Mon, 10 Nov 2014

New package tumblR with initial version 1.0
Package: tumblR
Type: Package
Title: Tumblr API
Version: 1.0
Date: 2014-09-27
Author: Andrea Capozio
Maintainer: Andrea Capozio
Description: This package provides an R-interface to the Tumblr web API (see Tumblr v2 API on https://www.tumblr.com/docs/en/api/v2). Tumblr is a microblogging platform and social networking website (https://www.tumblr.com).
Depends: R (>= 3.0.0), httr (>= 0.4), RCurl (>= 1.95-4.3), ROAuth (>= 0.9.3), stringr (>= 0.6.2), RJSONIO (>= 1.3-0)
License: Artistic-2.0
Collate: 'avatar.R' 'dashboard.R' 'def.postParams.R' 'follow.R' 'followers.R' 'http.connection.R' 'info.blog.R' 'like.post.R' 'likes.R' 'post.R' 'post.delete.R' 'post.edit.R' 'post.reblog.R' 'posts.R' 'posts.draft.R' 'posts.queue.R' 'posts.submission.R' 'tagged.R' 'unfollow.R' 'unlike.post.R' 'user.following.R' 'user.info.R' 'user.likes.R' 'compact.R' 'nonce.R' 'oauth.encode.R' 'oauth.encode1.R' 'sort.names.R'
Packaged: 2014-11-10 20:43:21 UTC; Andrea
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-10 22:46:49

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Package mpath updated to version 0.1-17 with previous version 0.1-16 dated 2014-11-09

Title: Regularized Linear Models
Description: Algorithms for fitting model-based penalized coefficient paths. Currently the models include penalized Poisson, negative binomial, zero-inflated Poisson and zero-inflated negative binomial regression models. The penalties include least absolute shrinkage and selection operator (LASSO), smoothly clipped absolute deviation (SCAD) and minimax concave penalty (MCP), and each possibly combining with L_2 penalty.
Author: Zhu Wang, with contributions from Achim Zeileis, Simon Jackman, Brian Ripley, Trevor Hastie, Rob Tibshirani, Balasubramanian Narasimhan, Gil Chu and Patrick Breheny
Maintainer: Zhu Wang

Diff between mpath versions 0.1-16 dated 2014-11-09 and 0.1-17 dated 2014-11-10

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Package HWxtest updated to version 1.0.5 with previous version 1.0.3 dated 2014-08-07

Title: Exact Tests for Hardy-Weinberg Proportions
Description: Tests whether a set of genotype counts fits the HW expectations. Exact tests performed by an efficient algorithm. Included test statistics are likelihood ratio, probability, U-score and Pearsons X2.
Author: Bill Engels
Maintainer: Bill Engels

Diff between HWxtest versions 1.0.3 dated 2014-08-07 and 1.0.5 dated 2014-11-10

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Package caret updated to version 6.0-37 with previous version 6.0-35 dated 2014-08-24

Title: Classification and Regression Training
Description: Misc functions for training and plotting classification and regression models
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre Williams, Chris Keefer, Allan Engelhardt, Tony Cooper, Zachary Mayer, Brenton Kenkel, the R Core Team and Michael Benesty.
Maintainer: Max Kuhn

Diff between caret versions 6.0-35 dated 2014-08-24 and 6.0-37 dated 2014-11-10

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Package TH.data updated to version 1.0-4 with previous version 1.0-3 dated 2014-01-15

Title: TH's Data Archive
Description: Contains data sets used in other packages Torsten Hothorn maintains.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn

Diff between TH.data versions 1.0-3 dated 2014-01-15 and 1.0-4 dated 2014-11-10

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Package Rcpp11 updated to version 3.1.2.0 with previous version 3.1.1 dated 2014-07-22

Title: R and C++11
Description: Rcpp11 includes a header only C++11 library that facilitates integration between R and modern C++.
Author: Romain Francois [aut, cre], Kevin Ushey [aut], John Chambers [ctb]
Maintainer: Romain Francois

Diff between Rcpp11 versions 3.1.1 dated 2014-07-22 and 3.1.2.0 dated 2014-11-10

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Package pdc updated to version 1.0.1 with previous version 1.0 dated 2014-10-16

