Title: Sampling Design for Spatially Explicit Capture-Recapture
Diff between secrdesign versions 2.1.3 dated 2014-06-04 and 2.2.1 dated 2014-11-26
Description: Tools for designing spatially explicit capture--recapture studies of animal populations (primarily a simulation manager for package secr)
Author: Murray Efford
Maintainer: Murray Efford
secrdesign-2.1.3/secrdesign/inst/doc/secrdesign-vignette.Rnw |only
secrdesign-2.1.3/secrdesign/man/figures |only
secrdesign-2.1.3/secrdesign/vignettes/secrdesign-fig3.pdf |only
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secrdesign-2.1.3/secrdesign/vignettes/sims1.RData |only
secrdesign-2.2.1/secrdesign/DESCRIPTION | 14
secrdesign-2.2.1/secrdesign/MD5 | 45 -
secrdesign-2.2.1/secrdesign/NEWS | 20
secrdesign-2.2.1/secrdesign/R/make.scenarios.R | 21
secrdesign-2.2.1/secrdesign/R/methods.R | 188 +---
secrdesign-2.2.1/secrdesign/R/run.scenarios.R | 310 +++----
secrdesign-2.2.1/secrdesign/R/select.stats.R |only
secrdesign-2.2.1/secrdesign/R/utility.R |only
secrdesign-2.2.1/secrdesign/R/validate.R | 3
secrdesign-2.2.1/secrdesign/build/vignette.rds |binary
secrdesign-2.2.1/secrdesign/inst/doc/secrdesign-manual.pdf |binary
secrdesign-2.2.1/secrdesign/inst/doc/secrdesign-vignette.R | 437 ++++++++--
secrdesign-2.2.1/secrdesign/inst/doc/secrdesign-vignette.Rmd |only
secrdesign-2.2.1/secrdesign/inst/doc/secrdesign-vignette.pdf |binary
secrdesign-2.2.1/secrdesign/man/make.scenarios.Rd | 13
secrdesign-2.2.1/secrdesign/man/run.scenarios.Rd | 10
secrdesign-2.2.1/secrdesign/man/secrdesign-package.Rd | 48 -
secrdesign-2.2.1/secrdesign/man/summary.simulations.Rd | 4
secrdesign-2.2.1/secrdesign/vignettes/runsims1.RData |only
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secrdesign-2.2.1/secrdesign/vignettes/secrdesign-vignette.Rmd |only
32 files changed, 681 insertions(+), 432 deletions(-)
Title: combined miRNA- and mRNA-testing
Diff between miRtest versions 1.7 dated 2014-06-29 and 1.8 dated 2014-11-26
Description: combined miRNA- and mRNA-testing
Author: Stephan Artmann, Klaus Jung, Tim Beissbarth
Maintainer: Stephan Artmann
DESCRIPTION | 13 +++++--------
MD5 | 14 +++++++-------
R/miRtest.R | 2 +-
build/vignette.rds |binary
inst/doc/miRtest.Rnw | 4 ++--
inst/doc/miRtest.pdf |binary
man/miRtest.Rd | 4 ++--
vignettes/miRtest.Rnw | 4 ++--
8 files changed, 19 insertions(+), 22 deletions(-)
Title: A Model-based Approach to Identify Binding Sites in CLIP-Seq
Data
Diff between MiClip versions 1.2 dated 2013-11-16 and 1.3 dated 2014-11-26
Description: Cross-linking immunoprecipitation coupled with high-throughput sequencing (CLIP-Seq) has made it possible to identify targeting sites of RNA-binding proteins in various cell culture systems and tissue types on a genome-wide scale. Here we present MiClip,a novel model-based approach to identify high-confidence protein-RNA binding sites in CLIP-Seq datasets. This approach assigns confidence value to each binding site on a probabilistic basis. The MiClip package can be flexibly applied to analyze both HITS-CLIP data and PAR-CLIP data.
Author: Tao Wang
Maintainer: Tao Wang
DESCRIPTION | 8 ++++----
MD5 | 12 +++++++-----
NEWS | 3 +++
R/MiClip.read.R | 8 ++++++--
build |only
exec/merge_pair.pl | 4 ++++
inst/doc/MiClip_vignette.R |only
vignettes/MiClip_vignette.Rnw | 2 --
8 files changed, 24 insertions(+), 13 deletions(-)
Title: Spatially explicit capture-recapture
Diff between secr versions 2.9.1 dated 2014-11-18 and 2.9.2 dated 2014-11-26
Description: Functions to estimate the density and size of a spatially distributed animal population sampled with an array of passive detectors, such as traps, or by searching polygons or transects. Models incorporating distance-dependent detection are fitted by maximizing the likelihood. Tools are included for data manipulation and model selection.
Author: Murray Efford
Maintainer: Murray Efford
DESCRIPTION | 6 +++---
MD5 | 10 +++++-----
NEWS | 8 ++++++++
R/rbind.capthist.R | 12 ++++++++++--
R/secr.fit.R | 6 +++---
man/secr-package.Rd | 2 +-
6 files changed, 30 insertions(+), 14 deletions(-)
Title: Row-based functions for R objects.
Diff between rowr versions 1.0.1 dated 2014-08-15 and 1.1.1 dated 2014-11-26
Description: Rowr allows the manipulation of R objects as if they were
organized rows in a way that is familiar to people used to working with
databases. It allows more consistent and predictable output to common
functions, and generalizes a number of utility functions to to be failsafe
with any number and type of input objects.
Author: Craig Varrichio
Maintainer: Craig Varrichio
DESCRIPTION | 10 ++---
MD5 | 13 ++++--
NAMESPACE | 3 +
R/rowr.R | 103 ++++++++++++++++++++++++++++++++++++++++++++++++++----
man/coalesce.Rd | 7 +++
man/count.Rd | 4 +-
man/insertRows.Rd |only
man/rollApply.Rd |only
man/rowApply.Rd |only
9 files changed, 122 insertions(+), 18 deletions(-)
Title: Redraw Base Graphics Using grid Graphics
Diff between gridGraphics versions 0.1-1 dated 2014-11-25 and 0.1-2 dated 2014-11-26
Description: Functions to convert a page of plots drawn with the
graphics package into identical output drawn with the grid package.
The result looks like the original graphics-based plot, but consists
of grid grobs and viewports that can then be manipulated with
grid functions (e.g., edit grobs and revisit viewports).
Author: Paul Murrell [cre, aut]
Maintainer: Paul Murrell
DESCRIPTION | 6 +++---
MD5 | 7 ++++---
R/plotdiff.R | 15 +++++++++++++--
inst/NEWS.Rd |only
man/grid.echo.Rd | 11 +++++++++--
5 files changed, 29 insertions(+), 10 deletions(-)
Title: Sunter's sampling design
Diff between SunterSampling versions 1.0 dated 2012-05-08 and 1.0.1 dated 2014-11-26
More information about SunterSampling at CRAN
Description: Functions for drawing samples according to Sunter's
sampling design, and for computing first and second order
inclusion probabilities
Author: Alessandro Barbiero, Giancarlo Manzi
Maintainer: alessandro.barbiero
SunterSampling-1.0.1/SunterSampling/DESCRIPTION | 9 +++++----
SunterSampling-1.0.1/SunterSampling/MD5 | 3 +--
SunterSampling-1.0/SunterSampling/doc |only
3 files changed, 6 insertions(+), 6 deletions(-)
Permanent link
Title: Friendly Regular Expressions
Diff between rex versions 0.1.2 dated 2014-10-31 and 0.2.0 dated 2014-11-26
Description: A more friendly, human-readable interface for the
construction of regular expressions.
