Title: Reads, annotates, and normalizes reverse phase protein array
data
Diff between RPPanalyzer versions 1.3 dated 2014-06-29 and 1.4 dated 2014-11-04
Description: Reads in sample description and slide description files and
annotates the expression values taken from gpr files. After
normalization data can be visualized as boxplot, heatmap or
dotplot.
Author: Heiko Mannsperger with contributions of Stephan Gade
Maintainer: Christian Bender
DESCRIPTION | 10 +++++-----
MD5 | 8 ++++----
R/dataPreproc.R | 23 ++++++++++++++++++-----
build/vignette.rds |binary
man/dataPreproc.Rd | 4 +++-
5 files changed, 30 insertions(+), 15 deletions(-)
Title: Quandl Data Connection
Diff between Quandl versions 2.3.2 dated 2014-04-09 and 2.4.0 dated 2014-11-04
Description: This package interacts directly with the Quandl API to offer data
in a number of formats usable in R, as well as the ability to upload and
search.
Author: Raymond McTaggart, Gergely Daroczi
Maintainer: Raymond McTaggart
Quandl-2.3.2/Quandl/man/Quandl.limit.Rd |only
Quandl-2.4.0/Quandl/ChangeLog | 30 ++++++++
Quandl-2.4.0/Quandl/DESCRIPTION | 12 +--
Quandl-2.4.0/Quandl/MD5 | 30 ++++----
Quandl-2.4.0/Quandl/NAMESPACE | 11 ++-
Quandl-2.4.0/Quandl/R/Quandl.R | 97 ++++++++++++-----------------
Quandl-2.4.0/Quandl/R/Quandlapi.R | 41 +++++++++---
Quandl-2.4.0/Quandl/R/Quandlpush.R | 22 +++---
Quandl-2.4.0/Quandl/R/Quandlsearch.R | 11 ---
Quandl-2.4.0/Quandl/README.md | 5 +
Quandl-2.4.0/Quandl/man/Quandl.Rd | 59 ++++++-----------
Quandl-2.4.0/Quandl/man/Quandl.auth.Rd | 12 +--
Quandl-2.4.0/Quandl/man/Quandl.curlopts.Rd |only
Quandl-2.4.0/Quandl/man/Quandl.push.Rd | 33 ++++-----
Quandl-2.4.0/Quandl/man/Quandl.search.Rd | 36 ++++------
Quandl-2.4.0/Quandl/man/metaData.Rd | 12 +--
Quandl-2.4.0/Quandl/man/quandl.api.Rd | 34 +++-------
17 files changed, 227 insertions(+), 218 deletions(-)
Title: Weaning Age Reconstruction with Nitrogen isotope analysis
Diff between WARN versions 1.0 dated 2013-04-12 and 1.1 dated 2014-11-04
Description: This estimates precise weaning ages
for a given skeletal population
by analyzing the stable nitrogen isotope ratios of them.
Bone collagen turnover rates estimated anew and
the approximate Bayesian computation (ABC)
were adopted in this package.
Author: Takumi Tsutaya
Maintainer: Takumi Tsutaya
DESCRIPTION | 19 ++++++++++---------
MD5 | 20 ++++++++++----------
R/warn.R | 18 +++++++-----------
R/warn_s3.R | 8 +++++++-
man/WARN-package.Rd | 6 +++---
man/plot.warn.Rd | 2 +-
man/plot.warnProb.Rd | 2 +-
man/summary.warn.Rd | 2 +-
man/summary.warnProb.Rd | 2 +-
man/warn.Rd | 2 +-
man/warnProb.Rd | 2 +-
11 files changed, 43 insertions(+), 40 deletions(-)
Title: Variance estimation for surveys by the ultimate cluster method
Diff between vardpoor versions 0.2.0.13 dated 2014-10-06 and 0.2.0.14 dated 2014-11-04
Description: Generation of domain variables, linearisation of several nonlinear population statistics (the ratio of two totals, weighted income percentile, at-risk-of-poverty rate, at-risk-of-poverty threshold, Gini coefficient, gender pay gap, median income below at-risk-of-poverty gap, income quintile share ratio, relative median at-risk-of-poverty gap), computation of regression residuals in case of weight calibration, variance estimation of sample surveys by the ultimate cluster method (Hansen, Hurwitz and Madow, 1953), variance estimation for longitudinal, crossectional measures and measures of change for single and multistage stage cluster sampling designs (Berger, Y.G.). Several other precision measures are derived - standard error, the coefficient of variation, the margin of error, confidence interval, design effect.
