Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-11-28 2011.11-2
2011-11-03 2011.11-1
2009-10-13 2009.10-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-11-28 2011.11-2
2011-11-03 2011.11-1
2009-10-13 2009.10-1
Title: Obtain, Organize, and Visualize NCEP Weather Data
Diff between RNCEP versions 1.0.6 dated 2013-03-21 and 1.0.7 dated 2014-11-24
Description: This package contains functions to retrieve, organize, and visualize weather data from the NCEP/NCAR Reanalysis (http://www.esrl.noaa.gov/psd/data/gridded/data.ncep.reanalysis.html) and NCEP/DOE Reanalysis II (http://www.esrl.noaa.gov/psd/data/gridded/data.ncep.reanalysis2.html) datasets. Data are queried via the Internet and may be obtained for a specified spatial and temporal extent or interpolated to a point in space and time. We also provide functions to visualize these weather data on a map. There are also functions to simulate flight trajectories according to specified behavior using either NCEP wind data or data specified by the user.
Author: Michael U. Kemp
Maintainer: Michael U. Kemp
DESCRIPTION | 28 ++++++++-------------------
MD5 | 34 ++++++++++++++++-----------------
NAMESPACE | 26 +++++++++++++------------
R/NCEP.bind.R | 3 --
R/NCEP.gather.R | 4 ++-
R/NCEP.gather.gaussian.R | 11 ++++++----
R/NCEP.gather.pressure.R | 13 +++++++-----
R/NCEP.gather.surface.R | 11 ++++++----
R/NCEP.interp.gaussian.R | 41 +++++++++++++++++++++++++++++-----------
R/NCEP.interp.pressure.R | 41 ++++++++++++++++++++++++++++++----------
R/NCEP.interp.surface.R | 41 +++++++++++++++++++++++++++++-----------
R/NCEP.track2kml.R | 4 +--
R/NCEP.vis.area.R | 6 ++++-
R/NCEP.vis.points.R | 4 ++-
R/robust.NCEP.interp.gaussian.R | 37 ++++++++++++++++++++++++++----------
R/robust.NCEP.interp.pressure.R | 35 +++++++++++++++++++++++++---------
R/robust.NCEP.interp.surface.R | 35 +++++++++++++++++++++++++---------
man/RNCEP-package.Rd | 4 +--
18 files changed, 247 insertions(+), 131 deletions(-)
Title: Data access API for DataMarket.com
Diff between rdatamarket versions 0.6.4 dated 2012-02-06 and 0.6.5 dated 2014-11-24
Description: Fetches data from DataMarket.com, either as
timeseries in zoo form (dmseries) or as long-form data
frames (dmlist). Metadata including dimension structure
is fetched with dminfo, or just the dimensions with
dmdims.
Author: Gunnlaugur Thor Briem
Maintainer: Gunnlaugur Thor Briem
DESCRIPTION | 19 +++++-----
LICENSE |only
MD5 | 23 ++++++-------
NAMESPACE | 20 ++++++-----
NEWS | 9 +++++
inst/tests/test-all.r | 22 ++++++------
man/dmCurlOptions.Rd | 27 ++++++---------
man/dmdims.Rd | 42 ++++++++++-------------
man/dminfo.Rd | 27 ++++++---------
man/dminit.Rd | 15 +++-----
man/dmlist.Rd | 40 ++++++++++------------
man/dmseries.Rd | 34 ++++++++-----------
man/rdatamarket-package.Rd | 79 ++++++++++++++++++++++-----------------------
13 files changed, 177 insertions(+), 180 deletions(-)
Title: Tools for Manipulating and Summarizing CMIP5 Data
Diff between RCMIP5 versions 1.0 dated 2014-10-16 and 1.1 dated 2014-11-24
Description: Working with CMIP5 data can be tricky, forcing scientists to write
custom scripts and programs. The `RCMIP5` package aims to ease this
process, providing a standard, robust, and high-performance set of scripts
to (i) explore what data have been downloaded, (ii) identify missing data,
(iii) average (or apply other mathematical operations) across experimental
ensembles, (iv) produce both temporal and spatial statistical summaries,
and (v) produce easy-to-work-with graphical and data summaries.
