Title: R Interface to the Pushbullet Messaging Service
Diff between RPushbullet versions 0.0.2 dated 2014-06-03 and 0.1.0 dated 2014-10-10
Description: This package provides an easy-to-use interface for the
Pushbullet messaging service which provides fast and efficient notifications
between computers, phones and tablets. An account has to be registered at
the site http://www.pushbullet.com site to obtain a (free) API key.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel
ChangeLog | 71 ++++++++++++++
DESCRIPTION | 31 ++----
MD5 | 20 +--
R/devices.R | 32 +++++-
R/init.R | 34 ++++++
R/pushes.R | 228 ++++++++++++++++++++++++++++++++++-----------
README.md | 34 ++++++
man/pbGetDevices.Rd | 21 +++-
man/pbPost.Rd | 72 +++++++++++---
man/rpushbullet-package.Rd | 67 ++++++++++++-
tests/simpleTests.R | 16 ++-
11 files changed, 520 insertions(+), 106 deletions(-)
Title: Read and write of MAT files together with R-to-MATLAB
connectivity
Diff between R.matlab versions 3.0.1 dated 2014-05-21 and 3.1.1 dated 2014-10-10
Description: This package provides methods readMat() and writeMat() to read and write MAT files. It also makes it possible to communicate (evaluate code, send and retrieve objects etc.) with MATLAB v6 or higher running locally or on a remote host.
Author: Henrik Bengtsson [aut, cre, cph], Andy Jacobson [ctb] (Internal MAT v4 reader), Jason Riedy [ctb] (Support for reading compressed files (via 'Rcompression'), sparse matrices and UTF-encoded strings.)
Maintainer: Henrik Bengtsson
R.matlab-3.0.1/R.matlab/inst/externals/InputStreamByteWrapper.class |only
R.matlab-3.0.1/R.matlab/inst/externals/InputStreamByteWrapper.java |only
R.matlab-3.1.1/R.matlab/DESCRIPTION | 12 -
R.matlab-3.1.1/R.matlab/MD5 | 28 +--
R.matlab-3.1.1/R.matlab/NEWS | 32 +++
R.matlab-3.1.1/R.matlab/R/901.MatlabServer.R | 2
R.matlab-3.1.1/R.matlab/R/Matlab.R | 87 ++++++++--
R.matlab-3.1.1/R.matlab/R/readMat.R | 31 ++-
R.matlab-3.1.1/R.matlab/inst/externals/MatlabServer.m | 21 +-
R.matlab-3.1.1/R.matlab/inst/java |only
R.matlab-3.1.1/R.matlab/java |only
R.matlab-3.1.1/R.matlab/man/1._The_MATLAB_server_running_in_MATLAB.Rd | 21 +-
R.matlab-3.1.1/R.matlab/man/Matlab.Rd | 39 +++-
R.matlab-3.1.1/R.matlab/man/R.matlab-package.Rd | 3
R.matlab-3.1.1/R.matlab/man/readMat.Rd | 2
R.matlab-3.1.1/R.matlab/man/startServer.Matlab.Rd | 16 +
R.matlab-3.1.1/R.matlab/tests/writeMat.R | 35 ++++
17 files changed, 259 insertions(+), 70 deletions(-)
Title: R front-end to PostgreSQL and Pivotal (Greenplum) database,
wrapper for MADlib
Diff between PivotalR versions 0.1.17.3 dated 2014-09-16 and 0.1.17.8 dated 2014-10-10
Description: R interface of Pivotal Data Fabrics running on PostgreSQL
or Pivotal (Greenplum) database with parallel and distributed
computation ability for big data analytics. PivotalR is a
package that enables users of R to interact with the Pivotal
(Greenplum) Database as well as Pivotal HD/HAWQ for Big Data
analytics. It does so by providing an interface to the
operations on tables/views in the database. These operations
are almost the same as those of data.frame. Thus the users of R
do not need to learn SQL when they operate on the objects in
the database. It also provides a wrapper for MADlib, which is
an open-source library for parallel and scalable in-database
analytics.
Author: Predictive Analytics Team at Pivotal Inc.
Maintainer: Hai Qian
DESCRIPTION | 6 +++---
MD5 | 14 +++++++-------
R/madlib-glm.R | 5 +++++
R/madlib-lm.R | 8 +++++++-
R/madlib-rpart.R | 15 ++++++++++++---
inst/doc/pivotalr.pdf |binary
man/logical-methods.Rd | 24 +++++++++++++++---------
man/madlib.rpart.Rd | 2 +-
8 files changed, 50 insertions(+), 24 deletions(-)
Title: Helpers for parameters in black-box optimization, tuning and
machine learning.
Diff between ParamHelpers versions 1.3 dated 2014-07-15 and 1.4 dated 2014-10-10
Description: A small package containing useful functions for parameter
descriptions and operations in black-box optimization, tuning
and machine learning.