Author: Kevin Ushey [aut],
Jim Hester [cre, aut]
Maintainer: Jim Hester
rex-0.1.2/rex/inst/doc/non-standard-evaluation.R |only
rex-0.1.2/rex/inst/doc/non-standard-evaluation.Rmd |only
rex-0.1.2/rex/inst/doc/non-standard-evaluation.html |only
rex-0.2.0/rex/DESCRIPTION | 8 +-
rex-0.2.0/rex/MD5 | 79 +++++++++-----------
rex-0.2.0/rex/R/capture.R | 2
rex-0.2.0/rex/R/match.R | 14 +--
rex-0.2.0/rex/R/shortcuts.R | 16 +++-
rex-0.2.0/rex/R/utils.R | 6 +
rex-0.2.0/rex/R/wildcards.R | 2
rex-0.2.0/rex/README.md | 2
rex-0.2.0/rex/build/vignette.rds |binary
rex-0.2.0/rex/inst/doc/log_parsing.Rmd | 17 ++--
rex-0.2.0/rex/inst/doc/log_parsing.html | 10 +-
rex-0.2.0/rex/inst/doc/url_parsing.R | 3
rex-0.2.0/rex/inst/doc/url_parsing.Rmd | 5 -
rex-0.2.0/rex/inst/doc/url_parsing.html | 7 -
rex-0.2.0/rex/man/as.regex.Rd | 1
rex-0.2.0/rex/man/capture.Rd | 1
rex-0.2.0/rex/man/character_class.Rd | 1
rex-0.2.0/rex/man/character_class_escape.Rd | 1
rex-0.2.0/rex/man/counts.Rd | 1
rex-0.2.0/rex/man/escape.Rd | 1
rex-0.2.0/rex/man/group.Rd | 1
rex-0.2.0/rex/man/lookarounds.Rd | 1
rex-0.2.0/rex/man/not.Rd | 1
rex-0.2.0/rex/man/or.Rd | 1
rex-0.2.0/rex/man/pipe.Rd | 1
rex-0.2.0/rex/man/re_matches.Rd | 1
rex-0.2.0/rex/man/re_substitutes.Rd | 1
rex-0.2.0/rex/man/regex.Rd | 1
rex-0.2.0/rex/man/register_shortcuts.Rd | 1
rex-0.2.0/rex/man/rex.Rd | 1
rex-0.2.0/rex/man/rex_mode.Rd | 1
rex-0.2.0/rex/man/shortcuts.Rd | 13 +--
rex-0.2.0/rex/man/single_shortcuts.Rd | 4 -
rex-0.2.0/rex/man/wildcards.Rd | 1
rex-0.2.0/rex/tests/testthat/test-capture.R | 4 -
rex-0.2.0/rex/tests/testthat/test-common.R | 24 +++---
rex-0.2.0/rex/tests/testthat/test-match.R | 32 ++++----
rex-0.2.0/rex/tests/testthat/test-or.R | 9 +-
rex-0.2.0/rex/tests/testthat/test-wildcards.R | 8 +-
42 files changed, 156 insertions(+), 127 deletions(-)
More information about rclinicaltrials at CRAN
Permanent link
Title: Rasch Sampler
Diff between RaschSampler versions 0.8-6 dated 2012-07-07 and 0.8-7 dated 2014-11-26
Description: Sampling binary matrices with fixed margins
Author: Patrick Mair [cre, aut],
Reinhold Hatzinger [aut],
Norman D. Verhelst [aut]
Maintainer: Patrick Mair
RaschSampler-0.8-6/RaschSampler/COPYRIGHTS |only
RaschSampler-0.8-7/RaschSampler/DESCRIPTION | 27 ++++++------
RaschSampler-0.8-7/RaschSampler/MD5 | 7 +--
RaschSampler-0.8-7/RaschSampler/NAMESPACE | 1
RaschSampler-0.8-7/RaschSampler/man/RaschSampler-package.Rd | 6 +-
5 files changed, 21 insertions(+), 20 deletions(-)
Title: Mixtures of proportional hazard models.
Diff between mixPHM versions 0.7.0 dated 2008-12-16 and 0.7-1 dated 2014-11-26
Description: This package fits multiple variable mixtures of various parametric proportional hazard models using the EM-Algorithm. Proportionality restrictions can be imposed on the latent groups and/or on the variables. Several survival distributions can be specified. Missing values and censored values are allowed. Independence is assumed over the single variables.
Author: Patrick Mair [cre, aut],
Marcus Hudec [aut]
Maintainer: Patrick Mair
mixPHM-0.7-1/mixPHM/DESCRIPTION | 34 +++--
mixPHM-0.7-1/mixPHM/MD5 |only
mixPHM-0.7-1/mixPHM/NAMESPACE | 2
mixPHM-0.7-1/mixPHM/man/mixPHM-package.Rd | 14 +-
mixPHM-0.7-1/mixPHM/man/msBIC.Rd | 97 ++++++++--------
mixPHM-0.7-1/mixPHM/man/phmclust.Rd | 178 ++++++++++++++----------------
mixPHM-0.7-1/mixPHM/man/plot.hazard.Rd | 128 ++++++++++-----------
mixPHM-0.7.0/mixPHM/COPYING |only
mixPHM-0.7.0/mixPHM/COPYRIGHTS |only
9 files changed, 232 insertions(+), 221 deletions(-)
Title: A Fast Parameter Estimation Method for Evolutionary Biology
Diff between jaatha versions 2.6 dated 2014-09-03 and 2.7.0 dated 2014-11-26
Description: Jaatha is a composite likelihood method for inferring evolutionary
parameters using genetic data. Given a model of the evolutionary history of
two biological populations as well as SNP data from multiple individuals
from each population, it estimates model parameters like the time of
separation of both species.