Author: Juris Breidaks [aut, cre], Martins Liberts [aut], Santa Ivanova [aut]
Maintainer: Juris Breidaks
DESCRIPTION | 21 ++++++--------
MD5 | 30 ++++++++++----------
R/vardchanges.R | 17 +++++------
R/vardcros.R | 29 +++++++++----------
R/vardom.R | 61 ++++++++++++++++++++++-------------------
R/vardom_othstr.R | 71 +++++++++++++++++++++++++++++++-----------------
R/vardomh.R | 71 +++++++++++++++++++++++-------------------------
R/variance_est.R | 7 ++++
R/variance_othstr.R | 28 ++++++++++++------
R/varpoord.R | 51 ++++++++++++++--------------------
README | 4 +-
inst/CITATION | 4 +-
inst/NEWS | 10 +++++-
man/vardom_othstr.Rd | 6 ++--
man/vardpoor-package.Rd | 11 ++++---
man/variance_othstr.Rd | 18 +++++++-----
16 files changed, 240 insertions(+), 199 deletions(-)
Title: Analyze system scalability with the Universal Scalability Law
Diff between usl versions 1.3.1 dated 2014-06-20 and 1.4.0 dated 2014-11-04
Description: The Universal Scalability Law is a model to
predict hardware and software scalability. It uses
system capacity as a function of load to forecast the
scalability for the system.
Author: Neil J. Gunther [aut],
Stefan Moeding [aut, cre]
Maintainer: Stefan Moeding
DESCRIPTION | 8 +--
MD5 | 88 +++++++++++++++++-----------------
NAMESPACE | 3 -
NEWS | 6 ++
R/AllGenerics.R | 2
R/overhead.R |only
R/usl-package.R | 2
R/usl.R | 10 +++
build/vignette.rds |binary
inst/doc/usl.R | 65 +++++++++++++++++--------
inst/doc/usl.Rnw | 95 +++++++++++++++++++++++++++++++++++--
inst/doc/usl.pdf |binary
man/USL-class.Rd | 2
man/cash-USL-method.Rd | 2
man/confint-USL-method.Rd | 2
man/efficiency-USL-method.Rd | 2
man/gradient.usl.Rd | 2
man/initialize-USL-method.Rd | 2
man/oracledb.Rd | 2
man/overhead-USL-method.Rd |only
man/peak.scalability-USL-method.Rd | 2
man/plot-USL-method.Rd | 2
man/predict-USL-method.Rd | 2
man/print-USL-method.Rd | 2
man/raytracer.Rd | 2
man/scalability-USL-method.Rd | 2
man/show-USL-method.Rd | 2
man/specsdm91.Rd | 2
man/summary-USL-method.Rd | 2
man/usl-package.Rd | 4 -
man/usl.Rd | 3 -
man/usl.solve.lm.Rd | 2
man/usl.solve.nls.Rd | 2
man/usl.solve.nlxb.Rd | 2
tests/t01.Rout.save | 6 +-
tests/t02.Rout.save | 6 +-
tests/t03.Rout.save | 4 -
tests/t04.Rout.save | 6 +-
tests/t05.Rout.save | 4 -
tests/t06.Rout.save | 4 -
tests/t07.Rout.save | 4 -
tests/t08.Rout.save | 4 -
tests/t09.Rout.save | 4 -
tests/t10.R |only
tests/t10.Rout.save |only
vignettes/usl.Rnw | 95 +++++++++++++++++++++++++++++++++++--
vignettes/usl.bib | 10 +++
47 files changed, 352 insertions(+), 119 deletions(-)
Title: Reads Mass Spectrometry Data in Bruker *flex Format
Diff between readBrukerFlexData versions 1.8 dated 2014-09-27 and 1.8.1 dated 2014-11-04
More information about readBrukerFlexData at CRAN
Description: Reads data files acquired by MALDI-TOF MS on Bruker Daltonics
machines of the *flex series.
Author: Sebastian Gibb [aut, cre]
Maintainer: Sebastian Gibb
DESCRIPTION | 10 ++++-----
MD5 | 42 +++++++++++++++++++-------------------
NAMESPACE | 2 -
NEWS | 5 ++++
R/package.R | 4 +--
R/readAcquFile-functions.R | 8 +++----
R/readBrukerFlexFile-functions.R | 11 +++------
man/changePrecision.Rd | 2 -
man/cpSpecHpcMzXml.Rd | 2 -
man/double2singlePrecision.Rd | 2 -
man/extractHPCConstants.Rd | 2 -
man/grepAcquDoubleValue.Rd | 2 -
man/grepAcquValue.Rd | 2 -
man/hpc.Rd | 2 -
man/readAcquFile.Rd | 6 ++---
man/readBrukerFlexData-defunct.Rd | 2 -
man/readBrukerFlexData-package.Rd | 6 ++---
man/readBrukerFlexDir.Rd | 2 -
man/readBrukerFlexFile.Rd | 3 +-
man/readFidFile.Rd | 2 -
man/sampleName.Rd | 2 -
man/tof2mass.Rd | 2 -
22 files changed, 62 insertions(+), 59 deletions(-)
Permanent link
Title: Three dimensional PCA plots
Diff between pca3d versions 0.2 dated 2013-03-21 and 0.3 dated 2014-11-04
Description: This package provides a function simplifying presentation of PCA models in a 3D interactive representation using rgl
Author: January Weiner
Maintainer: January Weiner
ChangeLog |only
DESCRIPTION | 11 +++++------
MD5 | 13 +++++++------
NAMESPACE | 1 +
R/helpers.R | 6 +++++-
R/pca2d.R | 21 +++++++++++++++++----
R/pca3d.R | 34 ++++++++++++++++++++++------------
man/pca3d-package.Rd | 26 ++++++++++++++++++++++----
8 files changed, 79 insertions(+), 33 deletions(-)
Title: Ordinal Regression for High-dimensional Data
Diff between ordinalgmifs versions 1.0.1 dated 2014-10-05 and 1.0.2 dated 2014-11-04
Description: This package provides a function for fitting cumulative link, adjacent category, forward and backward continuation ratio, and stereotype ordinal response models when the number of parameters exceeds the sample size, using the the generalized monotone incremental forward stagewise method.
