Title: Testing randomness in R
Diff between randtests versions 0.3 dated 2014-03-19 and 1.0 dated 2014-11-16
Description: Several non parametric randomness tests for numeric sequences
Author: Frederico Caeiro and Ayana Mateus
Maintainer: Frederico Caeiro
DESCRIPTION | 8 +-
MD5 | 32 +++++----
NEWS | 7 +-
R/bartels.rank.test.R | 28 +++++---
R/cox.stuart.test.R | 3
R/misc.R |only
R/runs.R | 57 ++++++++---------
R/runs.test.R | 143 +++++++++++++++++++++++---------------------
man/bartels.rank.test.Rd | 30 +++++----
man/bartelsrank.Rd |only
man/difference.sign.test.Rd | 10 +--
man/permut.Rd |only
man/randtests-package.Rd | 11 +--
man/randtests.aux.Rd |only
man/rank.test.Rd | 2
man/runs.Rd | 26 ++++----
man/runs.test.Rd | 15 ++--
man/sweetpotato.Rd | 2
man/turning.point.test.Rd | 6 -
19 files changed, 210 insertions(+), 170 deletions(-)
Title: Multiple Contrast Profiles
Description: Calculation of signed root deviance profiles for linear combinations of parameters in a generalized linear model. Multiple tests and simultaneous confidence intervals are provided.
Author: Daniel Gerhard
Maintainer: Daniel Gerhard <00gerhard@gmail.com>
Diff between mcprofile versions 0.2-0 dated 2014-05-30 and 0.2-1 dated 2014-11-16
DESCRIPTION | 10 ++-- MD5 | 9 ++- README.md |only build/vignette.rds |binary inst/CITATION |only inst/doc/mcprofile.html | 117 ++++++++++++++++++++++++++++-------------------- man/orglm.Rd |only 7 files changed, 80 insertions(+), 56 deletions(-)
Title: Generalized Order-Restricted Information Criterion
Description: Generalized Order-Restricted Information Criterion (GORIC) value for a set of hypotheses in multivariate regression models
Author: Daniel Gerhard [aut, cre],
Rebecca M. Kuiper [aut]
Maintainer: Daniel Gerhard <00gerhard@gmail.com>
Diff between goric versions 0.0-7 dated 2012-11-28 and 0.0-8 dated 2014-11-16
DESCRIPTION | 24 +++++++++-------- MD5 | 18 +++++++----- NAMESPACE | 13 +++++++-- R/goric.R | 48 +++++++++++++++++++++++++++------- R/goric_penalty.R | 72 ++++++++++++++++++++++++++++++++++++++++++++++----- R/orglm.R |only R/orgls.R | 5 --- R/orlm.R | 1 man/goric-package.Rd | 4 +- man/goric.Rd | 24 ++++++++++++----- man/orglm.Rd |only 11 files changed, 158 insertions(+), 51 deletions(-)
Title: High-Dimensional Regression and CAR Score Variable Selection
Diff between care versions 1.1.5 dated 2014-07-28 and 1.1.6 dated 2014-11-16
Description: The "care" package implements the regression approach
of Zuber and Strimmer (2011) "High-dimensional regression and variable
selection using CAR scores" SAGMB 10: 34.
CAR scores measure the correlation between the response and the
Mahalanobis-decorrelated predictors. The squared CAR score is a
natural measure of variable importance and provides a canonical
ordering of variables. This package provides functions for estimating
CAR scores, for variable selection using CAR scores, and for estimating
corresponding regression coefficients. Both shrinkage as well as
empirical estimators are available.
Author: Verena Zuber and Korbinian Strimmer.
Maintainer: Korbinian Strimmer
DESCRIPTION | 14 ++++----
MD5 | 10 +++---
NEWS | 7 ++++
inst/doc/brain.R | 68 +++++++++++++++++++++++++++++------------
inst/doc/diabetes.R | 85 ++++++++++++++++++++++++++++++++++++++--------------
inst/doc/index.html | 2 -
6 files changed, 132 insertions(+), 54 deletions(-)
Title: R Interface to C API of GLPK
Diff between glpkAPI versions 1.2.10 dated 2014-01-08 and 1.2.11 dated 2014-11-16
Description: R Interface to C API of GLPK, needs GLPK Version >= 4.42
Author: Gabriel Gelius-Dietrich [aut, cre]
Maintainer: Gabriel Gelius-Dietrich
DESCRIPTION | 11 ++++++-----
MD5 | 40 ++++++++++++++++++++--------------------
NAMESPACE | 2 ++
R/generics.R | 2 +-
R/glpk.R | 11 ++++++-----
R/glpkAPI.R | 4 ++--
R/glpk_ptrClass.R | 2 +-
R/zzz.R | 2 +-
build/vignette.rds |binary
configure | 18 +++++++++---------
configure.ac | 2 +-
inst/INSTALL | 2 +-
inst/NEWS.Rd | 9 +++++++++
inst/doc/glpkAPI.pdf |binary
man/glpkConstants.Rd | 10 +++++++---
src/glpkAPI.c | 2 +-
src/glpkAPI.h | 2 +-
src/glpkCallback.c | 2 +-
src/glpkCallback.h | 2 +-
src/glpkR.h | 2 +-
src/init.c | 2 +-
21 files changed, 72 insertions(+), 55 deletions(-)
Title: Primal or Dual Cone Projections with Routines for Constrained
Regression
Diff between coneproj versions 1.4 dated 2014-04-26 and 1.5 dated 2014-11-16
Description: This package contains routines for cone projection and quadratic programming, as well as routines to do estimation and inference for constrained parametric regression and shape-restricted regression problems.
