Title: Variance dispersion graphs and Fraction of design space plots
for response surface designs
Diff between Vdgraph versions 2.2-1 dated 2014-08-15 and 2.2-2 dated 2014-12-12
Description: Uses a modification of the published FORTRAN code in "A Computer Program for Generating Variance Dispersion Graphs" by G. Vining, Journal of Quality Technology, Vol. 25 No. 1 January 1993, to produce variance dispersion graphs. Also produces fraction of design space plots, and contains data frames for several minimal run response surface designs.
Author: John Lawson
Maintainer: John Lawson
DESCRIPTION | 20 ++++++++++----------
MD5 | 30 +++++++++++++++---------------
data/D310.rda |binary
data/D311A.rda |binary
data/D311B.rda |binary
data/D416A.rda |binary
data/D416B.rda |binary
data/D416C.rda |binary
data/D628A.rda |binary
data/Hex2.rda |binary
data/SCDDL5.rda |binary
data/SCDH2.rda |binary
data/SCDH3.rda |binary
data/SCDH4.rda |binary
data/SCDH5.rda |binary
data/SCDH6.rda |binary
16 files changed, 25 insertions(+), 25 deletions(-)
Title: Tools for analyzing QTL experiments
Diff between qtl versions 1.34-17 dated 2014-10-30 and 1.35-1 dated 2014-12-12
Description: Analysis of experimental crosses to identify genes
(called quantitative trait loci, QTLs) contributing to variation in
quantitative traits.
Author: Karl W Broman
Maintainer: Karl W Broman
DESCRIPTION | 8 ++++----
MD5 | 36 ++++++++++++++++++------------------
R/summary.cross.R | 14 +++++++-------
build/vignette.rds |binary
data/badorder.RData |binary
data/bristle3.RData |binary
data/bristleX.RData |binary
data/fake.4way.RData |binary
data/fake.bc.RData |binary
data/fake.f2.RData |binary
data/hyper.RData |binary
data/listeria.RData |binary
data/locations.RData |binary
data/map10.RData |binary
data/mapthis.RData |binary
data/multitrait.RData |binary
inst/STATUS.txt | 11 +++++++++++
inst/TODO.txt | 7 +++++++
inst/doc/rqtltour.pdf |binary
19 files changed, 47 insertions(+), 29 deletions(-)
Title: Creating and Plotting Data Objects for Understanding Random
Forests
Diff between ggRandomForests versions 1.1.0 dated 2014-12-05 and 1.1.1 dated 2014-12-12
More information about ggRandomForests at CRAN
Description: The ggRandomForests package contains tools for creating and
plotting data structures to visually understand random forest models. The
functions are designed for use with the randomForestSRC package. This
package is structured to extract intermediate data objects from the random
forest. S3 Plot functions, which use the ggplot2 package, are included for
each data object.
Author: John Ehrlinger
Maintainer: John Ehrlinger
ggRandomForests-1.1.0/ggRandomForests/R/eventtable.R |only
ggRandomForests-1.1.0/ggRandomForests/R/pbc_prtl.R |only
ggRandomForests-1.1.0/ggRandomForests/data/pbc_ggpart.rda |only
ggRandomForests-1.1.0/ggRandomForests/data/pbc_prtl.rda |only
ggRandomForests-1.1.0/ggRandomForests/man/eventtable.Rd |only
ggRandomForests-1.1.0/ggRandomForests/man/pbc_prtl.Rd |only
ggRandomForests-1.1.1/ggRandomForests/DESCRIPTION | 11
ggRandomForests-1.1.1/ggRandomForests/MD5 | 250 ++--
ggRandomForests-1.1.1/ggRandomForests/NAMESPACE | 3
ggRandomForests-1.1.1/ggRandomForests/NEWS | 13
ggRandomForests-1.1.1/ggRandomForests/R/airq_interaction.R | 6
ggRandomForests-1.1.1/ggRandomForests/R/airq_prtl.R | 4
ggRandomForests-1.1.1/ggRandomForests/R/airq_rf.R | 8
ggRandomForests-1.1.1/ggRandomForests/R/airq_vs.R | 4
ggRandomForests-1.1.1/ggRandomForests/R/calc_roc.R | 16
ggRandomForests-1.1.1/ggRandomForests/R/combine.gg_partial.R | 67 -
ggRandomForests-1.1.1/ggRandomForests/R/gg_error.ggRandomForests.R | 28
