Title: Modeling Phylogenetic Signals using Eigenvector Maps
Diff between MPSEM versions 0.2-5 dated 2014-06-20 and 0.2-6 dated 2014-12-02
Description: Computational tools to represent phylogenetic signals using adapted eigenvector maps.
Author: Guillaume Guenard, with contribution from Pierre Legendre
Maintainer: Guillaume Guenard
DESCRIPTION | 9 +++++----
MD5 | 12 +++++++++---
NAMESPACE | 7 +++----
build |only
inst |only
man/MPSEM-package.Rd | 8 ++++++++
vignettes |only
7 files changed, 25 insertions(+), 11 deletions(-)
Title: International Assessment Data Manager
Diff between intsvy versions 1.4 dated 2014-09-11 and 1.5 dated 2014-12-02
Description: Provides tools for importing, merging, and analysing data from international assessment studies (TIMSS, PIRLS, PISA and PIAAC)
Author: Daniel Caro
Maintainer: Daniel Caro
DESCRIPTION | 9
MD5 | 181 ++++-----
NAMESPACE | 99 ++---
R/adj.input.R | 22 -
R/adj.measlev.R | 12
R/is.vlabeled.R | 24 -
R/piaac.ben.pv.R |only
R/piaac.mean.R | 74 +--
R/piaac.mean.pv.R | 20 -
R/piaac.reg.R | 96 ++---
R/piaac.reg.pv.R | 130 +++---
R/piaac.table.R | 26 -
R/pirls.ben.pv.R | 90 ++--
R/pirls.mean.R | 50 +-
R/pirls.mean.pv.R | 104 ++---
R/pirls.reg.R | 92 ++--
R/pirls.reg.pv.R | 112 ++---
R/pirls.rho.R | 62 +--
R/pirls.rho.pv.R | 146 +++----
R/pirls.select.merge.R | 486 ++++++++++++-------------
R/pirls.table.R | 86 ++--
R/pirls.var.label.R | 82 ++--
R/pisa.ben.pv.R | 132 +++---
R/pisa.mean.R | 66 +--
R/pisa.mean.pv.R | 166 ++++----
R/pisa.reg.R | 90 ++--
R/pisa.reg.pv.R | 124 +++---
R/pisa.select.merge.R | 350 +++++++++---------
R/pisa.table.R | 108 ++---
R/pisa.var.label.R | 94 ++--
R/plot.intsvy.mean.R | 72 +--
R/plot.intsvy.reg.R | 72 +--
R/plot.intsvy.table.R | 110 ++---
R/timss.ben.pv.R | 90 ++--
R/timss.mean.R | 52 +-
R/timss.mean.pv.R | 106 ++---
R/timss.reg.R | 92 ++--
R/timss.reg.pv.R | 112 ++---
R/timss.rho.R | 62 +--
R/timss.rho.pv.R | 146 +++----
R/timss.table.R | 86 ++--
R/timssg4.select.merge.R | 500 +++++++++++++-------------
R/timssg4.var.label.R | 82 ++--
R/timssg8.select.merge.R | 398 ++++++++++----------
R/timssg8.var.label.R | 80 ++--
README.md | 34 -
inst |only
man/adj.input.Rd | 71 +--
man/adj.measlev.Rd | 75 +--
man/intsvy-package.Rd | 40 +-
man/is.vlabeled.Rd | 71 +--
man/piaac.ben.pv.Rd |only
man/piaac.mean.Rd | 94 ++--
man/piaac.mean.pv.Rd | 96 ++---
man/piaac.reg.Rd | 104 ++---
man/piaac.reg.pv.Rd | 106 ++---
man/piaac.table.Rd | 94 ++--
man/pirls.ben.pv.Rd | 108 ++---
man/pirls.mean.Rd | 100 ++---
man/pirls.mean.pv.Rd | 104 ++---
man/pirls.reg.Rd | 122 +++---
man/pirls.reg.pv.Rd | 112 ++---
man/pirls.rho.Rd | 98 ++---
man/pirls.rho.pv.Rd | 102 ++---
man/pirls.select.merge.Rd | 96 ++---
man/pirls.table.Rd | 98 ++---
man/pirls.var.label.Rd | 74 +--
man/pisa.ben.pv.Rd | 98 ++---
man/pisa.mean.Rd | 110 ++---
man/pisa.mean.pv.Rd | 116 +++---
man/pisa.reg.Rd | 96 ++---
man/pisa.reg.pv.Rd | 106 ++---
man/pisa.select.merge.Rd | 118 +++---
man/pisa.table.Rd | 96 ++---
man/pisa.var.label.Rd | 96 ++---
man/plot.intsvy.mean.Rd | 134 +++---
man/plot.intsvy.reg.Rd | 112 ++---
man/plot.intsvy.table.Rd | 114 ++---
man/timss.ben.pv.Rd | 112 ++---
man/timss.mean.Rd | 106 ++---
man/timss.mean.pv.Rd | 106 ++---
man/timss.reg.Rd | 100 ++---
man/timss.reg.pv.Rd | 106 ++---
man/timss.rho.Rd | 98 ++---
man/timss.rho.pv.Rd | 102 ++---
man/timss.table.Rd | 118 +++---
man/timssg4.select.merge.Rd | 100 ++---
man/timssg4.var.label.Rd | 70 +--
man/timssg8.select.merge.Rd | 96 ++---
man/timssg8.var.label.Rd | 72 +--
vignettes/piaac.Rmd | 361 +++++++++---------
vignettes/piaac.html | 652 +++++++++++++++++-----------------
vignettes/piaacProficiencyLevels.Rmd |only
vignettes/piaacProficiencyLevels.html |only
94 files changed, 5205 insertions(+), 5182 deletions(-)
Title: Various R programming tools for plotting data
Diff between gplots versions 2.14.2 dated 2014-09-18 and 2.15.0 dated 2014-12-02
Description: Various R programming tools for plotting data
Author: Gregory R. Warnes, Ben Bolker, Lodewijk Bonebakker, Robert
Gentleman, Wolfgang Huber Andy Liaw, Thomas Lumley, Martin
Maechler, Arni Magnusson, Steffen Moeller, Marc Schwartz, Bill
Venables
Maintainer: Gregory R. Warnes
ChangeLog | 24 ++++++++++
DESCRIPTION | 8 +--
MD5 | 22 ++++-----
NAMESPACE | 7 +-
NEWS | 23 +++++++++
R/bandplot.R | 85 ++++++++++++++++++++++++++++++++++--
inst/ChangeLog | 24 ++++++++++
inst/NEWS | 23 +++++++++
inst/doc/venn.pdf |binary
man/bandplot.Rd | 68 ++++++++++++++--------------
tests/heatmap2Test.Rout.save | 2
tests/test_plottingDeepDendrogram.R | 2
12 files changed, 227 insertions(+), 61 deletions(-)
Title: Fitting Seperable Nonlinear Models in Spectroscopy and
Microscopy
Diff between TIMP versions 1.11.0 dated 2014-01-25 and 1.12.0 dated 2014-12-02
Description: TIMP is a problem-solving environment (PSE) for fitting
separable nonlinear models to measurements arising in physics
and chemistry experiments, and has been extensively applied to
time-resolved spectroscopy and FLIM-FRET data.