Author: Kellie J. Archer, Jiayi Hou, Qing Zhou, Kyle Ferber, John G. Layne, Amanda Gentry
Maintainer: Kellie J. Archer
DESCRIPTION | 9
MD5 | 20 +-
R/predict.ordinalgmifs.R | 420 +++++++++++++++++++++++++-------------------
data/eyedisease.rda |binary
data/hccframe.rda |binary
data/hccmethyl.rda |binary
inst |only
man/ordinalgmifs-package.Rd | 4
vignettes |only
9 files changed, 263 insertions(+), 190 deletions(-)
Title: R Interface for lp_solve version 5.5.2.0
Diff between lpSolveAPI versions 5.5.2.0-11 dated 2014-06-27 and 5.5.2.0-12 dated 2014-11-04
Description: The lpSolveAPI package provides an R interface for lp_solve,
a Mixed Integer Linear Programming (MILP) solver with support for pure
linear, (mixed) integer/binary, semi-continuous and special ordered sets
(SOS) models.
Author: lp_solve
Maintainer: Kjell Konis
lpSolveAPI-5.5.2.0-11/lpSolveAPI/inst/include/myblas.h |only
lpSolveAPI-5.5.2.0-11/lpSolveAPI/src/lp_solve/myblas.c |only
lpSolveAPI-5.5.2.0-12/lpSolveAPI/DESCRIPTION | 12 ++---
lpSolveAPI-5.5.2.0-12/lpSolveAPI/MD5 | 22 ++++-----
lpSolveAPI-5.5.2.0-12/lpSolveAPI/src/Makevars | 2
lpSolveAPI-5.5.2.0-12/lpSolveAPI/src/Makevars.win | 2
lpSolveAPI-5.5.2.0-12/lpSolveAPI/src/lp_solve/Makefile | 6 +-
lpSolveAPI-5.5.2.0-12/lpSolveAPI/src/lp_solve/lp_LUSOL.c | 6 +-
lpSolveAPI-5.5.2.0-12/lpSolveAPI/src/lp_solve/lp_lib.c | 25 +++-------
lpSolveAPI-5.5.2.0-12/lpSolveAPI/src/lp_solve/lp_mipbb.c | 2
lpSolveAPI-5.5.2.0-12/lpSolveAPI/src/lp_solve/lp_price.c | 2
lpSolveAPI-5.5.2.0-12/lpSolveAPI/src/lp_solve/lusol.c | 6 +-
lpSolveAPI-5.5.2.0-12/lpSolveAPI/src/lp_solve/lusol1.c | 35 +++++++++------
13 files changed, 62 insertions(+), 58 deletions(-)
Title: Descriptive statistics
Diff between descr versions 1.0.3 dated 2014-08-01 and 1.0.4 dated 2014-11-04
Description: This package contains functions to describe weighted
categorical variables and functions to facilitate the character
encoding conversion of objects.
Author: Jakson Aquino. Includes R source code and/or documentation
written by Dirk Enzmann, Marc Schwartz, Nitin Jain, and Stefan
Kraft
Maintainer: Jakson Aquino
DESCRIPTION | 8 ++---
MD5 | 24 ++++++++--------
NEWS | 19 ++++++++++++
R/CrossTable.R | 39 ++++++++++++--------------
R/compmeans.R | 5 ++-
R/crosstab.R | 20 ++++++++++---
R/descr.R | 15 ++++++++++
R/labels2R.R | 79 ++++++++++++++++++++++++++++--------------------------
R/xtable.R | 18 ++++++++----
man/CrossTable.Rd | 8 ++++-
man/compmeans.Rd | 7 ++++
man/crosstab.Rd | 13 ++++++--
man/labels2R.Rd | 4 ++
13 files changed, 167 insertions(+), 92 deletions(-)
Title: Conduct Univariate and Bivariate Wavelet Analyses
Diff between biwavelet versions 0.17.3 dated 2014-03-27 and 0.17.4 dated 2014-11-04
Description: This is a port of the WTC MATLAB package written by Aslak Grinsted
and the wavelet program written by Christopher Torrence and Gibert P.
