Rd | 1
man/bdgraph.Rd | 17 -
man/plotcoda.Rd | 2
man/plotroc.Rd |only
src/bdmcmc.cpp | 692 +++++++++++++++++++++++++++++++++++-------------
10 files changed, 769 insertions(+), 253 deletions(-)
Title: An R package to interact with the Project Vote Smart API for
scientific research
Diff between pvsR versions 0.2 dated 2014-08-05 and 0.3 dated 2014-09-23
Description: The pvsR package facilitates data retrieval from Project
Vote Smart's rich online data base on US politics via the Project Vote
Smart application programming interface (PVS API). The functions in this
package cover most PVS API classes and methods and return the
requested data in a data frame.
Author: Ulrich Matter
Maintainer: Ulrich Matter
DESCRIPTION | 8 +-
MD5 | 17 +++--
NAMESPACE | 3
NEWS | 14 ++++
R/CandidateBio.getDetailedBio.R |only
R/Votes.getBillAction.R | 121 ++++++++++++++++++-------------------
R/dfList.R | 19 +++++
R/getAllVotes.R |only
R/pvsRequestDetailedBio.R |only
R/pvsrRequest10.R | 2
man/CandidateBio.getDetailedBio.Rd |only
man/getAllVotes.Rd |only
12 files changed, 110 insertions(+), 74 deletions(-)
Title: A data analysis tool for in vitro-in vivo correlation (IVIVC)
Diff between ivivc versions 0.2.0 dated 2014-05-21 and 0.2.1 dated 2014-09-23
Description: a menu-driven package for IVIVC model building, data analysis and
model validation (only internal validation) based on Wagner-Nelson
Method (only for the one-compartment PK model) for Level A correlation
Author: Hsin-ya Lee, Yung-jin Lee
Maintainer: Yung-jin Lee
DESCRIPTION | 13 ++++++-------
MD5 | 12 ++++++------
NEWS | 5 +++++
R/description_version.r | 2 +-
R/ffirst.lag.R | 8 ++++----
R/logo_plot_desc.r | 2 +-
R/zzz.R | 2 +-
7 files changed, 24 insertions(+), 20 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-05-15 0.2.4
2014-03-05 0.2.3
2012-10-15 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-06-17 2.4.3.11
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-06-22 0.1-7
2010-04-12 0.1-6
2007-05-31 0.1-5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-03-12 0.6-1
2011-07-23 0.6
2011-06-30 0.5
2010-11-30 0.4-5
2010-02-15 0.4-4
2007-10-27 0.4-3
2007-05-18 0.4-2
Title: Spatial analysis of animal track data
Diff between trip versions 1.1-17 dated 2013-08-25 and 1.1-18 dated 2014-09-23
Description: Functions for accessing and manipulating spatial data for
animal tracking. Filter for speed and create time spent plots
from animal track data.
Author: Michael D. Sumner [aut, cre],
Sebastian Luque [ctb]
Maintainer: Michael D. Sumner
ChangeLog |only
DESCRIPTION | 12
MD5 | 84 -
NAMESPACE | 119 +-
NEWS | 447 ++++-----
R/AllClass.R | 314 +++---
R/AllMethod.R | 1100 +++++++++++-----------
R/as.trip.R |only
R/coerce.R | 393 +++-----
R/colours.R | 198 ++--
R/filter.R | 574 +++++------
R/grid.R | 698 +++++++-------
R/interpequal.R |only
R/speedDistanceAngle.R |only
R/trip-deprecated.R | 120 +-
R/trip.R | 1917 ++++++++++++++++++++--------------------
README.md | 116 +-
build |only
inst/doc/trip.R | 188 +--
inst/doc/trip.Rnw | 250 ++---
inst/doc/trip.pdf |binary
man/TimeOrderedRecords-class.Rd | 58 -
man/TimeOrderedRecords.Rd | 42
man/adjust.duplicateTimes.Rd | 92 -
man/argos.sigma.Rd | 81 -
man/as.Other.Rd | 129 +-
man/as.trip-methods.Rd | 82 -
man/cut.trip.Rd | 196 ++--
man/filter.penSS.Rd | 202 ++--
man/forceCompliance.Rd | 61 -
man/makeGridTopology.Rd | 73 -
man/oc.theme.Rd | 84 -
man/readArgos.Rd | 203 ++--
man/sda.Rd |only
man/sepIdGaps.Rd | 92 -
man/speedfilter.Rd | 136 +-
man/trackAngle.Rd | 63 -
man/trackDistance.Rd | 152 +--
man/trip-accessors.Rd | 86 -
man/trip-class.Rd | 119 +-
man/trip-internal.Rd | 88 -
man/trip-methods.Rd | 270 ++---
man/trip.split.exact.Rd | 82 -
man/tripGrid.Rd | 84 -
man/tripGrid.interp.Rd | 144 +--
vignettes/trip.Rnw | 250 ++---
46 files changed, 4644 insertions(+), 4755 deletions(-)
Title: Less Code, More Results
Diff between lessR versions 3.1 dated 2014-02-25 and 3.1.1 dated 2014-09-23
Description: Each function accomplishes the work of several or more standard R functions. For example, two function calls, Read() and CountAll(), read the data and generate descriptive statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for descriptive statistics, a comprehensive regression analysis, analysis of variance and t-test, plotting, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function and color themes. The function Help provides a help system that suggests specific analyses and functions. Variable labels are available. A confirmatory factor analysis of multiple indicator measurement models is also available as is a pedagogical routines for data simulation such as for the Central Limit Theorem.
