Title: R binder for the Yhat API
Diff between yhatr versions 0.12.1 dated 2014-07-19 and 0.13.1 dated 2014-11-21
Description: yhatr lets you deploy, maintain, and invoke models via the Yhat
REST API.
Author: Greg Lamp
Maintainer: Greg Lamp
DESCRIPTION | 6 -
MD5 | 42 +++++-----
NAMESPACE | 4 -
NEWS | 14 +++
R/yhatR.R | 143 ++++++++++++++++++++++++++++++++-----
man/capture.src.Rd | 2
man/check.dependencies.Rd | 2
man/check.image.size.Rd | 2
man/yhat.deploy.Rd | 2
man/yhat.deploy.to.file.Rd | 2
man/yhat.deploy.with.scp.Rd | 2
man/yhat.get.Rd | 2
man/yhat.ls.Rd | 2
man/yhat.post.Rd | 7 +
man/yhat.predict.Rd | 10 ++
man/yhat.predict_raw.Rd | 10 ++
man/yhat.scaffolding.Rd | 2
man/yhat.show_models.Rd | 2
man/yhat.spider.block.Rd | 2
man/yhat.spider.func.Rd | 2
man/yhat.test_predict.Rd |only
man/yhat.transform_from_example.Rd |only
man/yhat.verify.Rd | 2
23 files changed, 203 insertions(+), 59 deletions(-)
Title: Analytical Tools for Radiation Oncology
Diff between RadOnc versions 1.0.8 dated 2014-05-31 and 1.0.9 dated 2014-11-21
Description: This package is designed for the import, analysis, and visualization of dosimetric and volumetric data in Radiation Oncology. The tools herein enable import of DVH information from Varian's Aria/Eclipse platform and 3D structural representations and dosimetric information from DICOM-RT files. These tools also enable subsequent visualization and statistical analysis of these data.
Author: Reid F. Thompson
Maintainer: Reid F. Thompson
DESCRIPTION | 8 +--
MD5 | 50 +++++++++----------
NAMESPACE | 18 ------
R/CLASSES.R | 13 +++-
R/DVH.R | 30 ++++++++++-
R/calculate.DVH.R | 25 +++++++--
R/plot.DVH.R | 133 ++++++++++++++++++++++++++++++---------------------
R/read.DICOM.RT.R | 8 +--
R/read.DVH.R | 11 +++-
R/structure.list.R | 4 +
R/structure3D.R | 2
R/t.test.DVH.R | 3 +
R/wilcox.DVH.R | 10 +++
build/vignette.rds |binary
data/RadOnc.RData |binary
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inst/NEWS.Rd | 42 ++++++++++++++++
inst/doc/RadOnc.R | 116 +++++++++++++++++++++++---------------------
inst/doc/RadOnc.Rnw | 16 ++++--
inst/doc/RadOnc.pdf |binary
man/DVH-class.Rd | 5 +
man/RadOnc.Rd | 28 ++++++++++
man/plot-methods.Rd | 16 +++++-
man/read.DVH.Rd | 6 +-
vignettes/RadOnc.Rnw | 16 ++++--
vignettes/RadOnc.bib | 11 ++++
26 files changed, 384 insertions(+), 187 deletions(-)
Title: R interface to the PX-Web/PC-Axis API
Diff between pxweb versions 0.4 dated 2014-09-04 and 0.5.2 dated 2014-11-21
Description: Generic interface for the PX-Web/PC-Axis API. The PX-Web/PC-Axis
API is used by organizations such as Statistics Sweden and Statistics
Finland to disseminate data. The R package can interact with all
PX-Web/PC-Axis APIs to fetch information about the data hierarchy, extract
metadata and extract and parse statistics to R data.frame format. PX-Web is
a solution to disseminate PC-Axis data files in dynamic tables on the web.
Since 2013 PX-Web contains an API to disseminate PC-Axis files.
PX-Web/PC-Axis API information can be found at:
http://www.scb.se/Grupp/OmSCB/API/API-description.pdf
Author: Mans Magnusson, Leo Lahti, Love Hansson
Maintainer: Mans Magnusson
pxweb-0.4/pxweb/inst/tests |only
pxweb-0.5.2/pxweb/DESCRIPTION | 9
pxweb-0.5.2/pxweb/MD5 | 157 +++--
pxweb-0.5.2/pxweb/NAMESPACE | 7
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pxweb-0.5.2/pxweb/R/api_parameters.R | 20
pxweb-0.5.2/pxweb/R/base_url.R | 22
pxweb-0.5.2/pxweb/R/firstlib.R | 4
pxweb-0.5.2/pxweb/R/get_pxweb_data.R | 7
pxweb-0.5.2/pxweb/R/get_pxweb_data_internal.R | 10
pxweb-0.5.2/pxweb/R/get_pxweb_dims.R | 2
pxweb-0.5.2/pxweb/R/get_pxweb_metadata.R | 6
pxweb-0.5.2/pxweb/R/interactive_pxweb.R | 35 -
pxweb-0.5.2/pxweb/R/interactive_pxweb_internal.R | 93 +++
pxweb-0.5.2/pxweb/R/pxweb.R | 2
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pxweb-0.5.2/pxweb/R/test_pxweb_api.R | 19
pxweb-0.5.2/pxweb/R/test_pxweb_api_internal.R | 1
pxweb-0.5.2/pxweb/R/utils_internal.R | 15
pxweb-0.5.2/pxweb/README.md | 106 ---
pxweb-0.5.2/pxweb/build/vignette.rds |binary
pxweb-0.5.2/pxweb/inst/doc/pxweb.R | 49 +
pxweb-0.5.2/pxweb/inst/doc/pxweb.Rmd | 84 ++-
pxweb-0.5.2/pxweb/inst/doc/pxweb.html | 390 +++++---------
pxweb-0.5.2/pxweb/inst/doc/pxweb.md | 121 +++-
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pxweb-0.5.2/pxweb/man/calc_dim_type.Rd | 2
pxweb-0.5.2/pxweb/man/calculate_data_dim.Rd | 2
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pxweb-0.5.2/pxweb/man/get_pxweb_levels.Rd | 2
pxweb-0.5.2/pxweb/man/get_pxweb_metadata.Rd | 4
pxweb-0.5.2/pxweb/man/interactive_pxweb.Rd | 19
pxweb-0.5.2/pxweb/man/print.api_parameters.Rd | 2
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pxweb-0.5.2/pxweb/man/test_pxweb_api_get_nodes.Rd | 2
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68 files changed, 819 insertions(+), 584 deletions(-)
Title: Computation of Power and Level Tables for Hypothesis Tests
Diff between PoweR versions 1.0.3 dated 2014-10-07 and 1.0.4 dated 2014-11-21
Description: Functions for the computation of power and level tables for hypothesis tests, in LaTeX format, functions to build explanatory graphs for studying power of test statistics.