Author: Ben Bond-Lamberty [aut],
Kathe Todd-Brown [aut, cre]
Maintainer: Kathe Todd-Brown
DESCRIPTION | 18 ++--
MD5 | 105 +++++++++++++--------------
NAMESPACE | 4 -
NEWS | 14 +++
R/RCMIP5.R | 124 ++++++++++++++++++++------------
R/addProvenance.R | 9 ++
R/calcGridArea.R | 2
R/checkTimePeriod.R | 61 ++++++++-------
R/filterDimensions.R | 35 ++++-----
R/getFileInfo.R | 9 --
R/loadCMIP5.R | 93 ++++++++++++++----------
R/loadEnsemble.R | 121 +++++++++++++++++--------------
R/makeAnnualStat.R | 113 +++++++++++------------------
R/makeGlobalStat.R | 114 +++++++++--------------------
R/makeMonthlyStat.R | 103 ++++++++++----------------
R/makeZStat.R | 111 ++++++----------------------
R/mergeExperiments.R | 2
R/saveNetCDF.R | 92 +++++++++--------------
R/worldPlot.R | 74 +++++++++----------
README.md | 8 +-
build/vignette.rds |binary
demo/RCMIP5.R | 8 --
inst/doc/atmospheric_co2.Rmd | 13 +--
inst/doc/atmospheric_co2.html | 15 +--
man/addProvenance.Rd | 2
man/as.array.cmip5data.Rd |only
man/as.data.frame.cmip5data.Rd | 7 -
man/checkTimePeriod.Rd | 2
man/cmip5data.Rd | 4 -
man/loadCMIP5.Rd | 4 -
man/loadEnsemble.Rd | 7 -
man/makeAnnualStat.Rd | 24 ------
man/makeGlobalStat.Rd | 35 ++-------
man/makeMonthlyStat.Rd | 24 ------
man/makeZStat.Rd | 25 ------
man/restoreMissingDims.Rd | 2
man/saveNetCDF.Rd | 10 +-
man/worldPlot.Rd | 8 +-
tests/testthat/test_RCMIP5.R | 86 +++++++++++++---------
tests/testthat/test_addProvenance.R | 8 --
tests/testthat/test_chainedOperations.R | 66 ++++++++---------
tests/testthat/test_checkTimePeriod.R | 8 +-
tests/testthat/test_cmip5data.R | 54 +++++++------
tests/testthat/test_filterDimensions.R | 19 +---
tests/testthat/test_getFileInfo.R | 26 ++----
tests/testthat/test_loadCMIP5.R | 86 ++++++++++++----------
tests/testthat/test_loadEnsemble.R | 54 +++++++------
tests/testthat/test_makeAnnualStat.R | 121 +++++++++++++++----------------
tests/testthat/test_makeGlobalStat.R | 99 +++++++++++++++++--------
tests/testthat/test_makeMonthlyStat.R | 84 +++++++++++----------
tests/testthat/test_makeZStat.R | 58 ++++++--------
tests/testthat/test_mergeExperiments.R | 6 -
tests/testthat/test_saveNetCDF.R | 19 +++-
vignettes/atmospheric_co2.Rmd | 13 +--
54 files changed, 1050 insertions(+), 1159 deletions(-)
Title: Generalized Ridge Trace Plots for Ridge Regression
Diff between genridge versions 0.6-3 dated 2012-02-08 and 0.6-5 dated 2014-11-24
Description:
The genridge package introduces generalizations of the standard univariate
ridge trace plot used in ridge regression and related methods. These graphical methods
show both bias (actually, shrinkage) and precision, by plotting the covariance ellipsoids of the estimated
coefficients, rather than just the estimates themselves. 2D and 3D plotting methods are provided,
both in the space of the predictor variables and in the transformed space of the PCA/SVD of the
predictors.