Author: Katharine M. Mullen, Joris J. Snellenburg, Sergey P. Laptenok, David Nicolaides, Ivo H.M. van Stokkum
Maintainer: Joris J. Snellenburg
DESCRIPTION | 28 -
MD5 | 101 +++---
NAMESPACE | 4
R/calcCirf.R | 7
R/compCoh.R | 25 +
R/compModel.R | 159 ++++-----
R/compOsc.R |only
R/diffFree.R | 44 +-
R/diffRel.R | 96 ++---
R/doClpConstr.R | 34 +-
R/fillK.R | 72 ++--
R/fitModel.R | 176 +++++-----
R/fullKF.R | 34 +-
R/getAnisotropy.R | 38 +-
R/getAutoClp0.R | 40 +-
R/getCoh.R | 133 ++++----
R/getConToPlot.R | 2
R/getConstrained.R | 120 +++----
R/getDiffTheta.R | 170 +++++-----
R/getDiffThetaChange.R | 96 ++---
R/getFixed.R | 128 +++----
R/getGroups.R | 32 -
R/getKinConcen.R | 40 +-
R/getModel.R | 123 +++----
R/getMvec.R | 26 -
R/getOsc.R |only
R/getPar.R | 74 ++--
R/getPrelBetweenDatasets.R | 28 -
R/getResidRet.R | 52 +--
R/getSpecList.R | 106 +++---
R/getThetaCl.R | 94 ++---
R/getXsuper.R | 32 -
R/init.dat.R | 9
R/init.theta.R | 4
R/initModel.R | 28 -
R/initModelClassTest.R |only
R/initOneModel.R | 54 +--
R/irfparF.R | 7
R/rescomp.R | 142 ++++----
R/set_initModelClass_kin.R | 94 ++---
R/set_plotter_kin.R | 2
R/specparF.R | 42 +-
R/weightPsi.R | 48 +-
R/zzz.R | 4
data/denS4.rda |binary
data/denS5.rda |binary
data/donorAcceptorTagged.rda |binary
data/donorTagged.rda |binary
data/mea_IRF.rda |binary
data/target.rda |binary
man/internals.Rd | 7
man/kin-class.Rd | 711 +++++++++++++++++++++----------------------
man/theta-class.Rd | 2
53 files changed, 1672 insertions(+), 1596 deletions(-)
Title: Scalable Robust Estimators with High Breakdown Point for
Incomplete Data
Diff between rrcovNA versions 0.4-4 dated 2013-08-28 and 0.4-7 dated 2014-12-02
Description: Robust Location and Scatter Estimation and Robust
Multivariate Analysis with High Breakdown Point for Incomplete
Data
Author: Valentin Todorov
Maintainer: Valentin Todorov
ChangeLog | 17 +++++++++++++++++
DESCRIPTION | 14 +++++++-------
MD5 | 20 ++++++++++----------
NAMESPACE | 3 +++
R/CovNAClassic.R | 4 ++--
R/CovNARobust.R | 13 ++++---------
R/PcaNA.R | 4 ++--
R/covNAMcd3.R | 10 +++++-----
R/impSeqRob.R | 36 ++++++++++++++++++------------------
tests/tseqimp.R | 4 +++-
tests/tseqimp.Rout.save | 17 +++++------------
11 files changed, 76 insertions(+), 66 deletions(-)
Title: Robust multivariate Methods for High Dimensional Data
Diff between rrcovHD versions 0.2-2 dated 2013-08-28 and 0.2-3 dated 2014-12-02
Description: Robust multivariate methods for high dimensional data:
outlier detection, PCA, PLS, classification
Author: Valentin Todorov
Maintainer: Valentin Todorov
ChangeLog | 15 +++++++++++
DESCRIPTION | 12 ++++-----
MD5 | 43 +++++++++++++++++++-------------
NAMESPACE | 1
R/Outlier.R | 62 -----------------------------------------------
R/OutlierPCOut.R | 24 +++++++++++++++++-
R/RSimca.R | 2 -
R/SPcaGrid.R | 9 ++++--
data/Cars.rda |only
data/soil.rda |only
inst |only
man/CSimca.Rd | 17 ++++++++++++
man/Cars.Rd |only
man/OutlierPCDist.Rd | 2 -
man/OutlierPCOut.Rd | 4 ++-
man/RSimca.Rd | 17 ++++++++++++
man/SPcaGrid.Rd | 18 ++++++-------
man/kibler.Rd | 6 ++--
man/soil.Rd |only
tests/toutlier.R | 5 +++
tests/toutlier.Rout.save | 17 ++++--------
tests/tsimca.R | 5 +++
tests/tsimca.Rout.save | 17 ++++--------
23 files changed, 149 insertions(+), 127 deletions(-)
Title: Estimating multistate models using gamboost()
Diff between gamboostMSM versions 1.1.5 dated 2014-02-11 and 1.1.87 dated 2014-12-02
Description: Provides features to use function gamboost() from package mboost for estimation of multistate models
Author: Holger Reulen
Maintainer: Holger Reulen
gamboostMSM-1.1.5/gamboostMSM/R/dof.R |only
gamboostMSM-1.1.5/gamboostMSM/R/toolbox.R |only
gamboostMSM-1.1.5/gamboostMSM/man/dof.Rd |only
gamboostMSM-1.1.5/gamboostMSM/man/toolbox.Rd |only
gamboostMSM-1.1.87/gamboostMSM/DESCRIPTION | 8
gamboostMSM-1.1.87/gamboostMSM/MD5 | 30 +-
gamboostMSM-1.1.87/gamboostMSM/R/breslow.R | 48 ++--
gamboostMSM-1.1.87/gamboostMSM/R/buildrisksets.R |only
gamboostMSM-1.1.87/gamboostMSM/R/cvriskMSM.R |only
gamboostMSM-1.1.87/gamboostMSM/R/degreesoffreedom.R |only
gamboostMSM-1.1.87/gamboostMSM/R/helpfunctionmultistate1.R |only
gamboostMSM-1.1.87/gamboostMSM/R/helpfunctionmultistate2.R |only
gamboostMSM-1.1.87/gamboostMSM/R/meancentering.R |only
gamboostMSM-1.1.87/gamboostMSM/R/multistate.R | 116 ++++------
gamboostMSM-1.1.87/gamboostMSM/R/plloss.R |only
gamboostMSM-1.1.87/gamboostMSM/R/plotcvriskMSM.R |only
gamboostMSM-1.1.87/gamboostMSM/man/breslow.Rd | 16 -
gamboostMSM-1.1.87/gamboostMSM/man/buildrisksets.Rd |only
gamboostMSM-1.1.87/gamboostMSM/man/cvriskMSM.Rd |only
gamboostMSM-1.1.87/gamboostMSM/man/degreesoffreedom.Rd |only
gamboostMSM-1.1.87/gamboostMSM/man/helpfunctionmultistate1.Rd |only
gamboostMSM-1.1.87/gamboostMSM/man/helpfunctionmultistate2.Rd |only
gamboostMSM-1.1.87/gamboostMSM/man/meancentering.Rd |only
gamboostMSM-1.1.87/gamboostMSM/man/multistate.Rd | 8
gamboostMSM-1.1.87/gamboostMSM/man/plloss.Rd |only
gamboostMSM-1.1.87/gamboostMSM/man/plotcvriskMSM.Rd |only
26 files changed, 118 insertions(+), 108 deletions(-)
Title: Scalable Robust Estimators with High Breakdown Point
Diff between rrcov versions 1.3-4 dated 2013-08-26 and 1.3-8 dated 2014-12-02
Description: Robust Location and Scatter Estimation and Robust
Multivariate Analysis with High Breakdown Point.