Author: Bernd Bischl [aut, cre],
Michel Lang [aut],
Jakob Bossek [aut],
Daniel Horn [aut]
Maintainer: Bernd Bischl
DESCRIPTION | 12 +-
MD5 | 158 ++++++++++++++---------------
NAMESPACE | 5
NEWS | 11 ++
R/OptPath.R | 13 ++
R/OptPathDF_as_data_frame.R | 23 ++--
R/OptPathDF_getter.R | 51 +++++----
R/OptPathDF_setter.R | 4
R/OptPath_getter.R | 65 ++++++++---
R/aParam.R | 3
R/convertParamSetToIrace.R | 5
R/dfRowsToList.R | 3
R/extractParamSetFromSooFunction.R | 9 -
R/generateDesign.R | 15 --
R/generateGridDesign.R | 13 --
R/generateRandomDesign.R |only
R/getBounds.R | 3
R/getDefaults.R | 3
R/getParamTypes.R | 7 -
R/hasFiniteBoxConstraints.R | 3
R/paramValueToString.R | 3
R/sample.R | 6 -
R/setValueCNames.R | 4
R/trafo.R | 3
R/utils.R | 16 ++
man/LearnerParam.Rd | 18 +--
man/OptPath.Rd | 5
man/Param.Rd | 32 ++---
man/addOptPathEl.Rd | 5
man/as.data.frame.OptPathDF.Rd | 15 ++
man/convertParamSetToIrace.Rd | 2
man/dfRowsToList.Rd | 2
man/discreteNameToValue.Rd | 2
man/discreteValueToName.Rd | 2
man/dropParams.Rd | 2
man/extractParamSetFromSooFunction.Rd | 5
man/filterParams.Rd | 2
man/generateDesign.Rd | 4
man/generateGridDesign.Rd | 2
man/generateRandomDesign.Rd |only
man/getDefaults.Rd | 2
man/getLower.Rd | 2
man/getOptPathBestIndex.Rd | 13 +-
man/getOptPathCol.Rd | 17 ++-
man/getOptPathCols.Rd | 17 ++-
man/getOptPathDOB.Rd | 17 ++-
man/getOptPathEOL.Rd | 17 ++-
man/getOptPathEl.Rd | 5
man/getOptPathErrorMessages.Rd | 17 ++-
man/getOptPathExecTimes.Rd | 17 ++-
man/getOptPathLength.Rd | 5
man/getOptPathParetoFront.Rd | 13 +-
man/getOptPathX.Rd |only
man/getOptPathY.Rd | 16 ++
man/getParamIds.Rd | 2
man/getParamLengths.Rd | 2
man/getParamNr.Rd | 2
man/getParamTypeCounts.Rd | 2
man/getParamTypes.Rd | 4
man/hasFiniteBoxConstraints.Rd | 2
man/hasForbidden.Rd | 2
man/hasRequires.Rd | 2
man/hasTrafo.Rd | 2
man/hasType.Rd | 2
man/isEmpty.Rd | 2
man/isFeasible.Rd | 2
man/isForbidden.Rd | 2
man/isType.Rd | 2
man/makeParamSet.Rd | 2
man/paramValueToString.Rd | 2
man/removeMissingValues.Rd | 2
man/repairPoint.Rd | 2
man/sampleValue.Rd | 4
man/sampleValues.Rd | 4
man/setOptPathElDOB.Rd | 5
man/setOptPathElEOL.Rd | 5
man/setValueCNames.Rd | 2
man/trafoOptPath.Rd | 2
man/trafoValue.Rd | 2
tests/testthat/test_OptPath.R | 37 ++++++
tests/testthat/test_ParamSet.R | 16 ++
tests/testthat/test_generateRandomDesign.R |only
82 files changed, 516 insertions(+), 293 deletions(-)
Title: Automating Mplus Model Estimation and Interpretation
Diff between MplusAutomation versions 0.6-2 dated 2013-10-24 and 0.6-3 dated 2014-10-10
More information about MplusAutomation at CRAN
Description: The MplusAutomation package leverages the flexibility of the R
language to automate latent variable model estimation and interpretation
using Mplus, a powerful latent variable modeling program developed by
Muthen and Muthen (www.statmodel.com). Specifically, MplusAutomation
provides routines for creating related groups of models, running batches of
models, and extracting and tabulating model parameters and fit statistics.
