Title: Weighted Scores Method for Regression Models with Dependent Data
Diff between weightedScores versions 0.9 dated 2011-10-01 and 0.9.1 dated 2014-11-06
More information about weightedScores at CRAN
Description: Has functions that handle the steps for the weighted scores method in Nikoloulopoulos, Joe and Chaganty (2011, Biostatistics, 12: 653-665) for binary (logistic and probit), Poisson and negative binomial regression, with dependent data. Two versions of negative binomial regression from Cameron and Trivedi (1998) are used. Let NB(tau,xi) be a parametrization with probability mass function f(y; tau, xi) = Gamma(tau + y) xi^y / [ Gamma(tau) y! (1 + xi)^( tau + y )], for y = 0, 1, 2, ... , tau > 0 , xi > 0, with mean mu = tau*xi = exp(beta^T x) and variance tau*xi*(1 + xi), where x is a vector of covariates. For NB1, the parameter gamma is defined so that tau=mu/gamma, xi=gamma; for NB2, the parameter gamma is defined so that tau=1/gamma, xi=mu*gamma. In NB1, the convolution parameter tau is a function of the covariate x and xi is constant; in NB2, the convolution parameter tau is constant and xi is a function of the covariate x.
Author: A. K. Nikoloulopoulos
Maintainer: Aristidis K. Nikoloulopoulos
weightedScores-0.9.1/weightedScores/DESCRIPTION | 31
weightedScores-0.9.1/weightedScores/MD5 | 37
weightedScores-0.9.1/weightedScores/R/wtsc-all.r | 2224 ++++++++--------
weightedScores-0.9.1/weightedScores/man/childvisit.rd | 6
weightedScores-0.9.1/weightedScores/man/cl1.Rd | 4
weightedScores-0.9.1/weightedScores/man/godambe.Rd | 6
weightedScores-0.9.1/weightedScores/man/iee.Rd | 4
weightedScores-0.9.1/weightedScores/man/solvewtsc.Rd | 4
weightedScores-0.9.1/weightedScores/man/toenail.rd | 60
weightedScores-0.9.1/weightedScores/man/weightMat.Rd | 13
weightedScores-0.9.1/weightedScores/man/wtsc.wrapper.Rd | 23
weightedScores-0.9.1/weightedScores/tests |only
weightedScores-0.9/weightedScores/testing |only
13 files changed, 1182 insertions(+), 1230 deletions(-)
Permanent link
Title: Perform SQL Selects on R Data Frames
Diff between sqldf versions 0.4-9 dated 2014-10-27 and 0.4-10 dated 2014-11-06
Description: Description: Manipulate R data frames using SQL.
Author: G. Grothendieck
Maintainer: G. Grothendieck
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
R/sqldf.R | 11 ++++-------
inst/NEWS | 4 ++++
man/read.csv.sql.Rd | 7 ++-----
man/sqldf.Rd | 30 ++++++++++--------------------
6 files changed, 29 insertions(+), 41 deletions(-)
Title: Interface to the Global Biodiversity Information Facility API
Diff between rgbif versions 0.7.0 dated 2014-07-31 and 0.7.7 dated 2014-11-06
Description: A programmatic interface to the Web Service methods
provided by the Global Biodiversity Information Facility (GBIF).
GIBF is a database of species occurrence records from sources all
over the globe. rgbif includes functions for searching for
taxonomic names, retrieving information on data providers,
getting species occurrence records, and getting counts of
occurrence records.
Author: Scott Chamberlain [aut, cre],
Karthik Ram [aut],
Vijay Barve [aut],
Dan Mcglinn [aut]
Maintainer: Scott Chamberlain
rgbif-0.7.0/rgbif/R/deprecated.r |only
rgbif-0.7.0/rgbif/inst/doc/rgbif_vignette_oldapi.Rmd |only
rgbif-0.7.0/rgbif/inst/doc/rgbif_vignette_oldapi.html |only
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rgbif-0.7.7/rgbif/DESCRIPTION | 28
rgbif-0.7.7/rgbif/MD5 | 251 ++--
rgbif-0.7.7/rgbif/NAMESPACE | 56
rgbif-0.7.7/rgbif/NEWS | 41
rgbif-0.7.7/rgbif/R/dataset_metrics.r | 29
rgbif-0.7.7/rgbif/R/dataset_search.r | 51
rgbif-0.7.7/rgbif/R/dataset_suggest.r | 92 -
rgbif-0.7.7/rgbif/R/datasets.r | 44
rgbif-0.7.7/rgbif/R/defunct.R |only
rgbif-0.7.7/rgbif/R/elevation.r | 51
rgbif-0.7.7/rgbif/R/gbif_names.R |only
rgbif-0.7.7/rgbif/R/gbif_photos.r | 19
rgbif-0.7.7/rgbif/R/gbifmap.r | 24
rgbif-0.7.7/rgbif/R/globals.r | 4
rgbif-0.7.7/rgbif/R/installations.r | 72 -
rgbif-0.7.7/rgbif/R/name_backbone.r | 26
rgbif-0.7.7/rgbif/R/name_lookup.r | 111 +
rgbif-0.7.7/rgbif/R/name_suggest.r | 20
rgbif-0.7.7/rgbif/R/name_usage.r | 33
rgbif-0.7.7/rgbif/R/networks.r | 69 -
rgbif-0.7.7/rgbif/R/nodes.r | 69 -
rgbif-0.7.7/rgbif/R/occ_count.r | 40
rgbif-0.7.7/rgbif/R/occ_get.r | 32
rgbif-0.7.7/rgbif/R/occ_issues.r |only
rgbif-0.7.7/rgbif/R/occ_issues_lookup.r |only
rgbif-0.7.7/rgbif/R/occ_metadata.r | 37
rgbif-0.7.7/rgbif/R/occ_search.r | 159 +-
rgbif-0.7.7/rgbif/R/organizations.r | 89 +
rgbif-0.7.7/rgbif/R/parsenames.R | 34
rgbif-0.7.7/rgbif/R/rgbif-package.r | 98 -
rgbif-0.7.7/rgbif/R/startup.r | 4
rgbif-0.7.7/rgbif/R/zzz.r | 225 ++-
rgbif-0.7.7/rgbif/README.md | 41
rgbif-0.7.7/rgbif/build/vignette.rds |binary
rgbif-0.7.7/rgbif/data/occ_fields.rda |only
rgbif-0.7.7/rgbif/inst/assets/img/gbifmap.png |binary
rgbif-0.7.7/rgbif/inst/doc/issues_vignette.Rmd |only
rgbif-0.7.7/rgbif/inst/doc/issues_vignette.html |only
rgbif-0.7.7/rgbif/inst/doc/rgbif_vignette.html | 944 +++++++---------
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rgbif-0.7.7/rgbif/inst/vign/rgbif_vignette.Rmd | 119 +-
rgbif-0.7.7/rgbif/inst/vign/rgbif_vignette.md | 897 +++++++--------
rgbif-0.7.7/rgbif/man/blanktheme.Rd | 2
rgbif-0.7.7/rgbif/man/check_wkt.Rd | 2
rgbif-0.7.7/rgbif/man/commas_to_periods.Rd | 2
rgbif-0.7.7/rgbif/man/count_facet.Rd | 2
rgbif-0.7.7/rgbif/man/create_gist.Rd |only
rgbif-0.7.7/rgbif/man/dataset_metrics.Rd | 16
rgbif-0.7.7/rgbif/man/dataset_search.Rd | 42
rgbif-0.7.7/rgbif/man/dataset_suggest.Rd | 55
rgbif-0.7.7/rgbif/man/datasetparser.Rd | 2
rgbif-0.7.7/rgbif/man/datasets.Rd | 30
rgbif-0.7.7/rgbif/man/density_spplist.Rd |only
rgbif-0.7.7/rgbif/man/densitylist.Rd |only
rgbif-0.7.7/rgbif/man/elevation.Rd | 15
rgbif-0.7.7/rgbif/man/gbif_bbox2wkt.Rd | 2
rgbif-0.7.7/rgbif/man/gbif_capwords.Rd | 2
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rgbif-0.7.7/rgbif/man/gbifparser.Rd | 2
rgbif-0.7.7/rgbif/man/gbifparser_verbatim.Rd | 2
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rgbif-0.7.7/rgbif/man/installations.Rd | 41
rgbif-0.7.7/rgbif/man/isocodes.Rd | 2
rgbif-0.7.7/rgbif/man/ldfast.Rd | 2
rgbif-0.7.7/rgbif/man/name_backbone.Rd | 30
rgbif-0.7.7/rgbif/man/name_lookup.Rd | 101 +
rgbif-0.7.7/rgbif/man/name_suggest.Rd | 28
rgbif-0.7.7/rgbif/man/name_usage.Rd | 59 -
rgbif-0.7.7/rgbif/man/namelkupparser.Rd | 2
rgbif-0.7.7/rgbif/man/networks.Rd | 60 -
rgbif-0.7.7/rgbif/man/nodes.Rd | 59 -
rgbif-0.7.7/rgbif/man/occ_count.Rd | 32
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rgbif-0.7.7/rgbif/man/occ_metadata.Rd | 19
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rgbif-0.7.7/rgbif/man/type_sum.Rd | 2
rgbif-0.7.7/rgbif/man/typestatus.Rd | 2
rgbif-0.7.7/rgbif/tests/testthat/test-dataset_metrics.r | 4
rgbif-0.7.7/rgbif/tests/testthat/test-dataset_search.r | 6
rgbif-0.7.7/rgbif/tests/testthat/test-dataset_suggest.r | 4