ggRandomForests-1.1.1/ggRandomForests/R/gg_interaction.ggRandomForests.R | 38
ggRandomForests-1.1.1/ggRandomForests/R/gg_minimal_depth.ggRandomForests.R | 14
ggRandomForests-1.1.1/ggRandomForests/R/gg_minimal_vimp.ggRandomForests.R | 33
ggRandomForests-1.1.1/ggRandomForests/R/gg_partial.ggRandomForests.R | 51
ggRandomForests-1.1.1/ggRandomForests/R/gg_rfsrc.ggRandomForests.R | 79 -
ggRandomForests-1.1.1/ggRandomForests/R/gg_roc.ggRandomForests.R | 20
ggRandomForests-1.1.1/ggRandomForests/R/gg_survival.ggRandomForests.R | 151 --
ggRandomForests-1.1.1/ggRandomForests/R/gg_variable.ggRandomForests.R | 86 -
ggRandomForests-1.1.1/ggRandomForests/R/gg_variable.randomForests.R | 4
ggRandomForests-1.1.1/ggRandomForests/R/gg_vimp.ggRandomForests.R | 59
ggRandomForests-1.1.1/ggRandomForests/R/iris_interaction.R | 2
ggRandomForests-1.1.1/ggRandomForests/R/kaplan.R | 85 -
ggRandomForests-1.1.1/ggRandomForests/R/mtcars_interaction.R | 6
ggRandomForests-1.1.1/ggRandomForests/R/mtcars_prtl.R | 4
ggRandomForests-1.1.1/ggRandomForests/R/mtcars_vs.R | 4
ggRandomForests-1.1.1/ggRandomForests/R/nelson.R | 103 +
ggRandomForests-1.1.1/ggRandomForests/R/pbc_ggpart.R | 6
ggRandomForests-1.1.1/ggRandomForests/R/pbc_prtl_bili_age.R |only
ggRandomForests-1.1.1/ggRandomForests/R/pbc_prtl_bili_albumin.R |only
ggRandomForests-1.1.1/ggRandomForests/R/pbc_prtl_bili_prothrombin.R |only
ggRandomForests-1.1.1/ggRandomForests/R/pbc_prtl_time.R |only
ggRandomForests-1.1.1/ggRandomForests/R/pbc_vs.R | 4
ggRandomForests-1.1.1/ggRandomForests/R/plot.gg_error.R | 34
ggRandomForests-1.1.1/ggRandomForests/R/plot.gg_interaction.R | 87 -
ggRandomForests-1.1.1/ggRandomForests/R/plot.gg_minimal_depth.R | 82 -
ggRandomForests-1.1.1/ggRandomForests/R/plot.gg_minimal_vimp.R | 70 -
ggRandomForests-1.1.1/ggRandomForests/R/plot.gg_partial.R | 46
ggRandomForests-1.1.1/ggRandomForests/R/plot.gg_partial_list.R | 33
ggRandomForests-1.1.1/ggRandomForests/R/plot.gg_rfsrc.R | 77 -
ggRandomForests-1.1.1/ggRandomForests/R/plot.gg_roc.R | 58
ggRandomForests-1.1.1/ggRandomForests/R/plot.gg_survival.R | 120 +
ggRandomForests-1.1.1/ggRandomForests/R/plot.gg_variable.R | 165 +-
ggRandomForests-1.1.1/ggRandomForests/R/plot.gg_vimp.R | 82 -
ggRandomForests-1.1.1/ggRandomForests/R/print.gg_error.R | 8
ggRandomForests-1.1.1/ggRandomForests/R/print.gg_interaction.R | 8
ggRandomForests-1.1.1/ggRandomForests/R/print.gg_minimal_depth.R | 24
ggRandomForests-1.1.1/ggRandomForests/R/print.gg_rfsrc.R | 18
ggRandomForests-1.1.1/ggRandomForests/R/rebuild_cache_datasets.R | 134 +-
ggRandomForests-1.1.1/ggRandomForests/R/veteran_interaction.R | 4
ggRandomForests-1.1.1/ggRandomForests/R/veteran_prtl.R | 4
ggRandomForests-1.1.1/ggRandomForests/R/veteran_vs.R | 4
ggRandomForests-1.1.1/ggRandomForests/data/airq_interaction.rda |binary
ggRandomForests-1.1.1/ggRandomForests/data/airq_prtl.rda |binary
ggRandomForests-1.1.1/ggRandomForests/data/airq_rf.rda |binary
ggRandomForests-1.1.1/ggRandomForests/data/airq_vs.rda |binary
ggRandomForests-1.1.1/ggRandomForests/data/datalist | 6
ggRandomForests-1.1.1/ggRandomForests/data/iris_interaction.rda |binary
ggRandomForests-1.1.1/ggRandomForests/data/iris_prtl.rda |binary
ggRandomForests-1.1.1/ggRandomForests/data/iris_rf.rda |binary
ggRandomForests-1.1.1/ggRandomForests/data/iris_vs.rda |binary
ggRandomForests-1.1.1/ggRandomForests/data/mtcars_interaction.rda |binary
ggRandomForests-1.1.1/ggRandomForests/data/mtcars_prtl.rda |binary
ggRandomForests-1.1.1/ggRandomForests/data/mtcars_rf.rda |binary
ggRandomForests-1.1.1/ggRandomForests/data/mtcars_vs.rda |binary
ggRandomForests-1.1.1/ggRandomForests/data/pbc_interaction.rda |binary