Author: Paul Staab [aut, cre, cph],
Lisha Mathew [aut, cph],
Dirk Metzler [aut, cph, ths]
Maintainer: Paul Staab
jaatha-2.6/jaatha/R/summary_statistics.R |only
jaatha-2.6/jaatha/README |only
jaatha-2.6/jaatha/man/callMs.Rd |only
jaatha-2.6/jaatha/src/parse_output.cpp |only
jaatha-2.6/jaatha/src/sum_stat_polym_classes.cpp |only
jaatha-2.6/jaatha/tests/testsetup |only
jaatha-2.6/jaatha/tests/testthat/test-u-calc-likelihood.R |only
jaatha-2.6/jaatha/tests/testthat/test-u-confidence-intervals.R |only
jaatha-2.6/jaatha/tests/testthat/test-u-cpp-parse-output.R |only
jaatha-2.6/jaatha/tests/testthat/test-u-cpp-parse-seqgen.R |only
jaatha-2.6/jaatha/tests/testthat/test-u-cpp-parse-trees.R |only
jaatha-2.6/jaatha/tests/testthat/test-u-cpp-sumstat-fpc.R |only
jaatha-2.6/jaatha/tests/testthat/test-u-cpp-sumstat-jsfs.R |only
jaatha-2.6/jaatha/tests/testthat/test-u-cpp-sumstat-polym_classes.R |only
jaatha-2.6/jaatha/tests/testthat/test-u-demographic-model-class.R |only
jaatha-2.6/jaatha/tests/testthat/test-u-estimate-likelihood.R |only
jaatha-2.6/jaatha/tests/testthat/test-u-fit-glm.R |only
jaatha-2.6/jaatha/tests/testthat/test-u-fixed-bugs.R |only
jaatha-2.6/jaatha/tests/testthat/test-u-initial-search.R |only
jaatha-2.6/jaatha/tests/testthat/test-u-jaatha-class.R |only
jaatha-2.6/jaatha/tests/testthat/test-u-normalize.R |only
jaatha-2.6/jaatha/tests/testthat/test-u-read-fasta.R |only
jaatha-2.6/jaatha/tests/testthat/test-u-refined-search.R |only
jaatha-2.6/jaatha/tests/testthat/test-u-sim-likelihood.R |only
jaatha-2.6/jaatha/tests/testthat/test-u-sim-prog-ms.R |only
jaatha-2.6/jaatha/tests/testthat/test-u-sim-prog-msms.r |only
jaatha-2.6/jaatha/tests/testthat/test-u-sim-prog-seqgen.R |only
jaatha-2.6/jaatha/tests/testthat/test-u-sim-program.R |only
jaatha-2.6/jaatha/tests/testthat/test-u-simulate-within-block.R |only
jaatha-2.6/jaatha/tests/testthat/test-u-sum-stat-fpc.R |only
jaatha-2.7.0/jaatha/DESCRIPTION | 20
jaatha-2.7.0/jaatha/MD5 | 197 +++---
jaatha-2.7.0/jaatha/NAMESPACE | 2
jaatha-2.7.0/jaatha/NEWS | 297 ++++++----
jaatha-2.7.0/jaatha/R/RcppExports.R | 30 -
jaatha-2.7.0/jaatha/R/confidence_intervals.R | 14
jaatha-2.7.0/jaatha/R/demographic_model.R | 106 ++-
jaatha-2.7.0/jaatha/R/helper_functions.R | 4
jaatha-2.7.0/jaatha/R/jaatha.R | 142 ++--
jaatha-2.7.0/jaatha/R/read_fasta.R | 4
jaatha-2.7.0/jaatha/R/run_simulations.R | 14
jaatha-2.7.0/jaatha/R/sim_program_ms.R | 78 --
jaatha-2.7.0/jaatha/R/sim_program_msms.R | 73 +-
jaatha-2.7.0/jaatha/R/sim_program_seqgen.R | 154 ++---
jaatha-2.7.0/jaatha/R/sum_stat_fpc.R | 105 ++-
jaatha-2.7.0/jaatha/R/sum_stat_generate.R |only
jaatha-2.7.0/jaatha/R/sum_stat_jsfs.R |only
jaatha-2.7.0/jaatha/R/sum_stat_pmc.R |only
jaatha-2.7.0/jaatha/README.md |only
jaatha-2.7.0/jaatha/man/Jaatha-class.Rd | 2
jaatha-2.7.0/jaatha/man/Jaatha.confidenceIntervals.Rd | 2
jaatha-2.7.0/jaatha/man/Jaatha.getCIsFromLogs.Rd | 2
jaatha-2.7.0/jaatha/man/Jaatha.getLikelihoods.Rd | 2
jaatha-2.7.0/jaatha/man/Jaatha.getStartingPoints.Rd | 2
jaatha-2.7.0/jaatha/man/Jaatha.initialSearch.Rd | 2
jaatha-2.7.0/jaatha/man/Jaatha.initialize.Rd | 6
jaatha-2.7.0/jaatha/man/Jaatha.refinedSearch.Rd | 2
jaatha-2.7.0/jaatha/man/Jaatha.setSeqgenExecutable.Rd | 2
jaatha-2.7.0/jaatha/man/addFeature.Rd | 37 -
jaatha-2.7.0/jaatha/man/calcJsfs.Rd |only
jaatha-2.7.0/jaatha/man/calculateJsfs.Rd | 2
jaatha-2.7.0/jaatha/man/checkType.Rd | 2
jaatha-2.7.0/jaatha/man/convertSimResultsToDataFrame.Rd | 2
jaatha-2.7.0/jaatha/man/denormalize.Rd | 2
jaatha-2.7.0/jaatha/man/dm.addGrowth.Rd | 20
jaatha-2.7.0/jaatha/man/dm.addMigration.Rd | 28
jaatha-2.7.0/jaatha/man/dm.addMutation.Rd | 28
jaatha-2.7.0/jaatha/man/dm.addMutationRateHeterogenity.Rd | 26
jaatha-2.7.0/jaatha/man/dm.addOutgroup.Rd | 2
jaatha-2.7.0/jaatha/man/dm.addParameter.Rd | 2
jaatha-2.7.0/jaatha/man/dm.addRecombination.Rd | 28
jaatha-2.7.0/jaatha/man/dm.addSampleSize.Rd | 2
jaatha-2.7.0/jaatha/man/dm.addSizeChange.Rd | 20
jaatha-2.7.0/jaatha/man/dm.addSpeciationEvent.Rd | 18
jaatha-2.7.0/jaatha/man/dm.addSummaryStatistic.Rd | 2
jaatha-2.7.0/jaatha/man/dm.addSymmetricMigration.Rd | 14
jaatha-2.7.0/jaatha/man/dm.createDemographicModel.Rd | 2
jaatha-2.7.0/jaatha/man/dm.createThetaTauModel.Rd | 2
jaatha-2.7.0/jaatha/man/dm.getGroups.Rd | 2
jaatha-2.7.0/jaatha/man/dm.getLociLength.Rd | 2
jaatha-2.7.0/jaatha/man/dm.getLociNumber.Rd | 2
jaatha-2.7.0/jaatha/man/dm.setLociLength.Rd | 2
jaatha-2.7.0/jaatha/man/dm.setLociNumber.Rd | 2
jaatha-2.7.0/jaatha/man/dm.setMutationModel.Rd | 10
jaatha-2.7.0/jaatha/man/dm.simSumStats.Rd | 2
jaatha-2.7.0/jaatha/man/estimateLogLikelihood.Rd | 2
jaatha-2.7.0/jaatha/man/findBestParInBlock.Rd | 2
jaatha-2.7.0/jaatha/man/fitGlm.Rd | 2
jaatha-2.7.0/jaatha/man/fitGlmPoiTransformed.Rd | 2
jaatha-2.7.0/jaatha/man/fitPoiSmoothed.Rd | 2
jaatha-2.7.0/jaatha/man/jaatha-package.Rd | 2
jaatha-2.7.0/jaatha/man/normalize.Rd | 2
jaatha-2.7.0/jaatha/man/runSimulations.Rd | 2