rgbif-0.7.7/rgbif/tests/testthat/test-datasets.r | 30
rgbif-0.7.7/rgbif/tests/testthat/test-installations.r | 28
rgbif-0.7.7/rgbif/tests/testthat/test-name_backbone.r | 4
rgbif-0.7.7/rgbif/tests/testthat/test-name_lookup.r | 6
rgbif-0.7.7/rgbif/tests/testthat/test-name_suggest.r | 10
rgbif-0.7.7/rgbif/tests/testthat/test-name_usage.r | 6
rgbif-0.7.7/rgbif/tests/testthat/test-nodes.r | 28
rgbif-0.7.7/rgbif/tests/testthat/test-occ_get.r | 10
rgbif-0.7.7/rgbif/tests/testthat/test-occ_search.r | 10
rgbif-0.7.7/rgbif/tests/testthat/test-organizations.r | 18
rgbif-0.7.7/rgbif/vignettes/figure/gbifmap1.png |binary
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rgbif-0.7.7/rgbif/vignettes/rgbif_vignette.Rmd | 873 ++++++--------
165 files changed, 3021 insertions(+), 2763 deletions(-)
Title: Package for Nonparametric Statistical Methods using R
Diff between npsm versions 0.01 dated 2014-08-04 and 0.5 dated 2014-11-06
Description: Functions and datasets used in the book Nonparametric Statistical Methods Using R.
Author: John Kloke, Joseph McKean
Maintainer: John Kloke
DESCRIPTION | 13 ++++----
MD5 | 72 ++++++++++++++++++++++++++++++++++++++++++-------
NAMESPACE | 4 --
R/aligned.test.r | 2 -
R/centerx.r |only
R/cor.boot.ci.r | 5 ++-
R/fk.test.R |only
R/fkk.test.r |only
R/fp.test.r |only
R/jonckheere.R |only
R/polydeg.R |only
R/racov.r |only
R/rank.test.r | 2 -
R/vanElteren.test.r |only
README.md |only
data/SCUD.rda |only
data/cancertrt.rda |only
data/cloud.rda |only
data/energy.rda |only
data/hodgkins.rda |only
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data/poly.rda |only
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data/rs.rda |only
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data/weather.rda |only
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64 files changed, 87 insertions(+), 25 deletions(-)
Title: The Hypergeometric Function
Diff between hypergeo versions 1.2-5 dated 2013-12-09 and 1.2-9 dated 2014-11-06
Description: The hypergeometric function, hypergeo(), for complex numbers
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin
DESCRIPTION | 12 -
MD5 | 28 +-
NAMESPACE | 2
R/hypergeo.R | 462 ++++++++++++++++++++++++++++++++++-------------
build |only
inst/doc |only
man/buhring.Rd |only
man/f15.3.1.Rd | 24 +-
man/hypergeo.Rd | 6
man/hypergeo_contfrac.Rd | 4
man/hypergeo_cover1.Rd | 7
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man/is.nonpos.Rd | 39 +++
man/shanks.Rd |only
tests/aaa.R | 10 -
vignettes |only
17 files changed, 440 insertions(+), 154 deletions(-)
Title: Circular Visualization in R
Diff between circlize versions 0.1.2 dated 2014-10-13 and 0.1.3 dated 2014-11-06
Description: This package implements circular visualization
(http://circos.ca/) in R. Due to the natural born feature of R to draw statistical
graphics, this package can provide a more general and flexible way to
visualize huge information in a circular style.
Author: Zuguang Gu
Maintainer: Zuguang Gu
DESCRIPTION | 14 +-
MD5 | 142 +++++++++++------------
NAMESPACE | 103 ++++++++--------
NEWS | 32 +++--
R/chordDiagram.R | 76 ++++++++----
R/genomic.R | 27 ++--
R/genomic_utils.R | 26 +++-
R/global.R | 13 +-
R/utils.R | 7 -
R/zzz.R |only
build/vignette.rds |binary
inst/doc/circlize.pdf |binary
inst/doc/circular_phylogenetic_tree.pdf |binary
inst/doc/circular_view_of_tables.R | 39 ++++++
inst/doc/circular_view_of_tables.Rnw | 52 ++++++++
inst/doc/circular_view_of_tables.pdf |binary
inst/doc/draw_ideogram.pdf |binary
inst/doc/genomic_plot.R | 22 +--
inst/doc/genomic_plot.Rnw | 17 +-
inst/doc/genomic_plot.pdf |binary
inst/doc/interesting_graphics.pdf |binary
man/chordDiagram.rd | 110 +++++++++--------
man/circlize-package.rd | 116 +++++++++---------
man/circlize.rd | 80 +++++-------
man/circos.axis.rd | 106 ++++++++---------
man/circos.clear.rd | 50 ++++----
man/circos.genomicDensity.rd | 88 +++++++-------
man/circos.genomicInitialize.rd | 84 ++++++-------
man/circos.genomicLines.rd | 106 ++++++++---------
man/circos.genomicLink.rd | 104 ++++++++--------
man/circos.genomicPoints.rd | 84 ++++++-------
man/circos.genomicPosTransformLines.rd | 84 ++++++-------
man/circos.genomicRainfall.rd | 80 ++++++------
man/circos.genomicRect.rd | 94 +++++++--------
man/circos.genomicText.rd | 102 ++++++++--------
man/circos.genomicTrackPlotRegion.rd | 90 +++++++-------
man/circos.info.rd | 68 +++++------
man/circos.initialize.rd | 82 ++++++-------
man/circos.initializeWithIdeogram.rd | 92 +++++++-------
man/circos.lines.rd | 102 ++++++++--------
man/circos.link.rd | 124 ++++++++++----------
man/circos.par.rd | 90 +++++++-------
man/circos.points.rd | 82 ++++++-------
man/circos.polygon.rd | 78 ++++++------
man/circos.rect.rd | 82 ++++++-------
man/circos.text.rd | 92 +++++++-------
man/circos.trackHist.rd | 100 ++++++++--------
man/circos.trackLines.rd | 94 +++++++--------
man/circos.trackPlotRegion.rd | 120 +++++++++----------
man/circos.trackPoints.rd | 76 ++++++------
man/circos.trackText.rd | 86 ++++++-------
man/circos.updatePlotRegion.rd | 72 +++++------
man/colorRamp2.rd | 74 +++++------
man/cytoband.col.rd | 60 ++++-----
man/draw.sector.rd | 78 ++++++------
man/generateRandomBed.rd | 66 +++++-----
man/genomicDensity.rd | 74 +++++------
man/get.all.sector.index.rd | 52 ++++----
man/get.all.track.index.rd | 46 +++----
man/get.cell.meta.data.rd | 112 +++++++++---------
man/get.current.chromosome.rd | 52 ++++----
man/getI.rd | 62 +++++-----
man/highlight.chromosome.rd | 80 ++++++------
man/posTransform.default.rd | 66 +++++-----
man/posTransform.text.rd | 68 +++++------
man/rainfallTransform.rd | 62 +++++-----
man/read.cytoband.rd | 90 +++++++-------
man/reverse.circlize.rd | 72 +++++------
man/show.index.rd | 46 +++----
vignettes/circular_view_of_tables.Rnw | 52 ++++++++
vignettes/genomic_plot.Rnw | 17 +-
vignettes/src/chordDiagram-06-misc.R |only
vignettes/src/genomic-07-posTransformLinesText.R | 6
73 files changed, 2422 insertions(+), 2201 deletions(-)
Title: Tag Clouds
Diff between tagcloud versions 0.4 dated 2014-11-02 and 0.5 dated 2014-11-06
Description: Tag and Word Clouds
Author: January Weiner
Maintainer: January Weiner
DESCRIPTION | 9 -
MD5 | 17 +-
NEWS |only
R/plot.tagcloud.R | 42 ++++--
R/smoothPalette.R | 2
R/tagcloud.R | 360 ++++++++++++++++++++++++++++++------------------------
build |only
inst |only
man/tagcloud.Rd | 21 ++-
vignettes |only
10 files changed, 270 insertions(+), 181 deletions(-)
Title: Nonlinear root finding, equilibrium and steady-state analysis of
ordinary differential equations
Diff between rootSolve versions 1.6.5 dated 2014-01-08 and 1.6.5.1 dated 2014-11-06
Description: Routines to find the root of nonlinear functions, and to perform steady-state and equilibrium analysis of ordinary differential equations (ODE).