Author: Mary C. Meyer and Xiyue Liao
Maintainer: Xiyue Liao
DESCRIPTION | 10 +++++-----
MD5 | 15 ++++++++-------
inst |only
man/check_irred.Rd | 7 ++++++-
man/coneA.Rd | 5 ++++-
man/coneB.Rd | 2 ++
man/constreg.Rd | 9 ++++++---
man/qprog.Rd | 1 +
man/shapereg.Rd | 7 +++++--
9 files changed, 37 insertions(+), 19 deletions(-)
Title: Modeling and Inferring Gene Networks
Diff between GeneNet versions 1.2.10 dated 2014-07-28 and 1.2.11 dated 2014-11-16
Description: GeneNet is a package for analyzing gene expression
(time series) data with focus on the inference of gene networks.
In particular, GeneNet implements the methods of Schaefer and
Strimmer (2005a,b,c) and Opgen-Rhein and Strimmer (2006, 2007)
for learning large-scale gene association networks (including
assignment of putative directions).
Author: Juliane Schaefer, Rainer Opgen-Rhein, and
Korbinian Strimmer.
Maintainer: Korbinian Strimmer
DESCRIPTION | 14 +--
MD5 | 12 +--
NEWS | 4 +
inst/doc/arabidopsis-net.R | 151 ++++++++++++++++++----------------------
inst/doc/ecoli-net.R | 169 ++++++++++++++++++---------------------------
inst/doc/index.html | 4 -
inst/doc/tcell-net.R | 121 +++++++++++++++-----------------
7 files changed, 216 insertions(+), 259 deletions(-)
Title: Multivariate Normality Tests
Diff between MVN versions 3.6 dated 2014-11-14 and 3.7 dated 2014-11-16
Description: Assessing the assumption of multivariate normality is required by many parametric multivariate statistical methods, such as discriminant analysis, principal component analysis, MANOVA, etc. Here, we present an R package to asses multivariate normality. The MVN package contains three widely used multivariate normality tests, including Mardia's, Henze-Zirkler's, Royston's, graphical approaches, including chi-square Q-Q plot, perspective plot and contour plot and two outlier detection methods based on Mahalanobis distance. We have also developed web-tool version of the package which is available at http://www.biosoft.hacettepe.edu.tr/MVN/.
Author: Selcuk Korkmaz [aut, cre], Dincer Goksuluk [aut], Gokmen Zararsiz [aut]
Maintainer: Selcuk Korkmaz
DESCRIPTION | 20 ++---
MD5 | 36 +++++----
NAMESPACE | 15 ++-
R/uniNorm.R |only
R/uniPlot.R |only
build/vignette.rds |binary
inst/doc/MVN.R | 197 ++++++++++++++++++++++++++++-----------------------
inst/doc/MVN.Rnw | 44 ++++++-----
inst/doc/MVN.pdf |binary
man/MVN-package.Rd | 2
man/hz-class.Rd | 2
man/hzTest.Rd | 8 +-
man/mardia-class.Rd | 2
man/mardiaTest.Rd | 8 +-
man/mvOutlier.Rd | 8 +-
man/mvnPlot.Rd | 8 +-
man/royston-class.Rd | 2
man/roystonTest.Rd | 9 +-
man/uniNorm.Rd |only
man/uniPlot.Rd |only
vignettes/MVN.Rnw | 44 ++++++-----
21 files changed, 230 insertions(+), 175 deletions(-)
Title: Fixed Size Subset Sum Solution
Diff between FLSSS versions 3.0 dated 2014-10-22 and 3.1 dated 2014-11-16
Description: Solve an approximate Subset Sum Problem via a recursive compression algorithm
Author: Charlie Wusuo Liu
Maintainer: Charlie Wusuo Liu
FLSSS-3.0/FLSSS/R/FLSSS_20141021.r |only
FLSSS-3.0/FLSSS/src/FLSSS_20141021.cpp |only
FLSSS-3.1/FLSSS/DESCRIPTION | 10 +++++-----
FLSSS-3.1/FLSSS/MD5 | 10 +++++-----
FLSSS-3.1/FLSSS/NAMESPACE | 8 ++++++++
FLSSS-3.1/FLSSS/R/FLSSS_20141116.r |only
FLSSS-3.1/FLSSS/man/FLSSS-package.Rd | 28 ++++++++++++++--------------
FLSSS-3.1/FLSSS/src/FLSSS_20141115.cpp |only
8 files changed, 32 insertions(+), 24 deletions(-)