Author: Michael Friendly [aut, cre]
Maintainer: Michael Friendly
genridge-0.6-3/genridge/.project |only
genridge-0.6-5/genridge/DESCRIPTION | 34 +++++++++++----------
genridge-0.6-5/genridge/MD5 | 30 ++++++++++--------
genridge-0.6-5/genridge/NAMESPACE | 1
genridge-0.6-5/genridge/NEWS | 7 ++++
genridge-0.6-5/genridge/R/contourf.R |only
genridge-0.6-5/genridge/R/plot3d.ridge.R | 38 ++++++++++++------------
genridge-0.6-5/genridge/R/vif.ridge.R | 2 -
genridge-0.6-5/genridge/data/Acetylene.RData |binary
genridge-0.6-5/genridge/data/Detroit.RData |binary
genridge-0.6-5/genridge/data/Manpower.RData |binary
genridge-0.6-5/genridge/man/contourf.Rd |only
genridge-0.6-5/genridge/man/genridge-package.Rd | 4 +-
genridge-0.6-5/genridge/man/pairs.ridge.Rd | 3 +
genridge-0.6-5/genridge/man/plot.ridge.Rd | 9 +++--
genridge-0.6-5/genridge/man/plot3d.ridge.Rd | 6 ++-
genridge-0.6-5/genridge/man/traceplot.Rd | 3 +
genridge-0.6-5/genridge/man/vif.ridge.Rd | 3 +
18 files changed, 80 insertions(+), 60 deletions(-)
Title: Controlling the Generalized Familywise Error Rate
Diff between someKfwer versions 1.1 dated 2010-07-01 and 1.2 dated 2014-11-24
Description: This package collects some procedures controlling the
Generalized Familywise Error Rate.
Author: L. Finos and A. Farcomeni
Maintainer: L. Finos
DESCRIPTION | 9 +++++----
MD5 |only
man/kfwe-package.Rd | 4 ++--
man/kfwe.Rd | 16 ++++++----------
4 files changed, 13 insertions(+), 16 deletions(-)
Title: General Non-linear Optimization
Diff between Rsolnp versions 1.14 dated 2012-12-14 and 1.15 dated 2014-11-24
Description: General Non-linear Optimization Using Augmented Lagrange Multiplier Method
Author: Alexios Ghalanos and Stefan Theussl
Maintainer: Alexios Ghalanos
Rsolnp-1.14/Rsolnp/COPYRIGHTS |only
Rsolnp-1.14/Rsolnp/R/zzz.R |only
Rsolnp-1.15/Rsolnp/ChangeLog | 4 ++++
Rsolnp-1.15/Rsolnp/DESCRIPTION | 15 ++++++---------
Rsolnp-1.15/Rsolnp/MD5 | 14 +++++++-------
Rsolnp-1.15/Rsolnp/R/solnp.R | 2 +-
Rsolnp-1.15/Rsolnp/R/subnp.R | 11 +++++------
Rsolnp-1.15/Rsolnp/inst/COPYRIGHTS |only
Rsolnp-1.15/Rsolnp/inst/doc/manual.pdf |only
Rsolnp-1.15/Rsolnp/man/Rsolnp-package.Rd | 4 ++--
10 files changed, 25 insertions(+), 25 deletions(-)
Title: Download and Process Data from the Paleobiology Database
Diff between paleobioDB versions 0.2 dated 2014-09-09 and 0.3 dated 2014-11-24
Description: 19 functions to wrap each endpoint of
the PaleobioDB API, plus 8 functions to visualize and process the fossil
data. The API documentation for the Paleobiology Database can be found in
Author: Sara Varela [aut, cre],
Javier González Hernández [aut],
Luciano Fabris Sgarbi [aut]
Maintainer: Sara Varela
DESCRIPTION | 15 +++++++--------
MD5 | 8 ++++----
NAMESPACE | 2 ++
R/pbdb_temporal_functions.R | 4 ++--
README.md | 4 ++--
5 files changed, 17 insertions(+), 16 deletions(-)
Title: Meta-Analysis Package for R
Diff between metafor versions 1.9-4 dated 2014-07-30 and 1.9-5 dated 2014-11-24
Description: The metafor package provides a comprehensive collection of functions for conducting meta-analyses in R. The package includes functions to calculate various effect sizes or outcome measures, fit fixed-, random-, and mixed-effects models to such data, carry out moderator and meta-regression analyses, and create various types of meta-analytical plots (e.g., forest, funnel, radial, L'Abbe, Baujat plots). For meta-analyses of binomial and person-time data, the package also provides functions that implement specialized methods, including the Mantel-Haenszel method, Peto's method, and a variety of suitable generalized linear (mixed-effects) models (i.e., mixed-effects (conditional) logistic and Poisson regression models). Finally, the package provides functionality for fitting meta-analytic multivariate/multilevel models that account for non-independent sampling errors and/or true effects (e.g., due to the inclusion of multiple treatment studies, multiple endpoints, or other forms of clustering). Network meta-analyses and meta-analyses accounting for known correlation structures (e.g., due to phylogenetic relatedness) can also be conducted.