Author: Pierre Lafaye de Micheaux
Maintainer: P. Lafaye de Micheaux
DESCRIPTION | 8 +-
MD5 | 22 +++----
R/compquant.R | 8 +-
R/many.crit.R | 23 ++++---
R/powcomp-fast.R | 6 -
inst/HISTORY | 10 ++-
inst/printTemplates/print.power1.R | 20 ++++--
man/Laplace.tests.Rd | 2
man/many.crit.Rd | 16 ++---
man/many.pval.Rd | 17 ++---
src/calcpuiss.cpp | 4 -
src/calcpuissRcpp.cpp | 116 +++++++++++++++++++++++++++----------
12 files changed, 167 insertions(+), 85 deletions(-)
Title: Compares the Distribution of Sister Clades Through a Phylogeny
Diff between nodiv versions 0.9.2 dated 2014-11-18 and 0.9.3 dated 2014-11-21
Description: An implementation of the nodiv algorithm, (see Borregaard, M.K., Rahbek, C., Fjeldsaa, J., Parra, J.L., Whittaker, R.J. & Graham, C.H. 2014. Node-based analysis of species distributions. Methods in Ecology and Evolution). DOI: 10.1111/2041-210X.12283. Package for phylogenetic analysis of species distributions. The main function goes through each node in the phylogeny, compares the distributions of the two descendant nodes, and compares the result to a null model. This highlights nodes where major distributional divergence have occurred. The distributional divergence for these nodes is mapped using the SOS statistic.
Author: Michael Krabbe Borregaard
Maintainer: Michael Krabbe Borregaard
DESCRIPTION | 12 ++++++-----
MD5 | 26 ++++++++++++-------------
NAMESPACE | 2 -
R/General_figure_functions.R | 6 +++--
R/Methods_for_data_objects.R | 7 +++---
R/Node_analysis_function.R | 43 ++++++++++++++++++------------------------
R/Node_based_analysis.R | 44 +++++++++++++++++++++++++++----------------
R/Nodesig_function.R | 9 ++++++--
R/Prepare_data.R | 34 ++++++++++++++++++++++-----------
man/Node_analysis.Rd | 6 ++++-
man/Node_size.Rd | 11 ++++++----
man/distrib_data.Rd | 4 ++-
man/plotSOS.Rd | 2 -
man/plot_richness.Rd | 5 +++-
14 files changed, 126 insertions(+), 85 deletions(-)
Title: Routines for Fitting Kinetic Models with One or More State
Variables to Chemical Degradation Data
Diff between mkin versions 0.9-33 dated 2014-10-11 and 0.9-34 dated 2014-11-21
Description: Calculation routines based on the FOCUS Kinetics Report (2006).
Includes a function for conveniently defining differential equation models,
model solution based on eigenvalues if possible or using numerical solvers
and a choice of the optimisation methods made available by the FME package.
Please note that no warranty is implied for correctness of results or fitness
for a particular purpose.
Author: Johannes Ranke [aut, cre, cph],
Katrin Lindenberger [ctb],
René Lehmann [ctb],
Eurofins Regulatory AG [cph]
Maintainer: Johannes Ranke
mkin-0.9-33/mkin/NEWS |only
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mkin-0.9-34/mkin/R/mkin_wide_to_long.R | 2
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mkin-0.9-34/mkin/R/mkinmod.R | 54 +
mkin-0.9-34/mkin/R/mkinparplot.R | 8
mkin-0.9-34/mkin/R/mkinpredict.R | 10
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mkin-0.9-34/mkin/README.md | 25
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mkin-0.9-34/mkin/inst/doc/FOCUS_Z.R | 13
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37 files changed, 648 insertions(+), 535 deletions(-)
Title: Beta Product Confidence Procedure for Right Censored Data
Diff between bpcp versions 1.1.0 dated 2014-04-30 and 1.2.4 dated 2014-11-21
Description: Calculates nonparametric pointwise confidence intervals for the survival distribution for right censored data. Has two-sample tests for dissimilarity (e.g., difference, ratio or odds ratio) in survival at a fixed time. Especially important for small sample sizes or heavily censored data. Includes mid-p options.
Author: Michael P. Fay
Maintainer: Michael P. Fay
DESCRIPTION | 10
MD5 | 24 -
NAMESPACE | 5
NEWS | 15 +
R/bpcp2sample.R | 404 +++++++++++++++++++++++++++----
R/kmciFunctions.R | 618 ++++++++++++++++++++++++++++++++++--------------
man/StCI.Rd | 11
man/bpcp-internal.Rd | 40 ++-
man/bpcp-package.Rd | 4
man/bpcp2samp.Rd | 12
man/bpcp2sampControl.Rd | 12
man/kmciALL.Rd | 17 -
man/sclerosis.Rd | 6
13 files changed, 917 insertions(+), 261 deletions(-)
Title: Bayesian Fertility Projection
Diff between bayesTFR versions 4.0-9 dated 2014-11-07 and 4.0-11 dated 2014-11-21
Description: Making probabilistic projections of total fertility rate for all countries of the world, using a Bayesian hierarchical model.
Author: Hana Sevcikova (hanas@uw.edu), Leontine Alkema (alkema@nus.edu.sg), Adrian Raftery (raftery@uw.edu) with code contribution from Bailey Fosdick (bfosdick@uw.edu) and Patrick Gerland (gerland@un.org)
Maintainer: Hana Sevcikova
ChangeLog | 12 +++++++++++-
DESCRIPTION | 12 ++++++------
MD5 | 16 ++++++++--------
R/predict_tfr.R | 2 +-
R/run_mcmc.R | 8 ++++----
data/iso3166.txt | 3 ++-
man/bayesTFR-package.Rd | 4 ++--
man/run-mcmc.Rd | 4 ++--
tests/test_functions.R | 2 +-
9 files changed, 37 insertions(+), 26 deletions(-)
Title: Fractional ARIMA Time Series Modeling
Diff between arfima versions 1.2-6 dated 2014-07-01 and 1.2-7 dated 2014-11-21
Description: Simulates, fits, and predicts long-memory and anti-persistent time series, possibly mixed with ARMA, regression, transfer-function components. Exact methods (MLE, forecasting simulation) are used.