jaatha-2.7.0/jaatha/man/setCores.Rd | 2
jaatha-2.7.0/jaatha/man/simulateWithinBlock.Rd | 2
jaatha-2.7.0/jaatha/src/RcppExports.cpp | 83 +-
jaatha-2.7.0/jaatha/src/parse_ms_output.cpp |only
jaatha-2.7.0/jaatha/src/parse_seqgen_output.cpp |only
jaatha-2.7.0/jaatha/src/parse_trees.cpp | 155 +++--
jaatha-2.7.0/jaatha/src/seg_sites.h |only
jaatha-2.7.0/jaatha/src/sum_stat_fpc.cpp | 117 +--
jaatha-2.7.0/jaatha/src/sum_stat_jsfs.cpp | 60 +-
jaatha-2.7.0/jaatha/src/sum_stat_pmc.cpp |only
jaatha-2.7.0/jaatha/tests/integration/test-00-test-setup.R | 4
jaatha-2.7.0/jaatha/tests/integration/test-01-initial-search.R | 3
jaatha-2.7.0/jaatha/tests/testthat/setup-custom-simulation-interface.R |only
jaatha-2.7.0/jaatha/tests/testthat/setup-demographic-models.R |only
jaatha-2.7.0/jaatha/tests/testthat/test-aaa-setup.R | 4
jaatha-2.7.0/jaatha/tests/testthat/test-calc-likelihood.R |only
jaatha-2.7.0/jaatha/tests/testthat/test-confidence-intervals.R |only
jaatha-2.7.0/jaatha/tests/testthat/test-demographic-model-class.R |only
jaatha-2.7.0/jaatha/tests/testthat/test-estimate-likelihood.R |only
jaatha-2.7.0/jaatha/tests/testthat/test-fit-glm.R |only
jaatha-2.7.0/jaatha/tests/testthat/test-initial-search.R |only
jaatha-2.7.0/jaatha/tests/testthat/test-jaatha-class.R |only
jaatha-2.7.0/jaatha/tests/testthat/test-normalize.R |only
jaatha-2.7.0/jaatha/tests/testthat/test-parse-ms-output.R |only
jaatha-2.7.0/jaatha/tests/testthat/test-parse-seqgen-output.R |only
jaatha-2.7.0/jaatha/tests/testthat/test-parse-trees.R |only
jaatha-2.7.0/jaatha/tests/testthat/test-read-fasta.R |only
jaatha-2.7.0/jaatha/tests/testthat/test-refined-search.R |only
jaatha-2.7.0/jaatha/tests/testthat/test-sim-likelihood.R |only
jaatha-2.7.0/jaatha/tests/testthat/test-sim-program.R |only
jaatha-2.7.0/jaatha/tests/testthat/test-simprog-ms.R |only
jaatha-2.7.0/jaatha/tests/testthat/test-simprog-msms.R |only
jaatha-2.7.0/jaatha/tests/testthat/test-simprog-seqgen.R |only
jaatha-2.7.0/jaatha/tests/testthat/test-simulate-within-block.R |only
jaatha-2.7.0/jaatha/tests/testthat/test-sumstat-fpc.R |only
jaatha-2.7.0/jaatha/tests/testthat/test-sumstat-jsfs.R |only
jaatha-2.7.0/jaatha/tests/testthat/test-sumstat-pmc.R |only
jaatha-2.7.0/jaatha/tests/testthat/test-zzz-temp-files.R |only
131 files changed, 1102 insertions(+), 867 deletions(-)
Title: Iterated Racing Procedures
Diff between irace versions 1.05 dated 2014-07-09 and 1.06 dated 2014-11-26
Description: Iterated racing for automatic algorithm configuration
Author: Manuel López-Ibáñez, Jérémie Dubois-Lacoste, Leslie Pérez Cáceres,
Thomas Stützle, Mauro Birattari, Eric Yuan and Prasanna Balaprakash
Maintainer: Manuel López-Ibáñez
irace-1.05/irace/BUGS |only
irace-1.06/irace/DESCRIPTION | 14 +-
irace-1.06/irace/MD5 | 27 ++--
irace-1.06/irace/NEWS | 36 ++++--
irace-1.06/irace/R/irace.R | 41 +++++--
irace-1.06/irace/R/main.R | 4
irace-1.06/irace/R/race-wrapper.R | 10 +
irace-1.06/irace/R/readConfiguration.R | 26 ++--
irace-1.06/irace/R/utils.R | 15 +-
irace-1.06/irace/R/version.R | 2
irace-1.06/irace/README | 140 ++++++++++++++++++------
irace-1.06/irace/inst/templates/candidates.tmpl | 13 ++
irace-1.06/irace/inst/templates/forbidden.tmpl | 3
irace-1.06/irace/inst/templates/tune-conf.tmpl | 7 +
irace-1.06/irace/man/irace-package.Rd | 4
15 files changed, 249 insertions(+), 93 deletions(-)
Title: Procedures to Generate Patterns under Computerized Adaptive
Testing
Diff between catR versions 3.2 dated 2014-09-10 and 3.3 dated 2014-11-26
Description: Generation of response patterns under computerized adaptive testing (CAT) framework, with the choice of several item response theory (IRT) models, starting rules, next item selection routines, stopping rules and ability estimators.
Author: David Magis (U Liege, Belgium), Gilles Raiche (UQAM, Canada), Juan Ramon Barrada (U Zaragoza, Spain)
Maintainer: David Magis
DESCRIPTION | 13 +++++++------
MD5 | 10 +++++-----
NEWS | 22 ++++++++++++++++++++++
R/nextItem.R | 10 +++-------
R/simulateRespondents.R | 2 +-
man/nextItem.Rd | 4 ++--
6 files changed, 40 insertions(+), 21 deletions(-)
More information about BayesianAnimalTracker at CRAN
Permanent link
Title: Aspects of Multivariables
Diff between aspect versions 1.0-2 dated 2013-12-03 and 1.0-3 dated 2014-11-26
Description: This package consists of two main functions: The first function is corAspect() performs optimal scaling by maximizing an aspect (i.e. a target function such as the sum of eigenvalues, sum of squared correlations, squared multiple correlations, etc.) of the corresponding correlation matrix. The second function is lineals() performs optimal scaling by minimization a non-correlational aspect based on pairwise correlations and correlation ratios. The resulting correlation matrix and category scores can be used for further multivariate methods such as SEM. A platform including related PsychoR packages is provided on R-Forge.