Author: Wolfgang Viechtbauer [aut, cre]
Maintainer: Wolfgang Viechtbauer
metafor-1.9-4/metafor/man/anova.rma.uni.Rd |only
metafor-1.9-4/metafor/man/print.anova.rma.uni.Rd |only
metafor-1.9-5/metafor/DESCRIPTION | 18
metafor-1.9-5/metafor/MD5 | 68
metafor-1.9-5/metafor/NAMESPACE | 9
metafor-1.9-5/metafor/NEWS | 73
metafor-1.9-5/metafor/R/metafor.R | 1460 +++++-----
metafor-1.9-5/metafor/data/dat.collins1985a.rda |binary
metafor-1.9-5/metafor/inst/doc/metafor_diagram.pdf |binary
metafor-1.9-5/metafor/man/anova.rma.Rd |only
metafor-1.9-5/metafor/man/baujat.Rd | 1
metafor-1.9-5/metafor/man/cumul.Rd | 4
metafor-1.9-5/metafor/man/dat.begg1989.Rd | 2
metafor-1.9-5/metafor/man/dat.collins1985a.Rd | 53
metafor-1.9-5/metafor/man/dat.hasselblad1998.Rd | 6
metafor-1.9-5/metafor/man/dat.konstantopoulos2011.Rd | 20
metafor-1.9-5/metafor/man/dat.raudenbush1985.Rd | 2
metafor-1.9-5/metafor/man/fitstats.Rd | 2
metafor-1.9-5/metafor/man/forest.default.Rd | 4
metafor-1.9-5/metafor/man/forest.rma.Rd | 17
metafor-1.9-5/metafor/man/funnel.Rd | 11
metafor-1.9-5/metafor/man/llplot.Rd | 2
metafor-1.9-5/metafor/man/metafor-package.Rd | 2
metafor-1.9-5/metafor/man/model.matrix.rma.Rd |only
metafor-1.9-5/metafor/man/permutest.Rd | 15
metafor-1.9-5/metafor/man/print.anova.rma.Rd |only
metafor-1.9-5/metafor/man/print.rma.uni.Rd | 2
metafor-1.9-5/metafor/man/radial.Rd | 7
metafor-1.9-5/metafor/man/rma.glmm.Rd | 12
metafor-1.9-5/metafor/man/rma.mh.Rd | 21
metafor-1.9-5/metafor/man/rma.mv.Rd | 7
metafor-1.9-5/metafor/man/rma.peto.Rd | 19
metafor-1.9-5/metafor/man/rma.uni.Rd | 8
metafor-1.9-5/metafor/man/update.rma.Rd |only
metafor-1.9-5/metafor/man/vcov.rma.Rd | 13
metafor-1.9-5/metafor/tests/test-all.R | 1
metafor-1.9-5/metafor/tests/testthat/test_confint.r |only
metafor-1.9-5/metafor/tests/testthat/test_example_stijnen2010.r |only
metafor-1.9-5/metafor/tests/testthat/test_handling_of_edge_cases_due_to_zeros.r |only
metafor-1.9-5/metafor/tests/testthat/test_rma_weights.r |only
40 files changed, 1051 insertions(+), 808 deletions(-)
Title: Relationship between Species and Groups of Sites
Diff between indicspecies versions 1.7.3 dated 2014-09-25 and 1.7.4 dated 2014-11-24
Description: Functions to assess the strength and statistical significance of the relationship between species occurrence/abundance and groups of sites. Also includes functions to measure species niche breadth using resource categories.