ggRandomForests-1.1.1/ggRandomForests/data/pbc_prtl_bili_age.rda |only
ggRandomForests-1.1.1/ggRandomForests/data/pbc_prtl_bili_albumin.rda |only
ggRandomForests-1.1.1/ggRandomForests/data/pbc_prtl_bili_prothrombin.rda |only
ggRandomForests-1.1.1/ggRandomForests/data/pbc_prtl_time.rda |only
ggRandomForests-1.1.1/ggRandomForests/data/pbc_rf.rda |binary
ggRandomForests-1.1.1/ggRandomForests/data/pbc_vs.rda |binary
ggRandomForests-1.1.1/ggRandomForests/data/veteran_interaction.rda |binary
ggRandomForests-1.1.1/ggRandomForests/data/veteran_prtl.rda |binary
ggRandomForests-1.1.1/ggRandomForests/data/veteran_rf.rda |binary
ggRandomForests-1.1.1/ggRandomForests/data/veteran_vs.rda |binary
ggRandomForests-1.1.1/ggRandomForests/inst/doc/randomForestSurvival.R | 551 +++++++-
ggRandomForests-1.1.1/ggRandomForests/inst/doc/randomForestSurvival.Rnw | 623 +++++++---
ggRandomForests-1.1.1/ggRandomForests/inst/doc/randomForestSurvival.pdf |binary
ggRandomForests-1.1.1/ggRandomForests/man/airq_interaction.Rd | 6
ggRandomForests-1.1.1/ggRandomForests/man/airq_prtl.Rd | 4
ggRandomForests-1.1.1/ggRandomForests/man/airq_rf.Rd | 8
ggRandomForests-1.1.1/ggRandomForests/man/airq_vs.Rd | 4
ggRandomForests-1.1.1/ggRandomForests/man/calc_roc.rfsrc.Rd | 2
ggRandomForests-1.1.1/ggRandomForests/man/combine.Rd | 30
ggRandomForests-1.1.1/ggRandomForests/man/gg_error.ggRandomForests.Rd | 12
ggRandomForests-1.1.1/ggRandomForests/man/gg_interaction.ggRandomForests.Rd | 22
ggRandomForests-1.1.1/ggRandomForests/man/gg_minimal_depth.ggRandomForests.Rd | 12
ggRandomForests-1.1.1/ggRandomForests/man/gg_minimal_vimp.ggRandomForests.Rd | 12
ggRandomForests-1.1.1/ggRandomForests/man/gg_partial.ggRandomForests.Rd | 12
ggRandomForests-1.1.1/ggRandomForests/man/gg_rfsrc.ggRandomForests.Rd | 15
ggRandomForests-1.1.1/ggRandomForests/man/gg_roc.ggRandomForests.Rd | 12
ggRandomForests-1.1.1/ggRandomForests/man/gg_survival.ggRandomForests.Rd | 60
ggRandomForests-1.1.1/ggRandomForests/man/gg_variable.ggRandomForests.Rd | 46
ggRandomForests-1.1.1/ggRandomForests/man/gg_vimp.ggRandomForests.Rd | 12
ggRandomForests-1.1.1/ggRandomForests/man/iris_interaction.Rd | 2
ggRandomForests-1.1.1/ggRandomForests/man/kaplan.Rd | 29
ggRandomForests-1.1.1/ggRandomForests/man/mtcars_interaction.Rd | 6
ggRandomForests-1.1.1/ggRandomForests/man/mtcars_prtl.Rd | 4
ggRandomForests-1.1.1/ggRandomForests/man/mtcars_vs.Rd | 4
ggRandomForests-1.1.1/ggRandomForests/man/nelson.Rd | 27
ggRandomForests-1.1.1/ggRandomForests/man/pbc_ggpart.Rd | 6
ggRandomForests-1.1.1/ggRandomForests/man/pbc_prtl_bili_age.Rd |only
ggRandomForests-1.1.1/ggRandomForests/man/pbc_prtl_bili_albumin.Rd |only
ggRandomForests-1.1.1/ggRandomForests/man/pbc_prtl_bili_prothrombin.Rd |only
ggRandomForests-1.1.1/ggRandomForests/man/pbc_prtl_time.Rd |only
ggRandomForests-1.1.1/ggRandomForests/man/pbc_vs.Rd | 4
ggRandomForests-1.1.1/ggRandomForests/man/plot.gg_error.Rd | 12
ggRandomForests-1.1.1/ggRandomForests/man/plot.gg_interaction.Rd | 24
ggRandomForests-1.1.1/ggRandomForests/man/plot.gg_minimal_depth.Rd | 20
ggRandomForests-1.1.1/ggRandomForests/man/plot.gg_minimal_vimp.Rd | 16
ggRandomForests-1.1.1/ggRandomForests/man/plot.gg_partial.Rd | 12
ggRandomForests-1.1.1/ggRandomForests/man/plot.gg_rfsrc.Rd | 14
ggRandomForests-1.1.1/ggRandomForests/man/plot.gg_roc.Rd | 12
ggRandomForests-1.1.1/ggRandomForests/man/plot.gg_survival.Rd | 42
ggRandomForests-1.1.1/ggRandomForests/man/plot.gg_variable.Rd | 30
ggRandomForests-1.1.1/ggRandomForests/man/plot.gg_vimp.Rd | 20
ggRandomForests-1.1.1/ggRandomForests/man/print.gg_error.Rd | 8