Author: Patrick Mair [cre, aut],
Jan De Leeuw [aut]
Maintainer: Patrick Mair
aspect-1.0-2/aspect/COPYING |only
aspect-1.0-3/aspect/DESCRIPTION | 24 +++++++++++++-----------
aspect-1.0-3/aspect/MD5 | 9 ++++-----
aspect-1.0-3/aspect/data/duncan.rda |binary
aspect-1.0-3/aspect/data/galo.rda |binary
aspect-1.0-3/aspect/data/wurzer.rda |binary
6 files changed, 17 insertions(+), 16 deletions(-)
Title: Agricultural Datasets
Diff between agridat versions 1.9 dated 2014-07-02 and 1.10 dated 2014-11-26
Description: Datasets from books, papers, and websites related to agriculture. Example analyses are included. Includes functions for plotting field designs and GGE biplots.
Author: Kevin Wright
Maintainer: Kevin Wright
agridat-1.10/agridat/DESCRIPTION | 19 -
agridat-1.10/agridat/MD5 | 216 ++++++++---------
agridat-1.10/agridat/NAMESPACE | 20 -
agridat-1.10/agridat/NEWS | 29 +-
agridat-1.10/agridat/R/desplot.r | 16 -
agridat-1.10/agridat/R/gge.r | 12
agridat-1.10/agridat/build/vignette.rds |binary
agridat-1.10/agridat/data/beaven.barley.txt.gz |only
agridat-1.10/agridat/data/datalist | 3
agridat-1.10/agridat/data/perry.springwheat.txt.gz |only
agridat-1.10/agridat/data/ridout.appleshoots.txt.gz |only
agridat-1.10/agridat/inst/doc/agridat_examples.R |only
agridat-1.10/agridat/inst/doc/agridat_examples.Rnw |only
agridat-1.10/agridat/inst/doc/agridat_examples.pdf |only
agridat-1.10/agridat/man/adugna.sorghum.Rd | 4
agridat-1.10/agridat/man/agridat.Rd | 25 +
agridat-1.10/agridat/man/allcroft.lodging.Rd | 1
agridat-1.10/agridat/man/archbold.apple.Rd | 3
agridat-1.10/agridat/man/australia.soybean.Rd | 2
agridat-1.10/agridat/man/batchelor.uniformity.Rd | 3
agridat-1.10/agridat/man/beaven.barley.Rd |only
agridat-1.10/agridat/man/besag.endive.Rd | 1
agridat-1.10/agridat/man/besag.met.Rd | 1
agridat-1.10/agridat/man/blackman.wheat.Rd | 2
agridat-1.10/agridat/man/bond.diallel.Rd | 1
agridat-1.10/agridat/man/box.cork.Rd | 1
agridat-1.10/agridat/man/brandle.rape.Rd | 1
agridat-1.10/agridat/man/brandt.switchback.Rd | 1
agridat-1.10/agridat/man/bridges.cucmber.Rd | 1
agridat-1.10/agridat/man/butron.maize.Rd | 2
agridat-1.10/agridat/man/byers.apple.Rd | 1
agridat-1.10/agridat/man/caribbean.maize.Rd | 3
agridat-1.10/agridat/man/cleveland.soil.Rd | 1
agridat-1.10/agridat/man/cochran.eelworms.Rd | 1
agridat-1.10/agridat/man/cochran.wireworms.Rd | 1
agridat-1.10/agridat/man/connolly.potato.Rd | 2
agridat-1.10/agridat/man/cornelius.maize.Rd | 1
agridat-1.10/agridat/man/crowder.seeds.Rd | 55 ++++
agridat-1.10/agridat/man/cullis.earlygen.Rd | 28 ++
agridat-1.10/agridat/man/desplot.Rd | 19 +
agridat-1.10/agridat/man/digby.jointregression.Rd | 1
agridat-1.10/agridat/man/durban.competition.Rd | 1
agridat-1.10/agridat/man/durban.splitplot.Rd | 1
agridat-1.10/agridat/man/eden.potato.Rd | 1
agridat-1.10/agridat/man/engelstad.nitro.Rd | 1
agridat-1.10/agridat/man/fan.stability.Rd | 3
agridat-1.10/agridat/man/federer.diagcheck.Rd | 45 ++-
agridat-1.10/agridat/man/federer.tobacco.Rd | 3
agridat-1.10/agridat/man/foulley.calving.Rd | 1
agridat-1.10/agridat/man/gathmann.bt.Rd | 1
agridat-1.10/agridat/man/gge.Rd | 10
agridat-1.10/agridat/man/gilmour.slatehall.Rd | 1
agridat-1.10/agridat/man/gomez.multilocsplitplot.Rd | 1
agridat-1.10/agridat/man/gomez.nitrogen.Rd | 2
agridat-1.10/agridat/man/gomez.seedrate.Rd | 1
agridat-1.10/agridat/man/hanks.sprinkler.Rd | 2
agridat-1.10/agridat/man/harris.wateruse.Rd | 1
agridat-1.10/agridat/man/hayman.tobacco.Rd | 2
agridat-1.10/agridat/man/heady.fertilizer.Rd | 1
agridat-1.10/agridat/man/hernandez.nitrogen.Rd | 1
agridat-1.10/agridat/man/hildebrand.systems.Rd | 2
agridat-1.10/agridat/man/holshouser.splitstrip.Rd | 1
agridat-1.10/agridat/man/hughes.grapes.Rd | 4
agridat-1.10/agridat/man/hunter.corn.Rd | 1
agridat-1.10/agridat/man/ivins.herbs.Rd | 1
agridat-1.10/agridat/man/john.alpha.Rd | 2
agridat-1.10/agridat/man/johnson.blight.Rd | 1
agridat-1.10/agridat/man/kang.peanut.Rd | 2
agridat-1.10/agridat/man/kempton.barley.uniformity.Rd | 6
agridat-1.10/agridat/man/kempton.slatehall.Rd | 1
agridat-1.10/agridat/man/lasrosas.corn.Rd | 1
agridat-1.10/agridat/man/lavoranti.eucalyptus.Rd | 5
agridat-1.10/agridat/man/lee.potatoblight.Rd | 1
agridat-1.10/agridat/man/lonnquist.maize.Rd | 2
agridat-1.10/agridat/man/lyons.wheat.Rd | 1
agridat-1.10/agridat/man/mcleod.barley.Rd | 2
agridat-1.10/agridat/man/mead.cauliflower.Rd | 1
agridat-1.10/agridat/man/mead.germination.Rd | 1
agridat-1.10/agridat/man/mercer.mangold.uniformity.Rd | 4
agridat-1.10/agridat/man/mercer.wheat.uniformity.Rd | 8
agridat-1.10/agridat/man/minnesota.barley.yield.Rd | 1
agridat-1.10/agridat/man/nass.corn.Rd | 1
agridat-1.10/agridat/man/pearl.kernels.Rd | 1
agridat-1.10/agridat/man/perry.springwheat.Rd |only