Includes routines that: (1) generate gradient and Jacobian matrices (full and banded),
(2) find roots of non-linear equations by the Newton-Raphson method,
(3) estimate steady-state conditions of a system of (differential) equations in full, banded or sparse form, using the Newton-Raphson method, or by dynamically running,
(4) solve the steady-state conditions for uni-and multicomponent 1-D, 2-D, and 3-D partial differential equations, that have been converted to ODEs
by numerical differencing (using the method-of-lines approach).
Includes fortran code.
Author: Karline Soetaert [aut, cre],
yale sparse matrix package authors [cph]
Maintainer: Karline Soetaert
DESCRIPTION | 16 +++---
MD5 | 20 +++----
R/Utilities.R | 6 ++
R/multiroot.R | 135 ++++++++++++++++++++++++++++++++++++++-------------
R/runsteady.R | 50 ++++++++++++++----
R/stode.R | 52 ++++++++++++++-----
R/stodes.R | 36 ++++++++++---
build/vignette.rds |binary
man/multiroot.1D.Rd | 8 ++-
man/multiroot.Rd | 25 ++++++++-
src/call_runsteady.c | 4 +
11 files changed, 266 insertions(+), 86 deletions(-)
Title: Raw Accelerometer Data Analysis
Diff between GGIR versions 1.1-3 dated 2014-10-21 and 1.1-4 dated 2014-11-06
Description: A tool to process and analyse data collected
with wearable raw acceleration sensors. The package has been developed and
tested for binary data from GENEActiv and GENEA devices and .csv-export data
from Actigraph devices. These devices are currently widely used in research on
human daily physical activity
Author: Vincent T van Hees [aut, cre],
Zhou Fang [ctb],
Jing Hua Zhao [ctb],
Severine Sabia [ctb]
Maintainer: Vincent T van Hees
DESCRIPTION | 8 +++---
MD5 | 18 +++++++--------
R/g.getmeta.R | 62 ++++++++++------------------------------------------
R/g.inspectfile.R | 4 +--
R/g.metric.R | 15 +++++++++---
R/g.part1.R | 4 +--
R/g.shell.GGIR.R | 4 +--
inst/NEWS.Rd | 21 +++++++++++------
man/GGIR-package.Rd | 4 +--
man/g.shell.GGIR.Rd | 2 -
10 files changed, 59 insertions(+), 83 deletions(-)
Title: Character string processing facilities
Diff between stringi versions 0.2-5 dated 2014-05-16 and 0.3-1 dated 2014-11-06
Description: stringi allows for fast, correct, consistent, portable,
and convenient character string/text processing in every locale
and any native encoding. Owing to the use of the ICU library,
the package provides R users with platform-independent functions
known to Java, Perl, Python, PHP, and Ruby programmers.
Author: Marek Gagolewski and Bartek Tartanus (stringi source code);
IBM and other contributors (ICU4C 52.1 source code);
Unicode, Inc. (Unicode Character Database)
Maintainer: Marek Gagolewski
stringi-0.2-5/stringi/R/charclass.R |only
stringi-0.2-5/stringi/R/files.R |only
stringi-0.2-5/stringi/R/justify.R |only
stringi-0.2-5/stringi/R/prepare_arg.R |only
stringi-0.2-5/stringi/R/search_count_class.R |only
stringi-0.2-5/stringi/R/search_count_coll.R |only
stringi-0.2-5/stringi/R/search_count_fixed.R |only
stringi-0.2-5/stringi/R/search_count_other.R |only
stringi-0.2-5/stringi/R/search_count_regex.R |only
stringi-0.2-5/stringi/R/search_detect_class.R |only
stringi-0.2-5/stringi/R/search_detect_coll.R |only
stringi-0.2-5/stringi/R/search_detect_fixed.R |only
stringi-0.2-5/stringi/R/search_detect_other.R |only
stringi-0.2-5/stringi/R/search_detect_regex.R |only
stringi-0.2-5/stringi/R/search_extract_class.R |only
stringi-0.2-5/stringi/R/search_extract_coll.R |only
stringi-0.2-5/stringi/R/search_extract_other.R |only
stringi-0.2-5/stringi/R/search_extract_regex.R |only
stringi-0.2-5/stringi/R/search_locate_class.R |only
stringi-0.2-5/stringi/R/search_locate_coll.R |only
stringi-0.2-5/stringi/R/search_locate_fixed.R |only
stringi-0.2-5/stringi/R/search_locate_other.R |only
stringi-0.2-5/stringi/R/search_locate_regex.R |only
stringi-0.2-5/stringi/R/search_match_other.R |only
stringi-0.2-5/stringi/R/search_match_regex.R |only
stringi-0.2-5/stringi/R/search_replace_class.R |only
stringi-0.2-5/stringi/R/search_replace_coll.R |only
stringi-0.2-5/stringi/R/search_replace_fixed.R |only
stringi-0.2-5/stringi/R/search_replace_other.R |only
stringi-0.2-5/stringi/R/search_replace_regex.R |only
stringi-0.2-5/stringi/R/search_split_class.R |only
stringi-0.2-5/stringi/R/search_split_coll.R |only
stringi-0.2-5/stringi/R/search_split_fixed.R |only
stringi-0.2-5/stringi/R/search_split_other.R |only
stringi-0.2-5/stringi/R/search_split_regex.R |only
stringi-0.2-5/stringi/R/test.R |only
stringi-0.2-5/stringi/man/stri_count_charclass.Rd |only
stringi-0.2-5/stringi/man/stri_count_coll.Rd |only
stringi-0.2-5/stringi/man/stri_count_fixed.Rd |only
stringi-0.2-5/stringi/man/stri_count_regex.Rd |only
stringi-0.2-5/stringi/man/stri_detect_charclass.Rd |only
stringi-0.2-5/stringi/man/stri_detect_coll.Rd |only
stringi-0.2-5/stringi/man/stri_detect_fixed.Rd |only
stringi-0.2-5/stringi/man/stri_detect_regex.Rd |only
stringi-0.2-5/stringi/man/stri_extract_all.Rd |only
stringi-0.2-5/stringi/man/stri_extract_charclass.Rd |only
stringi-0.2-5/stringi/man/stri_extract_coll.Rd |only