Compo. This package can be used to perform univariate and bivariate
(cross-wavelet, wavelet coherence, wavelet clustering) analyses.
Author: Tarik C. Gouhier, Aslak Grinsted
Maintainer: Tarik C. Gouhier
biwavelet-0.17.3/biwavelet/ChangeLog |only
biwavelet-0.17.4/biwavelet/DESCRIPTION | 23 +++++++++-----------
biwavelet-0.17.4/biwavelet/MD5 | 17 ++++++--------
biwavelet-0.17.4/biwavelet/R/phase.plot.R | 3 +-
biwavelet-0.17.4/biwavelet/R/plot.biwavelet.R | 2 -
biwavelet-0.17.4/biwavelet/R/wt.R | 2 -
biwavelet-0.17.4/biwavelet/data/enviro.data.RData |binary
biwavelet-0.17.4/biwavelet/inst/CITATION | 8 +++---
biwavelet-0.17.4/biwavelet/inst/NEWS.Rd | 7 ++++++
biwavelet-0.17.4/biwavelet/man/biwavelet-package.Rd | 6 ++---
10 files changed, 37 insertions(+), 31 deletions(-)
Title: SNPs Enrichment Analysis
Diff between snpEnrichment versions 1.5-0 dated 2014-09-26 and 1.6.0 dated 2014-11-04
Description: Implements classes and methods for large scale SNP enrichment analysis (e.g. SNPs associated with genes expression in a GWAS signal)
Author: Mickael Canouil [aut, cre],
Loic Yengo [ctb]
Maintainer: Mickael Canouil
ChangeLog | 155 ++++++++++--
DESCRIPTION | 16 -
MD5 | 55 ++--
NAMESPACE | 1
R/Global.R | 247 ++++++++++++++------
R/SNP.R | 8
R/chromosome.R | 38 +--
R/enrichment.R | 508 +++++++++++++++++++++++++-----------------
README.md | 80 +++---
data/toyEnrichment.RData |binary
inst/example.R | 107 +++++---
man/Chromosome-class.Rd | 5
man/EnrichSNP-class.Rd | 4
man/Enrichment-class.Rd | 25 --
man/compareEnrichment.Rd | 22 -
man/excludeSNP-methods.Rd | 26 --
man/getEnrichSNP-methods.Rd |only
man/initFiles.Rd | 5
man/is.chromosome.Rd | 2
man/is.enrichment.Rd | 3
man/plot-methods.Rd | 15 -
man/print-methods.Rd | 12
man/reSample-methods.Rd | 19 -
man/readEnrichment.Rd | 11
man/snpEnrichment-internal.Rd | 6
man/snpEnrichment-package.Rd | 95 +++----
man/toyEnrichment-dataset.Rd | 2
man/transcript-dataset.Rd | 2
man/writeLD.Rd | 5
29 files changed, 891 insertions(+), 583 deletions(-)
Title: Patient Rule Induction Method (PRIM)
Diff between prim versions 1.0.14 dated 2014-06-13 and 1.0.15 dated 2014-11-04
Description: PRIM for bump hunting in high-dimensional data
Author: Tarn Duong
Maintainer: Tarn Duong
DESCRIPTION | 11 ++++++-----
MD5 | 20 ++++++++++----------
NAMESPACE | 3 +++
R/prim.R | 10 +++++-----
build/vignette.rds |binary
inst/doc/prim-2d.pdf |binary
inst/doc/prim-3d.pdf |binary
man/plot.prim.Rd | 11 +++++++++--
man/prim-package.Rd | 8 ++++----
man/prim.S3methods.Rd | 4 ++--
man/prim.box.Rd | 6 +++---
11 files changed, 42 insertions(+), 31 deletions(-)
Title: Tools for Aquatic Sciences
Diff between marelac versions 2.1.3 dated 2014-01-07 and 2.1.4 dated 2014-11-04
Description: Datasets, constants, conversion factors, utilities for MArine, Riverine,
Estuarine, LAcustrine and Coastal science.
The package contains among others: (1) chemical and
physical constants and datasets, e.g. atomic weights, gas
constants, the earths bathymetry; (2) conversion factors
(e.g. gram to mol to liter, barometric units,
temperature, salinity); (3) physical functions, e.g. to
estimate concentrations of conservative substances, gas
transfer and diffusion coefficients, the Coriolis force
and gravity; (4) thermophysical properties of the
seawater, as from the UNESCO polynomial or from the more
recent derivation based on a Gibbs function.