ggRandomForests-1.1.1/ggRandomForests/man/print.gg_interaction.Rd | 8
ggRandomForests-1.1.1/ggRandomForests/man/print.gg_minimal_depth.Rd | 8
ggRandomForests-1.1.1/ggRandomForests/man/print.gg_rfsrc.Rd | 8
ggRandomForests-1.1.1/ggRandomForests/man/rebuild_cache_datasets.Rd | 8
ggRandomForests-1.1.1/ggRandomForests/man/veteran_interaction.Rd | 4
ggRandomForests-1.1.1/ggRandomForests/man/veteran_prtl.Rd | 4
ggRandomForests-1.1.1/ggRandomForests/man/veteran_vs.Rd | 4
ggRandomForests-1.1.1/ggRandomForests/tests/testthat/test_gg_partial.R | 53
ggRandomForests-1.1.1/ggRandomForests/tests/testthat/test_gg_survival.R | 82 -
ggRandomForests-1.1.1/ggRandomForests/vignettes/randomForestSurvival-concordance.tex | 8
ggRandomForests-1.1.1/ggRandomForests/vignettes/randomForestSurvival.Rnw | 623 +++++++---
135 files changed, 3033 insertions(+), 1735 deletions(-)
Permanent link
Title: Help to Fit of a Parametric Distribution to Non-Censored or
Censored Data
Diff between fitdistrplus versions 1.0-2 dated 2014-02-12 and 1.0-3 dated 2014-12-12
Description: Extends the fitdistr function (of the MASS package) with several functions to help the fit of a parametric distribution to non-censored or censored data. Censored data may contain left censored, right censored and interval censored values, with several lower and upper bounds. In addition to maximum likelihood estimation method the package provides moment matching, quantile matching and maximum goodness-of-fit estimation methods (available only for non-censored data).
Author: Marie Laure Delignette-Muller [aut, cre],
Christophe Dutang [aut],
Regis Pouillot [ctb],
Jean-Baptiste Denis [ctb]
Maintainer: Marie Laure Delignette-Muller
DESCRIPTION | 25 -
MD5 | 74 ++---
NAMESPACE | 26 +
R/cdfcomp.R | 7
R/coef.R |only
R/descdist.R | 63 ++--
R/fitdist.R | 35 +-
R/fitdistcens.R | 256 +++++++++---------
R/gofstat.R | 5
R/logLik.R |only
R/mledist.R | 595 +++++++++++++++++++++---------------------
R/vcov.R |only
build |only
data/danishmulti.rda |binary
data/danishuni.rda |binary
data/endosulfan.rda |binary
data/fluazinam.rda |binary
data/groundbeef.rda |binary
data/salinity.rda |binary
data/smokedfish.rda |binary
data/toxocara.rda |binary
inst/CITATION | 27 +
inst/NEWS | 18 +
inst/doc |only
man/bootdist.Rd | 3
man/bootdistcens.Rd | 3
man/cdfcompcens.Rd | 3
man/descdist.Rd | 15 -
man/endosulfan.Rd | 2
man/fitdist.Rd | 86 ++++--
man/fitdistcens.Rd | 36 +-
man/gofstat.Rd | 9
man/graphcomp.Rd | 18 -
man/mledist.Rd | 3
man/plotdist.Rd | 3
man/qmedist.Rd | 3
man/quantiles.Rd | 6
tests/fitdist.R | 661 +++++++++++++++++++++++++----------------------
tests/logLik-vcov-coef.R |only
vignettes |only
40 files changed, 1098 insertions(+), 884 deletions(-)
Title: Evaluation of Surrogate Endpoints in Clinical Trials
Diff between Surrogate versions 0.1-3 dated 2014-10-24 and 0.1-4 dated 2014-12-12
Description: In a clinical trial, it frequently occurs that the most credible outcome to evaluate the effectiveness of a new therapy (the true endpoint) is difficult to measure. In such a situation, it can be an effective strategy to replace the true endpoint by a biomarker that is easier to measure and that allows for a prediction of the treatment effect on the true endpoint (a surrogate endpoint). The package 'Surrogate' allows for an evaluation of the appropriateness of a candidate surrogate endpoint based on the meta-analytic, information-theoretic, and causal-inference frameworks. Part of this software has been developed using funding provided from the European Union's 7th Framework Programme for research, technological development and demonstration under Grant Agreement no 602552.