stringi-0.2-5/stringi/man/stri_extract_first.Rd |only
stringi-0.2-5/stringi/man/stri_extract_last.Rd |only
stringi-0.2-5/stringi/man/stri_extract_regex.Rd |only
stringi-0.2-5/stringi/man/stri_locate_all.Rd |only
stringi-0.2-5/stringi/man/stri_locate_charclass.Rd |only
stringi-0.2-5/stringi/man/stri_locate_coll.Rd |only
stringi-0.2-5/stringi/man/stri_locate_first.Rd |only
stringi-0.2-5/stringi/man/stri_locate_fixed.Rd |only
stringi-0.2-5/stringi/man/stri_locate_last.Rd |only
stringi-0.2-5/stringi/man/stri_locate_regex.Rd |only
stringi-0.2-5/stringi/man/stri_locate_words.Rd |only
stringi-0.2-5/stringi/man/stri_match.Rd |only
stringi-0.2-5/stringi/man/stri_match_all.Rd |only
stringi-0.2-5/stringi/man/stri_match_first.Rd |only
stringi-0.2-5/stringi/man/stri_match_last.Rd |only
stringi-0.2-5/stringi/man/stri_match_regex.Rd |only
stringi-0.2-5/stringi/man/stri_replace_all.Rd |only
stringi-0.2-5/stringi/man/stri_replace_charclass.Rd |only
stringi-0.2-5/stringi/man/stri_replace_coll.Rd |only
stringi-0.2-5/stringi/man/stri_replace_first.Rd |only
stringi-0.2-5/stringi/man/stri_replace_fixed.Rd |only
stringi-0.2-5/stringi/man/stri_replace_last.Rd |only
stringi-0.2-5/stringi/man/stri_replace_regex.Rd |only
stringi-0.2-5/stringi/man/stri_split_charclass.Rd |only
stringi-0.2-5/stringi/man/stri_split_coll.Rd |only
stringi-0.2-5/stringi/man/stri_split_fixed.Rd |only
stringi-0.2-5/stringi/man/stri_split_regex.Rd |only
stringi-0.2-5/stringi/src/stri_justify.cpp |only
stringi-0.2-5/stringi/src/stri_search_words.cpp |only
stringi-0.2-5/stringi/src/stri_splitpos.cpp |only
stringi-0.2-5/stringi/src/stri_uchar.cpp |only
stringi-0.3-1/stringi/DESCRIPTION | 16
stringi-0.3-1/stringi/INSTALL | 17
stringi-0.3-1/stringi/MD5 | 483 ++++-----
stringi-0.3-1/stringi/NAMESPACE | 38
stringi-0.3-1/stringi/NEWS | 227 ++--
stringi-0.3-1/stringi/R/ICU_settings.R | 18
stringi-0.3-1/stringi/R/compare.R | 114 +-
stringi-0.3-1/stringi/R/draft_encdetect.R |only
stringi-0.3-1/stringi/R/draft_files.R |only
stringi-0.3-1/stringi/R/encoding.R | 14
stringi-0.3-1/stringi/R/encoding_conversion.R | 2
stringi-0.3-1/stringi/R/encoding_detection.R | 191 ---
stringi-0.3-1/stringi/R/encoding_management.R | 6
stringi-0.3-1/stringi/R/escape.R | 10
stringi-0.3-1/stringi/R/install.R | 4
stringi-0.3-1/stringi/R/internal_prepare_arg.R |only
stringi-0.3-1/stringi/R/internal_test.R |only
stringi-0.3-1/stringi/R/join.R | 47
stringi-0.3-1/stringi/R/length.R | 51
stringi-0.3-1/stringi/R/locale_management.R | 8
stringi-0.3-1/stringi/R/opts.R | 121 +-
stringi-0.3-1/stringi/R/pad.R | 8
stringi-0.3-1/stringi/R/random.R | 126 ++
stringi-0.3-1/stringi/R/reverse.R | 8
stringi-0.3-1/stringi/R/search.R | 528 +++++++---
stringi-0.3-1/stringi/R/search_count_4.R |only
stringi-0.3-1/stringi/R/search_count_bound.R |only
stringi-0.3-1/stringi/R/search_detect_4.R |only
stringi-0.3-1/stringi/R/search_extract_4.R |only
stringi-0.3-1/stringi/R/search_extract_bound.R |only
stringi-0.3-1/stringi/R/search_locate_4.R |only
stringi-0.3-1/stringi/R/search_locate_bound.R |only
stringi-0.3-1/stringi/R/search_match_4.R |only
stringi-0.3-1/stringi/R/search_replace_4.R |only
stringi-0.3-1/stringi/R/search_replace_na.R |only
stringi-0.3-1/stringi/R/search_split_4.R |only
stringi-0.3-1/stringi/R/search_split_bound.R |only
stringi-0.3-1/stringi/R/search_startsendswith_4.R |only
stringi-0.3-1/stringi/R/search_subset_4.R |only
stringi-0.3-1/stringi/R/stats.R | 8
stringi-0.3-1/stringi/R/stringi-package.R | 21
stringi-0.3-1/stringi/R/sub.R | 18
stringi-0.3-1/stringi/R/todo_charclass.R |only
stringi-0.3-1/stringi/R/todo_justify.R |only
stringi-0.3-1/stringi/R/todo_other.R |only
stringi-0.3-1/stringi/R/todo_rbnf.R |only
stringi-0.3-1/stringi/R/todo_search_in.R |only
stringi-0.3-1/stringi/R/todo_split.R |only
stringi-0.3-1/stringi/R/trans_casemap.R | 45
stringi-0.3-1/stringi/R/trans_normalization.R | 6
stringi-0.3-1/stringi/R/trans_transliterate.R | 17
stringi-0.3-1/stringi/R/trim.R | 15
stringi-0.3-1/stringi/R/utils.R |only
stringi-0.3-1/stringi/R/wrap.R | 63 -
stringi-0.3-1/stringi/inst/CITATION |only
stringi-0.3-1/stringi/man/oper_comparison.Rd | 64 -
stringi-0.3-1/stringi/man/oper_plus.Rd | 15
stringi-0.3-1/stringi/man/search_match.Rd |only
stringi-0.3-1/stringi/man/stri_compare.Rd | 48
stringi-0.3-1/stringi/man/stri_count.Rd | 86 +
stringi-0.3-1/stringi/man/stri_count_boundaries.Rd |only
stringi-0.3-1/stringi/man/stri_detect.Rd | 84 +
stringi-0.3-1/stringi/man/stri_dup.Rd | 9
stringi-0.3-1/stringi/man/stri_duplicated.Rd | 96 -
stringi-0.3-1/stringi/man/stri_enc_detect.Rd | 2
stringi-0.3-1/stringi/man/stri_enc_detect2.Rd | 35
stringi-0.3-1/stringi/man/stri_enc_fromutf32.Rd | 2
stringi-0.3-1/stringi/man/stri_enc_info.Rd | 4
stringi-0.3-1/stringi/man/stri_enc_isascii.Rd | 7
stringi-0.3-1/stringi/man/stri_enc_isutf16.Rd | 2
stringi-0.3-1/stringi/man/stri_enc_isutf8.Rd | 9
stringi-0.3-1/stringi/man/stri_enc_list.Rd | 2
stringi-0.3-1/stringi/man/stri_enc_mark.Rd | 4
stringi-0.3-1/stringi/man/stri_enc_set.Rd | 2
stringi-0.3-1/stringi/man/stri_enc_toascii.Rd | 2
stringi-0.3-1/stringi/man/stri_enc_tonative.Rd | 2