Author: Miquel De Caceres, Florian Jansen
Maintainer: Miquel De Caceres
indicspecies-1.7.3/indicspecies/vignettes/Rplots.pdf |only
indicspecies-1.7.4/indicspecies/DESCRIPTION | 13 ++++------
indicspecies-1.7.4/indicspecies/MD5 | 8 +++---
indicspecies-1.7.4/indicspecies/build/vignette.rds |binary
indicspecies-1.7.4/indicspecies/man/indicspecies-package.Rd | 4 +--
indicspecies-1.7.4/indicspecies/vignettes/PigeonExample-005.pdf |only
6 files changed, 12 insertions(+), 13 deletions(-)
Title: Dynamic slicing
Diff between dslice versions 1.1.0 dated 2014-11-12 and 1.1.3 dated 2014-11-24
Description: Dynamic slicing is a method designed for dependency detection between a categorical variable and a continuous variable. It could be applied for non-parametric hypothesis testing and gene set enrichment analysis.
Author: Chao Ye and Bo Jiang
Maintainer: Chao Ye
DESCRIPTION | 8 ++++----
MD5 | 37 +++++++++++++++++++++++++------------
R/RcppExports.R | 12 ++++++------
R/ds_gsa.R | 7 -------
R/ds_test.R | 32 +++++++++++++++++++-------------
R/load_gmt.R | 1 -
data |only
inst |only
man/ds_1.Rd | 5 ++++-
man/ds_eqp_1.Rd | 7 +++++--
man/ds_eqp_k.Rd | 10 +++++-----
man/ds_gsa.Rd | 2 +-
man/ds_k.Rd | 13 ++++++++-----
man/ds_test.Rd | 1 +
man/gsa_exp.Rd |only
man/gsa_label.Rd |only
man/gsa_set.Rd |only
man/slice_show.Rd | 4 ++--
vignettes |only
19 files changed, 80 insertions(+), 59 deletions(-)
Title: Choplump tests
Diff between choplump versions 1.0-0.3 dated 2014-01-23 and 1.0-0.4 dated 2014-11-24
Description: Choplump Tests are Permutation Tests for Comparing Two Groups with Some Positive but Many Zero Responses
Author: Michael P. Fay
Maintainer: Michael P. Fay
choplump-1.0-0.3/choplump/vignettes/Rplots.pdf |only
choplump-1.0-0.3/choplump/vignettes/Rplots.ps |only
choplump-1.0-0.4/choplump/CHANGELOG | 4 +++-
choplump-1.0-0.4/choplump/DESCRIPTION | 10 +++++-----
choplump-1.0-0.4/choplump/MD5 | 12 +++++-------
choplump-1.0-0.4/choplump/build/vignette.rds |binary
choplump-1.0-0.4/choplump/inst/doc/choplump.pdf |binary
choplump-1.0-0.4/choplump/inst/doc/choplumpValidation.pdf |binary
8 files changed, 13 insertions(+), 13 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-11-17 1.1
2009-08-05 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-02-11 0.6-1.1
2010-07-05 0.6-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-08-01 0.2.05
2011-10-19 0.2.04
2011-08-23 0.2.03
2011-07-23 0.2.02
2011-05-23 0.2.01
2011-04-24 0.2
2011-02-28 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-08-06 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-05-27 1.0-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-04-13 1.0-6
2010-06-10 1.0-5
2010-05-30 1.0-4
2010-05-04 1.0-3
2009-02-17 1.0-2
2008-05-06 1.0-0
Title: Tools for Nonlinear Mixed-Effect Model Building and Diagnostics
Diff between xpose4 versions 4.5.0 dated 2014-05-20 and 4.5.3 dated 2014-11-24
Description: Xpose is collection of functions to be used as a model
building aid for non-linear mixed effects (population) analysis
using NONMEM. It facilitates data set checkout, exploration and
visualization, model diagnostics, candidate covariate identification
and model comparison.