Author: David W. Gerbing, School of Business Administration, Portland State University
Maintainer: David W. Gerbing
DESCRIPTION | 8 ++---
MD5 | 77 ++++++++++++++++++++++++++---------------------------
NEWS | 64 +++++++++++++++++++++++++++++++++++++-------
R/Histogram.R | 2 -
R/Model.R | 6 ++--
R/PieChart.R | 5 ++-
R/Read.R | 1
R/ScatterPlot.R | 2 -
R/Write.R | 13 ++++++++
R/corCFA.R | 30 +++++++++++++-------
R/den.zmain.R |only
R/label.R | 29 ++++++++++++++-----
R/pc.zmain.R | 5 ++-
R/set.R | 4 +-
R/tt.z1graph.R | 6 ++--
R/tt.z1group.R | 28 ++++++++++++++++---
R/tt.z2graph.R | 2 -
R/tt.z2group.R | 23 +++++++++++++++
R/tt.zformula.R | 4 ++
R/ttest.R | 44 +++++++++++++++---------------
R/zzz.R | 7 ++--
man/ANOVA.Rd | 5 +++
man/BarChart.Rd | 5 +++
man/BoxPlot.Rd | 4 ++
man/Correlation.Rd | 4 ++
man/Help.Rd | 14 ++++++---
man/Merge.Rd | 1
man/PieChart.Rd | 11 ++++---
man/Read.Rd | 5 ++-
man/Recode.Rd | 5 +--
man/Regression.Rd | 3 ++
man/ScatterPlot.Rd | 6 ++--
man/Subset.Rd | 4 --
man/Write.Rd | 2 -
man/corCFA.Rd | 2 +
man/corEFA.Rd | 2 +
man/corProp.Rd | 4 ++
man/corRead.Rd | 4 ++
man/corReflect.Rd | 2 -
man/ttest.Rd | 10 ++++--
40 files changed, 313 insertions(+), 140 deletions(-)
Title: The Hilbert-Huang Transform: Tools and Methods
Diff between hht versions 2.0.2 dated 2014-05-13 and 2.1.0 dated 2014-09-23
Description: This package builds on the EMD package to provide additional tools for empirical mode decomposition (EMD) and Hilbert spectral analysis. It also implements the ensemble empirical decomposition (EEMD) and the complete ensemble empirical mode decomposition (CEEMD) methods to avoid mode mixing and intermittency problems found in EMD analysis. The package comes with several plotting methods that can be used to view intrinsic mode functions, the HHT spectrum, and the Fourier spectrum. To see the version history and download the bleeding-edge version (at your own risk!), see the project website at code.google.com below. See the other links for PDF files describing numerical and exact analytical methods for determining instantaneous frequency, some examples of signals processed with this package, and some examples of the ensemble empirical mode decomposition method.
Author: Daniel C. Bowman [aut, cre],
Jonathan M. Lees [ctb]
Maintainer: Daniel C. Bowman
DESCRIPTION | 10 +-
MD5 | 7 +
NEWS | 3
R/empirical_mode_decomposition.R | 154 +++++++++++++++++++++++++++++++++++++++
man/CEEMD.Rd |only
5 files changed, 166 insertions(+), 8 deletions(-)
Title: Tools to make developing R code easier
Diff between devtools versions 1.5 dated 2014-04-07 and 1.6 dated 2014-09-23
Description: Collection of package development tools.