Author: Karline Soetaert
Maintainer: Karline Soetaert
marelac-2.1.3/marelac/data/AtomicWeight.txt.bz2 |only
marelac-2.1.3/marelac/data/datalist |only
marelac-2.1.3/marelac/data/sw_sfac.txt.xz |only
marelac-2.1.4/marelac/DESCRIPTION | 10 ++++----
marelac-2.1.4/marelac/MD5 | 29 ++++++++++--------------
marelac-2.1.4/marelac/NAMESPACE | 21 +++++++++--------
marelac-2.1.4/marelac/R/convert_PStoAS.R | 1
marelac-2.1.4/marelac/R/molweight.R | 2 -
marelac-2.1.4/marelac/R/redfield.R | 2 -
marelac-2.1.4/marelac/build/vignette.rds |binary
marelac-2.1.4/marelac/data/AtomicWeight.rda |binary
marelac-2.1.4/marelac/data/Bathymetry.rda |binary
marelac-2.1.4/marelac/data/Constants.rda |binary
marelac-2.1.4/marelac/data/Oceans.rda |binary
marelac-2.1.4/marelac/data/sw_sfac.rda |binary
marelac-2.1.4/marelac/inst/doc/marelac.pdf |binary
marelac-2.1.4/marelac/man/marelac.Rd | 4 +--
17 files changed, 35 insertions(+), 34 deletions(-)
Title: Data supporting the VGAM package
Diff between VGAMdata versions 0.9-4 dated 2014-05-28 and 0.9-5 dated 2014-11-04
Description: Data sets to accompany the VGAM package.
These are used to illustrate vector generalized
linear and additive models (VGLMs/VGAMs), and associated models
(Reduced-Rank VGLMs, Quadratic RR-VGLMs, Row-Column
Interaction Models, and constrained and unconstrained ordination
models in ecology.
Author: Thomas W. Yee
Maintainer: Thomas Yee
DESCRIPTION | 10 +-
MD5 | 70 ++++++++++----------
NEWS | 17 ++++
data/bb.de.rda |binary
data/belcap.rda |binary
data/crashf.au.rda |binary
data/crime.us.rda |binary
data/datalist | 1
data/exam1.rda |binary
data/fibre15.rda |binary
data/fibre1dot5.rda |binary
data/gala.rda |binary
data/hued.rda |binary
data/huie.rda |binary
data/huse.rda |binary
data/oly12.rda |binary
data/prison.us.rda |binary
data/profs.nz.rda |binary
data/rainfall.rda |binary
data/rugby.rda |binary
data/rugby.ties.rda |binary
data/students.tw.rda |binary
data/trapO.rda |binary
data/ugss.rda |binary
data/vtinpat.rda |only
data/wffc.indiv.rda |binary
data/wffc.nc.rda |binary
data/wffc.rda |binary
data/wffc.teams.rda |binary
data/xs.nz.rda |binary
man/belcap.Rd | 4 -
man/exam1.Rd | 4 -
man/profs.nz.Rd | 48 ++++++-------
man/vtinpat.Rd |only
man/wffc.P2star.Rd | 2
man/wffc.Rd | 4 -
man/xs.nz.Rd | 177 ++++++++++++++++++++++++++++++++++++---------------
37 files changed, 218 insertions(+), 119 deletions(-)
Title: SNP-set (Sequence) Kernel Association Test
Diff between SKAT versions 1.0 dated 2014-10-31 and 1.0.1 dated 2014-11-04
Description: SKAT is a kernel regression based association test between a set of single nucleotide polymorphism (SNP) and dichotomous or quantitative phenotypes. SKAT aggregates individual score test statistics of SNPs in a SNP set and efficiently computes SNP-set level p-values, while adjusting for covariates, such as principal components to account for population stratification.
Author: Seunggeun (Shawn) Lee, with contributions from Larisa Miropolsky and Michael Wu
Maintainer: Seunggeun (Shawn) Lee
DESCRIPTION | 8 ++--
MD5 | 12 +++---
R/Binary_MAIN.R | 83 ++++++++++++++++++++++++--------------------
inst/doc/SKAT.pdf |binary
man/SKATBinary.rd | 4 ++
man/SKATBinary_Single.rd | 5 ++
src/Binary_ComputeExact.cpp | 4 +-
7 files changed, 68 insertions(+), 48 deletions(-)
Title: Sparse group lasso generic optimizer
Diff between sglOptim versions 1.0.122.0 dated 2014-03-24 and 1.0.122.1 dated 2014-11-04
Description: Fast generic solver for sparse group lasso optimization problems.