agridat-1.10/agridat/man/piepho.cooksfoot.Rd | 1
agridat-1.10/agridat/man/ridout.appleshoots.Rd |only
agridat-1.10/agridat/man/rothamsted.brussels.Rd | 1
agridat-1.10/agridat/man/salmon.bunt.Rd | 1
agridat-1.10/agridat/man/shafii.rapeseed.Rd | 1
agridat-1.10/agridat/man/sinclair.clover.Rd | 1
agridat-1.10/agridat/man/smith.corn.uniformity.Rd | 2
agridat-1.10/agridat/man/snedecor.asparagus.Rd | 2
agridat-1.10/agridat/man/snijders.fusarium.Rd | 1
agridat-1.10/agridat/man/steel.soybean.Rd | 1
agridat-1.10/agridat/man/stirret.borers.Rd | 1
agridat-1.10/agridat/man/streibig.competition.Rd | 1
agridat-1.10/agridat/man/student.barley.Rd | 2
agridat-1.10/agridat/man/theobald.covariate.Rd | 1
agridat-1.10/agridat/man/turner.herbicide.Rd | 2
agridat-1.10/agridat/man/vsn.lupin3.Rd | 1
agridat-1.10/agridat/man/wallace.iowaland.Rd | 1
agridat-1.10/agridat/man/walsh.cottonprice.Rd | 1
agridat-1.10/agridat/man/wedderburn.barley.Rd | 1
agridat-1.10/agridat/man/welch.bermudagrass.Rd | 96 ++++++-
agridat-1.10/agridat/man/williams.trees.Rd | 2
agridat-1.10/agridat/man/yang.barley.Rd | 1
agridat-1.10/agridat/man/yates.oats.Rd | 25 +
agridat-1.10/agridat/vignettes/agridat-concordance.tex |only
agridat-1.10/agridat/vignettes/agridat.bib | 3
agridat-1.10/agridat/vignettes/agridat_examples.Rnw |only
agridat-1.10/agridat/vignettes/sinclair-clover.png |binary
agridat-1.9/agridat/R/vc.r |only
agridat-1.9/agridat/inst/doc/agridat.R |only
agridat-1.9/agridat/inst/doc/agridat.pdf |only
agridat-1.9/agridat/inst/doc/agridat.rnw |only
agridat-1.9/agridat/man/vc-methods.Rd |only
agridat-1.9/agridat/vignettes/agridat.rnw |only
agridat-1.9/agridat/vignettes/agridat.sty |only
118 files changed, 539 insertions(+), 216 deletions(-)
Title: Sensitivity Analysis
Diff between sensitivity versions 1.9 dated 2014-08-26 and 1.10 dated 2014-11-26
Description: A collection of functions for factor screening, global sensitivity analysis and reliability sensitivity analysis of model output.
Author: Gilles Pujol, Bertrand Iooss, Alexandre Janon with contributions from Paul Lemaitre, Laurent Gilquin, Loic Le Gratiet, Taieb Touati, Bernardo Ramos, Jana Fruth and Sebastien Da Veiga
Maintainer: Bertrand Iooss
DESCRIPTION | 10
MD5 | 22 -
NAMESPACE | 12
R/PoincareConstant.R | 3
R/sobolGP.R | 5
R/sobolTIIlo.R |only
R/sobolTIIpf.R |only
R/sobolowen.R | 3
R/sobolroalhs.R | 686 +++++++++++++++++++++++----------------------
man/morris.Rd | 5
man/sensitivity-package.Rd | 7
man/sobolTIIlo.Rd |only
man/sobolTIIpf.Rd |only
man/sobolroalhs.Rd | 57 ++-
14 files changed, 433 insertions(+), 377 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2008-07-07 0.1
Title: Adapt Numerical Records To Fit (In)Equality Restrictions
Diff between rspa versions 0.1-5 dated 2014-05-16 and 0.1-6 dated 2014-11-26
Description: Based on (optionally sparse) quadratic optimization with the main
algorithms implemented in C. Includes features for easy processing of many
(smaller) records. The algorithm has been tested on fairly large
optimization problems with up to a few million variables and several
hundred thousand restrictions.
Author: Mark van der Loo
Maintainer: Mark van der Loo
rspa-0.1-5/rspa/inst/tests/adjust.R |only
rspa-0.1-5/rspa/inst/tests/sparseConstraints.R |only
rspa-0.1-5/rspa/inst/tests/utils.R |only
rspa-0.1-5/rspa/vignettes/figure |only
rspa-0.1-6/rspa/DESCRIPTION | 10 ++---
rspa-0.1-6/rspa/MD5 | 34 ++++++++++----------
rspa-0.1-6/rspa/NAMESPACE | 2 -
rspa-0.1-6/rspa/NEWS | 4 ++
rspa-0.1-6/rspa/R/adjustRecords.R | 2 -
rspa-0.1-6/rspa/inst/tests/test_adjust.R |only
rspa-0.1-6/rspa/inst/tests/test_adjustRecords.R |only
rspa-0.1-6/rspa/inst/tests/test_sparseConstraints.R |only
rspa-0.1-6/rspa/inst/tests/test_utils.R |only
rspa-0.1-6/rspa/man/adjust.Rd | 14 ++++----
rspa-0.1-6/rspa/man/adjustRecords.Rd | 2 -
rspa-0.1-6/rspa/man/adjusted.Rd | 2 -
rspa-0.1-6/rspa/man/adjustedRecords.Rd | 2 -
rspa-0.1-6/rspa/man/rspa-package.Rd | 2 -
rspa-0.1-6/rspa/man/sparseConstraints.Rd | 2 -
rspa-0.1-6/rspa/src/maxdist.c | 10 +++++
rspa-0.1-6/rspa/src/maxdist.h | 2 +
rspa-0.1-6/rspa/src/sc_arith.c | 2 -
22 files changed, 52 insertions(+), 38 deletions(-)
Title: Design and Analysis of Dose-Finding Studies (see also
DoseFinding package)
Diff between MCPMod versions 1.0-7 dated 2010-07-24 and 1.0-8 dated 2014-11-26
Description: This package implements a methodology for the design and analysis of
dose-response studies that combines aspects of multiple comparison procedures
and modeling approaches (Bretz, Pinheiro and Branson, 2005, Biometrics 61, 738-748).
The package provides tools for the analysis of dose finding trials as well as a variety
of tools necessary to plan a trial to be conducted with the MCPMod methodology.