stringi-0.3-1/stringi/man/stri_enc_toutf32.Rd | 2
stringi-0.3-1/stringi/man/stri_enc_toutf8.Rd | 4
stringi-0.3-1/stringi/man/stri_encode.Rd | 2
stringi-0.3-1/stringi/man/stri_escape_unicode.Rd | 7
stringi-0.3-1/stringi/man/stri_extract.Rd | 159 ++-
stringi-0.3-1/stringi/man/stri_extract_words.Rd | 99 -
stringi-0.3-1/stringi/man/stri_flatten.Rd | 11
stringi-0.3-1/stringi/man/stri_info.Rd | 2
stringi-0.3-1/stringi/man/stri_install.Rd | 4
stringi-0.3-1/stringi/man/stri_isempty.Rd | 9
stringi-0.3-1/stringi/man/stri_join.Rd | 18
stringi-0.3-1/stringi/man/stri_length.Rd | 19
stringi-0.3-1/stringi/man/stri_list2matrix.Rd |only
stringi-0.3-1/stringi/man/stri_locale_info.Rd | 7
stringi-0.3-1/stringi/man/stri_locale_list.Rd | 2
stringi-0.3-1/stringi/man/stri_locale_set.Rd | 2
stringi-0.3-1/stringi/man/stri_locate.Rd | 208 ++-
stringi-0.3-1/stringi/man/stri_locate_boundaries.Rd | 159 +--
stringi-0.3-1/stringi/man/stri_numbytes.Rd | 8
stringi-0.3-1/stringi/man/stri_opts_brkiter.Rd |only
stringi-0.3-1/stringi/man/stri_opts_collator.Rd | 45
stringi-0.3-1/stringi/man/stri_opts_regex.Rd | 61 -
stringi-0.3-1/stringi/man/stri_order.Rd | 39
stringi-0.3-1/stringi/man/stri_pad.Rd | 13
stringi-0.3-1/stringi/man/stri_prepare_arg_double.Rd | 2
stringi-0.3-1/stringi/man/stri_prepare_arg_double_1.Rd | 2
stringi-0.3-1/stringi/man/stri_prepare_arg_integer.Rd | 2
stringi-0.3-1/stringi/man/stri_prepare_arg_integer_1.Rd | 2
stringi-0.3-1/stringi/man/stri_prepare_arg_logical.Rd | 2
stringi-0.3-1/stringi/man/stri_prepare_arg_logical_1.Rd | 2
stringi-0.3-1/stringi/man/stri_prepare_arg_raw.Rd | 2
stringi-0.3-1/stringi/man/stri_prepare_arg_string.Rd | 2
stringi-0.3-1/stringi/man/stri_prepare_arg_string_1.Rd | 2
stringi-0.3-1/stringi/man/stri_rand_lipsum.Rd |only
stringi-0.3-1/stringi/man/stri_rand_shuffle.Rd | 10
stringi-0.3-1/stringi/man/stri_rand_strings.Rd | 12
stringi-0.3-1/stringi/man/stri_read_lines.Rd | 2
stringi-0.3-1/stringi/man/stri_read_raw.Rd | 2
stringi-0.3-1/stringi/man/stri_replace.Rd | 186 ++-
stringi-0.3-1/stringi/man/stri_replace_na.Rd | 44
stringi-0.3-1/stringi/man/stri_reverse.Rd | 9
stringi-0.3-1/stringi/man/stri_split.Rd | 129 ++
stringi-0.3-1/stringi/man/stri_split_boundaries.Rd | 127 --
stringi-0.3-1/stringi/man/stri_split_lines.Rd | 36
stringi-0.3-1/stringi/man/stri_startsendswith.Rd |only
stringi-0.3-1/stringi/man/stri_stats_general.Rd | 6
stringi-0.3-1/stringi/man/stri_stats_latex.Rd | 6
stringi-0.3-1/stringi/man/stri_sub.Rd | 55 -
stringi-0.3-1/stringi/man/stri_subset.Rd |only
stringi-0.3-1/stringi/man/stri_trans_casemap.Rd | 92 -
stringi-0.3-1/stringi/man/stri_trans_general.Rd | 17
stringi-0.3-1/stringi/man/stri_trans_list.Rd | 4
stringi-0.3-1/stringi/man/stri_trans_nf.Rd | 7
stringi-0.3-1/stringi/man/stri_trim.Rd | 47
stringi-0.3-1/stringi/man/stri_unescape_unicode.Rd | 7
stringi-0.3-1/stringi/man/stri_unique.Rd | 51
stringi-0.3-1/stringi/man/stri_wrap.Rd | 102 -
stringi-0.3-1/stringi/man/stri_write_lines.Rd | 2
stringi-0.3-1/stringi/man/stringi-arguments.Rd | 3
stringi-0.3-1/stringi/man/stringi-encoding.Rd | 17
stringi-0.3-1/stringi/man/stringi-locale.Rd | 36
stringi-0.3-1/stringi/man/stringi-package.Rd | 22
stringi-0.3-1/stringi/man/stringi-search-boundaries.Rd |only
stringi-0.3-1/stringi/man/stringi-search-charclass.Rd | 271 ++---
stringi-0.3-1/stringi/man/stringi-search-coll.Rd | 62 -
stringi-0.3-1/stringi/man/stringi-search-fixed.Rd | 24
stringi-0.3-1/stringi/man/stringi-search-regex.Rd | 194 +++
stringi-0.3-1/stringi/man/stringi-search.Rd | 302 ++---
stringi-0.3-1/stringi/src/stri_ICU_settings.cpp | 5
stringi-0.3-1/stringi/src/stri_TODO_justify.cpp |only
stringi-0.3-1/stringi/src/stri_TODO_splitpos.cpp |only
stringi-0.3-1/stringi/src/stri_TODO_uchar.cpp |only
stringi-0.3-1/stringi/src/stri_collator.cpp | 136 +-
stringi-0.3-1/stringi/src/stri_common.cpp | 4
stringi-0.3-1/stringi/src/stri_compare.cpp | 57 -
stringi-0.3-1/stringi/src/stri_container_bytesearch.cpp | 4
stringi-0.3-1/stringi/src/stri_container_bytesearch.h | 3
stringi-0.3-1/stringi/src/stri_container_charclass.h | 56 +
stringi-0.3-1/stringi/src/stri_container_regex.cpp | 52
stringi-0.3-1/stringi/src/stri_container_regex.h | 7
stringi-0.3-1/stringi/src/stri_container_usearch.cpp | 43
stringi-0.3-1/stringi/src/stri_container_usearch.h | 11
stringi-0.3-1/stringi/src/stri_container_utf8.cpp | 22
stringi-0.3-1/stringi/src/stri_container_utf8.h | 59 +
stringi-0.3-1/stringi/src/stri_cpp.txt | 13
stringi-0.3-1/stringi/src/stri_encoding_conversion.cpp | 58 -
stringi-0.3-1/stringi/src/stri_encoding_detection.cpp | 26
stringi-0.3-1/stringi/src/stri_encoding_management.cpp | 26
stringi-0.3-1/stringi/src/stri_escape.cpp | 15
stringi-0.3-1/stringi/src/stri_exception.h | 6
stringi-0.3-1/stringi/src/stri_external.h | 5
stringi-0.3-1/stringi/src/stri_interval.h |only
stringi-0.3-1/stringi/src/stri_join.cpp | 186 ++-
stringi-0.3-1/stringi/src/stri_length.cpp | 21
stringi-0.3-1/stringi/src/stri_messages.h | 7
stringi-0.3-1/stringi/src/stri_pad.cpp | 19
stringi-0.3-1/stringi/src/stri_prepare_arg.cpp | 149 ++