Author: Michael Hallquist [aut, cre],
Joshua Wiley [aut]
Maintainer: Michael Hallquist
MplusAutomation-0.6-2/MplusAutomation/man/coef.mplusObject.Rd |only
MplusAutomation-0.6-3/MplusAutomation/DESCRIPTION | 26
MplusAutomation-0.6-3/MplusAutomation/MD5 | 207 +-
MplusAutomation-0.6-3/MplusAutomation/NAMESPACE | 35
MplusAutomation-0.6-3/MplusAutomation/NEWS | 37
MplusAutomation-0.6-3/MplusAutomation/R/MplusAutomation.R | 3
MplusAutomation-0.6-3/MplusAutomation/R/compareModels.R | 31
MplusAutomation-0.6-3/MplusAutomation/R/createModels.R | 41
MplusAutomation-0.6-3/MplusAutomation/R/extractAuxDis.R | 58
MplusAutomation-0.6-3/MplusAutomation/R/extractParameters.R | 10
MplusAutomation-0.6-3/MplusAutomation/R/extractSaveData.R | 1
MplusAutomation-0.6-3/MplusAutomation/R/graphModels.R | 1
MplusAutomation-0.6-3/MplusAutomation/R/methods.R | 329 ++++
MplusAutomation-0.6-3/MplusAutomation/R/mplus.R | 105 -
MplusAutomation-0.6-3/MplusAutomation/R/parseOutput.R | 742 +++++-----
MplusAutomation-0.6-3/MplusAutomation/R/runModels.R | 16
MplusAutomation-0.6-3/MplusAutomation/R/utilityFunctions.R | 6
MplusAutomation-0.6-3/MplusAutomation/README.md | 170 +-
MplusAutomation-0.6-3/MplusAutomation/build/vignette.rds |binary
MplusAutomation-0.6-3/MplusAutomation/inst/doc/Vignette.Rnw | 4
MplusAutomation-0.6-3/MplusAutomation/man/HTMLSummaryTable.Rd | 72
MplusAutomation-0.6-3/MplusAutomation/man/LatexSummaryTable.Rd | 70
MplusAutomation-0.6-3/MplusAutomation/man/MplusAutomation.Rd | 124 -
MplusAutomation-0.6-3/MplusAutomation/man/addHeaderToSavedata.Rd | 12
MplusAutomation-0.6-3/MplusAutomation/man/addNode.Rd | 15
MplusAutomation-0.6-3/MplusAutomation/man/cd.Rd | 40
MplusAutomation-0.6-3/MplusAutomation/man/classifyTags.Rd | 18
MplusAutomation-0.6-3/MplusAutomation/man/clipString.Rd | 13
MplusAutomation-0.6-3/MplusAutomation/man/coef.mplus.model.Rd |only
MplusAutomation-0.6-3/MplusAutomation/man/compareModels.Rd | 168 +-
MplusAutomation-0.6-3/MplusAutomation/man/connectNodes.Rd | 17
MplusAutomation-0.6-3/MplusAutomation/man/createModels.Rd | 22
MplusAutomation-0.6-3/MplusAutomation/man/createSyntax.Rd | 33
MplusAutomation-0.6-3/MplusAutomation/man/createVarSyntax.Rd | 14
MplusAutomation-0.6-3/MplusAutomation/man/divideIntoFields.Rd | 12
MplusAutomation-0.6-3/MplusAutomation/man/evaluateConditional.Rd | 14
MplusAutomation-0.6-3/MplusAutomation/man/extract.Rd |only
MplusAutomation-0.6-3/MplusAutomation/man/extractAux.Rd | 11
MplusAutomation-0.6-3/MplusAutomation/man/extractClassCounts.Rd | 11
MplusAutomation-0.6-3/MplusAutomation/man/extractFacScoreStats.Rd | 13
MplusAutomation-0.6-3/MplusAutomation/man/extractFreeFile.Rd | 15
MplusAutomation-0.6-3/MplusAutomation/man/extractInput_1file.Rd | 12
MplusAutomation-0.6-3/MplusAutomation/man/extractModIndices.Rd | 88 -
MplusAutomation-0.6-3/MplusAutomation/man/extractModIndices_1file.Rd | 11
MplusAutomation-0.6-3/MplusAutomation/man/extractModelParameters.Rd | 212 +-
MplusAutomation-0.6-3/MplusAutomation/man/extractModelSummaries.Rd | 169 --
MplusAutomation-0.6-3/MplusAutomation/man/extractParameters_1chunk.Rd | 20
MplusAutomation-0.6-3/MplusAutomation/man/extractParameters_1file.Rd | 14
MplusAutomation-0.6-3/MplusAutomation/man/extractParameters_1section.Rd | 14
MplusAutomation-0.6-3/MplusAutomation/man/extractResiduals.Rd | 14
MplusAutomation-0.6-3/MplusAutomation/man/extractSummaries_1file.Rd | 15
MplusAutomation-0.6-3/MplusAutomation/man/extractSummaries_1plan.Rd | 22
MplusAutomation-0.6-3/MplusAutomation/man/extractSummaries_1section.Rd | 17
MplusAutomation-0.6-3/MplusAutomation/man/extractTech1.Rd | 13
MplusAutomation-0.6-3/MplusAutomation/man/extractTech10.Rd | 13
MplusAutomation-0.6-3/MplusAutomation/man/extractTech12.Rd | 21
MplusAutomation-0.6-3/MplusAutomation/man/extractTech3.Rd | 15
MplusAutomation-0.6-3/MplusAutomation/man/extractTech4.Rd | 13