***NOTE*** The MCPMod package will not be further developed, all future development of
the MCP-Mod methodology will be done in the DoseFinding R-package. ***NOTE***
Author: Bjoern Bornkamp, Jose Pinheiro and Frank Bretz
Maintainer: Bjoern Bornkamp
MCPMod-1.0-7/MCPMod/LICENSE |only
MCPMod-1.0-7/MCPMod/data/IBS.txt |only
MCPMod-1.0-7/MCPMod/data/biom.txt |only
MCPMod-1.0-8/MCPMod/ChangeLog | 5 +++++
MCPMod-1.0-8/MCPMod/DESCRIPTION | 26 ++++++++++++--------------
MCPMod-1.0-8/MCPMod/MD5 |only
MCPMod-1.0-8/MCPMod/data/IBS.txt.gz |only
MCPMod-1.0-8/MCPMod/data/biom.txt.gz |only
MCPMod-1.0-8/MCPMod/inst/doc/MCPMod.pdf |binary
MCPMod-1.0-8/MCPMod/man/MCPMod-package.Rd | 4 ++--
MCPMod-1.0-8/MCPMod/tests/MMTests.R | 4 ++--
11 files changed, 21 insertions(+), 18 deletions(-)
Title: Citations for knitr markdown files
Diff between knitcitations versions 1.0.4 dated 2014-10-28 and 1.0.5 dated 2014-11-26
Description: knitcitations provides the ability to create dynamic citations
in which the bibliographic information is pulled from the web rather
than having to be entered into a local database such as bibtex ahead of
time. Knitcitations is primarily aimed at authoring in the R markdown
format, and can provide outputs for web-based authoring such as linked
text and tooltips over inline citations. Cite using a DOI, URL, or
bibtex file key. See the package URL for details.
Author: Carl Boettiger [aut, cre]
Maintainer: Carl Boettiger
DESCRIPTION | 8 ++++----
LICENSE |only
MD5 | 17 +++++++++--------
NEWS | 5 +++++
README.md | 2 +-
build/vignette.rds |binary
inst/doc/tutorial.Rmd | 2 +-
inst/doc/tutorial.pdf |binary
vignettes/tutorial.Rmd | 2 +-
vignettes/tutorial.md | 2 +-
10 files changed, 22 insertions(+), 16 deletions(-)
Title: R Commander Plug-in for the EZR (Easy R) Package
Diff between RcmdrPlugin.EZR versions 1.26 dated 2014-09-29 and 1.27 dated 2014-11-26
More information about RcmdrPlugin.EZR at CRAN
Description: EZR (Easy R) adds a variety of statistical functions, including survival analyses, ROC analyses, metaanalyses, sample size calculation, and so on, to the R commander. EZR enables point-and-click easy access to statistical functions, especially for medical statistics. EZR is platform-independent and runs on Windows, Mac OS X, and UNIX. Its complete manual is available only in Japanese (Chugai Igakusha, ISBN-10: 4498109007), but an report that introduced the investigation of EZR was published in Bone Marrow Transplantation (Nature Publishing Group) as an Open article. This report can be used as a simple manual. It can be freely downloaded from the journal website as shown below.
Author: Yoshinobu Kanda
Maintainer: Yoshinobu Kanda
RcmdrPlugin.EZR-1.26/RcmdrPlugin.EZR/inst/doc/EZR.html |only
RcmdrPlugin.EZR-1.27/RcmdrPlugin.EZR/DESCRIPTION | 10
RcmdrPlugin.EZR-1.27/RcmdrPlugin.EZR/MD5 | 19
RcmdrPlugin.EZR-1.27/RcmdrPlugin.EZR/NEWS | 8
RcmdrPlugin.EZR-1.27/RcmdrPlugin.EZR/R/EZR.R | 113 ++-
RcmdrPlugin.EZR-1.27/RcmdrPlugin.EZR/inst/CHANGES | 8
RcmdrPlugin.EZR-1.27/RcmdrPlugin.EZR/inst/doc/EZR.htm | 299 ++++------
RcmdrPlugin.EZR-1.27/RcmdrPlugin.EZR/inst/doc/EZR.pdf |binary
RcmdrPlugin.EZR-1.27/RcmdrPlugin.EZR/inst/po/ja/LC_MESSAGES/R-RcmdrPlugin.EZR.mo |binary
RcmdrPlugin.EZR-1.27/RcmdrPlugin.EZR/man/EZR.Rd | 4
RcmdrPlugin.EZR-1.27/RcmdrPlugin.EZR/po/R-RcmdrPlugin.EZR.po | 32 +
11 files changed, 292 insertions(+), 201 deletions(-)
Permanent link
Title: Bayesian NHMM Modeling (Multiple Time Series)
Diff between NHMM versions 3.3 dated 2014-09-23 and 3.5 dated 2014-11-26
Description: Bayesian NHMM modeling for multiple time series. The emission distribution can be mixtures of Gammas, Poissons, Normals and zero inflation is possible.
Author: Tracy Holsclaw
Maintainer: Tracy Holsclaw
DESCRIPTION | 19 +++++++++++++-----
MD5 | 22 +++++++++++----------
R/CresetX.R | 2 -
R/NHMMMVNmain.R | 8 +++----
R/NHMMmain.R | 28 ++++++++++++++++++---------
R/RcppExports.R | 8 +++++--
R/RgetGammatheta.R | 51 ++++++++++++++++++++++++++++++++------------------
src/RcppExports.cpp | 23 ++++++++++++++++++----
src/rcpp_getNQQ.cpp | 6 ++---
src/rcpp_getvvv.cpp | 9 ++++++--
src/rcpp_getymiss.cpp | 2 +
src/rcpp_resetX.cpp |only
src/rcpp_resetX.h |only
13 files changed, 120 insertions(+), 58 deletions(-)
Title: Basic Module Functions
Diff between moduleColor versions 1.08-1 dated 2009-10-11 and 1.08-3 dated 2014-11-26
Description: Methods for color labeling, calculation of eigengenes, merging of closely related modules.
Author: Peter Langfelder
Maintainer: Peter Langfelder
moduleColor-1.08-1/moduleColor/support |only
moduleColor-1.08-3/moduleColor/Changelog | 8 ++++++
moduleColor-1.08-3/moduleColor/DESCRIPTION | 17 ++++++-------
moduleColor-1.08-3/moduleColor/MD5 |only
moduleColor-1.08-3/moduleColor/R/Functions.R | 18 +++++++-------
moduleColor-1.08-3/moduleColor/man/moduleColor-package.Rd | 8 ++----
6 files changed, 28 insertions(+), 23 deletions(-)
Title: Functions For Performing Hierarchical Analysis of Distance
Sampling Data
Diff between hierarchicalDS versions 2.01 dated 2012-09-28 and 2.9 dated 2014-11-26
More information about hierarchicalDS at CRAN
Description: Functions for performing hierarchical analysis of distance
sampling data, with ability to use an areal spatial ICAR model on
top of user supplied covariates to get at variation in abundance
intensity. The detection model can be specified as a function of
observer and individual covariates, where a parametric model is
supposed for the population level distribution of covariate values.
The model uses data augmentation and a reversible jump MCMC
algorithm to sample animals that were never observed. Also
included is the ability to include point independence (increasing
correlation multiple observer's observations as a function of
distance, with independence assumed for distance=0 or first
distance bin), as well as the ability to model species
misclassification rates using a multinomial logit formulation on data
from double observers. New in version 2.1 is the ability to
include zero inflation, but this is only recommended for cases where
sample sizes and spatial coverage of the survey are high.