Author: Justin Q. Veenstra, A.I. McLeod
Maintainer: A.I. McLeod
DESCRIPTION | 8 ++++----
MD5 | 11 ++++++-----
NAMESPACE | 2 +-
R/arfima.R | 23 +++++++++++++++++++++++
R/arfimaFit.R | 14 +++++++-------
R/tacf.R | 2 +-
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7 files changed, 42 insertions(+), 18 deletions(-)
Title: A tool set for political behaviour data
Diff between SciencesPo versions 0.05.21 dated 2014-05-27 and 0.11.21 dated 2014-11-21
Description: SciencesPo is a facility package for the political science crowd. It provides sound functions for analyzing random and nonrandom data, future updates will focus on innovative techniques published on relevant journals in the field of political science.
Author: Daniel Marcelino
Maintainer: Daniel Marcelino
SciencesPo-0.05.21/SciencesPo/R/SciencesPo-internal.R |only
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SciencesPo-0.11.21/SciencesPo/man/soundexBR.Rd | 34 ++--
SciencesPo-0.11.21/SciencesPo/man/theme_minimalist.Rd |only
SciencesPo-0.11.21/SciencesPo/man/tobaccovote.Rd |only
SciencesPo-0.11.21/SciencesPo/man/unnest.Rd |only
SciencesPo-0.11.21/SciencesPo/man/vreplace.Rd |only
98 files changed, 305 insertions(+), 284 deletions(-)
Title: Quantile-based Spectral Analysis of Time Series
Diff between quantspec versions 1.0-1 dated 2014-06-05 and 1.0-2 dated 2014-11-21
Description: Methods to determine, smooth and plot quantile (i. e., Laplace or
copula) periodograms for univariate time series.
Author: Tobias Kley [aut, cre]
Maintainer: Tobias Kley
quantspec-1.0-1/quantspec/inst/tests |only
quantspec-1.0-1/quantspec/tests/test-all.R |only
quantspec-1.0-2/quantspec/DESCRIPTION | 21
quantspec-1.0-2/quantspec/MD5 | 210 +--
quantspec-1.0-2/quantspec/NAMESPACE | 6
quantspec-1.0-2/quantspec/NEWS | 9
quantspec-1.0-2/quantspec/R/Class-SmoothedPG.R | 156 +-
quantspec-1.0-2/quantspec/R/RcppExports.R |only
quantspec-1.0-2/quantspec/R/aux-functions.R | 3
quantspec-1.0-2/quantspec/R/deprecated.R | 444 +++---
quantspec-1.0-2/quantspec/R/quantspec-package.R | 9
quantspec-1.0-2/quantspec/build/vignette.rds |binary
quantspec-1.0-2/quantspec/cleanup |only
quantspec-1.0-2/quantspec/inst/doc/quantspec.R | 182 +-
quantspec-1.0-2/quantspec/inst/doc/quantspec.Rnw | 151 +-
quantspec-1.0-2/quantspec/inst/doc/quantspec.pdf |binary
quantspec-1.0-2/quantspec/inst/examples/SmoothedPG-SpecDistr.R | 1
quantspec-1.0-2/quantspec/inst/extdata/ref-results.rdata |binary
quantspec-1.0-2/quantspec/man/BootPos-class.Rd | 30
quantspec-1.0-2/quantspec/man/ClippedFT-class.Rd | 34
quantspec-1.0-2/quantspec/man/ClippedFT-constructor.Rd | 62
quantspec-1.0-2/quantspec/man/FreqRep-class.Rd | 94 -
quantspec-1.0-2/quantspec/man/IntegrQuantileSD-class.Rd | 25
quantspec-1.0-2/quantspec/man/IntegrQuantileSD-constructor.Rd | 62
quantspec-1.0-2/quantspec/man/KernelWeight-class.Rd | 32
quantspec-1.0-2/quantspec/man/KernelWeight-constructor.Rd | 14
quantspec-1.0-2/quantspec/man/MovingBlocks-class.Rd | 25
quantspec-1.0-2/quantspec/man/MovingBlocks-constructor.Rd | 8
quantspec-1.0-2/quantspec/man/QRegEstimator-class.Rd | 40
quantspec-1.0-2/quantspec/man/QRegEstimator-constructor.Rd | 58
quantspec-1.0-2/quantspec/man/QSpecQuantity-class.Rd | 29
quantspec-1.0-2/quantspec/man/QuantilePG-class.Rd | 41
quantspec-1.0-2/quantspec/man/QuantilePG-constructor.Rd | 89 -
quantspec-1.0-2/quantspec/man/QuantileSD-class.Rd | 83 -
quantspec-1.0-2/quantspec/man/QuantileSD-constructor.Rd | 51
quantspec-1.0-2/quantspec/man/SmoothedPG-class.Rd | 47
quantspec-1.0-2/quantspec/man/SmoothedPG-constructor.Rd | 91 -
quantspec-1.0-2/quantspec/man/SpecDistrWeight-class.Rd | 18
quantspec-1.0-2/quantspec/man/SpecDistrWeight-constructor.Rd | 7
quantspec-1.0-2/quantspec/man/Weight-class.Rd | 13
quantspec-1.0-2/quantspec/man/closest.pos.Rd | 27
quantspec-1.0-2/quantspec/man/data-sp500.Rd | 7
quantspec-1.0-2/quantspec/man/data-wheatprices.Rd | 34
quantspec-1.0-2/quantspec/man/frequenciesValidator.Rd | 55
quantspec-1.0-2/quantspec/man/generics-accessors.Rd | 22
quantspec-1.0-2/quantspec/man/generics-associations.Rd | 21
quantspec-1.0-2/quantspec/man/generics-functions.Rd | 19
quantspec-1.0-2/quantspec/man/getB-FreqRep.Rd | 8
quantspec-1.0-2/quantspec/man/getBootPos-FreqRep.Rd | 6
quantspec-1.0-2/quantspec/man/getBw-KernelWeight.Rd | 9
quantspec-1.0-2/quantspec/man/getDescr-Weight.Rd | 5
quantspec-1.0-2/quantspec/man/getFreqRep-QuantilePG.Rd | 6
quantspec-1.0-2/quantspec/man/getFrequencies-FreqRep.Rd | 12
quantspec-1.0-2/quantspec/man/getFrequencies-QSpecQuantity.Rd | 11
quantspec-1.0-2/quantspec/man/getIsRankBased-FreqRep.Rd | 8
quantspec-1.0-2/quantspec/man/getLevels-FreqRep.Rd | 9