Author: Valentin Todorov
Maintainer: Valentin Todorov
rrcov-1.3-4/rrcov/R/rrcov.control.R |only
rrcov-1.3-4/rrcov/man/covMest3.Rd |only
rrcov-1.3-4/rrcov/man/rrcov.control.Rd |only
rrcov-1.3-4/rrcov/tests/tmest.R |only
rrcov-1.3-4/rrcov/tests/tmest.Rout.save |only
rrcov-1.3-8/rrcov/ChangeLog | 66 -
rrcov-1.3-8/rrcov/DESCRIPTION | 14
rrcov-1.3-8/rrcov/MD5 | 122 -
rrcov-1.3-8/rrcov/NAMESPACE | 9
rrcov-1.3-8/rrcov/R/AllClasses.R | 11
rrcov-1.3-8/rrcov/R/Cov.R | 2
rrcov-1.3-8/rrcov/R/CovClassic.R | 8
rrcov-1.3-8/rrcov/R/CovControl.R | 4
rrcov-1.3-8/rrcov/R/CovMcd.R | 78 -
rrcov-1.3-8/rrcov/R/CovMve.R | 4
rrcov-1.3-8/rrcov/R/CovOgk.R | 46
rrcov-1.3-8/rrcov/R/CovRobust.R | 2
rrcov-1.3-8/rrcov/R/CovSde.R | 4
rrcov-1.3-8/rrcov/R/CovSest.R | 25
rrcov-1.3-8/rrcov/R/Pca.R | 79 -
rrcov-1.3-8/rrcov/R/PcaClassic.R | 11
rrcov-1.3-8/rrcov/R/PcaHubert.R | 61
rrcov-1.3-8/rrcov/R/covMest3.R | 3
rrcov-1.3-8/rrcov/R/dets.R |only
rrcov-1.3-8/rrcov/R/plot-utils.R | 5
rrcov-1.3-8/rrcov/R/utils.R | 53
rrcov-1.3-8/rrcov/build |only
rrcov-1.3-8/rrcov/inst/doc/rrcov.R | 4
rrcov-1.3-8/rrcov/inst/doc/rrcov.Rnw | 1
rrcov-1.3-8/rrcov/inst/doc/rrcov.pdf |binary
rrcov-1.3-8/rrcov/man/Cov-class.Rd | 1
rrcov-1.3-8/rrcov/man/CovControlMMest.Rd | 11
rrcov-1.3-8/rrcov/man/CovControlMcd-class.Rd | 18
rrcov-1.3-8/rrcov/man/CovControlMcd.Rd | 21
rrcov-1.3-8/rrcov/man/CovMMest.Rd | 3
rrcov-1.3-8/rrcov/man/CovMcd.Rd | 43
rrcov-1.3-8/rrcov/man/CovSde.Rd | 13
rrcov-1.3-8/rrcov/man/CovSest-class.Rd | 5
rrcov-1.3-8/rrcov/man/CovSest.Rd | 42
rrcov-1.3-8/rrcov/man/Pca-class.Rd | 1
rrcov-1.3-8/rrcov/man/PcaHubert.Rd | 4
rrcov-1.3-8/rrcov/man/covMest-deprecated.Rd |only
rrcov-1.3-8/rrcov/man/rrcov-utils.Rd | 16
rrcov-1.3-8/rrcov/src/ds11.f | 2
rrcov-1.3-8/rrcov/src/sest.c | 84 +
rrcov-1.3-8/rrcov/tests/thubert.R | 33
rrcov-1.3-8/rrcov/tests/thubert.Rout.save | 644 ++++++++--
rrcov-1.3-8/rrcov/tests/tlda.R | 5
rrcov-1.3-8/rrcov/tests/tlda.Rout.save | 12
rrcov-1.3-8/rrcov/tests/tldapp.R | 5
rrcov-1.3-8/rrcov/tests/tldapp.Rout.save | 12
rrcov-1.3-8/rrcov/tests/tmcd4.R | 137 +-
rrcov-1.3-8/rrcov/tests/tmcd4.Rout.save | 1730 +++++++++++++++++++++++++--
rrcov-1.3-8/rrcov/tests/tmest4.R | 25
rrcov-1.3-8/rrcov/tests/tmest4.Rout.save | 32
rrcov-1.3-8/rrcov/tests/tmve4.R | 64
rrcov-1.3-8/rrcov/tests/tmve4.Rout.save | 71 -
rrcov-1.3-8/rrcov/tests/togk4.R | 17
rrcov-1.3-8/rrcov/tests/togk4.Rout.save | 24
rrcov-1.3-8/rrcov/tests/tqda.R | 5
rrcov-1.3-8/rrcov/tests/tqda.Rout.save | 12
rrcov-1.3-8/rrcov/tests/tsde.R | 15
rrcov-1.3-8/rrcov/tests/tsde.Rout.save | 22
rrcov-1.3-8/rrcov/tests/tsest.R | 9
rrcov-1.3-8/rrcov/tests/tsest.Rout.save | 603 ++++++++-
rrcov-1.3-8/rrcov/vignettes/rrcov.Rnw | 1
66 files changed, 3630 insertions(+), 724 deletions(-)
Title: Farewell’s Linear Increments Model
Diff between FLIM versions 1.1 dated 2014-05-19 and 1.2 dated 2014-12-02
Description: FLIM fits linear models for the observed increments in a longitudinal dataset, and imputes missing values according to the models.