MplusAutomation-0.6-3/MplusAutomation/man/extractTech7.Rd | 17
MplusAutomation-0.6-3/MplusAutomation/man/extractTech9.Rd | 13
MplusAutomation-0.6-3/MplusAutomation/man/extractValue.Rd | 27
MplusAutomation-0.6-3/MplusAutomation/man/extractWarningsErrors_1file.Rd | 14
MplusAutomation-0.6-3/MplusAutomation/man/finalizeInitCollection.Rd | 30
MplusAutomation-0.6-3/MplusAutomation/man/getInitTags.Rd | 9
MplusAutomation-0.6-3/MplusAutomation/man/getMultilineSection.Rd | 22
MplusAutomation-0.6-3/MplusAutomation/man/getSavedata_Bparams.Rd | 49
MplusAutomation-0.6-3/MplusAutomation/man/getSavedata_Data.Rd | 31
MplusAutomation-0.6-3/MplusAutomation/man/getSavedata_Fileinfo.Rd | 52
MplusAutomation-0.6-3/MplusAutomation/man/graphModel.Rd | 9
MplusAutomation-0.6-3/MplusAutomation/man/l_getSavedata_Bparams.Rd | 17
MplusAutomation-0.6-3/MplusAutomation/man/l_getSavedata_Fileinfo.Rd | 44
MplusAutomation-0.6-3/MplusAutomation/man/l_getSavedata_readRawFile.Rd | 29
MplusAutomation-0.6-3/MplusAutomation/man/lookupSimpleTags.Rd | 18
MplusAutomation-0.6-3/MplusAutomation/man/lookupTech1Parameter.Rd | 27
MplusAutomation-0.6-3/MplusAutomation/man/lookupValue.Rd | 14
MplusAutomation-0.6-3/MplusAutomation/man/matrixExtract.Rd | 17
MplusAutomation-0.6-3/MplusAutomation/man/mplus.traceplot.Rd | 53
MplusAutomation-0.6-3/MplusAutomation/man/mplusModeler.Rd | 112 -
MplusAutomation-0.6-3/MplusAutomation/man/mplusObject.Rd | 122 -
MplusAutomation-0.6-3/MplusAutomation/man/mplusRcov.Rd | 282 +--
MplusAutomation-0.6-3/MplusAutomation/man/paramExtract.Rd | 74
MplusAutomation-0.6-3/MplusAutomation/man/parseMplus.Rd | 42
MplusAutomation-0.6-3/MplusAutomation/man/parseTags.Rd | 25
MplusAutomation-0.6-3/MplusAutomation/man/plot.mplusObject.Rd | 25
MplusAutomation-0.6-3/MplusAutomation/man/prepareMplusData.Rd | 92 -
MplusAutomation-0.6-3/MplusAutomation/man/prepareMplusData_Mat.Rd | 14
MplusAutomation-0.6-3/MplusAutomation/man/print.MplusRstructure.Rd | 25
MplusAutomation-0.6-3/MplusAutomation/man/processConditionalTags.Rd | 12
MplusAutomation-0.6-3/MplusAutomation/man/processInit.Rd | 10
MplusAutomation-0.6-3/MplusAutomation/man/readModels.Rd | 113 -
MplusAutomation-0.6-3/MplusAutomation/man/recurseReplace.Rd | 16
MplusAutomation-0.6-3/MplusAutomation/man/replaceBodyTags.Rd | 14
MplusAutomation-0.6-3/MplusAutomation/man/replaceInitTags.Rd | 12
MplusAutomation-0.6-3/MplusAutomation/man/rmVarWarnings.Rd | 39
MplusAutomation-0.6-3/MplusAutomation/man/runModels.Rd | 94 -
MplusAutomation-0.6-3/MplusAutomation/man/runModels_Interactive.Rd | 58
MplusAutomation-0.6-3/MplusAutomation/man/showSummaryTable.Rd | 65
MplusAutomation-0.6-3/MplusAutomation/man/splitDFByRow.Rd | 12
MplusAutomation-0.6-3/MplusAutomation/man/subsetModelList.Rd | 17
MplusAutomation-0.6-3/MplusAutomation/man/summary.mplusObject.Rd | 28
MplusAutomation-0.6-3/MplusAutomation/man/testBParamCompoundConstraint.Rd | 65
MplusAutomation-0.6-3/MplusAutomation/man/testBParamConstraint.Rd | 59
MplusAutomation-0.6-3/MplusAutomation/man/unlabeledMatrixExtract.Rd | 16
MplusAutomation-0.6-3/MplusAutomation/man/update.mplusObject.Rd | 26
MplusAutomation-0.6-3/MplusAutomation/man/updateCurrentValues.Rd | 14
MplusAutomation-0.6-3/MplusAutomation/vignettes/Vignette.Rnw | 4
106 files changed, 2650 insertions(+), 2528 deletions(-)
Permanent link
Title: Multidimensional Item Response Theory
Diff between mirt versions 1.5 dated 2014-08-14 and 1.6.1 dated 2014-10-10
Description: Analysis of dichotomous and polytomous response data using
unidimensional and multidimensional latent trait models under the Item
Response Theory paradigm. Exploratory and confirmatory models can be
estimated with quadrature (EM) or stochastic (MHRM) methods. Confirmatory
bi-factor and two-tier analyses are available for modeling item testlets.