Author: Andrew C. Hooker [aut, cre, cph],
Mats O. Karlsson [aut, cph],
Justin J. Wilkins [aut],
E. Niclas Jonsson [aut, trl, cph],
Ron Keizer [ctb] (functionality for bootstrap of GAM and SCM)
Maintainer: Andrew C. Hooker
DESCRIPTION | 33 +-
MD5 | 44 +--
NEWS | 32 ++
R/bootscm.R | 489 +++++++++++++++++++++----------------------
R/compute.cwres.R | 12 -
R/create.parameter.list.R | 2
R/dOFV.vs.id.R | 220 +++++++++----------
R/export.graph.par.R | 1
R/ind.plots.R | 64 ++---
R/kaplan.plot.R | 8
R/parm.summary.R | 27 +-
R/read.lst7.R | 2
R/xpose.VPC.R | 8
R/xpose.VPC.categorical.R | 4
R/xpose.gam.R | 127 ++++++-----
R/xpose.plot.default.R | 130 +++++------
R/xpose.stack.R | 65 +++--
R/xpose.write.R | 2
man/compute.cwres.Rd | 43 +--
man/ind.plots.Rd | 10
man/tabulate.parameters.Rd | 4
man/xpose.VPC.categorical.Rd | 4
man/xpose4psn-package.Rd | 1
23 files changed, 714 insertions(+), 618 deletions(-)
Title: TH's Data Archive
Diff between TH.data versions 1.0-4 dated 2014-11-10 and 1.0-5 dated 2014-11-24
Description: Contains data sets used in other packages Torsten Hothorn
maintains.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn
DESCRIPTION | 9 +++++----
MD5 | 28 +++++++++++++++++++++++++++-
inst/PSGLMM_MEE |only
inst/rda/birdsData.rda |only
4 files changed, 32 insertions(+), 5 deletions(-)
Title: Sample Generation by Replacement
Diff between sgr versions 1.2 dated 2014-09-02 and 1.3 dated 2014-11-24
Description: The package for Sample Generation by Replacement simulations (SGR; Lombardi & Pastore, 2014; Pastore & Lombardi, 2014). The package can be used to perform fake data analysis according to the sample generation by replacement approach. It includes functions for making simple inferences about discrete/ordinal fake data. The package allows to study the implications of fake data for empirical results.
Author: Massimiliano Pastore & Luigi Lombardi
Maintainer: Massimiliano Pastore
DESCRIPTION | 10 ++++----
MD5 | 22 +++++++++---------
NEWS | 7 +++++
R/rdatagen.R | 54 ++++++++++++++++++++++++++++++++++++++++------
man/amse.Rd | 2 -
man/arb.Rd | 2 -
man/dgBeta.Rd | 2 -
man/dgBetaD.Rd | 4 ++-
man/model.fake.par.Rd | 2 +
man/pfake.Rd | 5 ++--
man/rdatagen.Rd | 13 +++++++++--
man/replacement.matrix.Rd | 10 +++-----
12 files changed, 96 insertions(+), 37 deletions(-)
Title: Interval Testing Procedure for functional data
Diff between fdatest versions 1.0 dated 2013-07-23 and 2.0 dated 2014-11-24
Description: The package implements the Interval Testing Procedure for functional data in different frameworks (i.e., one or two-population frameworks, functional linear models) by means of different basis expansions (i.e., B-spline, Fourier, and phase-amplitude Fourier). The current version of the package requires functional data evaluated on a uniform grid; it automatically projects each function on a chosen functional basis; it performs the entire family of multivariate tests; and, finally, it provides the matrix of the p-values of the previous tests and the vector of the corrected p-values. The functional basis, the coupled or uncoupled scenario, and the kind of test can be chosen by the user. The package provides also a plotting function creating a graphical output of the procedure: the p-value heat-map, the plot of the corrected p-values, and the plot of the functional data.