Author: Rune Hoff with contributions from Jon Michael Gran and Daniel Farewell
Maintainer: Rune Hoff
DESCRIPTION | 8 ++++----
MD5 | 20 +++++++++++---------
R/SetImputationTimes.R | 2 +-
R/flim.R | 48 +++++++++++++++++++++++++++++++++++++++++++++---
R/flimList.R | 1 +
R/flimMean.R | 3 ++-
R/plot.flim.R | 3 ++-
R/print.flimList.R | 4 ++--
data/CD4sim.rda |only
data/panss.rda |binary
man/CD4sim.Rd |only
man/flim.Rd | 12 +++++++++++-
12 files changed, 79 insertions(+), 22 deletions(-)
More information about choroplethrAdmin1 at CRAN
Permanent link
Title: Diagnostics plots for Bicluster Data
Diff between BcDiag versions 1.0.5 dated 2014-10-17 and 1.0.6 dated 2014-12-02
Description: This package provides Diagnostic tools based on two way
anova and median polish residual plots for Bicluster output
obtained from packages; "biclust" by Kaiser et al.(2008),"isa2"
by Csardi et al. (2010) and "fabia" by Hochreiter et al.
(2010). Moreover, It provides visualization tools for bicluster
output and corresponding non bicluster rows or columns
outcomes. It has also extended the idea of Kaiser et al.(2008)
which is, extracting bicluster output in a text format, by
adding by adding two bicluster methods from fabia and isa2 r
packages.
Author: Aregay Mengsteab, Martin Otava, Tatsiana Khamiakova, Ewoud De Troyer
Maintainer: Ewoud De Troyer
DESCRIPTION | 12 ++++++------
MD5 | 24 ++++++++++++------------
R/anomedOnlybic.R | 4 ++--
R/exploreBic.R | 4 ++--
R/exploreOnlybic.R | 6 +++---
R/profileBic.R | 10 +++++-----
R/support.R | 13 ++++++++++++-
R/writeBic.R | 35 +++++++++++++++++++++++++++++------
man/anomedOnlybic.Rd | 4 +++-
man/exploreBic.Rd | 4 +++-
man/exploreOnlybic.Rd | 4 +++-
man/profileBic.Rd | 8 +++++---
man/writeBic.Rd | 8 +++++---
13 files changed, 90 insertions(+), 46 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-03-30 0.8-1
2012-02-06 0.8-0
2011-09-24 0.7-9-1
2011-09-21 0.7-9
2011-03-04 0.4-4
2010-08-18 0.4-3
2010-07-02 0.4-2
Title: R Interface to the QuantLib Library
Diff between RQuantLib versions 0.3.12 dated 2014-03-09 and 0.4.0 dated 2014-12-02
Description: The RQuantLib package makes parts of QuantLib accessible from R
The QuantLib project aims to provide a comprehensive software framework for
quantitative finance. The goal is to provide a standard open source library
for quantitative analysis, modeling, trading, and risk management of
financial assets.
Author: Dirk Eddelbuettel, Khanh Nguyen (during 2009-2010)
Maintainer: Dirk Eddelbuettel
RQuantLib-0.3.12/RQuantLib/configure.in |only
RQuantLib-0.3.12/RQuantLib/inst/Boost-License.txt |only
RQuantLib-0.3.12/RQuantLib/inst/QuantLib-License.txt |only
RQuantLib-0.3.12/RQuantLib/inst/include/rquantlib.h |only
RQuantLib-0.4.0/RQuantLib/ChangeLog | 374 +
RQuantLib-0.4.0/RQuantLib/DESCRIPTION | 33
RQuantLib-0.4.0/RQuantLib/MD5 | 135
RQuantLib-0.4.0/RQuantLib/NAMESPACE | 12
RQuantLib-0.4.0/RQuantLib/R/RcppExports.R |only
RQuantLib-0.4.0/RQuantLib/R/arrays.R | 138
RQuantLib-0.4.0/RQuantLib/R/asian.R | 50
RQuantLib-0.4.0/RQuantLib/R/bermudan.R | 65
RQuantLib-0.4.0/RQuantLib/R/bond.R | 679 +--
RQuantLib-0.4.0/RQuantLib/R/calendars.R | 227 -
RQuantLib-0.4.0/RQuantLib/R/dayCounter.R | 29
RQuantLib-0.4.0/RQuantLib/R/discount.R | 70
RQuantLib-0.4.0/RQuantLib/R/hullWhiteCalibration.R | 75
RQuantLib-0.4.0/RQuantLib/R/implied.R | 160
RQuantLib-0.4.0/RQuantLib/R/inline.R | 7
RQuantLib-0.4.0/RQuantLib/R/option.R | 85
RQuantLib-0.4.0/RQuantLib/R/schedule.R |only
RQuantLib-0.4.0/RQuantLib/R/unitTest.R |only
RQuantLib-0.4.0/RQuantLib/README.md | 2
RQuantLib-0.4.0/RQuantLib/cleanup | 2
RQuantLib-0.4.0/RQuantLib/configure | 28
RQuantLib-0.4.0/RQuantLib/configure.ac |only
RQuantLib-0.4.0/RQuantLib/demo/OptionSurfaces.R | 6
RQuantLib-0.4.0/RQuantLib/inst/Boost_LICENSE.TXT |only
RQuantLib-0.4.0/RQuantLib/inst/NEWS.Rd |only
RQuantLib-0.4.0/RQuantLib/inst/QuantLib_LICENSE.TXT |only
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RQuantLib-0.4.0/RQuantLib/inst/include/RQuantLib_RcppExports.h |only
RQuantLib-0.4.0/RQuantLib/inst/include/rquantlib_impl.h |only
RQuantLib-0.4.0/RQuantLib/inst/include/rquantlib_internal.h |only
RQuantLib-0.4.0/RQuantLib/inst/include/rquantlib_wrappers.h |only