Multiple group analysis and mixed effects designs also are available for
detecting differential item functioning and modelling item and person
covariates.
Author: Phil Chalmers [aut, cre, cph],
Joshua Pritikin [ctb],
Alexander Robitzsch [ctb],
Mateusz Zoltak [ctb]
Maintainer: Phil Chalmers
mirt-1.5/mirt/man/read.mirt.Rd |only
mirt-1.6.1/mirt/DESCRIPTION | 13
mirt-1.6.1/mirt/MD5 | 209 +++----
mirt-1.6.1/mirt/NAMESPACE | 6
mirt-1.6.1/mirt/NEWS | 72 ++
mirt-1.6.1/mirt/R/00-classes.R | 74 ++
mirt-1.6.1/mirt/R/01-itemtypes.R | 3
mirt-1.6.1/mirt/R/02-item_methods.R | 47 +
mirt-1.6.1/mirt/R/03-estimation.R | 558 +++++++++++---------
mirt-1.6.1/mirt/R/04-derivatives.R | 33 +
mirt-1.6.1/mirt/R/Confirmatory-methods.R | 7
mirt-1.6.1/mirt/R/DIF.R | 11
mirt-1.6.1/mirt/R/DTF.R | 2
mirt-1.6.1/mirt/R/Discrete-methods.R |only
mirt-1.6.1/mirt/R/EMstep.group.R | 326 ++---------
mirt-1.6.1/mirt/R/EMstep.utils.R |only
mirt-1.6.1/mirt/R/Exploratory-methods.R | 147 ++---
mirt-1.6.1/mirt/R/LoadPars.R | 27
mirt-1.6.1/mirt/R/M2.R | 69 +-
mirt-1.6.1/mirt/R/MHRM.group.R | 2
mirt-1.6.1/mirt/R/PLCI.mirt.R | 24
mirt-1.6.1/mirt/R/PrepData.R | 4
mirt-1.6.1/mirt/R/SE.methods.R | 4
mirt-1.6.1/mirt/R/bfactor.R | 4
mirt-1.6.1/mirt/R/boot.mirt.R | 32 -
mirt-1.6.1/mirt/R/createItem.R | 7
mirt-1.6.1/mirt/R/fscores.R | 23
mirt-1.6.1/mirt/R/fscores.internal.R | 109 +++
mirt-1.6.1/mirt/R/itemfit.R | 138 +---
mirt-1.6.1/mirt/R/itemplot.R | 24
mirt-1.6.1/mirt/R/itemplot.internal.R | 32 -
mirt-1.6.1/mirt/R/mdirt.R |only
mirt-1.6.1/mirt/R/mirt-package.R | 19
mirt-1.6.1/mirt/R/mirt.R | 101 ++-
mirt-1.6.1/mirt/R/mirt.model.R | 193 +++++-
mirt-1.6.1/mirt/R/mirtCluster.R | 45 -
mirt-1.6.1/mirt/R/mixedmirt.R | 7
mirt-1.6.1/mirt/R/mod2values.R | 2
mirt-1.6.1/mirt/R/model.elements.R | 4
mirt-1.6.1/mirt/R/multipleGroup.R | 5
mirt-1.6.1/mirt/R/personfit.R | 2
mirt-1.6.1/mirt/R/read.mirt.R | 387 ++++++-------
mirt-1.6.1/mirt/R/shinyItemplot.R | 233 ++++----
mirt-1.6.1/mirt/R/utils.R | 248 +++++++-
mirt-1.6.1/mirt/R/wald.R | 2
mirt-1.6.1/mirt/README.md | 7
mirt-1.6.1/mirt/inst/doc/mirt-vignettes.html | 16
mirt-1.6.1/mirt/man/Bock1997.Rd | 4
mirt-1.6.1/mirt/man/ConfirmatoryClass-class.Rd | 2
mirt-1.6.1/mirt/man/DIF.Rd | 24
mirt-1.6.1/mirt/man/DTF.Rd | 2
mirt-1.6.1/mirt/man/DiscreteClass-class.Rd |only
mirt-1.6.1/mirt/man/ExploratoryClass-class.Rd | 2
mirt-1.6.1/mirt/man/LSAT6.Rd | 7
mirt-1.6.1/mirt/man/LSAT7.Rd | 2
mirt-1.6.1/mirt/man/M2.Rd | 15
mirt-1.6.1/mirt/man/MixedClass-class.Rd | 2
mirt-1.6.1/mirt/man/MultipleGroupClass-class.Rd | 2
mirt-1.6.1/mirt/man/PLCI.mirt.Rd | 6
mirt-1.6.1/mirt/man/SAT12.Rd | 10
mirt-1.6.1/mirt/man/Science.Rd | 2
mirt-1.6.1/mirt/man/anova-method.Rd | 3
mirt-1.6.1/mirt/man/bfactor.Rd | 6
mirt-1.6.1/mirt/man/boot.mirt.Rd | 5
mirt-1.6.1/mirt/man/coef-method.Rd | 19
mirt-1.6.1/mirt/man/createItem.Rd | 9
mirt-1.6.1/mirt/man/deAyala.Rd | 2