Author: Wim Van der Elst, Ariel Alonso & Geert Molenberghs
Maintainer: Wim Van der Elst
Surrogate-0.1-3/Surrogate/INDEX |only
Surrogate-0.1-4/Surrogate/DESCRIPTION | 12 +-
Surrogate-0.1-4/Surrogate/MD5 | 54 +++++++---
Surrogate-0.1-4/Surrogate/NEWS | 10 +
Surrogate-0.1-4/Surrogate/R/CausalDiagramBinBin.R |only
Surrogate-0.1-4/Surrogate/R/FixedContContIT.r | 5
Surrogate-0.1-4/Surrogate/R/ICA.BinBin.Grid.Full.R |only
Surrogate-0.1-4/Surrogate/R/ICA.BinBin.Grid.Sample.R |only
Surrogate-0.1-4/Surrogate/R/ICABinBin.R |only
Surrogate-0.1-4/Surrogate/R/MarginalProbs.R |only
Surrogate-0.1-4/Surrogate/R/MixedContContIT.R | 2
Surrogate-0.1-4/Surrogate/R/RandVec.R |only
Surrogate-0.1-4/Surrogate/R/Restrictions.BinBin.R |only
Surrogate-0.1-4/Surrogate/R/SimDataCounterfactualsBinBin.R |only
Surrogate-0.1-4/Surrogate/R/SimDataSTSBinBin.R |only
Surrogate-0.1-4/Surrogate/R/plot.InfoTheoretic.R | 1
Surrogate-0.1-4/Surrogate/R/plot_ICABinBin.R |only
Surrogate-0.1-4/Surrogate/R/summary_ICABinBin.R |only
Surrogate-0.1-4/Surrogate/data/CIGTS.rda |only
Surrogate-0.1-4/Surrogate/man/ARMD.Rd | 2
Surrogate-0.1-4/Surrogate/man/CIGTS.Rd |only
Surrogate-0.1-4/Surrogate/man/CausalDiagramBinBin.Rd |only
Surrogate-0.1-4/Surrogate/man/CausalDiagramContCont.Rd | 2
Surrogate-0.1-4/Surrogate/man/FixedContContIT.Rd | 3
Surrogate-0.1-4/Surrogate/man/ICA.BinBin.Grid.Full.Rd |only
Surrogate-0.1-4/Surrogate/man/ICA.BinBin.Grid.Sample.Rd |only
Surrogate-0.1-4/Surrogate/man/ICABinBin.Rd |only
Surrogate-0.1-4/Surrogate/man/ICAContCont.Rd | 5
Surrogate-0.1-4/Surrogate/man/MICAContCont.Rd | 6 -
Surrogate-0.1-4/Surrogate/man/MarginalProbs.Rd |only
Surrogate-0.1-4/Surrogate/man/MinSurrContCont.Rd | 2
Surrogate-0.1-4/Surrogate/man/MixedContContIT.Rd | 4
Surrogate-0.1-4/Surrogate/man/RandVec.Rd |only
Surrogate-0.1-4/Surrogate/man/Restrictions.BinBin.Rd |only
Surrogate-0.1-4/Surrogate/man/Sim.Data.Counterfactuals.Rd | 5
Surrogate-0.1-4/Surrogate/man/Sim.Data.CounterfactualsBinBin.Rd |only
Surrogate-0.1-4/Surrogate/man/Sim.Data.STSBinBin.Rd |only
Surrogate-0.1-4/Surrogate/man/plot.CausalInference.Rd | 6 -
Surrogate-0.1-4/Surrogate/man/plot.ICABinBin.Rd |only
Surrogate-0.1-4/Surrogate/man/summary.gen.Rd | 4
40 files changed, 80 insertions(+), 43 deletions(-)
Title: Supplementary Item Response Theory Models
Diff between sirt versions 1.1 dated 2014-11-23 and 1.2 dated 2014-12-12
Description:
Supplementary item response theory models
to complement existing functions in R.
Author: Alexander Robitzsch [aut,cre]
Maintainer: Alexander Robitzsch
DESCRIPTION | 8 +--
MD5 | 41 +++++++++++--------
NAMESPACE | 39 +++++++++++++-----
R/mirt.IRT.functions.R |only
R/pcm.fit.R |only
R/wle.rasch.R | 10 +++-
R/zzz.R | 11 +++--
data/data.eid.rda |only
data/data.g308.rda |only
inst/NEWS | 30 +++++++++++++-
man/brm.sim.Rd | 90 ++++++++++++++++++++++++++++++++++++++++---
man/data.eid.Rd |only
man/data.g308.Rd |only
man/data.ratings1.Rd | 2
man/data.si.Rd | 16 +++++++
man/isop.Rd | 2
man/mirt.specify.partable.Rd | 6 +-
man/mirt.wrapper.Rd | 31 ++++++++++++++
man/pcm.conversion.Rd | 13 +++---
man/pcm.fit.Rd |only
man/personfit.stat.Rd | 4 +
man/rasch.evm.pcm.Rd | 15 +++----
man/sirt-package.Rd | 67 +++++++++++++++++---------------
man/wle.rasch.Rd | 8 +++
src/pbivnorm_rcpp_aux.h | 40 ++++++++++++++-----
25 files changed, 327 insertions(+), 106 deletions(-)
Title: Access NBN Data
Diff between rnbn versions 1.0.0 dated 2014-07-22 and 1.0.3 dated 2014-12-12
Description: Access to data held by the National Biodiversity Network (NBN, www.nbn.org.uk). The NBN acts as a data warehouse for biological records data in the UK and is the UK node of GBIF (Global Biodiversity Information Facility). In this package NBN data is accessed via its web-services.