Author: P.B. Conn \email{paul.conn@@noaa.gov}
Maintainer: Paul B Conn
hierarchicalDS-2.01/hierarchicalDS/TWS2012_Conn.aux |only
hierarchicalDS-2.01/hierarchicalDS/TWS2012_Conn.bbl |only
hierarchicalDS-2.01/hierarchicalDS/TWS2012_Conn.blg |only
hierarchicalDS-2.01/hierarchicalDS/TWS2012_Conn.log |only
hierarchicalDS-2.01/hierarchicalDS/TWS2012_Conn.nav |only
hierarchicalDS-2.01/hierarchicalDS/TWS2012_Conn.out |only
hierarchicalDS-2.01/hierarchicalDS/TWS2012_Conn.pdf |only
hierarchicalDS-2.01/hierarchicalDS/TWS2012_Conn.snm |only
hierarchicalDS-2.01/hierarchicalDS/TWS2012_Conn.tex |only
hierarchicalDS-2.01/hierarchicalDS/TWS2012_Conn.tex.sav |only
hierarchicalDS-2.01/hierarchicalDS/TWS2012_Conn.toc |only
hierarchicalDS-2.01/hierarchicalDS/inst/example_analysis.R |only
hierarchicalDS-2.9/hierarchicalDS/DESCRIPTION | 48 -
hierarchicalDS-2.9/hierarchicalDS/MD5 | 165 +++-
hierarchicalDS-2.9/hierarchicalDS/NAMESPACE | 13
hierarchicalDS-2.9/hierarchicalDS/R/hierarchical_DS.R | 109 +-
hierarchicalDS-2.9/hierarchicalDS/R/mcmc_ds.R | 387 ++++++---
hierarchicalDS-2.9/hierarchicalDS/R/simulate_data.R | 297 +++----
hierarchicalDS-2.9/hierarchicalDS/R/spat_funcs.R | 261 +++++-
hierarchicalDS-2.9/hierarchicalDS/data/datalist |only
hierarchicalDS-2.9/hierarchicalDS/data/sim_out.rda |only
hierarchicalDS-2.9/hierarchicalDS/data/simdata.rda |only
hierarchicalDS-2.9/hierarchicalDS/inst/HierarchicalDS_vignette.Rnw |only
hierarchicalDS-2.9/hierarchicalDS/inst/HierarchicalDS_vignette.log |only
hierarchicalDS-2.9/hierarchicalDS/inst/HierarchicalDS_vignette.pdf |only
hierarchicalDS-2.9/hierarchicalDS/inst/HierarchicalDS_vignette.tex |only
hierarchicalDS-2.9/hierarchicalDS/inst/HierarchicalDS_vignette.toc |only
hierarchicalDS-2.9/hierarchicalDS/inst/NEWS.txt | 22
hierarchicalDS-2.9/hierarchicalDS/inst/cache |only
hierarchicalDS-2.9/hierarchicalDS/inst/figure |only
hierarchicalDS-2.9/hierarchicalDS/inst/simulate_data_overd.R |only
hierarchicalDS-2.9/hierarchicalDS/man/calc_linex_a.Rd | 18
hierarchicalDS-2.9/hierarchicalDS/man/convert.HDS.to.mcmc.Rd | 48 -
hierarchicalDS-2.9/hierarchicalDS/man/generate_inits.Rd | 36
hierarchicalDS-2.9/hierarchicalDS/man/generate_inits_misID.Rd | 58 -
hierarchicalDS-2.9/hierarchicalDS/man/get_confusion_array.Rd | 50 -
hierarchicalDS-2.9/hierarchicalDS/man/get_confusion_mat.Rd | 56 -
hierarchicalDS-2.9/hierarchicalDS/man/get_mod_matrix.Rd | 23
hierarchicalDS-2.9/hierarchicalDS/man/hierarchical_DS.Rd | 390 +++-------
hierarchicalDS-2.9/hierarchicalDS/man/linear_adj.Rd | 11
hierarchicalDS-2.9/hierarchicalDS/man/log_lambda_gradient.Rd | 26
hierarchicalDS-2.9/hierarchicalDS/man/log_lambda_log_likelihood.Rd | 32
hierarchicalDS-2.9/hierarchicalDS/man/mcmc_ds.Rd | 287 ++-----
hierarchicalDS-2.9/hierarchicalDS/man/plot_N_map.Rd |only
hierarchicalDS-2.9/hierarchicalDS/man/plot_obs_pred.Rd | 13
hierarchicalDS-2.9/hierarchicalDS/man/post_loss.Rd | 20
hierarchicalDS-2.9/hierarchicalDS/man/probit.fct.Rd | 43 -
hierarchicalDS-2.9/hierarchicalDS/man/rect_adj.Rd |only
hierarchicalDS-2.9/hierarchicalDS/man/rect_adj_RW2.Rd |only
hierarchicalDS-2.9/hierarchicalDS/man/rrw.Rd | 11
hierarchicalDS-2.9/hierarchicalDS/man/sim_out.Rd |only
hierarchicalDS-2.9/hierarchicalDS/man/simdata.Rd | 6
hierarchicalDS-2.9/hierarchicalDS/man/simulate_data.Rd | 90 --
hierarchicalDS-2.9/hierarchicalDS/man/square_adj.Rd | 11
hierarchicalDS-2.9/hierarchicalDS/man/stack_data.Rd | 25
hierarchicalDS-2.9/hierarchicalDS/man/stack_data_misID.Rd | 34
hierarchicalDS-2.9/hierarchicalDS/man/summary_N.Rd | 13
hierarchicalDS-2.9/hierarchicalDS/man/switch_pdf.Rd | 21
hierarchicalDS-2.9/hierarchicalDS/man/switch_sample.Rd | 22
hierarchicalDS-2.9/hierarchicalDS/man/switch_sample_prior.Rd | 22
hierarchicalDS-2.9/hierarchicalDS/man/table.mcmc.Rd | 22
61 files changed, 1415 insertions(+), 1275 deletions(-)
Permanent link
Title: Toolkit implementation of gWidgets for RGtk2
Diff between gWidgetsRGtk2 versions 0.0-82 dated 2013-11-11 and 0.0-83 dated 2014-11-26
Description: Port of gWidgets API to RGtk2
Author: Michael Lawrence, John Verzani
Maintainer: John Verzani
gWidgetsRGtk2-0.0-82/gWidgetsRGtk2/TODO.txt |only
gWidgetsRGtk2-0.0-83/gWidgetsRGtk2/DESCRIPTION | 9 ++++-----
gWidgetsRGtk2-0.0-83/gWidgetsRGtk2/MD5 | 11 +++++------
gWidgetsRGtk2-0.0-83/gWidgetsRGtk2/NAMESPACE | 1 +
gWidgetsRGtk2-0.0-83/gWidgetsRGtk2/NEWS | 6 ++++++
gWidgetsRGtk2-0.0-83/gWidgetsRGtk2/R/ggraphics.R | 2 --
gWidgetsRGtk2-0.0-83/gWidgetsRGtk2/man/gdfedit.Rd | 2 +-
7 files changed, 17 insertions(+), 14 deletions(-)