mirt-1.6.1/mirt/man/expand.table.Rd | 2
mirt-1.6.1/mirt/man/expected.item.Rd | 2
mirt-1.6.1/mirt/man/expected.test.Rd | 2
mirt-1.6.1/mirt/man/extract.group.Rd | 2
mirt-1.6.1/mirt/man/extract.item.Rd | 2
mirt-1.6.1/mirt/man/fscores.Rd | 49 +
mirt-1.6.1/mirt/man/imputeMissing.Rd | 2
mirt-1.6.1/mirt/man/itemfit.Rd | 27
mirt-1.6.1/mirt/man/iteminfo.Rd | 2
mirt-1.6.1/mirt/man/itemplot.Rd | 6
mirt-1.6.1/mirt/man/key2binary.Rd | 2
mirt-1.6.1/mirt/man/mdirt.Rd |only
mirt-1.6.1/mirt/man/mirt-package.Rd | 2
mirt-1.6.1/mirt/man/mirt.Rd | 199 ++++---
mirt-1.6.1/mirt/man/mirt.model.Rd | 37 +
mirt-1.6.1/mirt/man/mirtCluster.Rd | 2
mirt-1.6.1/mirt/man/mixedmirt.Rd | 8
mirt-1.6.1/mirt/man/mod2values.Rd | 2
mirt-1.6.1/mirt/man/multipleGroup.Rd | 7
mirt-1.6.1/mirt/man/personfit.Rd | 2
mirt-1.6.1/mirt/man/plot-method.Rd | 25
mirt-1.6.1/mirt/man/print-method.Rd | 3
mirt-1.6.1/mirt/man/probtrace.Rd | 2
mirt-1.6.1/mirt/man/randef.Rd | 2
mirt-1.6.1/mirt/man/residuals-method.Rd | 9
mirt-1.6.1/mirt/man/show-method.Rd | 3
mirt-1.6.1/mirt/man/simdata.Rd | 24
mirt-1.6.1/mirt/man/summary-method.Rd | 7
mirt-1.6.1/mirt/man/testinfo.Rd | 2
mirt-1.6.1/mirt/man/wald.Rd | 8
mirt-1.6.1/mirt/src/dpars.cpp | 48 +
mirt-1.6.1/mirt/src/traceLinePts.cpp | 69 ++
mirt-1.6.1/mirt/src/traceLinePts.h | 3
mirt-1.6.1/mirt/tests/tests/test-01-mirtOne.R | 14
mirt-1.6.1/mirt/tests/tests/test-02-mirtTwo.R | 23
mirt-1.6.1/mirt/tests/tests/test-03-bfactor.R | 13
mirt-1.6.1/mirt/tests/tests/test-04-multipleGroup.R | 3
mirt-1.6.1/mirt/tests/tests/test-05-confmirtOne.R | 6
mirt-1.6.1/mirt/tests/tests/test-07-mixedmirt.R | 6
mirt-1.6.1/mirt/tests/tests/test-09-mirt.model.R | 24
mirt-1.6.1/mirt/tests/tests/test-10-extras.R | 10
mirt-1.6.1/mirt/tests/tests/test-11-discrete.R |only
109 files changed, 2473 insertions(+), 1590 deletions(-)
Title: Install Packages from Snapshots on the Checkpoint Server for
Reproducibility
Diff between checkpoint versions 0.3.2 dated 2014-10-01 and 0.3.3 dated 2014-10-10
Description: The goal of checkpoint is to solve the problem of package
reproducibility in R. Specifically, checkpoint allows you to install
packages as they existed on CRAN on a specific snapshot date as if you had
a CRAN time machine. To achieve reproducibility, the checkpoint() function
installs the packages required or called by your project and scripts to a
local library exactly as they existed at the specified point in time. Only
those packages are available to your project, thereby avoiding any package
updates that came later and may have altered your results. In this way,
anyone using checkpoint's checkpoint() can ensure the reproducibility of
your scripts or projects at any time. To create the snapshot archives, once
a day (at midnight UTC) we refresh the Austria CRAN mirror, on the "Managed
R Archived Network" server (http://mran.revolutionanalytics.com/).