Author: Alessia Pini, Simone Vantini
Maintainer: Alessia Pini
DESCRIPTION | 10 +++++-----
MD5 | 42 +++++++++++++++++++++++++++++-------------
NAMESPACE | 1 +
R/ITP1bspline.R | 16 +++++++++-------
R/ITP1fourier.R | 7 ++++---
R/ITP2bspline.R | 13 +++++++------
R/ITP2fourier.R | 7 ++++---
R/ITP2pafourier.R | 13 +++++++------
R/ITPaovbspline.R |only
R/ITPlmbspline.R |only
R/plot.ITP1.R |only
R/plot.ITP2.R |only
R/plot.ITPaov.R |only
R/plot.ITPlm.R |only
R/summary.ITPaov.R |only
R/summary.ITPlm.R |only
man/ITP1bspline.Rd | 8 ++++++--
man/ITP1fourier.Rd | 14 +++++++++-----
man/ITP2bspline.Rd | 18 ++++++++++++------
man/ITP2fourier.Rd | 14 +++++++++-----
man/ITP2pafourier.Rd | 10 +++++++---
man/ITPaovbspline.Rd |only
man/ITPlmbspline.Rd |only
man/fdatest-package.Rd | 2 +-
man/plot.ITP1.Rd |only
man/plot.ITP2.Rd |only
man/plot.ITPaov.Rd |only
man/plot.ITPlm.Rd |only
man/summary.ITPaov.Rd |only
man/summary.ITPlm.Rd |only
30 files changed, 110 insertions(+), 65 deletions(-)
Title: Bayesian analysis for exponential random graph models
Diff between Bergm versions 3.0 dated 2014-10-12 and 3.0.1 dated 2014-11-24
Description: Set of tools to analyse Bayesian exponential random graph models
Author: Alberto Caimo [aut, cre], Nial Friel [ctb]
Maintainer: Alberto Caimo
DESCRIPTION | 10 +++++-----
MD5 | 8 ++++----
R/bergm.R | 10 ++++++----
R/bergmS.R | 2 +-
man/bergm.Rd | 4 ++--
5 files changed, 18 insertions(+), 16 deletions(-)
Title: Simulations to predict the number of loci expected in RAD and
GBS approaches.
Diff between SimRAD versions 0.94 dated 2014-05-15 and 0.95 dated 2014-11-24
Description: This package provides a number of functions to simulate restriction enzyme digestion, library construction and fragments size selection to predict the number of loci expected from most of the Restriction site Associated DNA (RAD) and Genotyping By Sequencing (GBS) approaches. SimRAD aims is to provide an estimation of the number of loci expected from a particular genome depending on the protocol type and parameters allowing to assess feasibility, multiplexing capacity and the amount of sequencing required.
Author: Olivier Lepais [aut, cre],
Jason Weir [aut]
Maintainer: Olivier Lepais
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/insilico.digest.R | 20 ++++++++++----------
man/SimRAD-package.Rd | 4 ++--
4 files changed, 19 insertions(+), 19 deletions(-)
Title: Handling missing values with/in multivariate data analysis
(principal component methods)
Diff between missMDA versions 1.7.2 dated 2013-12-15 and 1.7.3 dated 2014-11-24
Description: Imputation of incomplete continuous or categorical datasets; Missing values are imputed with a principal component analysis (PCA), a multiple correspondence analysis (MCA) model or a multiple factor analysis (MFA) model; Perform multiple imputation with and in PCA
Author: Francois Husson, Julie Josse
Maintainer: Francois Husson
missMDA-1.7.2/missMDA/missMDA-Ex.R |only
missMDA-1.7.3/missMDA/DESCRIPTION | 10 +-
missMDA-1.7.3/missMDA/MD5 | 20 ++--
missMDA-1.7.3/missMDA/NAMESPACE | 1
missMDA-1.7.3/missMDA/R/estim_ncpMCA.R | 32 -------
missMDA-1.7.3/missMDA/R/estim_ncpPCA.R | 2
missMDA-1.7.3/missMDA/R/imputeMCA.R | 110 ++++++++++++---------------
missMDA-1.7.3/missMDA/R/imputeMFA.R | 1
missMDA-1.7.3/missMDA/man/estim_ncpMCA.Rd | 4
missMDA-1.7.3/missMDA/man/imputeMCA.Rd | 8 +
missMDA-1.7.3/missMDA/man/imputePCA.Rd | 3
missMDA-1.7.3/missMDA/man/missMDA-package.Rd |only
12 files changed, 85 insertions(+), 106 deletions(-)
Title: P-values for Classification
Diff between pvclass versions 1.1 dated 2014-06-11 and 1.2 dated 2014-11-24
Description: Computes nonparametric p-values for the potential class
memberships of new observations as well as cross-validated
p-values for the training data. The p-values are based on
permutation tests applied to an estimated Bayesian likelihood
ratio, using a plug-in statistic for the Gaussian model, 'k
nearest neighbors', 'weighted nearest neighbors' or
'penalized logistic regression'.