RQuantLib-0.4.0/RQuantLib/inst/unitTests/cpp |only
RQuantLib-0.4.0/RQuantLib/inst/unitTests/runit.calendar.R | 4
RQuantLib-0.4.0/RQuantLib/inst/unitTests/runit.dates.R |only
RQuantLib-0.4.0/RQuantLib/inst/unitTests/runit.options.R | 75
RQuantLib-0.4.0/RQuantLib/man/AmericanOption.Rd | 1
RQuantLib-0.4.0/RQuantLib/man/AmericanOptionImpliedVolatility.Rd | 9
RQuantLib-0.4.0/RQuantLib/man/AsianOption.Rd | 13
RQuantLib-0.4.0/RQuantLib/man/BarrierOption.Rd | 3
RQuantLib-0.4.0/RQuantLib/man/BinaryOption.Rd | 1
RQuantLib-0.4.0/RQuantLib/man/BinaryOptionImpliedVolatility.Rd | 7
RQuantLib-0.4.0/RQuantLib/man/Bond.Rd | 64
RQuantLib-0.4.0/RQuantLib/man/BondUtilities.Rd | 5
RQuantLib-0.4.0/RQuantLib/man/Calendars.Rd | 40
RQuantLib-0.4.0/RQuantLib/man/CallableBond.Rd | 2
RQuantLib-0.4.0/RQuantLib/man/ConvertibleBond.Rd | 6
RQuantLib-0.4.0/RQuantLib/man/DiscountCurve.Rd | 25
RQuantLib-0.4.0/RQuantLib/man/Enum.Rd | 17
RQuantLib-0.4.0/RQuantLib/man/EuropeanOption.Rd | 1
RQuantLib-0.4.0/RQuantLib/man/EuropeanOptionImpliedVolatility.Rd | 9
RQuantLib-0.4.0/RQuantLib/man/FixedRateBond.Rd | 221 -
RQuantLib-0.4.0/RQuantLib/man/FloatingRateBond.Rd | 7
RQuantLib-0.4.0/RQuantLib/man/Schedule.Rd |only
RQuantLib-0.4.0/RQuantLib/man/ZeroCouponBond.Rd | 4
RQuantLib-0.4.0/RQuantLib/src/Makevars.in | 5
RQuantLib-0.4.0/RQuantLib/src/Makevars.win | 4
RQuantLib-0.4.0/RQuantLib/src/RcppExports.cpp |only
RQuantLib-0.4.0/RQuantLib/src/asian.cpp | 247 -
RQuantLib-0.4.0/RQuantLib/src/barrier_binary.cpp | 465 +-
RQuantLib-0.4.0/RQuantLib/src/bermudan.cpp | 522 +-
RQuantLib-0.4.0/RQuantLib/src/bonds.cpp | 1969 ++++------
RQuantLib-0.4.0/RQuantLib/src/calendars.cpp | 488 +-
RQuantLib-0.4.0/RQuantLib/src/curves.cpp | 274 -
RQuantLib-0.4.0/RQuantLib/src/dates.cpp |only
RQuantLib-0.4.0/RQuantLib/src/daycounter.cpp | 122
RQuantLib-0.4.0/RQuantLib/src/discount.cpp | 258 -
RQuantLib-0.4.0/RQuantLib/src/hullwhite.cpp | 320 -
RQuantLib-0.4.0/RQuantLib/src/implieds.cpp | 216 -
RQuantLib-0.4.0/RQuantLib/src/modules.cpp | 23
RQuantLib-0.4.0/RQuantLib/src/rquantlib.h |only
RQuantLib-0.4.0/RQuantLib/src/schedule.cpp |only
RQuantLib-0.4.0/RQuantLib/src/utils.cpp | 258 -
RQuantLib-0.4.0/RQuantLib/src/vanilla.cpp | 352 -
RQuantLib-0.4.0/RQuantLib/src/zero.cpp | 330 -
RQuantLib-0.4.0/RQuantLib/tests/RQuantlib.R | 59
RQuantLib-0.4.0/RQuantLib/tests/RQuantlib.Rout.save | 116
80 files changed, 4387 insertions(+), 4332 deletions(-)
Title: Network-based data visualization
Diff between qgraph versions 1.2.5 dated 2014-05-22 and 1.3 dated 2014-12-02
Description: The qgraph package can be used to visualize data as networks as well as provides an interface for visualizing weighted graphical models.
Author: Sacha Epskamp, Giulio Costantini, Angelique O. J. Cramer, Lourens J. Waldorp, Verena D. Schmittmann and Denny Borsboom
Maintainer: Sacha Epskamp
DESCRIPTION | 12
MD5 | 61 -
NAMESPACE | 19
NEWS | 779 ++++++++-------
R/Cent2EdgeNode.R | 14
R/EBICgraph.R |only
R/FDRnetwork.R |only
R/Jaccard.R |only
R/PLOT.R | 2372 ++++++++++++++++++++++++------------------------
R/centrality.R | 1
R/centralityFunctions.R | 1
R/centralityPlot.R | 24
R/centralityTable.R | 34
R/clusteringPlot.R | 23
R/clusteringTable.R | 29
R/cor_auto.R | 27
R/drawNode.R | 18
R/findGraph.R |only
R/glasso_methods.R | 97 -
R/logGaus.R |only
R/qgraph.R | 464 +++++++--
R/qgraph.panel.R | 117 +-
R/qgraphAnnotate.R |only
R/qgraphD3.R |only
R/qgraph_growth.R | 15
R/qgraph_loadings.R | 639 ++++++------
R/qgraph_svg.R | 358 +++----
R/toJSONarray.R |only
README | 8
man/CentAndClusfuns.Rd | 22
man/EBICglasso.Rd | 21
man/FDRnetwork.Rd |only
man/cor_auto.Rd | 14
man/findGraph.Rd |only
man/qgraph.Rd | 63 -
man/qgraph.animate.Rd | 4
man/qgraphAnnotate.Rd |only
37 files changed, 2846 insertions(+), 2390 deletions(-)
Title: Geostatistical Modelling of Spatially Referenced Prevalence Data
Diff between PrevMap versions 1.1 dated 2014-11-25 and 1.1.1 dated 2014-12-02
Description: The PrevMap package provides functions for both likelihood-based
and Bayesian analysis of spatially referenced prevalence data. 'PrevMap' is
also an extension of the 'geoR' package which should be installed first
together with the 'maxLik', 'raster' and 'pdist' packages.