Immediately after completion of the rsync mirror process, we take a
snapshot, thus creating the archive. Snapshot archives exist starting from
2014-09-17.
Author: Revolution Analytics
Maintainer: Andrie de Vries
DESCRIPTION | 7 ++++---
MD5 | 12 ++++++------
NAMESPACE | 2 +-
R/checkpoint.R | 8 ++++++--
man/checkpoint-package.Rd | 2 +-
man/checkpoint.Rd | 2 +-
tests/testthat/test-1-checkpoint.R | 20 ++++++++++----------
7 files changed, 29 insertions(+), 24 deletions(-)
Title: Benchmark and Frontier Analysis Using DEA and SFA
Diff between Benchmarking versions 0.23 dated 2013-01-20 and 0.24 dated 2014-10-10
Description: The Benchmarking package contains methods for frontier
analysis. It supports Data Envelopment Analysis (DEA) under different
technology assumptions (fdh, vrs, drs, crs, irs, add/frh, and fdh+),
and using different efficiency measures (input based, output based,
hyperbolic graph, additive, super, and directional efficiency). Peers
and slacks are available, partial price information can be included,
and optimal cost, revenue and profit can be calculated. Evaluation of
mergers is also supported. Methods for graphing the technology sets
are also included. The package also support comparative methods based
on Stochastic Frontier Analyses (SFA). In general, the methods can be
used to solve not only standard models, but also many other model
variants. The package complements the book, Bogetoft and Otto,
Benchmarking with DEA, SFA, and R, Springer-Verlag, 2011, but can of
course also be used as a stand-alone package.
Author: Peter Bogetoft and Lars Otto
Maintainer: Lars Otto
DESCRIPTION | 42 ++++++++----------
MD5 | 38 ++++++++---------
NAMESPACE | 5 +-
NEWS | 19 ++++++++
R/boot.fear.R | 22 ++++-----
R/dea.R | 21 +++++----
R/dea.boot.R | 14 ++++--
R/dea.plot.R | 5 +-
R/dea.web.R | 3 +
R/malmq.R |only
R/malmquist.R |only
R/minDirection.R | 98 +++++++++++++++++++++++++++++++++++++-------
R/sfa.R | 4 -
man/Benchmarking-package.Rd | 16 +++----
man/critValue.Rd | 7 +--
man/dea.Rd | 6 +-
man/dea.boot.Rd | 36 ++++++++--------
man/dea.direct.Rd | 6 +-
man/eff.dens.Rd | 4 -
man/mea.Rd | 14 +++---
man/typeIerror.Rd | 9 ++--
21 files changed, 238 insertions(+), 131 deletions(-)
Title: Linear Group Fixed Effects
Diff between lfe versions 1.7-1401 dated 2014-10-09 and 1.7-1404 dated 2014-10-10
Description: Transforms away factors with many levels prior to doing an OLS.
Useful for estimating linear models with multiple group fixed effects, and for
estimating linear models which uses factors as pure control variables.
Includes support for instrumented variables, robust and multi-way clustered standard errors.
Author: Simen Gaure, Ragnar Frisch Centre for Economic Research
Maintainer: Simen Gaure
DESCRIPTION | 8 ++++----
MD5 | 22 +++++++++++-----------
R/trace.R | 14 ++++++++------
R/utils.R | 10 +++++++++-
configure | 31 +++++++++++++++++++------------
configure.ac | 9 ++++++---
inst/doc/CHANGELOG | 4 +++-
inst/doc/identification.pdf |binary
inst/doc/lfehow.pdf |binary
inst/doc/speed.pdf |binary
src/Makevars.in | 2 +-
src/lfe.c | 20 +++++++++-----------
12 files changed, 70 insertions(+), 50 deletions(-)
Title: Generating Various Numerical Representation Schemes of Protein
Sequence
Diff between protr versions 0.3-1 dated 2014-08-23 and 0.4-1 dated 2014-10-10
Description: Comprehensive toolkit for generating various numerical
representation schemes of protein sequence. The descriptors and similarity
scores included are extensively utilized in bioinformatics and
chemogenomics research.