Additionally, it provides graphical displays and quantitative
analyses of the p-values.
Author: Niki Zumbrunnen
Maintainer: Niki Zumbrunnen
DESCRIPTION | 14 +++++++-------
MD5 | 2 +-
2 files changed, 8 insertions(+), 8 deletions(-)
Title: Model-Based Clustering of Categorical Sequences
Diff between ClickClust versions 1.1.2 dated 2014-09-23 and 1.1.3 dated 2014-11-24
Description: ClickClust allows clustering categorical sequences by means of finite mixtures with Markov model components. ClickClust also allows detecting blocks of equivalent states by forward and backward state selection procedures.
Author: Volodymyr Melnykov [aut, cre]
Maintainer: Volodymyr Melnykov
DESCRIPTION | 8 ++--
MD5 | 31 ++++++++--------
NAMESPACE | 9 ++++
NEWS | 4 ++
R/libClickClust.R | 14 +++++--
R/main.R | 92 ++++++++++++++++++++++++++++++++++++++++++++++++--
demo/demoClickClust.R | 1
demo/sec3.1_ex1.R | 4 +-
demo/sec3.2_ex1.R | 5 +-
demo/sec3.2_ex2.R | 6 +--
demo/sec3.3_ex1.R | 8 ++--
demo/sec3.4_ex1.R | 7 ++-
demo/sec3.4_ex2.R | 7 ++-
demo/sec3.5_ex1.R | 2 -
demo/sec3.6_ex1.R | 2 -
demo/sec3.6_ex2.R | 2 -
man/print.summary.Rd |only
17 files changed, 157 insertions(+), 45 deletions(-)
Title: Functions for Processing Minute-to-Minute Accelerometer Data
Diff between accelerometry versions 2.2.2 dated 2014-08-11 and 2.2.3 dated 2014-11-24
Description: This package contains a collection of functions that perform operations on time-series accelerometer data, such as identify non-wear time, flag minutes that are part of an activity bout, and find the maximum 10-minute average count value. The functions are generally very flexible, allowing for a variety of algorithms to be implemented. Most of the functions are written in C++ for efficiency.
Author: Dane R. Van Domelen
Maintainer: Dane R. Van Domelen
DESCRIPTION | 14 ++++-----
MD5 | 62 ++++++++++++++++++++++---------------------
R/RcppExports.R | 4 +-
demo |only
man/accel_artifacts.Rd | 2 -
man/accel_bouts.Rd | 2 -
man/accel_intensities.Rd | 2 -
man/accel_process_tri.Rd | 4 +-
man/accel_process_uni.Rd | 4 +-
man/accel_sedbreaks.Rd | 2 -
man/accel_weartime.Rd | 2 -
man/accelerometry-package.Rd | 8 ++---
man/blockaves.Rd | 2 -
man/inverse_rle2.Rd | 2 -
man/movingaves.Rd | 2 -
man/personvars.Rd | 2 -
man/rle2.Rd | 2 -
man/rle2_char.Rd | 2 -
man/rle2_num.Rd | 2 -
man/tridata.Rd | 2 -
man/unidata.Rd | 2 -
src/RcppExports.cpp | 32 +++++++++++-----------
src/artifacts.cpp | 10 +++---
src/blockaves.cpp | 2 -
src/bouts.cpp | 2 -
src/intensities.cpp | 4 +-
src/movingaves.cpp | 4 +-
src/movingaves_max.cpp | 6 ++--
src/rle2_num.cpp | 8 ++---
src/sedbreaks.cpp | 2 -
src/sedbreaks_flags.cpp | 2 -
src/weartime.cpp | 2 -
32 files changed, 100 insertions(+), 98 deletions(-)