quantspec-1.0-2/quantspec/man/getLevels-QSpecQuantity.Rd | 13
quantspec-1.0-2/quantspec/man/getMeanPG-QuantileSD.Rd | 22
quantspec-1.0-2/quantspec/man/getN-QuantileSD.Rd | 8
quantspec-1.0-2/quantspec/man/getParallel-QRegEstimator.Rd | 11
quantspec-1.0-2/quantspec/man/getPointwiseCIs-SmoothedPG.Rd | 81 -
quantspec-1.0-2/quantspec/man/getPositions-MovingBlocks.Rd | 15
quantspec-1.0-2/quantspec/man/getQuantilePG-QuantileSD.Rd | 9
quantspec-1.0-2/quantspec/man/getQuantilePG-SmoothedPG.Rd | 8
quantspec-1.0-2/quantspec/man/getQuantileSD-IntegrQuantileSD.Rd | 6
quantspec-1.0-2/quantspec/man/getR-QuantileSD.Rd | 8
quantspec-1.0-2/quantspec/man/getSdBoot-SmoothedPG.Rd | 67
quantspec-1.0-2/quantspec/man/getSdNaive-SmoothedPG.Rd | 79 -
quantspec-1.0-2/quantspec/man/getStdError-QuantileSD.Rd | 22
quantspec-1.0-2/quantspec/man/getTs-QuantileSD.Rd | 8
quantspec-1.0-2/quantspec/man/getType-QuantileSD.Rd | 7
quantspec-1.0-2/quantspec/man/getValues-FreqRep.Rd | 50
quantspec-1.0-2/quantspec/man/getValues-IntegrQuantileSD.Rd | 37
quantspec-1.0-2/quantspec/man/getValues-KernelWeight.Rd | 23
quantspec-1.0-2/quantspec/man/getValues-QuantilePG.Rd | 61
quantspec-1.0-2/quantspec/man/getValues-QuantileSD.Rd | 40
quantspec-1.0-2/quantspec/man/getValues-SmoothedPG.Rd | 45
quantspec-1.0-2/quantspec/man/getValues-SpecDistrWeight.Rd | 24
quantspec-1.0-2/quantspec/man/getW-KernelWeight.Rd | 8
quantspec-1.0-2/quantspec/man/getWeight-SmoothedPG.Rd | 8
quantspec-1.0-2/quantspec/man/getWnj-KernelWeight.Rd | 14
quantspec-1.0-2/quantspec/man/getY-FreqRep.Rd | 8
quantspec-1.0-2/quantspec/man/increasePrecision-QuantileSD.Rd | 20
quantspec-1.0-2/quantspec/man/is.wholenumber.Rd | 11
quantspec-1.0-2/quantspec/man/kernels.Rd | 28
quantspec-1.0-2/quantspec/man/plot-FreqRep.Rd | 28
quantspec-1.0-2/quantspec/man/plot-IntegrQuantileSD.Rd | 63
quantspec-1.0-2/quantspec/man/plot-KernelWeight.Rd | 29
quantspec-1.0-2/quantspec/man/plot-QuantilePG.Rd | 93 -
quantspec-1.0-2/quantspec/man/plot-QuantileSD.Rd | 63
quantspec-1.0-2/quantspec/man/plot-SmoothedPG.Rd | 123 -
quantspec-1.0-2/quantspec/man/plot-SpecDistrWeight.Rd | 22
quantspec-1.0-2/quantspec/man/quantspec-defunct.Rd | 41
quantspec-1.0-2/quantspec/man/quantspec-package.Rd | 168 +-
quantspec-1.0-2/quantspec/man/timeSeriesValidator.Rd | 16
quantspec-1.0-2/quantspec/man/ts-models-AR1.Rd | 26
quantspec-1.0-2/quantspec/man/ts-models-AR2.Rd | 29
quantspec-1.0-2/quantspec/man/ts-models-ARCH1.Rd | 29
quantspec-1.0-2/quantspec/man/ts-models-QAR1.Rd | 26
quantspec-1.0-2/quantspec/man/ts-models.Rd | 25
quantspec-1.0-2/quantspec/src |only
quantspec-1.0-2/quantspec/tests/testthat |only
quantspec-1.0-2/quantspec/tests/testthat.R |only
quantspec-1.0-2/quantspec/vignettes/quantspec-refs.bib | 684 ++++------
quantspec-1.0-2/quantspec/vignettes/quantspec.Rnw | 151 +-
105 files changed, 2355 insertions(+), 2406 deletions(-)
Title: Permutation Distribution Clustering
Diff between pdc versions 1.0.1 dated 2014-11-10 and 1.0.2 dated 2014-11-21
Description: Permutation Distribution Clustering is a clustering method for time series. Dissimilarity of time series is formalized as the divergence between their permutation distributions. The permutation distribution was proposed as measure of the complexity of a time series.
Author: Andreas M. Brandmaier
Maintainer: Andreas M. Brandmaier
DESCRIPTION | 8 ++++----
MD5 | 28 +++++++++++++++-------------
NEWS | 6 ++++++
R/loo1nn.R | 4 ++--
R/plot.pdclust.R | 41 ++---------------------------------------
R/rasterPlot.R |only
data/star.shapes.raw.rda |binary
data/star.shapes.rda |binary
inst |only
man/complex.shapes.Rd | 4 ++--
man/entropy.heuristic.Rd | 2 +-
man/mds.plot.Rd | 4 ++--
man/pdc-package.Rd | 6 ++----
man/pdclust.Rd | 4 ++--
man/rasterPlot.Rd | 7 ++++---
man/star.shapes.Rd | 4 ++--
16 files changed, 44 insertions(+), 74 deletions(-)
Title: Multiple Aggregation Prediction Algorithm
Diff between MAPA versions 1.8 dated 2014-10-03 and 1.9 dated 2014-11-21
Description: This package contains functions and wrappers for using the Multiple Aggregation Prediction Algorithm (MAPA) for time series forecasting. MAPA models and forecasts time series at multiple temporal aggregation levels, thus strengthening and attenuating the various time series components for better holistic estimation of its structure.
Author: Nikolaos Kourentzes and Fotios Petropoulos
Maintainer: Nikolaos Kourentzes
ChangeLog | 4 ++++
DESCRIPTION | 10 +++++-----
MD5 | 6 +++---
R/MAPA.R | 4 ++--
4 files changed, 14 insertions(+), 10 deletions(-)
Title: Tests in Linear Mixed Effects Models
Diff between lmerTest versions 2.0-11 dated 2014-07-24 and 2.0-20 dated 2014-11-21
Description: Tests on lmer objects (of lme4 package).