Title: Permutation Distribution Clustering
Description: Permutation Distribution Clustering is a clustering method for time series. Dissimilarity of time series is formalized as the divergence between their permutation distributions. The permutation distribution was proposed as measure of the complexity of a time series.
Author: Andreas M. Brandmaier
Maintainer: Andreas M. Brandmaier

Diff between pdc versions 1.0 dated 2014-10-16 and 1.0.1 dated 2014-11-10

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Package gsDesign updated to version 2.9-3 with previous version 2.9-2 dated 2014-08-23

Title: Group Sequential Design
Description: gsDesign is a package that derives group sequential designs and describes their properties.
Author: Keaven Anderson
Maintainer: Keaven Anderson

Diff between gsDesign versions 2.9-2 dated 2014-08-23 and 2.9-3 dated 2014-11-10

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Package geocodeHERE updated to version 0.1.1 with previous version 0.1 dated 2014-11-05

Title: Wrapper for Nokia's HERE Geocoding API
Description: Wrapper for Nokia's HERE geocoding API. See http://here.com/ for more information on HERE and https://developer.here.com/geocoder for more information on the HERE geocoding API.
Author: Cory Nissen [aut, cre]
Maintainer: Cory Nissen

Diff between geocodeHERE versions 0.1 dated 2014-11-05 and 0.1.1 dated 2014-11-10

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New package episplineDensity with initial version 0.0-1
Package: episplineDensity
Version: 0.0-1
Date: 2014-11-08
Title: Density Estimation with Soft Information by Exponential Epi-splines
Author: Sam Buttrey, Johannes Royset, and Roger Wets, based on the Matlab code of Royset and Wets
Maintainer: Sam Buttrey
Depends: nloptr, pracma
Description: Produce one-dimensional density estimates using exponential epi-splines. The user may incorporate soft information, by imposing constraints that (i) require unimodality; (ii) require that the density be monotone non-increase or non-decreasing; (iii) put upper bounds on first or second moments; (iv) bound the density's values at mesh points; (v) require that the estimate be continuous or continuously differentiable; and more.
License: GPL-2
Packaged: 2014-11-10 15:51:07 UTC; sebuttre
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-10 18:33:30

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New package D2C with initial version 1.0
Package: D2C
Type: Package
Title: Predicting Causal Direction from Dependency Features
Version: 1.0
Date: 2014-06-10
Author: Gianluca Bontempi, Catharina Olsen, Maxime Flauder
Maintainer: Catharina Olsen
Description: The relationship between statistical dependency and causality lies at the heart of all statistical approaches to causal inference. The D2C package implements a supervised machine learning approach to infer the existence of a directed causal link between two variables in multivariate settings with n>2 variables. The approach relies on the asymmetry of some conditional (in)dependence relations between the members of the Markov blankets of two variables causally connected. The D2C algorithm predicts the existence of a direct causal link between two variables in a multivariate setting by (i) creating a set of of features of the relationship based on asymmetric descriptors of the multivariate dependency and (ii) using a classifier to learn a mapping between the features and the presence of a causal link
License: Artistic-2.0
Depends: randomForest
Imports: gRbase, lazy, RBGL, MASS, corpcor, infotheo, methods, Rgraphviz
LazyData: true
Packaged: 2014-11-10 14:36:35 UTC; cat
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-10 18:07:50

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Package ISBF updated to version 0.2.1 with previous version 0.2 dated 2013-11-06

Title: Iterative Selection of Blocks of Features - ISBF
Description: Selection of features for sparse regression estimation (like the LASSO). Selection of blocks of features when the regression parameter is sparse and constant by blocks (like the Fused-LASSO). Application to cgh arrays.
Author: Pierre Alquier
Maintainer: Pierre Alquier

Diff between ISBF versions 0.2 dated 2013-11-06 and 0.2.1 dated 2014-11-10

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Package DepthProc updated to version 1.0.2 with previous version 1.0.1 dated 2014-08-26

Title: DepthProc
Description: Package for depths
Author: Daniel Kosiorowski, Mateusz Bocian, Anna Wegrzynkiewicz and Zygmunt Zawadzki from Cracow University of Economics.
Maintainer: Zygmunt Zawadzki

Diff between DepthProc versions 1.0.1 dated 2014-08-26 and 1.0.2 dated 2014-11-10