stringi-0.3-1/stringi/src/stri_random.cpp | 24
stringi-0.3-1/stringi/src/stri_reverse.cpp | 7
stringi-0.3-1/stringi/src/stri_search_boundaries.cpp | 457 +++++++-
stringi-0.3-1/stringi/src/stri_search_class_count.cpp | 11
stringi-0.3-1/stringi/src/stri_search_class_detect.cpp | 9
stringi-0.3-1/stringi/src/stri_search_class_extract.cpp | 130 +-
stringi-0.3-1/stringi/src/stri_search_class_locate.cpp | 117 --
stringi-0.3-1/stringi/src/stri_search_class_replace.cpp | 216 ++--
stringi-0.3-1/stringi/src/stri_search_class_split.cpp | 64 -
stringi-0.3-1/stringi/src/stri_search_class_startsendswith.cpp |only
stringi-0.3-1/stringi/src/stri_search_class_subset.cpp |only
stringi-0.3-1/stringi/src/stri_search_class_trim.cpp | 13
stringi-0.3-1/stringi/src/stri_search_coll_count.cpp | 9
stringi-0.3-1/stringi/src/stri_search_coll_detect.cpp | 9
stringi-0.3-1/stringi/src/stri_search_coll_extract.cpp | 61 -
stringi-0.3-1/stringi/src/stri_search_coll_locate.cpp | 42
stringi-0.3-1/stringi/src/stri_search_coll_replace.cpp | 164 ++-
stringi-0.3-1/stringi/src/stri_search_coll_split.cpp | 71 +
stringi-0.3-1/stringi/src/stri_search_coll_startsendswith.cpp |only
stringi-0.3-1/stringi/src/stri_search_coll_subset.cpp |only
stringi-0.3-1/stringi/src/stri_search_common.cpp | 62 +
stringi-0.3-1/stringi/src/stri_search_fixed_count.cpp | 9
stringi-0.3-1/stringi/src/stri_search_fixed_detect.cpp | 10
stringi-0.3-1/stringi/src/stri_search_fixed_extract.cpp | 8
stringi-0.3-1/stringi/src/stri_search_fixed_locate.cpp | 42
stringi-0.3-1/stringi/src/stri_search_fixed_replace.cpp | 416 +++++++
stringi-0.3-1/stringi/src/stri_search_fixed_split.cpp | 76 +
stringi-0.3-1/stringi/src/stri_search_fixed_startsendswith.cpp |only
stringi-0.3-1/stringi/src/stri_search_fixed_subset.cpp |only
stringi-0.3-1/stringi/src/stri_search_in.cpp |only
stringi-0.3-1/stringi/src/stri_search_other_replace.cpp | 11
stringi-0.3-1/stringi/src/stri_search_other_split.cpp | 92 -
stringi-0.3-1/stringi/src/stri_search_regex_count.cpp | 9
stringi-0.3-1/stringi/src/stri_search_regex_detect.cpp | 9
stringi-0.3-1/stringi/src/stri_search_regex_extract.cpp | 59 -
stringi-0.3-1/stringi/src/stri_search_regex_locate.cpp | 44
stringi-0.3-1/stringi/src/stri_search_regex_match.cpp | 78 -
stringi-0.3-1/stringi/src/stri_search_regex_replace.cpp | 146 ++
stringi-0.3-1/stringi/src/stri_search_regex_split.cpp | 66 -
stringi-0.3-1/stringi/src/stri_search_regex_subset.cpp |only
stringi-0.3-1/stringi/src/stri_stats.cpp | 14
stringi-0.3-1/stringi/src/stri_string8.h | 88 +
stringi-0.3-1/stringi/src/stri_string8buf.h | 42
stringi-0.3-1/stringi/src/stri_stringi.cpp | 85 -
stringi-0.3-1/stringi/src/stri_stringi.h | 89 +
stringi-0.3-1/stringi/src/stri_sub.cpp | 119 +-
stringi-0.3-1/stringi/src/stri_test.cpp | 19
stringi-0.3-1/stringi/src/stri_trans_casemap.cpp | 67 -
stringi-0.3-1/stringi/src/stri_trans_normalization.cpp | 23
stringi-0.3-1/stringi/src/stri_trans_transliterate.cpp | 18
stringi-0.3-1/stringi/src/stri_ucnv.cpp | 32
stringi-0.3-1/stringi/src/stri_uloc.cpp | 4
stringi-0.3-1/stringi/src/stri_utils.cpp |only
stringi-0.3-1/stringi/src/stri_wrap.cpp | 33
305 files changed, 6076 insertions(+), 3575 deletions(-)
Title: Rcpp bindings for Redis using the hiredis library
Diff between RcppRedis versions 0.1.1 dated 2014-06-09 and 0.1.2 dated 2014-11-06
Description: RcppRedis connects R to the Redis key/value store using the
C client library hiredis
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel
ChangeLog | 20 ++++++++
DESCRIPTION | 8 +--
MD5 | 8 ++-
inst/tests/runit.execvTests.R |only
inst/tests/runit.setTests.R |only
src/Redis.cpp | 105 ++++++++++++++++++++++++++++++++++++++++++
6 files changed, 134 insertions(+), 7 deletions(-)
Title: Functions for visualising simple graphs (networks), plotting
flow diagrams
Diff between diagram versions 1.6.2 dated 2014-01-08 and 1.6.3 dated 2014-11-06
Description: Visualises simple graphs (networks) based on a transition matrix, utilities to plot flow diagrams,
visualising webs, electrical networks, ...
Support for the books "A practical guide to ecological modelling -
using R as a simulation platform"
by Karline Soetaert and Peter M.J. Herman (2009). Springer.
and the book "Solving Differential Equations in R"
by Karline Soetaert, Jeff Cash and Francesca Mazzia. Springer.
Includes demo(flowchart), demo(plotmat), demo(plotweb)
Author: Karline Soetaert
Maintainer: Karline Soetaert
DESCRIPTION | 12 ++++++------
MD5 | 14 +++++++-------
NAMESPACE | 1 +
build/vignette.rds |binary
data/Teasel.rda |binary
data/rigaweb.rda |binary
data/takapotoweb.rda |binary
man/plotmat.Rd | 12 +++++++++++-
8 files changed, 25 insertions(+), 14 deletions(-)
Title: Truncated Maximum Likelihood fit and Robust Accelerated Failure
Time regression for Gaussian and logWeibull case.
Diff between RobustAFT versions 1.2 dated 2013-06-20 and 1.3 dated 2014-11-06
Description: R functions for the computation of the truncated maximum
likelihood and the robust accelerated failure time regression
for gaussian and log-Weibull case.