The tests comprise type 3 and type 1 F tests with approximation
methods for degrees of freedom for the
fixed effects, LR tests for the random effects, calculation of
population means for fixed factors with confidence intervals
and corresponding plots. Package also provides backward
elimination of non-significant effects
Author: Alexandra Kuznetsova [aut, cre],
Per Bruun Brockhoff [aut, ths],
Rune Haubo Bojesen Christensen [aut]
Maintainer: Alexandra Kuznetsova
DESCRIPTION | 25
MD5 | 80 +
NAMESPACE | 6
R/classes.R | 2
R/devfuns.R |only
R/devfunsExtra.R |only
R/devfunsLmerTest.R |only
R/generalFunctions.R |only
R/lmerTestFunctions.R | 660 +++---------
R/lsmeans.R |only
R/randelim.R | 244 +---
R/utils.R | 1823 +++++-----------------------------
R/vcconv.R |only
inst/testdata |only
man/anova-methods.Rd | 6
man/difflsmeans.Rd | 6
man/lmer.Rd | 1
man/lmerTest-package.Rd | 3
man/lsmeans.Rd | 5
man/merModLmerTest-class.Rd | 4
man/rand.Rd | 2
man/step.Rd | 28
man/summary-methods.Rd | 19
tests/DamonData.R |only
tests/Examples/lmerTest-Ex.Rout.save | 280 +++--
tests/MAMSatterthKR.R |only
tests/MAMex.R |only
tests/NSstd.R |only
tests/OneFixedEff.R |only
tests/bugRand.R |only
tests/bugRefit.R |only
tests/bugUpdate.R |only
tests/bugstep.R |only
tests/convergeTest.R |only
tests/envir.R |only
tests/formulas.R |only
tests/lmerMod.R |only
tests/packageExamplesExtra.R |only
tests/packageExamplesExtra.Rout.save |only
tests/rankDeficiency.R |only
tests/rankDeficiency2.R |only
tests/summary.R |only
tests/summaryDDF.R |only
tests/test-all.R |only
tests/testANCOVA.R |only
tests/testContrasts.R |only
tests/testExamplesFromPaper.R |only
tests/testExamplesFromPaper.Rout.save |only
tests/testKeep.R |only
tests/testKeep.Rout.save |only
tests/testNamesDDF.R |only
tests/testRand.R |only
tests/testRand.Rout.save |only
tests/testSlopesFactors.R |only
tests/testTVbo.R |only
tests/testTVbo.Rout.save |only
tests/zeroDenom.R |only
57 files changed, 867 insertions(+), 2327 deletions(-)
Title: Analyze and Gaussianize heavy-tailed, skewed data
Diff between LambertW versions 0.2.9.9.5 dated 2014-03-09 and 0.5 dated 2014-11-21
Description: Lambert W x F distributions are a generalized framework to analyze
skewed, heavy-tailed data. They are based on an input/output system, where
the input random variable (RV) X ~ F, and the output Y is a non-linearly
transformed version of X with similar properties, but slightly skewed and/or
heavy-tailed. This transformed RV Y has a Lambert W x F distribution.
This package contains functions to model and analyze skewed, heavy-tailed
data the Lambert Way: simulate random samples, estimate parameters, compute
quantiles, and plot/print results nicely. Probably the most important
function is 'Gaussianize', which works similarly to 'scale', but actually
makes the data Gaussian. A do-it-yourself toolkit allows users to define
their own Lambert W x 'MyFavoriteDistribution' and use it in their analysis
right away.
Author: Georg M. Goerg
Maintainer: Georg M. Goerg
LambertW-0.2.9.9.5/LambertW/R/G.R |only
LambertW-0.2.9.9.5/LambertW/R/G_2delta_alpha.R |only
LambertW-0.2.9.9.5/LambertW/R/IGMM.default.R |only
LambertW-0.2.9.9.5/LambertW/R/MLE_LambertW.default.R |only
LambertW-0.2.9.9.5/LambertW/R/MLE_LambertW_new.R |only
LambertW-0.2.9.9.5/LambertW/R/MLE_LambertW_new.default.R |only
LambertW-0.2.9.9.5/LambertW/R/W.R |only
LambertW-0.2.9.9.5/LambertW/R/W_1.R |only
LambertW-0.2.9.9.5/LambertW/R/W_2delta.R |only
LambertW-0.2.9.9.5/LambertW/R/W_2delta_alpha.R |only
LambertW-0.2.9.9.5/LambertW/R/W_delta.R |only
LambertW-0.2.9.9.5/LambertW/R/W_delta_alpha.R |only
LambertW-0.2.9.9.5/LambertW/R/W_gamma.R |only
LambertW-0.2.9.9.5/LambertW/R/W_gamma_1.R |only
LambertW-0.2.9.9.5/LambertW/R/beta_names.R |only
LambertW-0.2.9.9.5/LambertW/R/bounds_theta.R |only
LambertW-0.2.9.9.5/LambertW/R/d1W.R |only
LambertW-0.2.9.9.5/LambertW/R/d1W_1.R |only
LambertW-0.2.9.9.5/LambertW/R/d1W_delta.R |only
LambertW-0.2.9.9.5/LambertW/R/d1W_delta_alpha.R |only
LambertW-0.2.9.9.5/LambertW/R/get.input.R |only
LambertW-0.2.9.9.5/LambertW/R/p_1.R |only
LambertW-0.2.9.9.5/LambertW/R/params2theta.R |only
LambertW-0.2.9.9.5/LambertW/R/restrict_theta.R |only
LambertW-0.2.9.9.5/LambertW/R/sd.R |only
LambertW-0.2.9.9.5/LambertW/R/skewness_test.R |only
LambertW-0.2.9.9.5/LambertW/R/starting_theta.R |only
LambertW-0.2.9.9.5/LambertW/R/support.R |only
LambertW-0.2.9.9.5/LambertW/R/theta2params.R |only
LambertW-0.2.9.9.5/LambertW/R/vec.norm.R |only
LambertW-0.2.9.9.5/LambertW/man/AA.Rd |only
LambertW-0.2.9.9.5/LambertW/man/G.Rd |only
LambertW-0.2.9.9.5/LambertW/man/LambertW-internal.Rd |only
LambertW-0.2.9.9.5/LambertW/man/LambertW-methods.Rd |only
LambertW-0.2.9.9.5/LambertW/man/LambertW_input-methods.Rd |only
LambertW-0.2.9.9.5/LambertW/man/LambertW_output-methods.Rd |only
LambertW-0.2.9.9.5/LambertW/man/SolarFlares.Rd |only
LambertW-0.2.9.9.5/LambertW/man/U-methods.Rd |only