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Package TUWmodel updated to version 0.1-4 with previous version 0.1-2 dated 2012-12-11

Title: Lumped Hydrological Model for Education Purposes
Description: The model, developed at the Vienna University of Technology, is a lumped conceptual rainfall-runoff model, following the structure of the HBV model. The model runs on a daily or shorter time step and consists of a snow routine, a soil moisture routine and a flow routing routine. See Parajka, J., R. Merz, G. Bloeschl (2007) Uncertainty and multiple objective calibration in regional water balance modelling: case study in 320 Austrian catchments, Hydrological Processes, 21, 435-446.
Author: Alberto Viglione [aut, cre], Juraj Parajka [aut]
Maintainer: Alberto Viglione

Diff between TUWmodel versions 0.1-2 dated 2012-12-11 and 0.1-4 dated 2014-11-10

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Package randomUniformForest updated to version 1.1.0 with previous version 1.0.9 dated 2014-11-07

Title: Random Uniform Forests for Classification, Regression and Unsupervised Learning
Description: Ensemble model, for classification, regression and unsupervised learning, based on a forest of unpruned and randomized binary decision trees.
Author: Saip Ciss
Maintainer: Saip Ciss

Diff between randomUniformForest versions 1.0.9 dated 2014-11-07 and 1.1.0 dated 2014-11-10

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Package GSIF updated to version 0.4-2 with previous version 0.4-1 dated 2014-05-29

Title: Global Soil Information Facilities
Description: Global Soil Information Facilities - tools (standards and functions) and sample datasets for global soil mapping.
Author: Tomislav Hengl [cre, aut], Bas Kempen [ctb], Gerard Heuvelink [ctb], Brendan Malone [ctb], Hannes Reuter [ctb]
Maintainer: Tomislav Hengl

Diff between GSIF versions 0.4-1 dated 2014-05-29 and 0.4-2 dated 2014-11-10

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 38 files changed, 305 insertions(+), 184 deletions(-)

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Package Rothermel updated to version 1.2 with previous version 1.1 dated 2014-04-22

Title: Rothermel fire spread model for R
Description: R build of Rothermel's (1972) model for surface fire rate of spread with some additional utilities (uncertainty propagation, standard fuel model selection, fuel model optimization by genetic algorithm) and sample datasets.
Author: Giorgio Vacchiano, Davide Ascoli
Maintainer: Giorgio Vacchiano

Diff between Rothermel versions 1.1 dated 2014-04-22 and 1.2 dated 2014-11-10

 DESCRIPTION   |    8 ++++----
 MD5           |    6 +++---
 R/gaRoth.R    |    1 +
 man/gaRoth.Rd |   31 +++++++++++++++++++++++++------
 4 files changed, 33 insertions(+), 13 deletions(-)

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Package RcmdrPlugin.NMBU updated to version 1.7.6 with previous version 1.7.5 dated 2014-09-19

Title: R Commander Plug-In for Statistics at NMBU
Description: This package provides an Rcmdr "plug-in" extending some functions of linear models and providing an interface to PLS, LDA and QDA.
Author: Kristian Hovde Liland, Solve Sæbø
Maintainer: Kristian Hovde Liland

Diff between RcmdrPlugin.NMBU versions 1.7.5 dated 2014-09-19 and 1.7.6 dated 2014-11-10

 DESCRIPTION                     |   14 +++++++-------
 MD5                             |   10 +++++-----
 NAMESPACE                       |    1 +
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 man/RcmdrPlugin.NMBU-package.Rd |    1 +
 6 files changed, 20 insertions(+), 13 deletions(-)

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Package party updated to version 1.0-18 with previous version 1.0-17 dated 2014-09-17

Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning. The core of the package is ctree(), an implementation of conditional inference trees which embed tree-structured regression models into a well defined theory of conditional inference procedures. This non-parametric class of regression trees is applicable to all kinds of regression problems, including nominal, ordinal, numeric, censored as well as multivariate response variables and arbitrary measurement scales of the covariates. Based on conditional inference trees, cforest() provides an implementation of Breiman's random forests. The function mob() implements an algorithm for recursive partitioning based on parametric models (e.g. linear models, GLMs or survival regression) employing parameter instability tests for split selection. Extensible functionality for visualizing tree-structured regression models is available.
Author: Torsten Hothorn [aut, cre], Kurt Hornik [aut], Carolin Strobl [aut], Achim Zeileis [aut]
Maintainer: Torsten Hothorn