Author: Hadley Wickham [aut, cre],
Winston Chang [aut],
RStudio [cph],
R Core team [ctb] (Some namespace and vignette code extracted from base
R)
Maintainer: Hadley Wickham
devtools-1.5/devtools/R/build-ignore.R |only
devtools-1.5/devtools/R/parent-envs.r |only
devtools-1.5/devtools/R/rstudio.R |only
devtools-1.5/devtools/R/travis.R |only
devtools-1.5/devtools/man/add_build_ignore.Rd |only
devtools-1.5/devtools/man/add_rstudio_project.Rd |only
devtools-1.5/devtools/man/add_test_infrastructure.Rd |only
devtools-1.5/devtools/man/add_travis.Rd |only
devtools-1.5/devtools/man/as.envlist.Rd |only
devtools-1.5/devtools/man/git_path.Rd |only
devtools-1.5/devtools/man/install_git_single.Rd |only
devtools-1.5/devtools/man/parenvs.Rd |only
devtools-1.5/devtools/man/print.envlist.Rd |only
devtools-1.6/devtools/DESCRIPTION | 32
devtools-1.6/devtools/MD5 | 288 ++++----
devtools-1.6/devtools/NAMESPACE | 72 +-
devtools-1.6/devtools/R/R.r | 3
devtools-1.6/devtools/R/build-github-devtools.r | 15
devtools-1.6/devtools/R/build.r | 14
devtools-1.6/devtools/R/check-cran.r | 41 -
devtools-1.6/devtools/R/check-devtools.r | 39 -
devtools-1.6/devtools/R/check-doc.r | 5
devtools-1.6/devtools/R/check.r | 30
devtools-1.6/devtools/R/compile-dll.r | 5
devtools-1.6/devtools/R/cran.r | 2
devtools-1.6/devtools/R/create.r | 16
devtools-1.6/devtools/R/decompress.r | 55 +
devtools-1.6/devtools/R/dev-help.r | 134 ++-
devtools-1.6/devtools/R/dev-meta.r | 4
devtools-1.6/devtools/R/document.r | 47 -
devtools-1.6/devtools/R/git.R |only
devtools-1.6/devtools/R/github.R |only
devtools-1.6/devtools/R/has-devel.r | 13
devtools-1.6/devtools/R/infrastructure.R |only
devtools-1.6/devtools/R/install-bitbucket.r | 101 ++
devtools-1.6/devtools/R/install-git.r | 132 +--
devtools-1.6/devtools/R/install-github.r | 342 ++++------
devtools-1.6/devtools/R/install-gitorious.r | 68 +
devtools-1.6/devtools/R/install-local.r | 61 -
devtools-1.6/devtools/R/install-min.r | 2
devtools-1.6/devtools/R/install-remote.R |only
devtools-1.6/devtools/R/install-svn.r |only
devtools-1.6/devtools/R/install-url.r | 54 -
devtools-1.6/devtools/R/install.r | 13
devtools-1.6/devtools/R/load.r | 31
devtools-1.6/devtools/R/missing-s3.r | 16
devtools-1.6/devtools/R/namespace-env.r | 38 -
devtools-1.6/devtools/R/package.r | 9
devtools-1.6/devtools/R/rcpp-attributes.r | 4
devtools-1.6/devtools/R/release.r | 167 ++++
devtools-1.6/devtools/R/remove-s4-class.r | 2
devtools-1.6/devtools/R/reverse-dependencies.r | 16
devtools-1.6/devtools/R/rtools.r | 1
devtools-1.6/devtools/R/run-example.r | 26
devtools-1.6/devtools/R/run-examples.r | 14
devtools-1.6/devtools/R/run-source.r | 43 -
devtools-1.6/devtools/R/session-info.r | 157 ++++
devtools-1.6/devtools/R/shims.r | 53 +
devtools-1.6/devtools/R/test.r | 86 --
devtools-1.6/devtools/R/topic-index.r | 20
devtools-1.6/devtools/R/unload.r | 2
devtools-1.6/devtools/R/utils.r | 50 +
devtools-1.6/devtools/R/vignette-r.r | 3
devtools-1.6/devtools/R/vignettes.r | 11
devtools-1.6/devtools/R/with.r | 2