LambertW-0.2.9.9.5/LambertW/man/beta-methods.Rd |only
LambertW-0.2.9.9.5/LambertW/man/create_LambertW_input.Rd |only
LambertW-0.2.9.9.5/LambertW/man/create_LambertW_output.Rd |only
LambertW-0.2.9.9.5/LambertW/man/get.input.Rd |only
LambertW-0.2.9.9.5/LambertW/man/loglik-utils.Rd |only
LambertW-0.2.9.9.5/LambertW/man/p_1.Rd |only
LambertW-0.2.9.9.5/LambertW/man/skewness_test.Rd |only
LambertW-0.2.9.9.5/LambertW/man/support.Rd |only
LambertW-0.2.9.9.5/LambertW/man/vec.norm.Rd |only
LambertW-0.5/LambertW/DESCRIPTION | 28 -
LambertW-0.5/LambertW/MD5 | 241 ++++-----
LambertW-0.5/LambertW/NAMESPACE | 99 +++
LambertW-0.5/LambertW/NEWS |only
LambertW-0.5/LambertW/R/0_LambertW-toolkit.R |only
LambertW-0.5/LambertW/R/0_LambertW-utils.R |only
LambertW-0.5/LambertW/R/0_LambertW_fit-methods.R |only
LambertW-0.5/LambertW/R/0_LambertW_input_output-methods.R |only
LambertW-0.5/LambertW/R/0_U-utils.R |only
LambertW-0.5/LambertW/R/0_W.R |only
LambertW-0.5/LambertW/R/0_W_delta.R |only
LambertW-0.5/LambertW/R/0_W_gamma.R |only
LambertW-0.5/LambertW/R/0_beta-utils.R |only
LambertW-0.5/LambertW/R/0_distname-utils.R |only
LambertW-0.5/LambertW/R/0_loglik-LambertW-utils.R |only
LambertW-0.5/LambertW/R/0_tau-utils.R |only
LambertW-0.5/LambertW/R/0_theta-utils.R |only
LambertW-0.5/LambertW/R/G_delta_alpha.R | 86 +++
LambertW-0.5/LambertW/R/Gaussianize.R | 345 +++++++++++--
LambertW-0.5/LambertW/R/H.R | 29 -
LambertW-0.5/LambertW/R/H_gamma.R | 37 +
LambertW-0.5/LambertW/R/IGMM.R | 274 ++++++++++
LambertW-0.5/LambertW/R/LambertW-package.R |only
LambertW-0.5/LambertW/R/MLE_LambertW.R | 298 +++++++++++
LambertW-0.5/LambertW/R/beta2tau.R | 139 ++---
LambertW-0.5/LambertW/R/check_beta.R |only
LambertW-0.5/LambertW/R/check_distname.R |only
LambertW-0.5/LambertW/R/check_tau.R |only
LambertW-0.5/LambertW/R/check_theta.R | 56 +-
LambertW-0.5/LambertW/R/common-arguments.R |only
LambertW-0.5/LambertW/R/complete_tau.R |only
LambertW-0.5/LambertW/R/complete_theta.R | 74 ++
LambertW-0.5/LambertW/R/create_LambertW_input.R | 212 +++++--
LambertW-0.5/LambertW/R/create_LambertW_output.R | 235 +++++---
LambertW-0.5/LambertW/R/dLambertW.R | 129 ++--
LambertW-0.5/LambertW/R/dU.R | 73 +-
LambertW-0.5/LambertW/R/datasets.R |only
LambertW-0.5/LambertW/R/delta_01.R | 77 ++
LambertW-0.5/LambertW/R/delta_GMM.R | 160 ++++--
LambertW-0.5/LambertW/R/delta_Taylor.R | 72 ++
LambertW-0.5/LambertW/R/deprecated_functions.R |only
LambertW-0.5/LambertW/R/deriv_W.R |only
LambertW-0.5/LambertW/R/deriv_W_delta.R |only
LambertW-0.5/LambertW/R/deriv_W_gamma.R |only
LambertW-0.5/LambertW/R/estimate_beta.R |only
LambertW-0.5/LambertW/R/flatten_theta.R |only
LambertW-0.5/LambertW/R/gamma_01.R | 67 ++
LambertW-0.5/LambertW/R/gamma_GMM.R | 103 +++
LambertW-0.5/LambertW/R/gamma_Taylor.R | 69 ++
LambertW-0.5/LambertW/R/get_beta_names.R |only
LambertW-0.5/LambertW/R/get_distname_family.R |only
LambertW-0.5/LambertW/R/get_distnames.R |only
LambertW-0.5/LambertW/R/get_gamma_bounds.R |only
LambertW-0.5/LambertW/R/get_initial_tau.R |only
LambertW-0.5/LambertW/R/get_initial_theta.R |only
LambertW-0.5/LambertW/R/get_input.R |only
LambertW-0.5/LambertW/R/get_output.R |only
LambertW-0.5/LambertW/R/get_support.R |only
LambertW-0.5/LambertW/R/get_theta_bounds.R |only
LambertW-0.5/LambertW/R/ks.test.t.R | 78 ++
LambertW-0.5/LambertW/R/log_W.R |only
LambertW-0.5/LambertW/R/loglik_LambertW.R | 86 ++-
LambertW-0.5/LambertW/R/loglik_input.R | 91 ++-
LambertW-0.5/LambertW/R/loglik_penalty.R | 103 ++-
LambertW-0.5/LambertW/R/lp_norm.R |only
LambertW-0.5/LambertW/R/mLambertW.R | 142 +++--
LambertW-0.5/LambertW/R/mc.R | 91 ++-
LambertW-0.5/LambertW/R/normfit.R | 233 +++++---
LambertW-0.5/LambertW/R/pLambertW.R | 160 +++---
LambertW-0.5/LambertW/R/pU.R | 70 +-
LambertW-0.5/LambertW/R/p_m1.R |only
LambertW-0.5/LambertW/R/plot.LambertW_fit.R | 224 ++++----
LambertW-0.5/LambertW/R/plot.LambertW_input.R | 95 ++-
LambertW-0.5/LambertW/R/plot.LambertW_output.R | 191 +++----
LambertW-0.5/LambertW/R/print.LambertW_fit.R | 60 +-
LambertW-0.5/LambertW/R/print.LambertW_input.R | 29 -
LambertW-0.5/LambertW/R/print.LambertW_output.R | 79 +-
LambertW-0.5/LambertW/R/print.summary.LambertW_fit.R | 55 +-
LambertW-0.5/LambertW/R/qLambertW.R | 166 +++---
LambertW-0.5/LambertW/R/qU.R | 73 +-
LambertW-0.5/LambertW/R/qqLambertW.R | 58 +-
LambertW-0.5/LambertW/R/rLambertW.R | 81 +--
LambertW-0.5/LambertW/R/rU.R | 68 +-
LambertW-0.5/LambertW/R/summary.LambertW_fit.R | 111 +++-
LambertW-0.5/LambertW/R/tau2theta.R |only
LambertW-0.5/LambertW/R/tau2type.R |only
LambertW-0.5/LambertW/R/test_symmetry.R |only
LambertW-0.5/LambertW/R/theta2tau.R | 37 +
LambertW-0.5/LambertW/R/theta2unbounded.R |only
LambertW-0.5/LambertW/R/unflatten_theta.R |only
LambertW-0.5/LambertW/inst |only
LambertW-0.5/LambertW/man/G_delta_alpha.Rd | 71 +-
LambertW-0.5/LambertW/man/Gaussianize.Rd | 158 ++++-
LambertW-0.5/LambertW/man/H.Rd | 63 +-
LambertW-0.5/LambertW/man/H_gamma.Rd | 62 +-