Author: Alfio Marazzi
Maintainer: A. Randriamiharisoa
RobustAFT-1.2/RobustAFT/R/comval2.R |only
RobustAFT-1.3/RobustAFT/DESCRIPTION | 14 -
RobustAFT-1.3/RobustAFT/MD5 | 117 +++++++-------
RobustAFT-1.3/RobustAFT/R/AV.MM.gauss.R | 10 -
RobustAFT-1.3/RobustAFT/R/Beta.w.R | 2
RobustAFT-1.3/RobustAFT/R/BtamatW.r | 2
RobustAFT-1.3/RobustAFT/R/E.Smat.R | 6
RobustAFT-1.3/RobustAFT/R/E.Smat.n.R | 6
RobustAFT-1.3/RobustAFT/R/E0.vect.R | 4
RobustAFT-1.3/RobustAFT/R/E0.vect.n.R | 4
RobustAFT-1.3/RobustAFT/R/E0vect.R | 4
RobustAFT-1.3/RobustAFT/R/E0vect.n.R | 4
RobustAFT-1.3/RobustAFT/R/E1vect.R | 4
RobustAFT-1.3/RobustAFT/R/E1vect.n.R | 4
RobustAFT-1.3/RobustAFT/R/E2vect.R | 4
RobustAFT-1.3/RobustAFT/R/E2vect.n.R | 4
RobustAFT-1.3/RobustAFT/R/MM.E.gauss.R | 2
RobustAFT-1.3/RobustAFT/R/Q1mat.R | 2
RobustAFT-1.3/RobustAFT/R/Q1mat.n.R | 2
RobustAFT-1.3/RobustAFT/R/Q2vect.R | 4
RobustAFT-1.3/RobustAFT/R/Q3sca.R | 6
RobustAFT-1.3/RobustAFT/R/Q3sca.n.R | 4
RobustAFT-1.3/RobustAFT/R/SparamW.S.r | 2
RobustAFT-1.3/RobustAFT/R/TML.BetaW.r | 4
RobustAFT-1.3/RobustAFT/R/TML.censored.R | 18 --
RobustAFT-1.3/RobustAFT/R/TML.noncensored.R | 4
RobustAFT-1.3/RobustAFT/R/TML1.control.R | 4
RobustAFT-1.3/RobustAFT/R/TML1.noncensored.R | 8
RobustAFT-1.3/RobustAFT/R/TMLW.r | 2
RobustAFT-1.3/RobustAFT/R/comval.R |only
RobustAFT-1.3/RobustAFT/R/dfcomn.R |only
RobustAFT-1.3/RobustAFT/R/dfcomn2.R | 14 +
RobustAFT-1.3/RobustAFT/R/dfvals.R | 8
RobustAFT-1.3/RobustAFT/R/hysest.R | 6
RobustAFT-1.3/RobustAFT/R/invM2.n.R | 8
RobustAFT-1.3/RobustAFT/R/invM2.n1.R | 8
RobustAFT-1.3/RobustAFT/R/invM2.w.R | 20 +-
RobustAFT-1.3/RobustAFT/R/invM2.w1.R | 20 +-
RobustAFT-1.3/RobustAFT/R/liepsu.R | 2
RobustAFT-1.3/RobustAFT/R/lywalg.R | 4
RobustAFT-1.3/RobustAFT/R/plot.TML.R | 2
RobustAFT-1.3/RobustAFT/R/plot.fits.compare.R | 2
RobustAFT-1.3/RobustAFT/R/rysigm.R | 4
RobustAFT-1.3/RobustAFT/R/rywalg.R | 4
RobustAFT-1.3/RobustAFT/man/RobustAFT.package.Rd | 107 +++++-------
RobustAFT-1.3/RobustAFT/man/TML.censored.control.S.rd | 9 -
RobustAFT-1.3/RobustAFT/man/TML.censored.control.ref.rd | 15 -
RobustAFT-1.3/RobustAFT/man/TML.censored.control.tml.rd | 8
RobustAFT-1.3/RobustAFT/man/TML.censored.rd | 69 +++-----
RobustAFT-1.3/RobustAFT/man/TML.noncensored.control.rd | 21 +-
RobustAFT-1.3/RobustAFT/man/TML.noncensored.rd | 55 ++----
RobustAFT-1.3/RobustAFT/man/TML1.noncensored.Rd | 50 ++---
RobustAFT-1.3/RobustAFT/man/TML1.noncensored.control.S.Rd | 5
RobustAFT-1.3/RobustAFT/man/TML1.noncensored.control.rd | 9 -
RobustAFT-1.3/RobustAFT/man/fits.compare.rd | 22 +-
RobustAFT-1.3/RobustAFT/man/plot.TML.rd | 36 +---
RobustAFT-1.3/RobustAFT/man/plot.fits.compare.rd | 27 +--
RobustAFT-1.3/RobustAFT/man/predict.TML.rd | 19 +-
RobustAFT-1.3/RobustAFT/man/summary.TML.rd | 40 +---
RobustAFT-1.3/RobustAFT/src/robaft.f | 50 -----
RobustAFT-1.3/RobustAFT/src/robcom.f | 87 ++++++++++
61 files changed, 484 insertions(+), 498 deletions(-)
Title: Import, plot and analyze bathymetric and topographic data
Diff between marmap versions 0.8 dated 2014-06-17 and 0.9 dated 2014-11-06
Description: Import, plot and analyze bathymetric and topographic data
Author: Eric Pante, Benoit Simon-Bouhet, and Jean-Olivier Irisson
Maintainer: Eric Pante
marmap-0.8/marmap/R/add.nas.R |only
marmap-0.8/marmap/inst/doc/marmap.R |only
marmap-0.8/marmap/inst/doc/marmap.Rnw |only
marmap-0.8/marmap/man/add.nas.Rd |only
marmap-0.8/marmap/vignettes/3d.pdf |only
marmap-0.8/marmap/vignettes/aleu.pdf |only
marmap-0.8/marmap/vignettes/hawaii1.pdf |only
marmap-0.8/marmap/vignettes/hawaii2.pdf |only
marmap-0.8/marmap/vignettes/lc.pdf |only
marmap-0.8/marmap/vignettes/marmap.Rnw |only
marmap-0.8/marmap/vignettes/png.xyz |only
marmap-0.8/marmap/vignettes/sampling.csv |only
marmap-0.9/marmap/DESCRIPTION | 17 +--
marmap-0.9/marmap/MD5 | 68 +++++++--------
marmap-0.9/marmap/NAMESPACE | 3
marmap-0.9/marmap/R/as.bathy.R | 5 -
marmap-0.9/marmap/R/dist2isobath.R |only
marmap-0.9/marmap/R/get.depth.R | 2
marmap-0.9/marmap/R/getNOAA.bathy.R | 4
marmap-0.9/marmap/R/linesGC.R |only
marmap-0.9/marmap/R/palette.bathy.R | 16 +--
marmap-0.9/marmap/R/read.bathy.R | 5 -
marmap-0.9/marmap/R/setSQL.R | 12 +-
marmap-0.9/marmap/R/subsetSQL.R | 23 ++---
marmap-0.9/marmap/build/vignette.rds |binary
marmap-0.9/marmap/data/aleutians.rda |binary
marmap-0.9/marmap/data/celt.rda |binary
marmap-0.9/marmap/data/florida.rda |binary
marmap-0.9/marmap/data/hawaii.rda |binary
marmap-0.9/marmap/data/hawaii.sites.rda |binary
marmap-0.9/marmap/data/metallo.rda |binary
marmap-0.9/marmap/data/nw.atlantic.coast.rda |binary
marmap-0.9/marmap/data/nw.atlantic.rda |binary
marmap-0.9/marmap/inst/doc/marmap-DataAnalysis.pdf |only
marmap-0.9/marmap/inst/doc/marmap-DataAnalysis.pdf.asis |only
marmap-0.9/marmap/inst/doc/marmap-ImportExport.pdf |only
marmap-0.9/marmap/inst/doc/marmap-ImportExport.pdf.asis |only
marmap-0.9/marmap/inst/doc/marmap.pdf |binary
marmap-0.9/marmap/inst/doc/marmap.pdf.asis |only
marmap-0.9/marmap/man/dist2isobath.Rd |only
marmap-0.9/marmap/man/get.depth.Rd | 2
marmap-0.9/marmap/man/linesGC.Rd |only
marmap-0.9/marmap/man/marmap.Rd | 12 +-
marmap-0.9/marmap/man/subsetSQL.Rd | 20 ++--
marmap-0.9/marmap/vignettes/marmap-DataAnalysis.pdf.asis |only
marmap-0.9/marmap/vignettes/marmap-ImportExport.pdf.asis |only
marmap-0.9/marmap/vignettes/marmap.pdf.asis |only
47 files changed, 96 insertions(+), 93 deletions(-)
Title: Phase I/II Adaptive Dose-Finding Design For MTA
Diff between dfmta versions 1.0 dated 2014-11-04 and 1.0-1 dated 2014-11-06
Description: Phase I/II adaptive dose-finding design for single-agent
Molecularly Targeted Agent (MTA), according to the paper "Phase
I/II Dose-Finding Design for Molecularly Targeted Agent: Plateau
Determination using Adaptive Randomization", Statistics in
Medicine, 2014.