devtools-1.6/devtools/R/zzz.r | 15
devtools-1.6/devtools/README.md | 38 -
devtools-1.6/devtools/man/as.package.Rd | 2
devtools-1.6/devtools/man/bash.Rd | 2
devtools-1.6/devtools/man/build.Rd | 2
devtools-1.6/devtools/man/build_github_devtools.Rd | 5
devtools-1.6/devtools/man/build_vignettes.Rd | 2
devtools-1.6/devtools/man/build_win.Rd | 2
devtools-1.6/devtools/man/check.Rd | 23
devtools-1.6/devtools/man/check_cran.Rd | 9
devtools-1.6/devtools/man/check_dep_version.Rd | 2
devtools-1.6/devtools/man/check_doc.Rd | 2
devtools-1.6/devtools/man/clean_dll.Rd | 2
devtools-1.6/devtools/man/clean_source.Rd | 2
devtools-1.6/devtools/man/clean_vignettes.Rd | 2
devtools-1.6/devtools/man/compile_dll.Rd | 2
devtools-1.6/devtools/man/compiler_flags.Rd | 2
devtools-1.6/devtools/man/cran_env_vars.Rd | 2
devtools-1.6/devtools/man/create.Rd | 4
devtools-1.6/devtools/man/create_description.Rd | 2
devtools-1.6/devtools/man/dev_example.Rd | 2
devtools-1.6/devtools/man/dev_help.Rd | 2
devtools-1.6/devtools/man/dev_meta.Rd | 2
devtools-1.6/devtools/man/dev_mode.Rd | 2
devtools-1.6/devtools/man/dev_packages.Rd | 2
devtools-1.6/devtools/man/devtest.Rd | 2
devtools-1.6/devtools/man/devtools.Rd | 6
devtools-1.6/devtools/man/document.Rd | 29
devtools-1.6/devtools/man/eval_clean.Rd | 2
devtools-1.6/devtools/man/find_rtools.Rd | 2
devtools-1.6/devtools/man/find_topic.Rd |only
devtools-1.6/devtools/man/github_pat.Rd | 2
devtools-1.6/devtools/man/github_refs.Rd |only
devtools-1.6/devtools/man/has_devel.Rd | 2
devtools-1.6/devtools/man/has_tests.Rd | 2
devtools-1.6/devtools/man/help.Rd | 35 -
devtools-1.6/devtools/man/imports_env.Rd | 2
devtools-1.6/devtools/man/infrastructure.Rd |only
devtools-1.6/devtools/man/inst.Rd | 2
devtools-1.6/devtools/man/install.Rd | 8
devtools-1.6/devtools/man/install_bitbucket.Rd | 28
devtools-1.6/devtools/man/install_deps.Rd | 2
devtools-1.6/devtools/man/install_git.Rd | 29
devtools-1.6/devtools/man/install_github.Rd | 50 -
devtools-1.6/devtools/man/install_gitorious.Rd | 24
devtools-1.6/devtools/man/install_local.Rd | 4
devtools-1.6/devtools/man/install_svn.Rd |only
devtools-1.6/devtools/man/install_url.Rd | 22
devtools-1.6/devtools/man/install_version.Rd | 19
devtools-1.6/devtools/man/is.package.Rd | 2
devtools-1.6/devtools/man/load_all.Rd | 2
devtools-1.6/devtools/man/load_code.Rd | 2
devtools-1.6/devtools/man/load_data.Rd | 2
devtools-1.6/devtools/man/load_dll.Rd | 2
devtools-1.6/devtools/man/load_imports.Rd | 2
devtools-1.6/devtools/man/loaded_packages.Rd | 6
devtools-1.6/devtools/man/missing_s3.Rd | 2
devtools-1.6/devtools/man/ns_env.Rd | 2
devtools-1.6/devtools/man/on_path.Rd | 2
devtools-1.6/devtools/man/parse_deps.Rd | 2
devtools-1.6/devtools/man/parse_ns_file.Rd | 2
devtools-1.6/devtools/man/path.Rd | 2
devtools-1.6/devtools/man/pkg_env.Rd | 2
devtools-1.6/devtools/man/r_env_vars.Rd | 2
devtools-1.6/devtools/man/release.Rd | 9
devtools-1.6/devtools/man/reload.Rd | 2
devtools-1.6/devtools/man/revdep.Rd | 14
devtools-1.6/devtools/man/run_examples.Rd | 2