LambertW-0.5/LambertW/man/IGMM.Rd | 156 +++--
LambertW-0.5/LambertW/man/LambertW-package.Rd | 164 ++----
LambertW-0.5/LambertW/man/LambertW-toolkit.Rd |only
LambertW-0.5/LambertW/man/LambertW-utils.Rd |only
LambertW-0.5/LambertW/man/LambertW_fit-methods.Rd | 144 ++---
LambertW-0.5/LambertW/man/LambertW_input_output-methods.Rd |only
LambertW-0.5/LambertW/man/MLE_LambertW.Rd | 127 ++--
LambertW-0.5/LambertW/man/U-utils.Rd |only
LambertW-0.5/LambertW/man/W.Rd | 192 +++----
LambertW-0.5/LambertW/man/W_delta.Rd | 102 ++-
LambertW-0.5/LambertW/man/W_gamma.Rd | 68 +-
LambertW-0.5/LambertW/man/beta-utils.Rd |only
LambertW-0.5/LambertW/man/common-arguments.Rd |only
LambertW-0.5/LambertW/man/datasets.Rd |only
LambertW-0.5/LambertW/man/delta_01.Rd | 53 +
LambertW-0.5/LambertW/man/delta_GMM.Rd | 80 +--
LambertW-0.5/LambertW/man/delta_Taylor.Rd | 80 +--
LambertW-0.5/LambertW/man/deprecated-functions.Rd |only
LambertW-0.5/LambertW/man/distname-utils.Rd |only
LambertW-0.5/LambertW/man/gamma_01.Rd | 48 +
LambertW-0.5/LambertW/man/gamma_GMM.Rd | 81 +--
LambertW-0.5/LambertW/man/gamma_Taylor.Rd | 76 +-
LambertW-0.5/LambertW/man/get_gamma_bounds.Rd |only
LambertW-0.5/LambertW/man/get_input.Rd |only
LambertW-0.5/LambertW/man/get_output.Rd |only
LambertW-0.5/LambertW/man/get_support.Rd |only
LambertW-0.5/LambertW/man/ks.test.t.Rd | 80 +--
LambertW-0.5/LambertW/man/loglik-LambertW-utils.Rd |only
LambertW-0.5/LambertW/man/lp_norm.Rd |only
LambertW-0.5/LambertW/man/mc.Rd | 132 ++--
LambertW-0.5/LambertW/man/normfit.Rd | 111 ++--
LambertW-0.5/LambertW/man/p_m1.Rd |only
LambertW-0.5/LambertW/man/tau-utils.Rd |only
LambertW-0.5/LambertW/man/test_symmetry.Rd |only
LambertW-0.5/LambertW/man/theta-utils.Rd | 228 +++++---
177 files changed, 5081 insertions(+), 2479 deletions(-)
Title: Harrell Miscellaneous
Diff between Hmisc versions 3.14-5 dated 2014-09-12 and 3.14-6 dated 2014-11-21
Description: The Hmisc package contains many functions useful for data
analysis, high-level graphics, utility operations, functions for
computing sample size and power, importing datasets,
imputing missing values, advanced table making, variable clustering,
character string manipulation, conversion of R objects to LaTeX code,
and recoding variables.
Author: Frank E Harrell Jr
Maintainer: Frank E Harrell Jr
DESCRIPTION | 8 +-
MD5 | 40 +++++++-------
NAMESPACE | 4 +
NEWS | 14 +++++
R/curveRep.s | 39 ++++++++++++--
R/describe.s | 130 +++++++++++++++++++++++++++--------------------
R/latex.s | 12 ++--
R/mdb.get.s | 2
R/plsmo.s | 6 +-
R/summary.formula.s | 11 ++-
R/summaryM.s | 2
R/wtd.stats.s | 9 +--
man/Overview.Rd | 2
man/contents.Rd | 17 +++++-
man/curveRep.Rd | 4 +
man/latex.Rd | 2
man/mdb.get.Rd | 3 -
man/summary.formula.Rd | 5 +
man/summaryM.Rd | 5 +
man/wtd.stats.Rd | 2
tests/latex.summaryM.Rnw | 42 ++++++++++++++-
21 files changed, 246 insertions(+), 113 deletions(-)
Title: Graphical Reporting for Clinical Trials
Diff between greport versions 0.5-1 dated 2014-04-16 and 0.5-2 dated 2014-11-21
Description: The greport package contains many functions useful for
monitoring and reporting the results of clinical trials and other
experiments in which treatments are compared. LaTeX is
used to typeset the resulting reports, recommended to be in the
context of knitr. The Hmisc and lattice packages are used by greport
for high-level graphics.
Author: Frank E Harrell Jr
Maintainer: Frank E Harrell Jr
DESCRIPTION | 8 +-
MD5 | 60 ++++++++---------
NAMESPACE | 2
NEWS | 8 ++
R/accrualReport.r | 43 +++++++++---
R/dReport.r | 10 ++
R/eReport.r | 5 +
R/exReport.r | 26 +++++--
R/greport-package.r | 2
R/nriskReport.r | 3
R/survReport.r | 5 +
README.md | 3
man/Merge.Rd | 34 +---------
man/accrualReport.Rd | 68 +++++---------------
man/dNeedle.Rd | 15 +---
man/dReport.Rd | 163 +++++++++++++-----------------------------------
man/eReport.Rd | 62 +++++-------------
man/exReport.Rd | 154 +++++++++++++--------------------------------
man/getgreportOption.Rd | 10 --
man/greport.Rd | 4 +
man/latticeInit.Rd | 1
man/mfrowSuggest.Rd | 15 ++--
man/nriskReport.Rd | 87 ++++++++-----------------
man/putFig.Rd | 33 +++------
man/sampleFrac.Rd | 19 +----
man/setgreportOption.Rd | 52 +++++----------
man/startPlot.Rd | 16 ++--
man/survReport.Rd | 68 +++++---------------
man/upFirst.Rd | 10 +-
tests/report.Rnw | 11 ++-
tests/test.Rnw | 4 -
31 files changed, 382 insertions(+), 619 deletions(-)
Title: Cognitive Diagnosis Modeling
Diff between CDM versions 3.4-21 dated 2014-08-31 and 4.0 dated 2014-11-21
Description: Functions for cognitive diagnosis modeling
and multidimensional item response modeling for dichotomous
and polytomous data. This package enables the estimation of the
DINA and DINO model, the multiple group (polytomous) GDINA model,
the multiple choice DINA model, the general diagnostic model (GDM),
the multidimensional linear compensatory item response model and
the structured latent class model (SLCA).