Author: Stuart Ball & Tom August
Maintainer: Tom August
rnbn-1.0.0/rnbn/R/NBNCookies.r |only
rnbn-1.0.0/rnbn/R/getLogin.r |only
rnbn-1.0.0/rnbn/R/modalDialog.R |only
rnbn-1.0.0/rnbn/data |only
rnbn-1.0.0/rnbn/inst/doc/rnbn.pdf |only
rnbn-1.0.0/rnbn/man/NBNCookies.Rd |only
rnbn-1.0.0/rnbn/man/datum_vars.Rd |only
rnbn-1.0.0/rnbn/man/getLogin.Rd |only
rnbn-1.0.0/rnbn/man/helmert_trans_vars.Rd |only
rnbn-1.0.3/rnbn/DESCRIPTION | 18 +-
rnbn-1.0.3/rnbn/MD5 | 37 ++---
rnbn-1.0.3/rnbn/NAMESPACE | 4
rnbn-1.0.3/rnbn/R/getOccurrences.R | 11 -
rnbn-1.0.3/rnbn/R/gr2gps_latlon.r | 20 +-
rnbn-1.0.3/rnbn/R/nbnlogin.r | 91 +++----------
rnbn-1.0.3/rnbn/R/runnbnurl.R | 168 +++++++-----------------
rnbn-1.0.3/rnbn/R/sysdata.rda |only
rnbn-1.0.3/rnbn/build |only
rnbn-1.0.3/rnbn/inst/doc/rnbn_vignette.Rmd |only
rnbn-1.0.3/rnbn/inst/doc/rnbn_vignette.html |only
rnbn-1.0.3/rnbn/inst/tests/testdataProviders.R | 8 -
rnbn-1.0.3/rnbn/inst/tests/testdatasetTaxa.R | 8 -
rnbn-1.0.3/rnbn/inst/tests/testgetFeature.R | 5
rnbn-1.0.3/rnbn/inst/tests/testgetOccurrences.R | 5
rnbn-1.0.3/rnbn/inst/tests/testgetTaxonomy.r | 2
rnbn-1.0.3/rnbn/vignettes |only
26 files changed, 148 insertions(+), 229 deletions(-)
Title: Flux estimation with static chamber data
Diff between HMR versions 0.3.1 dated 2011-02-10 and 0.3.2 dated 2014-12-12
Description: Statistical analysis of static chamber concentration data for trace gas flux estimation
Author: Asger R. Pedersen
Maintainer: Asger R. Pedersen
HMR-0.3.1/HMR/Desktop.ini |only
HMR-0.3.2/HMR/DESCRIPTION | 15 +++++++--------
HMR-0.3.2/HMR/MD5 |only
HMR-0.3.2/HMR/NAMESPACE |only
HMR-0.3.2/HMR/R/HMR.fit1.R | 6 +++---
HMR-0.3.2/HMR/man/HMR.Rd | 4 ++--
6 files changed, 12 insertions(+), 13 deletions(-)
Title: A Package for Coincidence Analysis (CNA)
Diff between cna versions 1.0-0 dated 2014-10-01 and 1.0-1 dated 2014-12-12
Description: Provides functions for performing Coincidence Analysis (CNA).
Author: Ambuehl, Mathias, Michael Baumgartner, Ruedi Epple, Alexis Kauffmann and Alrik Thiem
Maintainer: Alexis Kauffmann
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
man/cna.Rd | 40 ++++++++++++++++++++++------------------
man/condTbl.Rd | 11 +++++++++++
man/condition.Rd | 4 ++++
5 files changed, 45 insertions(+), 26 deletions(-)
Title: Network Meta-Analysis Using Bayesian Methods
Diff between gemtc versions 0.6 dated 2014-03-11 and 0.6-1 dated 2014-12-12
Description: Network meta-analyses (mixed treatment comparisons) in the Bayesian framework. You need either BUGS or JAGS to use this package, preferably JAGS (through the rjags package). Includes methods to assess heterogeneity and inconsistency, and a number of standard visualizations.
Author: Gert van Valkenhoef, Joel Kuiper
Maintainer: Gert van Valkenhoef
DESCRIPTION | 12 +++----
MD5 | 27 +++++++++--------
NEWS | 15 +++++++++
R/anohe.R | 2 -
R/inits.R | 11 +++++--
R/minimum.diameter.spanning.tree.R | 30 +++++++++++++++++++
R/mtc.model.R | 13 ++++++--
R/mtc.model.nodesplit.R | 2 -
R/mtc.network.R | 13 ++++----
R/mtc.run.R | 16 +++-------
R/rank.probability.R | 6 ---
inst/extdata/parkinson.ns.rds |only
man/mtc.nodesplit.Rd | 22 ++++++++++++++
src/rank.c | 45 ++++++++++++++++-------------
tests/testthat/test-unit-relative.effect.R | 11 +++++++
15 files changed, 158 insertions(+), 67 deletions(-)
Title: Multivariate Adaptive Regression Splines
Diff between earth versions 3.2-7 dated 2014-01-28 and 4.0.0 dated 2014-12-12
Description: Build regression models using the techniques in Friedman's
papers "Fast MARS" and "Multivariate Adaptive Regression
Splines". (The term "MARS" is trademarked and thus not used in
the name of the package.)
Author: Stephen Milborrow. Derived from mda:mars by Trevor Hastie and
Rob Tibshirani. Uses Alan Miller's Fortran utilities
with Thomas Lumley's leaps wrapper.