Author: Emanuele Giorgi, Peter J. Diggle
Maintainer: Emanuele Giorgi
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/foo.R | 20 +++++++++++++++-----
man/loglik.ci.Rd | 6 +++---
man/shape.matern.Rd | 2 +-
5 files changed, 27 insertions(+), 17 deletions(-)
Title: Biological Sequences Retrieval and Analysis
Diff between seqinr versions 3.0-9 dated 2014-10-31 and 3.1-2 dated 2014-12-02
Description: Exploratory data analysis and data visualization
for biological sequence (DNA and protein) data. Includes also
utilities for sequence data management under the ACNUC system.
Author: Delphine Charif and Jean R. Lobry and Anamaria Necsulea and Leonor Palmeira and Simon Penel and Guy Perriere
Maintainer: Simon Penel
seqinr-3.0-9/seqinr/inst/sequences/bb.fasta |only
seqinr-3.0-9/seqinr/inst/sequences/ct.bfa |only
seqinr-3.0-9/seqinr/inst/sequences/ct.coord |only
seqinr-3.0-9/seqinr/inst/sequences/ct.fasta |only
seqinr-3.0-9/seqinr/inst/sequences/ct.gbk |only
seqinr-3.0-9/seqinr/inst/sequences/ct.predict |only
seqinr-3.0-9/seqinr/inst/sequences/goldtable15Dec07.txt |only
seqinr-3.0-9/seqinr/src/Rconnections.h |only
seqinr-3.0-9/seqinr/src/adler32.c |only
seqinr-3.0-9/seqinr/src/compress.c |only
seqinr-3.0-9/seqinr/src/crc32.c |only
seqinr-3.0-9/seqinr/src/crc32.h |only
seqinr-3.0-9/seqinr/src/deflate.c |only
seqinr-3.0-9/seqinr/src/deflate.h |only
seqinr-3.0-9/seqinr/src/gzio.c |only
seqinr-3.0-9/seqinr/src/infback.c |only
seqinr-3.0-9/seqinr/src/inffast.c |only
seqinr-3.0-9/seqinr/src/inffast.h |only
seqinr-3.0-9/seqinr/src/inffixed.h |only
seqinr-3.0-9/seqinr/src/inflate.c |only
seqinr-3.0-9/seqinr/src/inflate.h |only
seqinr-3.0-9/seqinr/src/inftrees.c |only
seqinr-3.0-9/seqinr/src/inftrees.h |only
seqinr-3.0-9/seqinr/src/trees.c |only
seqinr-3.0-9/seqinr/src/trees.h |only
seqinr-3.0-9/seqinr/src/uncompr.c |only
seqinr-3.0-9/seqinr/src/zconf.h |only
seqinr-3.0-9/seqinr/src/zlib.h |only
seqinr-3.0-9/seqinr/src/zutil.c |only
seqinr-3.0-9/seqinr/src/zutil.h |only
seqinr-3.1-2/seqinr/DESCRIPTION | 23 --
seqinr-3.1-2/seqinr/MD5 | 181 ++++++----------
seqinr-3.1-2/seqinr/R/autosocket.R | 2
seqinr-3.1-2/seqinr/R/comp.R | 6
seqinr-3.1-2/seqinr/R/db.growth.R | 6
seqinr-3.1-2/seqinr/R/dia.bactgensize.R | 4
seqinr-3.1-2/seqinr/R/dist.alignment.R | 9
seqinr-3.1-2/seqinr/R/gbk2g2.R | 2
seqinr-3.1-2/seqinr/R/oriloc.R | 4
seqinr-3.1-2/seqinr/R/plot.SeqAcnucWeb.R | 20 -
seqinr-3.1-2/seqinr/R/query.r | 15 -
seqinr-3.1-2/seqinr/R/read.fasta.R | 2
seqinr-3.1-2/seqinr/R/rearranged.oriloc.R | 4
seqinr-3.1-2/seqinr/R/write.fasta.R | 16 -
seqinr-3.1-2/seqinr/data/AnoukResult.RData |binary
seqinr-3.1-2/seqinr/data/ECH.RData |binary
seqinr-3.1-2/seqinr/data/EXP.RData |binary
seqinr-3.1-2/seqinr/data/JLO.RData |binary
seqinr-3.1-2/seqinr/data/SEQINR.UTIL.RData |only
seqinr-3.1-2/seqinr/data/aacost.RData |binary
seqinr-3.1-2/seqinr/data/aaindex.RData |binary
seqinr-3.1-2/seqinr/data/caitab.RData |binary
seqinr-3.1-2/seqinr/data/chargaff.RData |binary
seqinr-3.1-2/seqinr/data/clustal.RData |binary
seqinr-3.1-2/seqinr/data/datalist | 1
seqinr-3.1-2/seqinr/data/dinucl.RData |binary
seqinr-3.1-2/seqinr/data/ec999.RData |binary
seqinr-3.1-2/seqinr/data/fasta.RData |binary
seqinr-3.1-2/seqinr/data/gs500liz.RData |binary
seqinr-3.1-2/seqinr/data/identifiler.RData |binary
seqinr-3.1-2/seqinr/data/m16j.RData |binary
seqinr-3.1-2/seqinr/data/mase.RData |binary
seqinr-3.1-2/seqinr/data/msf.RData |binary
seqinr-3.1-2/seqinr/data/pK.RData |binary
seqinr-3.1-2/seqinr/data/phylip.RData |binary
seqinr-3.1-2/seqinr/data/prochlo.RData |binary
seqinr-3.1-2/seqinr/data/revaligntest.RData |binary
seqinr-3.1-2/seqinr/data/sysdata.rda |binary
seqinr-3.1-2/seqinr/data/toyaa.RData |binary
seqinr-3.1-2/seqinr/data/toycodon.RData |binary
seqinr-3.1-2/seqinr/data/waterabs.RData |binary
seqinr-3.1-2/seqinr/inst/CITATION | 4
seqinr-3.1-2/seqinr/man/SeqAcnucWeb.Rd | 2
seqinr-3.1-2/seqinr/man/countsubseqs.Rd | 2
seqinr-3.1-2/seqinr/man/dia.bactgensize.Rd | 2
seqinr-3.1-2/seqinr/man/dist.alignment.Rd | 3
seqinr-3.1-2/seqinr/man/dotchart.uco.Rd | 2
seqinr-3.1-2/seqinr/man/draw.oriloc.Rd | 3