The loss (objective) function must be defined in a C++ module. This package
apply template metaprogramming techniques, therefore -- when compiling the
package from source -- a high level of optimization is needed to gain full
speed (e.g. for the GCC compiler use -O3). Use of multiple processors for
cross validation and subsampling is supported through OpenMP. The Armadillo
C++ library is used as the primary linear algebra engine. (The sglOptim
package version a.b.c.d is interpreted as follows: a - primary
version, b - major updates and fixes, c - source revision as corresponding
to R-Forge, d - minor fixes made only to the CRAN
branch of the source)
Author: Martin Vincent
Maintainer: Martin Vincent
DESCRIPTION | 7 +++----
MD5 | 6 +++---
inst/include/sgl.h | 5 +++--
src/only_for_testing.cpp | 6 ++----
4 files changed, 11 insertions(+), 13 deletions(-)
Title: R Interface to the Pushbullet Messaging Service
Diff between RPushbullet versions 0.1.0 dated 2014-10-10 and 0.1.1 dated 2014-11-04
Description: This package provides an easy-to-use interface for the
Pushbullet messaging service which provides fast and efficient notifications
(and file transfer) between computers, phones and tablets. An account has
to be registered at the site http://www.pushbullet.com site to obtain a
(free) API key.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel
ChangeLog | 12 ++++++++++++
DESCRIPTION | 21 +++++++++++----------
MD5 | 10 +++++-----
R/init.R | 2 +-
R/pushes.R | 5 +----
README.md | 15 ++++++++++-----
6 files changed, 40 insertions(+), 25 deletions(-)
Title: the Calculation and Application of p-variation
Diff between pvar versions 1.0.9 dated 2013-12-11 and 2.0 dated 2014-11-04
Description: The calculation of p-variation of the finite sample data
Author: Vygantas Butkus
Maintainer: Vygantas Butkus
pvar-1.0.9/pvar/man/ChangePointsId.Rd |only
pvar-1.0.9/pvar/man/DropMidAll.Rd |only
pvar-1.0.9/pvar/man/FindAnalysingPoints.Rd |only
pvar-1.0.9/pvar/man/MovingSum.Rd |only
pvar-1.0.9/pvar/man/PvarExtraFun.Rd |only
pvar-1.0.9/pvar/man/PvarExtraFun_dev.Rd |only
pvar-1.0.9/pvar/man/PvarQuantile.Rd |only
pvar-1.0.9/pvar/man/SplitByExtremum.Rd |only
pvar-1.0.9/pvar/man/generators.Rd |only
pvar-1.0.9/pvar/man/pvarPseudoMonotonic.Rd |only
pvar-2.0/pvar/DESCRIPTION | 18
pvar-2.0/pvar/MD5 | 61 -
pvar-2.0/pvar/NAMESPACE | 58 -
pvar-2.0/pvar/R/PvarBreakTest.R | 598 +++++++-----
pvar-2.0/pvar/R/RcppExports.R |only
pvar-2.0/pvar/R/data.R |only
pvar-2.0/pvar/R/extra-functions.R |only
pvar-2.0/pvar/R/p-variation.R | 1296 ++++++---------------------
pvar-2.0/pvar/R/pvar-package.R |only
pvar-2.0/pvar/R/test-functions.R |only
pvar-2.0/pvar/README.md |only
pvar-2.0/pvar/build |only
pvar-2.0/pvar/inst |only
pvar-2.0/pvar/man/AddPvar.Rd |only
pvar-2.0/pvar/man/AddPvarC.Rd |only
pvar-2.0/pvar/man/BridgeT.Rd | 111 +-
pvar-2.0/pvar/man/ChangePoints.Rd |only
pvar-2.0/pvar/man/ConcatenateStrings.Rd | 74 -
pvar-2.0/pvar/man/DataSets.Rd | 77 -
pvar-2.0/pvar/man/IsEqualPvar.Rd |only
pvar-2.0/pvar/man/ProcessGenerators.Rd |only
pvar-2.0/pvar/man/PvarBreakTest.Rd | 249 ++---
pvar-2.0/pvar/man/StatisticsPvarBreakTest.Rd |only
pvar-2.0/pvar/man/Sum_p.Rd | 80 -
pvar-2.0/pvar/man/pvar-package.Rd | 221 +---
pvar-2.0/pvar/man/pvar.Rd | 298 +-----
pvar-2.0/pvar/man/pvarC.Rd |only
pvar-2.0/pvar/src |only
pvar-2.0/pvar/tests |only
pvar-2.0/pvar/vignettes |only
40 files changed, 1169 insertions(+), 1972 deletions(-)
Title: Efficient authenticated interaction with the O*NET API.