devtools-1.6/devtools/man/run_pkg_hook.Rd | 2
devtools-1.6/devtools/man/session_info.Rd |only
devtools-1.6/devtools/man/show_news.Rd | 2
devtools-1.6/devtools/man/source_gist.Rd | 2
devtools-1.6/devtools/man/source_url.Rd | 2
devtools-1.6/devtools/man/submit_cran.Rd |only
devtools-1.6/devtools/man/system.file.Rd | 8
devtools-1.6/devtools/man/test.Rd | 22
devtools-1.6/devtools/man/unload.Rd | 2
devtools-1.6/devtools/man/use_build_ignore.Rd |only
devtools-1.6/devtools/man/use_data.Rd |only
devtools-1.6/devtools/man/use_data_raw.Rd |only
devtools-1.6/devtools/man/use_package.Rd |only
devtools-1.6/devtools/man/wd.Rd | 2
devtools-1.6/devtools/man/with_debug.Rd | 8
devtools-1.6/devtools/man/with_something.Rd | 2
devtools-1.6/devtools/tests/testthat/test-getrootdir.R |only
devtools-1.6/devtools/tests/testthat/test-github.r | 97 +-
devtools-1.6/devtools/tests/testthat/test-help.r | 41 -
devtools-1.6/devtools/tests/testthat/test-imports.r | 33
devtools-1.6/devtools/tests/testthat/test-namespace.r | 37 -
devtools-1.6/devtools/tests/testthat/test-shim.r | 15
devtools-1.6/devtools/tests/testthat/test-vignettes.r | 13
devtools-1.6/devtools/tests/testthat/testMissingNsObject |only
devtools-1.6/devtools/tests/testthat/testNamespace/DESCRIPTION | 2
devtools-1.6/devtools/tests/testthat/testNamespace/NAMESPACE | 4
159 files changed, 1824 insertions(+), 1274 deletions(-)
Title: Model-Based Clustering of Categorical Sequences
Diff between ClickClust versions 0.1.1 dated 2014-04-28 and 1.1.2 dated 2014-09-23
Description: ClickClust allows clustering categorical sequences by means of finite mixtures with Markov model components. ClickClust also allows detecting blocks of equivalent states by forward and backward state selection procedures.
Author: Volodymyr Melnykov [aut, cre]
Maintainer: Volodymyr Melnykov
ClickClust-0.1.1/ClickClust/demo/sec3.5_ex2.R |only
ClickClust-1.1.2/ClickClust/DESCRIPTION | 8
ClickClust-1.1.2/ClickClust/MD5 | 42 +--
ClickClust-1.1.2/ClickClust/NAMESPACE | 1
ClickClust-1.1.2/ClickClust/NEWS | 5
ClickClust-1.1.2/ClickClust/R/libClickClust.R | 232 ++++++++++++++----
ClickClust-1.1.2/ClickClust/R/main.R | 2
ClickClust-1.1.2/ClickClust/R/zzz.R | 1
ClickClust-1.1.2/ClickClust/demo/00Index | 3
ClickClust-1.1.2/ClickClust/demo/sec3.5_ex1.R | 6
ClickClust-1.1.2/ClickClust/demo/sec3.6_ex1.R |only
ClickClust-1.1.2/ClickClust/demo/sec3.6_ex2.R |only
ClickClust-1.1.2/ClickClust/man/BackwardSearch.Rd | 9
ClickClust-1.1.2/ClickClust/man/ClickClust-package.Rd | 2
ClickClust-1.1.2/ClickClust/man/ClickClust.Rd | 7
ClickClust-1.1.2/ClickClust/man/ClickPlot.Rd | 2
ClickClust-1.1.2/ClickClust/man/ForwardSearch.Rd | 8
ClickClust-1.1.2/ClickClust/man/Predict.Rd |only
ClickClust-1.1.2/ClickClust/man/ReadData.Rd | 2
ClickClust-1.1.2/ClickClust/man/SimData.Rd | 2
ClickClust-1.1.2/ClickClust/man/VarEst.Rd | 2
ClickClust-1.1.2/ClickClust/src/ClickClust.h | 6
ClickClust-1.1.2/ClickClust/src/libEM.c | 17 -
ClickClust-1.1.2/ClickClust/src/libOther.c | 12
24 files changed, 258 insertions(+), 111 deletions(-)