seqinr-3.1-2/seqinr/man/draw.rearranged.oriloc.Rd | 7
seqinr-3.1-2/seqinr/man/extract.breakpoints.Rd | 2
seqinr-3.1-2/seqinr/man/extractseqs.Rd | 2
seqinr-3.1-2/seqinr/man/gb2fasta.Rd | 2
seqinr-3.1-2/seqinr/man/gbk2g2.Rd | 12 -
seqinr-3.1-2/seqinr/man/get.db.growth.Rd | 2
seqinr-3.1-2/seqinr/man/getAnnot.Rd | 2
seqinr-3.1-2/seqinr/man/getKeyword.Rd | 2
seqinr-3.1-2/seqinr/man/getLength.Rd | 2
seqinr-3.1-2/seqinr/man/getLocation.Rd | 2
seqinr-3.1-2/seqinr/man/getName.Rd | 2
seqinr-3.1-2/seqinr/man/getSequence.Rd | 2
seqinr-3.1-2/seqinr/man/getTrans.Rd | 2
seqinr-3.1-2/seqinr/man/modifylist.Rd | 8
seqinr-3.1-2/seqinr/man/oriloc.Rd | 11
seqinr-3.1-2/seqinr/man/plot.SeqAcnucWeb.Rd | 6
seqinr-3.1-2/seqinr/man/prepgatannots.Rd | 2
seqinr-3.1-2/seqinr/man/print.SeqAcnucWeb.Rd | 2
seqinr-3.1-2/seqinr/man/print.qaw.Rd | 2
seqinr-3.1-2/seqinr/man/query.Rd | 2
seqinr-3.1-2/seqinr/man/read.fasta.Rd | 8
seqinr-3.1-2/seqinr/man/rearranged.oriloc.Rd | 12 -
seqinr-3.1-2/seqinr/man/translate.Rd | 2
seqinr-3.1-2/seqinr/man/write.fasta.Rd | 6
seqinr-3.1-2/seqinr/src/Makevars | 1
seqinr-3.1-2/seqinr/src/Makevars.win | 2
seqinr-3.1-2/seqinr/src/alignment.c | 36 ++-
seqinr-3.1-2/seqinr/src/getzlibsock.c | 6
seqinr-3.1-2/seqinr/src/kaks.c | 4
107 files changed, 240 insertions(+), 224 deletions(-)
Title: VAR modelling: estimation, testing, and prediction
Diff between VAR.etp versions 0.6 dated 2014-11-09 and 0.7 dated 2014-12-02
Description: Estimation, Hypothesis Testing, Prediction for Stationary Vector Autoregressive Models
Author: Jae. H. Kim
Maintainer: Jae H. Kim
DESCRIPTION | 8 ++++----
MD5 | 18 +++++++++---------
R/ARM2.Fore.R | 2 +-
R/ARM3.Fore.R | 2 +-
R/VAR.Fore.R | 2 +-
R/VAR.ForeB.R | 2 +-
R/VAR.Rmat.R | 2 +-
man/VAR.etp-package.Rd | 10 ++++++----
man/VAR.irf.Rd | 4 ++--
man/data1.Rd | 2 +-
10 files changed, 27 insertions(+), 25 deletions(-)
Title: TURF Analysis for R
Diff between turfR versions 0.8-4 dated 2014-05-12 and 0.8-7 dated 2014-12-02
Description: Package for analyzing TURF (Total Unduplicated Reach and Frequency) data in R.
No looping in TURF algorithm results in fast processing times. Allows for individual-level
weights, depth specification, and user-truncated combination set(s). Allows user to substitute
Monte Carlo simulated combination set(s) after set(s) exceed a user-specified limit.
Author: Jack Horne [aut, cre]
Maintainer: Jack Horne
turfR-0.8-4/turfR/R/turfR_0.8-4.R |only
turfR-0.8-7/turfR/DESCRIPTION | 10 +++++-----
turfR-0.8-7/turfR/MD5 | 4 ++--
turfR-0.8-7/turfR/R/turfR_0.8-7.R |only
4 files changed, 7 insertions(+), 7 deletions(-)
Title: Kernel-based Regression Models
Diff between krm versions 13.11-03 dated 2013-11-04 and 2014.12-1 dated 2014-12-02
Description: Testing methods for kernel-based regression models.
Author: Youyi Fong
Maintainer: Youyi Fong
krm-13.11-03/krm/R/fromKrisz.R |only
krm-13.11-03/krm/R/youtilcopy.R |only
krm-13.11-03/krm/src/fromKrisz.c |only
krm-2014.12-1/krm/DESCRIPTION | 16 --
krm-2014.12-1/krm/MD5 | 39 ++---
krm-2014.12-1/krm/NAMESPACE | 3
krm-2014.12-1/krm/R/getSeqKernel.r | 37 +++-
krm-2014.12-1/krm/R/krm.most.R | 122 +++++++---------
krm-2014.12-1/krm/R/sim.liu.R | 4
krm-2014.12-1/krm/inst/unitTests/runit.getSeqKernel.R | 32 ++--
krm-2014.12-1/krm/inst/unitTests/runit.krm.most.R | 24 +--
krm-2014.12-1/krm/inst/unitTests/runit.krm.score.test.R | 11 -
krm-2014.12-1/krm/man/getSeqKernel.Rd | 10 +
krm-2014.12-1/krm/man/krm.Rd | 6
krm-2014.12-1/krm/man/krm.most.Rd | 60 +++++--
krm-2014.12-1/krm/man/krm.score.test.Rd | 4
krm-2014.12-1/krm/src/MI_kernel.cpp | 21 ++
krm-2014.12-1/krm/src/Makevars.win | 1
krm-2014.12-1/krm/src/ProteinSequence.cpp | 43 +++--
krm-2014.12-1/krm/src/ProteinSequence.h | 2
krm-2014.12-1/krm/src/RandomPlus.h | 2
krm-2014.12-1/krm/src/U.h | 5
22 files changed, 261 insertions(+), 181 deletions(-)
Title: Bayesian Additive Regression Trees
Diff between bartMachine versions 1.0.4 dated 2014-09-05 and 1.1.1 dated 2014-12-02
Description: An advanced implementation of Bayesian Additive Regression Trees with expanded features for data analysis and visualization.