Maintainer: Stephen Milborrow
earth-3.2-7/earth/build |only
earth-3.2-7/earth/inst/doc/earth-notes.Rnw |only
earth-3.2-7/earth/src/tests |only
earth-3.2-7/earth/vignettes |only
earth-4.0.0/earth/.Rinstignore | 2
earth-4.0.0/earth/DESCRIPTION | 14
earth-4.0.0/earth/MD5 | 184 -
earth-4.0.0/earth/NAMESPACE | 9
earth-4.0.0/earth/NEWS | 87
earth-4.0.0/earth/R/earth.R | 601 +++---
earth-4.0.0/earth/R/earth.cv.R | 170 +
earth-4.0.0/earth/R/earth.cv.lib.R | 10
earth-4.0.0/earth/R/earth.glm.R | 49
earth-4.0.0/earth/R/earth.leaps.R | 2
earth-4.0.0/earth/R/earth.regress.R | 13
earth-4.0.0/earth/R/earthlib.R | 376 ++-
earth-4.0.0/earth/R/elegend.R | 18
earth-4.0.0/earth/R/evimp.R | 8
earth-4.0.0/earth/R/expand.arg.R | 5
earth-4.0.0/earth/R/format.earth.R | 28
earth-4.0.0/earth/R/mars.to.earth.R | 20
earth-4.0.0/earth/R/model.matrix.earth.R | 34
earth-4.0.0/earth/R/plot.earth.R | 740 +++----
earth-4.0.0/earth/R/plot.model.selection.R | 329 ++-
earth-4.0.0/earth/R/plotd.R | 89
earth-4.0.0/earth/R/plotmo.methods.earth.R | 13
earth-4.0.0/earth/R/plotmor.R |only
earth-4.0.0/earth/R/predict.earth.R | 84
earth-4.0.0/earth/R/print.earth.R | 153 +
earth-4.0.0/earth/R/varmod.R |only
earth-4.0.0/earth/inst/doc/earth-notes.pdf |binary
earth-4.0.0/earth/inst/doc/earth-varmod.pdf |only
earth-4.0.0/earth/inst/doc/index.html | 3
earth-4.0.0/earth/inst/slowtests |only
earth-4.0.0/earth/man/contr.earth.response.Rd | 4
earth-4.0.0/earth/man/earth.Rd | 836 ++++----
earth-4.0.0/earth/man/evimp.Rd | 16
earth-4.0.0/earth/man/format.earth.Rd | 71
earth-4.0.0/earth/man/mars.to.earth.Rd | 32
earth-4.0.0/earth/man/model.matrix.earth.Rd | 47
earth-4.0.0/earth/man/plot.earth.Rd | 473 +++-
earth-4.0.0/earth/man/plot.earth.models.Rd | 36
earth-4.0.0/earth/man/plot.evimp.Rd | 7
earth-4.0.0/earth/man/plot.varmod.Rd |only
earth-4.0.0/earth/man/plotd.Rd | 10
earth-4.0.0/earth/man/predict.earth.Rd | 46
earth-4.0.0/earth/man/predict.varmod.Rd |only
earth-4.0.0/earth/man/print.evimp.Rd | 4
earth-4.0.0/earth/man/residuals.earth.Rd | 23
earth-4.0.0/earth/man/summary.earth.Rd | 40
earth-4.0.0/earth/man/update.earth.Rd | 17
earth-4.0.0/earth/man/varmod.Rd |only
earth-4.0.0/earth/src/allowed.c | 28
earth-4.0.0/earth/src/earth.c | 2565 +++++++++++++++-----------
earth-4.0.0/earth/src/earth.h | 98
earth-4.0.0/earth/tests/README.txt | 2
earth-4.0.0/earth/tests/test.earth.R | 24
earth-4.0.0/earth/tests/test.earth.Rout.save | 76
58 files changed, 4233 insertions(+), 3263 deletions(-)
Title: Regression models with breakpoints/changepoints estimation
Diff between segmented versions 0.5-0.0 dated 2014-09-10 and 0.5-1.0 dated 2014-12-12
Description: Given a regression model, segmented `updates' the model by adding one or more segmented (i.e., piecewise-linear) relationships. Several variables with multiple breakpoints are allowed.
Author: Vito M. R. Muggeo [aut, cre]
Maintainer: Vito M. R. Muggeo
segmented |only
1 file changed
More information about InvariantCausalPrediction at CRAN
Permanent link
Title: Spatial Modelling for Distance Sampling Data
Diff between DSpat versions 0.1.5 dated 2012-11-08 and 0.1.6 dated 2014-12-12
Description: Fits inhomogeneous Poisson process spatial models
to line transect sampling data and provides estimate of
abundance within a region.
Author: Devin Johnson, Jeff Laake, Jay VerHoef
Maintainer: Jeff Laake
DSpat |only
1 file changed
Title: R-Based API for accessing the MSKCC Cancer Genomics Data Server
(CGDS).
Diff between cgdsr versions 1.1.30 dated 2013-09-17 and 1.1.31 dated 2014-12-12
Description: The package provides a basic set of R functions for querying the Cancer Genomics Data Server (CGDS), hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).