Diff between party versions 1.0-17 dated 2014-09-17 and 1.0-18 dated 2014-11-10

 DESCRIPTION        |    8 ++++----
 MD5                |   14 +++++++-------
 R/zInitMethods.R   |    2 +-
 build/vignette.rds |binary
 inst/NEWS          |    8 ++++++++
 inst/doc/MOB.pdf   |binary
 inst/doc/party.pdf |binary
 src/Utils.c        |    7 ++++---
 8 files changed, 24 insertions(+), 15 deletions(-)

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Package ModelGood updated to version 1.0.9 with previous version 1.0.8 dated 2014-03-15

Title: Validation of risk prediction models
Description: Bootstrap cross-validation for ROC, AUC and Brier score to assess and compare predictions of binary status responses.
Author: Thomas A. Gerds
Maintainer: Thomas A. Gerds

Diff between ModelGood versions 1.0.8 dated 2014-03-15 and 1.0.9 dated 2014-11-10

 DESCRIPTION                      |   17 ---
 MD5                              |   36 +++----
 NAMESPACE                        |   58 ++++++------
 R/RocMethods.R                   |    4 
 R/Sensitivity.R                  |   65 ++++++++-----
 R/plot.Roc.R                     |    3 
 R/predictStatusProb.ElasticNet.R |    4 
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 man/AutoSelectLRM.Rd             |   18 +--
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 19 files changed, 307 insertions(+), 291 deletions(-)

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Package lpSolveAPI updated to version 5.5.2.0-13 with previous version 5.5.2.0-12 dated 2014-11-04

Title: R Interface for lp_solve version 5.5.2.0
Description: The lpSolveAPI package provides an R interface for lp_solve, a Mixed Integer Linear Programming (MILP) solver with support for pure linear, (mixed) integer/binary, semi-continuous and special ordered sets (SOS) models.
Author: lp_solve , Kjell Konis .
Maintainer: Kjell Konis

Diff between lpSolveAPI versions 5.5.2.0-12 dated 2014-11-04 and 5.5.2.0-13 dated 2014-11-10

 DESCRIPTION                |   12 ++++++------
 MD5                        |   10 +++++-----
 src/RlpSolve.c             |    2 +-
 src/lp_solve/Makefile      |    2 +-
 tests/lpSolveAPI.R         |   31 +++++++++++++++++--------------
 tests/lpSolveAPI.Rout.save |   37 +++++++++++++++++++++----------------
 6 files changed, 51 insertions(+), 43 deletions(-)

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New package ionflows with initial version 1.1
Package: ionflows
Type: Package
Title: Calculate the Number of Required Flows for Semiconductor Sequencing
Version: 1.1
Date: 2014-10-21
Author: Michael Bockmayr and Jan Budczies
Depends: Biostrings
Maintainer: Michael Bockmayr
Description: Two methods for calculation of the number of required flows for semiconductor sequencing: 1. Using a simulation, the number of flows can be calculated for a concrete list of amplicons. 2. An exact combinatorial model is evaluated to calculate the number of flows for a random ensemble of sequences.
License: GPL-3
Encoding: UTF-8
Packaged: 2014-11-09 23:24:42 UTC; mlb47
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-10 09:55:34

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Package BH updated to version 1.54.0-5 with previous version 1.54.0-4 dated 2014-08-29

Title: Boost C++ header files
Description: Boost provides free peer-reviewed portable C++ source libraries. A large part of Boost is provided as C++ template code which is resolved entirely at compile-time without linking. This package aims to provide the most useful subset of Boost libraries for template use among CRAN package. By placing these libraries in this package, we offer a more efficient distribution system for CRAN as replication of this code in the sources of other packages is avoided.
Author: Dirk Eddelbuettel, John W. Emerson and Michael J. Kane
Maintainer: Dirk Eddelbuettel

Diff between BH versions 1.54.0-4 dated 2014-08-29 and 1.54.0-5 dated 2014-11-10

 ChangeLog                                                |   11 +++++++--
 DESCRIPTION                                              |    8 +++----
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 man/BH-package.Rd                                        |    4 +--
 10 files changed, 40 insertions(+), 16 deletions(-)

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