Author: Marie-Karelle Riviere and Jacques-Henri Jourdan
Maintainer: Marie-Karelle Riviere
DESCRIPTION | 8 +++----
MD5 | 10 ++++-----
src/CppBugs/cppbugs/mcmc.math.hpp | 15 +++++---------
src/CppBugs/cppbugs/mcmc.model.hpp | 1
src/CppBugs/cppbugs/mcmc.rng.hpp | 4 ++-
src/dfmta.cpp | 39 +++++++++++++------------------------
6 files changed, 32 insertions(+), 45 deletions(-)
Title: Configural Frequencies Analysis Using Log-linear Modeling
Diff between confreq versions 1.1 dated 2014-04-07 and 1.3 dated 2014-11-06
Description: Several functions for Configural Frequencies Analysis - introduced
by G. A. Lienert as 'Konfigurations Frequenz Analyse' (KFA)
Author: Joerg-Henrik Heine, R.W. Alexandrowicz (function stirling_cfa() )
and some package testing by Mark Stemmler
Maintainer: Joerg-Henrik Heine
confreq-1.1/confreq/R/confreq.R |only
confreq-1.1/confreq/man/confreq.Rd |only
confreq-1.3/confreq/DESCRIPTION | 22 ++----
confreq-1.3/confreq/MD5 | 66 +++++++++++--------
confreq-1.3/confreq/NAMESPACE | 13 +++
confreq-1.3/confreq/NEWS | 23 ++++++
confreq-1.3/confreq/R/CFA.R | 71 +++++++++++++++-----
confreq-1.3/confreq/R/S2CFA.R |only
confreq-1.3/confreq/R/chi_local_test_cfa.R | 2
confreq-1.3/confreq/R/confreq-package.R |only
confreq-1.3/confreq/R/dat2fre.R | 18 ++---
confreq-1.3/confreq/R/design_cfg_cfa.R | 4 -
confreq-1.3/confreq/R/df_des_cfa.R | 2
confreq-1.3/confreq/R/expected_cfa.R | 4 -
confreq-1.3/confreq/R/fre2dat.R | 2
confreq-1.3/confreq/R/ftab.R |only
confreq-1.3/confreq/R/lr.R |only
confreq-1.3/confreq/R/pos_cfg_cfa.R | 2
confreq-1.3/confreq/R/summary.CFA.R |only
confreq-1.3/confreq/R/summary.S2CFA.R |only
confreq-1.3/confreq/R/z_tests_cfa.R | 8 +-
confreq-1.3/confreq/data/Lienert1978.RData |only
confreq-1.3/confreq/data/newborns.RData |only
confreq-1.3/confreq/man/CFA.Rd | 88 +++++++-------------------
confreq-1.3/confreq/man/Lienert1978.Rd |only
confreq-1.3/confreq/man/LienertLSD.Rd | 2
confreq-1.3/confreq/man/S2CFA.Rd |only
confreq-1.3/confreq/man/binomial_test_cfa.Rd | 25 ++-----
confreq-1.3/confreq/man/chi_local_test_cfa.Rd | 19 ++---
confreq-1.3/confreq/man/confreq-package.Rd |only
confreq-1.3/confreq/man/dat2fre.Rd | 40 +++--------
confreq-1.3/confreq/man/design_cfg_cfa.Rd | 47 +++----------
confreq-1.3/confreq/man/df_des_cfa.Rd | 18 ++---
confreq-1.3/confreq/man/expected_cfa.Rd | 32 +++------
confreq-1.3/confreq/man/fre2dat.Rd | 35 ++--------
confreq-1.3/confreq/man/ftab.Rd |only
confreq-1.3/confreq/man/lr.Rd |only
confreq-1.3/confreq/man/newborns.Rd |only
confreq-1.3/confreq/man/pos_cfg_cfa.Rd | 26 ++-----
confreq-1.3/confreq/man/stirling_cfa.Rd | 50 ++++----------
confreq-1.3/confreq/man/summary.CFA.Rd |only
confreq-1.3/confreq/man/summary.S2CFA.Rd |only
confreq-1.3/confreq/man/z_tests_cfa.Rd | 34 ++--------
43 files changed, 292 insertions(+), 361 deletions(-)
Title: Send push notifications using Pushover
Diff between pushoverr versions 0.1.3 dated 2014-06-18 and 0.1.4 dated 2014-11-06
Description: A package for sending push notifications to mobile devices (iOS and
Android) and the desktop using Pushover
Author: Brian Connelly [aut, cre]
Maintainer: Brian Connelly
DESCRIPTION | 14 ++--
MD5 | 78 ++++++++++++------------
NAMESPACE | 7 --
NEWS | 5 +
R/PushoverMessage.R | 3
R/PushoverResponse.R | 6 -
R/cancel_receipt.R |only
R/keys.R | 1
R/pushoverr.R | 10 +--
R/receipts.R | 1
R/sounds.R | 1
README.md | 7 +-
man/PushoverMessage-class.Rd | 2
man/PushoverMessage.Rd | 2
man/PushoverResponse-class.Rd | 6 -
man/PushoverResponse.Rd | 4 -
man/cancel_receipt.Rd |only
man/check_receipt.Rd | 2
man/content_value-PushoverResponse-method.Rd | 2
man/get_devices.Rd | 2
man/get_pushover_sounds.Rd | 2
man/headers-PushoverResponse-method.Rd | 2
man/http_status_code-PushoverResponse-method.Rd | 2
man/is.success-PushoverResponse-method.Rd | 2
man/is.valid_device.Rd | 2
man/is.valid_receipt.Rd | 2
man/is.valid_token.Rd | 2
man/pushover.Rd | 2
man/pushover_priorities.Rd | 2
man/pushoverr.Rd | 13 ++--
man/receipt-PushoverResponse-method.Rd | 2
man/request-PushoverResponse-method.Rd | 2
man/send-PushoverMessage-method.Rd | 2
man/send_pushovermessage.Rd | 2
man/set_pushover_app.Rd | 2
man/show-PushoverMessage-method.Rd | 2
man/show-PushoverResponse-method.Rd | 2
man/status-PushoverResponse-method.Rd | 2
man/validate_PushoverMessage.Rd | 2
man/validate_PushoverResponse.Rd | 2
man/validate_key.Rd | 2
41 files changed, 106 insertions(+), 100 deletions(-)
Title: Double Generalized Linear Models
Diff between dglm versions 1.6.2 dated 2012-10-30 and 1.8 dated 2014-11-06
Description: Fitting double generalized linear models
Author: Peter K Dunn
Maintainer: Peter K Dunn
dglm-1.6.2/dglm/ChangeLog.txt |only
dglm-1.6.2/dglm/dglm-tmp.R |only
dglm-1.8/dglm/ChangeLog |only
dglm-1.8/dglm/DESCRIPTION | 16 +++++++++-------
dglm-1.8/dglm/MD5 | 7 +++----
dglm-1.8/dglm/R/dglmall.R | 13 ++++++++++---
6 files changed, 22 insertions(+), 14 deletions(-)
Title: Dynamic model averaging
Diff between dma versions 1.2-0 dated 2013-05-03 and 1.2-2 dated 2014-11-06
Description: Dynamic model averaging for binary and continuous
outcomes.
Author: Tyler H. McCormick, Adrian Raftery, David Madigan
Maintainer: Hana Sevcikova
DESCRIPTION | 10 +++++-----
MD5 | 8 ++++----
NAMESPACE | 1 +
R/logistic.dma.default.R | 12 ++++++------
man/dma-package.Rd | 4 ++--
5 files changed, 18 insertions(+), 17 deletions(-)