Author: Anders Jacobsen Skanderup
Maintainer: Anders Jacobsen Skanderup
ChangeLog |only
DESCRIPTION | 12 ++++++------
MD5 | 8 +++++---
R/cgdsr.R | 10 +++++++---
build |only
inst/doc/cgdsr.pdf |binary
6 files changed, 18 insertions(+), 12 deletions(-)
Title: Multivariate Exploratory Data Analysis and Data Mining with R
Diff between FactoMineR versions 1.27 dated 2014-08-28 and 1.28 dated 2014-12-12
Description: Exploratory data analysis methods such as principal component methods and clustering
Author: Francois Husson, Julie Josse, Sebastien Le, Jeremy Mazet
Maintainer: Francois Husson
FactoMineR-1.27/FactoMineR/data/mortalitySPAIN.rda |only
FactoMineR-1.27/FactoMineR/man/mortalitySPAIN.Rd |only
FactoMineR-1.28/FactoMineR/DESCRIPTION | 8
FactoMineR-1.28/FactoMineR/MD5 | 55 +--
FactoMineR-1.28/FactoMineR/R/CA.R | 3
FactoMineR-1.28/FactoMineR/R/CaGalt.R | 98 +++---
FactoMineR-1.28/FactoMineR/R/DMFA.R | 5
FactoMineR-1.28/FactoMineR/R/FAMD.R | 3
FactoMineR-1.28/FactoMineR/R/HCPC.R | 36 +-
FactoMineR-1.28/FactoMineR/R/MCA.R | 7
FactoMineR-1.28/FactoMineR/R/MFA.R | 15
FactoMineR-1.28/FactoMineR/R/PCA.R | 19 -
FactoMineR-1.28/FactoMineR/R/RegBest.r | 2
FactoMineR-1.28/FactoMineR/R/catdes.r | 3
FactoMineR-1.28/FactoMineR/R/condes.r | 4
FactoMineR-1.28/FactoMineR/R/plot.CaGalt.R | 121 +++----
FactoMineR-1.28/FactoMineR/R/plot.HCPC.R | 22 -
FactoMineR-1.28/FactoMineR/R/plot.MFA.R | 9
FactoMineR-1.28/FactoMineR/R/plotellipses.r | 9
FactoMineR-1.28/FactoMineR/data/datalist | 1
FactoMineR-1.28/FactoMineR/data/health.rda |binary
FactoMineR-1.28/FactoMineR/inst/doc/FactoMineR.pdf |binary
FactoMineR-1.28/FactoMineR/inst/doc/clustering_and_pricipal_component_methods.pdf |binary
FactoMineR-1.28/FactoMineR/man/CaGalt.Rd | 119 +++----
FactoMineR-1.28/FactoMineR/man/FactoMineR-package.Rd |only
FactoMineR-1.28/FactoMineR/man/HCPC.Rd | 2
FactoMineR-1.28/FactoMineR/man/health.Rd | 53 +--
FactoMineR-1.28/FactoMineR/man/plot.CaGalt.Rd | 152 ++++------
FactoMineR-1.28/FactoMineR/man/print.CaGalt.Rd | 73 ++--
FactoMineR-1.28/FactoMineR/man/summary.CaGalt.Rd | 81 ++---
30 files changed, 449 insertions(+), 451 deletions(-)
Title: Semi- and nonparametric Bayesian Subset Selection Procedures
Diff between DPw versions 1.1.2 dated 2014-01-24 and 1.1.3 dated 2014-12-12
Description: Implement the Bayesian subset selection procedure proposed in the paper titled "Bayesian Subset Selection Procedures with an Application to Lumber Strength Properties" by Yumi Kondo, James V. Zidek, Carolyn Taylor, and Constance van Eeden. This procedure models the lumber strengths with Dirichlet processes (DP) with the Weibull components and finds, with pre-specified certainty, the smallest subset that contains those species having the smallest alpha-th quantile of strength (i.e., the weakest species). We consider two models for the strengths: [1] A semi-parametric model which assumes that strengths are from the DP mixture of Weibulls; [2] the nonparametric model which assumes that probability measures of strengths are from DP with Weibull base distribution. Either model can be used to estimate the posterior probability that a subset contains the weakest species.
Author: Yumi Kondo
Maintainer: Yumi Kondo
DPw-1.1.2/DPw/R/SpeciesData |only
DPw-1.1.2/DPw/man/DPfit.Rd |only
DPw-1.1.3/DPw/DESCRIPTION | 17
DPw-1.1.3/DPw/MD5 | 17
DPw-1.1.3/DPw/NAMESPACE | 18
DPw-1.1.3/DPw/R/DPw.R | 1114 +++++++++++++++++++++++++++++++------
DPw-1.1.3/DPw/man/ASTM.Rd |only
DPw-1.1.3/DPw/man/accesary.Rd |only
DPw-1.1.3/DPw/man/get.subset.Rd |only
DPw-1.1.3/DPw/man/nonpara.Rd |only
DPw-1.1.3/DPw/man/semipara.Rd |only
DPw-1.1.3/DPw/src/DPw.c | 1195 ++++++++++++++++++++++++++--------------
12 files changed, 1754 insertions(+), 607 deletions(-)