Author: Alexander Robitzsch [aut, cre], Thomas Kiefer [aut],
Ann Cathrice George [aut], Ali Uenlue [aut]
Maintainer: Alexander Robitzsch
CDM-3.4-21/CDM/man/print.din.Rd |only
CDM-4.0/CDM/DESCRIPTION | 10 -
CDM-4.0/CDM/MD5 | 95 +++++++++++-------
CDM-4.0/CDM/NAMESPACE | 82 ++++++++++++++-
CDM-4.0/CDM/R/IRT.factor.scores.R |only
CDM-4.0/CDM/R/IRT.irfprob.R |only
CDM-4.0/CDM/R/IRT.itemfit.R |only
CDM-4.0/CDM/R/IRT.likelihood.R |only
CDM-4.0/CDM/R/IRT.posterior.R |only
CDM-4.0/CDM/R/anova.din.R | 16 ++-
CDM-4.0/CDM/R/cdi.kli.R | 30 +++++
CDM-4.0/CDM/R/check.input.R | 5
CDM-4.0/CDM/R/coef.R | 18 +--
CDM-4.0/CDM/R/din.R | 36 +++++-
CDM-4.0/CDM/R/din.partable.R |only
CDM-4.0/CDM/R/entropy.lca.R |only
CDM-4.0/CDM/R/gdina.R | 4
CDM-4.0/CDM/R/gdm.R | 41 ++++---
CDM-4.0/CDM/R/gdm_postproc.R | 2
CDM-4.0/CDM/R/logLik_CDM.R | 32 ++++--
CDM-4.0/CDM/R/mcdina.R | 35 ++++++
CDM-4.0/CDM/R/personfit.appropriateness.R |only
CDM-4.0/CDM/R/plot.gdm.R |only
CDM-4.0/CDM/R/plot.slca.R |only
CDM-4.0/CDM/R/print.din.R | 60 +++--------
CDM-4.0/CDM/R/print.gdina.R |only
CDM-4.0/CDM/R/print.gdm.R |only
CDM-4.0/CDM/R/print.mcdina.R |only
CDM-4.0/CDM/R/print.slca.R |only
CDM-4.0/CDM/R/skillspace.hierarchy.R | 9 +
CDM-4.0/CDM/R/slca.R | 58 ++++++-----
CDM-4.0/CDM/R/summary.din.R | 2
CDM-4.0/CDM/R/summary.slca.R | 9 +
CDM-4.0/CDM/R/vcov.din.R |only
CDM-4.0/CDM/inst/NEWS | 37 +++++++
CDM-4.0/CDM/man/CDM-package.Rd | 139 +++++++++++++++------------
CDM-4.0/CDM/man/IRT.factor.scores.Rd |only
CDM-4.0/CDM/man/IRT.irfprob.Rd |only
CDM-4.0/CDM/man/IRT.itemfit.Rd |only
CDM-4.0/CDM/man/IRT.likelihood.Rd |only
CDM-4.0/CDM/man/anova.din.Rd | 26 ++---
CDM-4.0/CDM/man/cdi.kli.Rd | 13 ++
CDM-4.0/CDM/man/coef.Rd | 18 ++-
CDM-4.0/CDM/man/data.dcm.Rd | 27 +++++
CDM-4.0/CDM/man/data.ecpe.Rd | 1
CDM-4.0/CDM/man/din.Rd | 32 ++++--
CDM-4.0/CDM/man/din.validate.qmatrix.Rd | 2
CDM-4.0/CDM/man/entropy.lca.Rd |only
CDM-4.0/CDM/man/equivalent.dina.Rd | 2
CDM-4.0/CDM/man/gdina.Rd | 8 +
CDM-4.0/CDM/man/gdm.Rd | 51 +++++++++
CDM-4.0/CDM/man/itemfit.rmsea.Rd | 2
CDM-4.0/CDM/man/itemfit.sx2.Rd | 13 ++
CDM-4.0/CDM/man/logLik.Rd | 28 +++++
CDM-4.0/CDM/man/mcdina.Rd | 11 +-
CDM-4.0/CDM/man/modelfit.cor.Rd | 40 +++++++
CDM-4.0/CDM/man/personfit.appropriateness.Rd |only
CDM-4.0/CDM/man/skillspace.hierarchy.Rd | 9 +
CDM-4.0/CDM/man/slca.Rd | 24 +++-
CDM-4.0/CDM/man/vcov.Rd |only
60 files changed, 738 insertions(+), 289 deletions(-)
Title: Variable Selection Deviation (VSD) Measures and Instability
Tests for High-dimensional Generalized Linear Models
Diff between glmvsd versions 1.0 dated 2014-10-22 and 1.1 dated 2014-11-21
Description: Variable selection deviation measures and instability tests for high-dimensional model selection methods such as LASSO, SCAD and MCP, etc., to decide whether the sparse patterns identified by those methods are reliable.
Author: Ying Nan
Maintainer: Yi Yang
ChangeLog |only
DESCRIPTION | 6 +++---
MD5 | 13 +++++++------
R/glmvsd.R | 38 +++++++-------------------------------
R/logitARM.R | 6 +++---
R/logitBIC.R | 2 +-
R/lsARM.R | 8 ++++----
man/glmvsd.Rd | 22 +++++++++++-----------
8 files changed, 36 insertions(+), 59 deletions(-)
Title: A Data Analysis Tool for In Vitro-In Vivo Correlation (IVIVC)
Diff between ivivc versions 0.2.1 dated 2014-09-23 and 0.2.2 dated 2014-11-21
Description: a menu-driven package for IVIVC model building, data analysis and
model validation (only internal validation) based on Wagner-Nelson
Method (only for the one-compartment PK model) for Level A correlation
Author: Hsin-ya Lee, Yung-jin Lee
Maintainer: Yung-jin Lee
DESCRIPTION | 12 +++---
MD5 | 27 ++++++++------
NAMESPACE | 3 +
NEWS | 18 +++++++--
R/description_version.r | 3 +
R/fbolus1.R | 40 +++++++++------------
R/ffirst.lag.R | 72 +++++++++++++++++----------------------
R/ffirst.nolag.R | 2 -
R/ivivc_demo.r | 31 +++++++++-------
R/logo_plot_desc.r | 2 -
R/noniv.route.R | 7 ++-
R/zzz.R | 5 +-
inst/CITATION |only
inst/extdata/ivivc_ref_data.csv |only
inst/extdata/ivivc_test_data.csv |only
inst/extdata/readme.txt | 18 ++++-----
16 files changed, 125 insertions(+), 115 deletions(-)