Diff between ONETr versions 1.0 dated 2014-09-13 and 1.0.1 dated 2014-11-04
Description: This package provides a series of functions designed to enable users to easily search and interact with occupational data from the O*NET API
Author: Eric Knudsen
Maintainer: Eric Knudsen
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
R/keySearch.R | 4 ++--
R/socSearch.R | 6 +++---
README.md | 6 +++---
man/setCreds.Rd | 6 +++---
6 files changed, 20 insertions(+), 20 deletions(-)
Title: geometric morphometric analyses of 2d/3d landmark data
Diff between geomorph versions 2.1.1 dated 2014-07-19 and 2.1.2 dated 2014-11-04
Description: Read, manipulate, and digitize landmark data, generate shape
variables via Procrustes analysis for points, curves and surfaces, perform
shape analyses, and provide graphical depictions of shapes and patterns of
shape variation
Author: Dean Adams, Michael Collyer, Erik Otarola-Castillo, Emma Sherratt
Maintainer: Dean Adams
DESCRIPTION | 10
MD5 | 164 ++++++++-------
NAMESPACE | 4
NEWS | 33 +++
R/advanced.procD.lm.r |only
R/arrayspecs.r | 2
R/compare.evol.rates.r | 2
R/compare.modular.partitions.r | 12 -
R/digitize2d.r | 310 ++++++++++++++---------------
R/geomorph.support.code.r | 394 ++++++++++++++++++++++++++++++--------
R/gpagen.r | 8
R/pairwise.slope.test.r | 357 +++++++++-------------------------
R/pairwiseD.test.r | 239 ++++++++---------------
R/phylo.pls.R | 8
R/physignal.r | 2
R/plotAllometry.r | 26 +-
R/plotRefToTarget.r | 45 +++-
R/procD.lm.r | 164 ++++-----------
R/procD.pgls.r | 164 ++++++++-------
R/two.b.pls.r | 122 ++++++-----
R/warpRefOutline.R |only
R/writeland.tps.r | 2
data/hummingbirds.rda |binary
data/mosquito.rda |binary
data/motionpaths.rda |binary
data/plethShapeFood.rda |binary
data/plethodon.rda |binary
data/plethspecies.rda |binary
data/pupfish.rda |only
data/ratland.rda |binary
data/scallopPLY.rda |binary
data/scallops.rda |binary
man/advanced.procD.lm.Rd |only
man/arrayspecs.Rd | 2
man/bilat.symmetry.Rd | 2
man/buildtemplate.Rd | 2
man/compare.evol.rates.Rd | 4
man/compare.modular.partitions.Rd | 14 -
man/define.modules.Rd | 2
man/define.sliders.2d.Rd | 2
man/define.sliders.3d.Rd | 2
man/digit.fixed.Rd | 2
man/digitize2d.Rd | 4
man/digitsurface.Rd | 2
man/editTemplate.Rd | 2
man/estimate.missing.Rd | 2
man/findMeanSpec.Rd | 2
man/fixed.angle.Rd | 2
man/geomorph-package.Rd | 2
man/gpagen.Rd | 10
man/hummingbirds.Rd | 2
man/morphol.disparity.Rd | 2
man/morphol.integr.Rd | 2
man/mosquito.Rd | 2
man/motionpaths.Rd | 2
man/mshape.Rd | 2
man/pairwise.slope.test.Rd | 80 ++++---
man/pairwiseD.test.Rd | 60 +++--
man/phylo.pls.Rd | 2
man/physignal.Rd | 4
man/plethShapeFood.Rd | 2
man/plethodon.Rd | 2
man/plethspecies.Rd | 2
man/plotAllSpecimens.Rd | 2
man/plotAllometry.Rd | 4
man/plotGMPhyloMorphoSpace.Rd | 2
man/plotRefToTarget.Rd | 34 +--
man/plotTangentSpace.Rd | 10
man/plotspec.Rd | 2
man/procD.lm.Rd | 21 +-
man/procD.pgls.Rd | 36 ++-
man/pupfish.Rd |only
man/ratland.Rd | 2
man/read.morphologika.Rd | 2
man/read.ply.Rd | 2
man/readland.nts.Rd | 2
man/readland.tps.Rd | 2
man/readmulti.nts.Rd | 2
man/scallopPLY.Rd | 2
man/scallops.Rd | 2
man/trajectory.analysis.Rd | 6
man/two.b.pls.Rd | 14 -
man/two.d.array.Rd | 2
man/warpRefMesh.Rd | 2
man/warpRefOutline.Rd |only
man/writeland.tps.Rd | 2
86 files changed, 1283 insertions(+), 1160 deletions(-)
Title: Feature significance for multivariate kernel density estimation
Diff between feature versions 1.2.10 dated 2013-11-18 and 1.2.11 dated 2014-11-04
Description: Feature significance for multivariate kernel density estimation
Author: Tarn Duong
Maintainer: Tarn Duong
DESCRIPTION | 11 ++++++-----
MD5 | 17 +++++++++--------
NAMESPACE | 6 +++++-
build |only
data/earthquake.RData |binary
inst/doc/feature.pdf |binary
man/SiZer.Rd | 14 ++++++--------
man/featureSignif.Rd | 11 ++++-------
man/featureSignifGUI.Rd | 18 +++++++++---------
man/plot.fs.Rd | 32 ++++++++++++++------------------
10 files changed, 53 insertions(+), 56 deletions(-)
Title: Cross-Validated Area Under the ROC Curve Confidence Intervals
Diff between cvAUC versions 1.0-0 dated 2013-01-15 and 1.0.1 dated 2014-11-04
Description: This package contains various tools for working with and evaluating cross-validated area under the ROC curve (AUC) estimators. The primary functions of the package are ci.cvAUC and ci.pooled.cvAUC, which report cross-validated AUC and compute confidence intervals for cross-validated AUC estimates based on influence curves for i.i.d. and pooled repeated measures data, respectively. One benefit to using influence curve based confidence intervals is that they require much less computation time than bootstrapping methods. The utility functions, AUC and cvAUC, are simple wrappers for functions from the ROCR package.