Author: Nan Xiao
Maintainer: Nan Xiao
DESCRIPTION | 44 ++-------
MD5 | 183 +++++++++++++++++++++--------------------
NAMESPACE | 6 -
NEWS | 10 ++
R/desc04MoreauBroto.R | 10 +-
R/desc05Moran.R | 10 +-
R/desc06Geary.R | 10 +-
R/desc13PAAC.R | 21 +++-
R/desc14APAAC.R | 18 ++--
R/desc15PSSM.R |only
R/desc15PSSMAcc.R |only
R/desc15PSSMFeature.R |only
R/misc04protseg.R | 26 +++--
R/misc05getUniProt.R | 2
R/par01parSeqSim.R | 2
R/par02parGOSim.R | 2
R/protr-package.R | 69 ++++++---------
README | 80 ++++++++---------
build/vignette.rds |binary
inst/CITATION | 26 ++---
inst/doc/protr.R | 2
inst/doc/protr.Rnw | 104 ++++++++++++++---------
inst/doc/protr.pdf |binary
inst/protseq/Plasminogen.fasta |only
man/AA2DACOR.Rd | 2
man/AA3DMoRSE.Rd | 2
man/AAACF.Rd | 2
man/AABLOSUM100.Rd | 2
man/AABLOSUM45.Rd | 2
man/AABLOSUM50.Rd | 2
man/AABLOSUM62.Rd | 2
man/AABLOSUM80.Rd | 2
man/AABurden.Rd | 2
man/AACPSA.Rd | 2
man/AAConn.Rd | 2
man/AAConst.Rd | 2
man/AADescAll.Rd | 2
man/AAEdgeAdj.Rd | 2
man/AAEigIdx.Rd | 2
man/AAFGC.Rd | 2
man/AAGETAWAY.Rd | 2
man/AAGeom.Rd | 2
man/AAInfo.Rd | 2
man/AAMOE2D.Rd | 2
man/AAMOE3D.Rd | 2
man/AAMetaInfo.Rd | 2
man/AAMolProp.Rd | 2
man/AAPAM120.Rd | 2
man/AAPAM250.Rd | 2
man/AAPAM30.Rd | 2
man/AAPAM40.Rd | 2
man/AAPAM70.Rd | 2
man/AARDF.Rd | 2
man/AARandic.Rd | 2
man/AATopo.Rd | 2
man/AATopoChg.Rd | 2
man/AAWHIM.Rd | 2
man/AAWalk.Rd | 2
man/AAindex.Rd | 2
man/OptAA3d.Rd | 2
man/acc.Rd | 2
man/extractAAC.Rd | 2
man/extractAPAAC.Rd | 18 ++--
man/extractBLOSUM.Rd | 2
man/extractCTDC.Rd | 2
man/extractCTDD.Rd | 2
man/extractCTDT.Rd | 2
man/extractCTriad.Rd | 2
man/extractDC.Rd | 2
man/extractDescScales.Rd | 2
man/extractFAScales.Rd | 2
man/extractGeary.Rd | 12 +-
man/extractMDSScales.Rd | 2
man/extractMoran.Rd | 12 +-
man/extractMoreauBroto.Rd | 12 +-
man/extractPAAC.Rd | 21 +++-
man/extractPSSM.Rd |only
man/extractPSSMAcc.Rd |only
man/extractPSSMFeature.Rd |only
man/extractPropScales.Rd | 2
man/extractQSO.Rd | 2
man/extractSOCN.Rd | 2
man/extractScales.Rd | 2
man/extractTC.Rd | 2
man/getUniProt.Rd | 4
man/parGOSim.Rd | 4
man/parSeqSim.Rd | 4
man/protcheck.Rd | 2
man/protr-package.Rd | 54 ++++--------
man/protseg.Rd | 11 +-
man/readFASTA.Rd | 2
man/readPDB.Rd | 2
man/twoGOSim.Rd | 2
man/twoSeqSim.Rd | 2
vignettes/protr.Rnw | 104 ++++++++++++++---------
vignettes/protr.bib | 31 ++++++
96 files changed, 563 insertions(+), 463 deletions(-)
Title: Power and Sample size distribution of 2-stage BE studies via
simulations
Diff between Power2Stage versions 0.1-4 dated 2014-07-24 and 0.1-5 dated 2014-10-10
Description: Contains a function to calculate power and sample size distribution
of 2-stage BE studies with a 2x2 crossover design according to
Potvin et al. / Montague et al. modified to include a futility Nmax
and modified to do the sample size estimation step with PE and mse
of stage 1. Contains further a function with the modifications
according to Karalis & Macheras which use PE and mse from stage 1
also for the power monitoring steps.
The third function power.2stage.fC() calculates power and sample
size distribution of 2-stage BE studies with a futility criterion
for the point estimator or CI of T/R from stage 1.
The fourth function power.2stage.GS() calculates power of non-adaptive
group sequential (2-stage) BE studies.
The fifth function power.2stage.p() calculates power and sample size
distribution of 2-stage BE studies with 2 parallel groups.
Author: Detlew Labes [aut, cre],
Helmut Schuetz [ctb]
Maintainer: Detlew Labes
DESCRIPTION | 31 +++---
MD5 | 14 +-
NAMESPACE | 1
NEWS | 10 +-
R/power_2stage_Bf.R | 238 +++----------------------------------------------
R/power_2stage_fC.R |only
man/power.2stage.Bf.Rd | 17 ++-
man/power.2stage.Rd | 6 -
man/power.2stage.fC.Rd |only
9 files changed, 63 insertions(+), 254 deletions(-)