Author: Adam Kapelner and Justin Bleich (R package), see COPYRIGHTS file for the authors of the java libraries
Maintainer: Adam Kapelner
bartMachine-1.0.4/bartMachine/inst/doc/bartMachine_vignette.Rnw |only
bartMachine-1.0.4/bartMachine/inst/doc/bartMachine_vignette.pdf |only
bartMachine-1.0.4/bartMachine/man/set_bart_machine_memory.Rd |only
bartMachine-1.0.4/bartMachine/man/var_selection_by_permute_response_cv.Rd |only
bartMachine-1.0.4/bartMachine/man/var_selection_by_permute_response_three_methods.Rd |only
bartMachine-1.0.4/bartMachine/vignettes/bartMachine_vignette.Rnw |only
bartMachine-1.1.1/bartMachine/CHANGELOG | 10
bartMachine-1.1.1/bartMachine/DESCRIPTION | 10
bartMachine-1.1.1/bartMachine/MD5 | 133 +++++-----
bartMachine-1.1.1/bartMachine/NAMESPACE | 8
bartMachine-1.1.1/bartMachine/R/bartMachine.R | 61 ++--
bartMachine-1.1.1/bartMachine/R/bart_package_builders.R | 68 +++--
bartMachine-1.1.1/bartMachine/R/bart_package_cross_validation.R | 66 +++-
bartMachine-1.1.1/bartMachine/R/bart_package_f_tests.R | 4
bartMachine-1.1.1/bartMachine/R/bart_package_inits.R | 45 ---
bartMachine-1.1.1/bartMachine/R/bart_package_plots.R | 77 +----
bartMachine-1.1.1/bartMachine/R/bart_package_predicts.R | 41 +--
bartMachine-1.1.1/bartMachine/R/bart_package_summaries.R | 5
bartMachine-1.1.1/bartMachine/R/bart_package_variable_selection.R | 36 +-
bartMachine-1.1.1/bartMachine/R/zzz.R | 4
bartMachine-1.1.1/bartMachine/build/vignette.rds |binary
bartMachine-1.1.1/bartMachine/data/automobile.RData |binary
bartMachine-1.1.1/bartMachine/inst/CITATION | 4
bartMachine-1.1.1/bartMachine/inst/doc/bartMachine.Rnw |only
bartMachine-1.1.1/bartMachine/inst/doc/bartMachine.pdf |only
bartMachine-1.1.1/bartMachine/inst/java/bart_java.jar |binary
bartMachine-1.1.1/bartMachine/java/AlgorithmTesting/DataAnalysis.java | 42 ++-
bartMachine-1.1.1/bartMachine/java/README | 2
bartMachine-1.1.1/bartMachine/java/bartMachine/Classifier.java | 3
bartMachine-1.1.1/bartMachine/java/bartMachine/TreeArrayIllustration.java | 4
bartMachine-1.1.1/bartMachine/java/bartMachine/TreeIllustration.java | 4
bartMachine-1.1.1/bartMachine/java/bartMachine/bartMachineClassification.java | 4
bartMachine-1.1.1/bartMachine/java/bartMachine/bartMachineClassificationMultThread.java | 4
bartMachine-1.1.1/bartMachine/java/bartMachine/bartMachineRegression.java | 4
bartMachine-1.1.1/bartMachine/java/bartMachine/bartMachineRegressionMultThread.java | 29 --
bartMachine-1.1.1/bartMachine/java/bartMachine/bartMachineTreeNode.java | 9
bartMachine-1.1.1/bartMachine/java/bartMachine/bartMachine_a_base.java | 4
bartMachine-1.1.1/bartMachine/java/bartMachine/bartMachine_b_hyperparams.java | 8
bartMachine-1.1.1/bartMachine/java/bartMachine/bartMachine_c_debug.java | 4
bartMachine-1.1.1/bartMachine/java/bartMachine/bartMachine_d_init.java | 8
bartMachine-1.1.1/bartMachine/java/bartMachine/bartMachine_e_gibbs_base.java | 4
bartMachine-1.1.1/bartMachine/java/bartMachine/bartMachine_f_gibbs_internal.java | 4
bartMachine-1.1.1/bartMachine/java/bartMachine/bartMachine_g_mh.java | 3
bartMachine-1.1.1/bartMachine/java/bartMachine/bartMachine_h_eval.java | 3
bartMachine-1.1.1/bartMachine/java/bartMachine/bartMachine_i_prior_cov_spec.java | 4
bartMachine-1.1.1/bartMachine/man/bartMachine.Rd | 27 --
bartMachine-1.1.1/bartMachine/man/bartMachineCV.Rd | 5
bartMachine-1.1.1/bartMachine/man/bart_machine_get_posterior.Rd | 6
bartMachine-1.1.1/bartMachine/man/bart_predict_for_test_data.Rd | 9
bartMachine-1.1.1/bartMachine/man/calc_credible_intervals.Rd | 3
bartMachine-1.1.1/bartMachine/man/calc_prediction_intervals.Rd | 3
bartMachine-1.1.1/bartMachine/man/check_bart_error_assumptions.Rd | 3
bartMachine-1.1.1/bartMachine/man/cov_importance_test.Rd | 3
bartMachine-1.1.1/bartMachine/man/destroy_bart_machine.Rd | 30 --
bartMachine-1.1.1/bartMachine/man/get_sigsqs.Rd | 3
bartMachine-1.1.1/bartMachine/man/get_var_counts_over_chain.Rd | 3
bartMachine-1.1.1/bartMachine/man/get_var_props_over_chain.Rd | 3
bartMachine-1.1.1/bartMachine/man/interaction_investigator.Rd | 3
bartMachine-1.1.1/bartMachine/man/investigate_var_importance.Rd | 3
bartMachine-1.1.1/bartMachine/man/k_fold_cv.Rd | 14 -
bartMachine-1.1.1/bartMachine/man/pd_plot.Rd | 6
bartMachine-1.1.1/bartMachine/man/plot_convergence_diagnostics.Rd | 3
bartMachine-1.1.1/bartMachine/man/plot_y_vs_yhat.Rd | 3
bartMachine-1.1.1/bartMachine/man/predict.Rd | 6
bartMachine-1.1.1/bartMachine/man/print.Rd | 3
bartMachine-1.1.1/bartMachine/man/rmse_by_num_trees.Rd | 8
bartMachine-1.1.1/bartMachine/man/summary.Rd | 3
bartMachine-1.1.1/bartMachine/man/var_selection_by_permute.Rd |only
bartMachine-1.1.1/bartMachine/man/var_selection_by_permute_cv.Rd |only
bartMachine-1.1.1/bartMachine/vignettes/bartMachine.Rnw |only
bartMachine-1.1.1/bartMachine/vignettes/bart_package_paper.bib | 13
bartMachine-1.1.1/bartMachine/vignettes/images/convergence_diagnostics_2.pdf |only
bartMachine-1.1.1/bartMachine/vignettes/images/rmse_num_trees_2.pdf |only
bartMachine-1.1.1/bartMachine/vignettes/images/speed_full2.pdf |only
bartMachine-1.1.1/bartMachine/vignettes/images/speed_zoomed2.pdf |only
75 files changed, 427 insertions(+), 455 deletions(-)