Author: Erin LeDell, Maya Petersen, Mark van der Laan
Maintainer: Erin LeDell
cvAUC-1.0-0/cvAUC/R/covProb.sim.R |only
cvAUC-1.0-0/cvAUC/man/covProb.sim.Rd |only
cvAUC-1.0.1/cvAUC/DESCRIPTION | 22 ++++++----------------
cvAUC-1.0.1/cvAUC/MD5 | 23 ++++++++++++-----------
cvAUC-1.0.1/cvAUC/NEWS | 25 +++++++++++++++++++++----
cvAUC-1.0.1/cvAUC/R/AUC.R |only
cvAUC-1.0.1/cvAUC/R/ci.cvAUC.R | 10 ++++------
cvAUC-1.0.1/cvAUC/R/ci.pooled.cvAUC.R | 27 +++++++++++++--------------
cvAUC-1.0.1/cvAUC/R/cvAUC.R | 15 +++++++--------
cvAUC-1.0.1/cvAUC/R/internals.R | 1 -
cvAUC-1.0.1/cvAUC/R/zzz.R |only
cvAUC-1.0.1/cvAUC/man/AUC.Rd |only
cvAUC-1.0.1/cvAUC/man/ci.cvAUC.Rd | 2 +-
cvAUC-1.0.1/cvAUC/man/ci.pooled.cvAUC.Rd | 6 +++---
cvAUC-1.0.1/cvAUC/man/cvAUC.Rd | 12 +++++++++---
15 files changed, 76 insertions(+), 67 deletions(-)
Title: Linear regression based on linear structure between covariates
Diff between CorReg versions 0.15.7 dated 2014-10-02 and 0.15.8 dated 2014-11-04
Description: Linear regression based on a recursive structural equation model
(explicit correlations) found by a MCMC algorithm. It permits to face
highly correlated covariates. Variable selection is included (by lasso,
elasticnet, etc.). It also provides some graphical tools for basic
statistics.
Author: Clement THERY [aut, cre],
Christophe BIERNACKI [ctb],
Gaetan LORIDANT [ctb],
Florian WATRIN [ctb],
Quentin GRIMONPREZ [ctb],
Vincent KUBICKI [ctb],
Samuel BLANCK [ctb],
Jeremie KELLNER [ctb]
Maintainer: Clement THERY
CorReg-0.15.7/CorReg/R/searchZ.R |only
CorReg-0.15.7/CorReg/man/searchZ.Rd |only
CorReg-0.15.8/CorReg/DESCRIPTION | 22 ++++++-------
CorReg-0.15.8/CorReg/MD5 | 30 ++++++++---------
CorReg-0.15.8/CorReg/NAMESPACE | 6 ---
CorReg-0.15.8/CorReg/R/A_clere.R | 3 +
CorReg-0.15.8/CorReg/R/CorReg-package.R | 12 +++----
CorReg-0.15.8/CorReg/R/correg.R | 21 ++++++------
CorReg-0.15.8/CorReg/R/density_estimation.R | 42 ++++++++++++++++++++-----
CorReg-0.15.8/CorReg/R/fillmiss.R | 21 ++++++++----
CorReg-0.15.8/CorReg/R/matplot_zone.R | 10 ++---
CorReg-0.15.8/CorReg/R/structureFinder.R |only
CorReg-0.15.8/CorReg/man/CorReg-package.Rd | 14 ++++----
CorReg-0.15.8/CorReg/man/R2Z.Rd | 4 +-
CorReg-0.15.8/CorReg/man/density_estimation.Rd | 8 ++--
CorReg-0.15.8/CorReg/man/fillmiss.Rd | 7 ++--
CorReg-0.15.8/CorReg/man/matplot_zone.Rd | 8 +---
CorReg-0.15.8/CorReg/man/structureFinder.Rd |only
18 files changed, 121 insertions(+), 87 deletions(-)