Sat, 13 Dec 2014

New package qqtest with initial version 1.0
Package: qqtest
Type: Package
Title: Quantile Quantile Plots Self Calibrating For Visual Testing
Version: 1.0
Date: 2014-12-02
Authors@R: person("Wayne", "Oldford", email="rwoldford@uwaterloo.ca", role=c("aut", "cre"))
Maintainer: Wayne Oldford
Description: Provides the function qqtest which incorporates uncertainty in its qqplot display(s) so that the user might have a better sense of the evidence against the specified distributional hypothesis. qqtest draws a quantile quantile plot for visually assessing whether the data come from a test distribution that has been defined in one of many ways. The vertical axis plots the data quantiles, the horizontal those of a test distribution. The default behaviour generates 1000 samples from the test distribution and overlays the plot with pointwise interval estimates for the ordered quantiles from the test distribution. A small number of independently generated exemplar quantile plots are also overlaid. Both the interval estimates and the exemplars provide different comparative information to assess the evidence provided by the qqplot for or against the hypothesis that the data come from the test distribution (default is normal or gaussian). Finally, a visual test of significance (a lineup plot) can also be displayed to test the null hypothesis that the data come from the test distribution.
License: GPL-3
Depends: R (>= 2.10.0)
Imports: grDevices, MASS
Packaged: 2014-12-13 19:36:06 UTC; rwoldford
Author: Wayne Oldford [aut, cre]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-14 01:15:35

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Package rfoaas updated to version 0.0.4.20141212 with previous version 0.0.4 dated 2014-10-15

Title: R Interface to FOAAS
Description: R access to the FOAAS (F... Off As A Service) web service
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel

Diff between rfoaas versions 0.0.4 dated 2014-10-15 and 0.0.4.20141212 dated 2014-12-13

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New package rodd with initial version 0.1-1
Package: rodd
Type: Package
Title: Optimal Discriminating Designs
Version: 0.1-1
Date: 2014-10-28
Authors@R: c(person("Roman", "Guchenko", role = c("aut", "cre"), email = "RomanGuchenko@yandex.ru"))
Depends: R (>= 3.0.0)
Imports: numDeriv, quadprog, Matrix, rootSolve, matrixcalc
Suggests: mvtnorm
Description: A collection of functions for numerical construction of optimal discriminating designs. At the current moment T-optimal designs (which maximize the lower bound for the power of F-test for regression model discrimination) and their robust analogues can be calculated with the package.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2014-12-13 19:04:46 UTC; Roman
Author: Roman Guchenko [aut, cre]
Maintainer: Roman Guchenko
Repository: CRAN
Date/Publication: 2014-12-14 01:05:16

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Package logconPH updated to version 1.4 with previous version 1.3 dated 2014-10-28

Title: CoxPH Model with Log Concave Baseline Distribution
Description: Computes a cox PH model with a log concave baseline distribution. If no covariates are provided, estimates the log concave NPMLE. Built specifically for interval censored data, where data is a n by 2 matrix with [i, 1] as the left side of the interval for subject i and [i,2] as right side. Uncensored data can be entered by setting [i,1] = [i,2]. Alternatively, this can also handle uncensored data. If all the data is uncensored, you may enter data as a length(n) vector.
Author: Clifford Anderson-Bergman
Maintainer: Clifford Anderson-Bergman

Diff between logconPH versions 1.3 dated 2014-10-28 and 1.4 dated 2014-12-13

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Package checkmate updated to version 1.5.1 with previous version 1.5.0 dated 2014-10-18

Title: Fast and Versatile Argument Checks
Description: Tests and assertions to perform frequent argument checks. A substantial part of the package was written in C to minimize any worries about execution time overhead.
Author: Michel Lang , Bernd Bischl
Maintainer: Michel Lang

Diff between checkmate versions 1.5.0 dated 2014-10-18 and 1.5.1 dated 2014-12-13

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Package blowtorch updated to version 1.0.2 with previous version 1.0.1 dated 2014-05-08

Title: Constrained Optimization Via Stochastic Gradient Descent
Description: Optimize a function with constraints via a transformation of the Lagrangian.
Author: Steven Pollack
Maintainer: Steven Pollack

Diff between blowtorch versions 1.0.1 dated 2014-05-08 and 1.0.2 dated 2014-12-13

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Package multitaper updated to version 1.0-9 with previous version 1.0-8 dated 2013-10-01

Title: Multitaper Spectral Analysis Tools
Description: Implements multitaper spectral analysis using discrete prolate spheroidal sequences (Slepians) and sine tapers. It includes an adaptive weighted multitaper spectral estimate, a coherence estimate, Thomson's Harmonic F-test, and complex demodulation. The Slepians sequences are generated efficiently using a tridiagonal matrix solution, and jackknifed confidence intervals are available for most estimates.
Author: Karim Rahim , Wesley Burr
Maintainer: Karim Rahim

Diff between multitaper versions 1.0-8 dated 2013-10-01 and 1.0-9 dated 2014-12-13

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Package httr updated to version 0.6.0 with previous version 0.5 dated 2014-09-02

Title: Tools for Working with URLs and HTTP
Description: Useful tools for working with HTTP organised by HTTP verbs (GET(), POST(), etc). Configuration functions make it easy to control additional request components (authenticate(), add_headers() and so on).
Author: Hadley Wickham [cre, aut, cph], RStudio [cph]
Maintainer: Hadley Wickham

Diff between httr versions 0.5 dated 2014-09-02 and 0.6.0 dated 2014-12-13

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Package boral updated to version 0.6 with previous version 0.5 dated 2014-09-18

Title: Bayesian Ordination and Regression AnaLysis
Description: Bayesian approaches for analyzing multivariate data in ecology. Estimation is performed using Markov Chain Monte Carlo (MCMC) methods via JAGS. Three types of models may be fitted: 1) With explanatory variables only, boral fits independent column GLMs to each column of the response matrix; 2) With latent variables only, boral fits a purely latent variable model for model-based unconstrained ordination; 3) With explanatory and latent variables, boral fits correlated column GLMs with latent variables to account for any residual correlation between the columns of the response matrix.
Author: Francis K.C. Hui
Maintainer: Francis Hui

Diff between boral versions 0.5 dated 2014-09-18 and 0.6 dated 2014-12-13

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 24 files changed, 1094 insertions(+), 849 deletions(-)

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Package MVPARTwrap (with last version 0.1-9.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-09-22 0.1-9.2
2013-09-08 0.1-9.1
2012-05-02 0.1-9
2011-11-17 0.1-8
2011-11-16 0.1-7

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Package KsPlot (with last version 1.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-11-24 1.3
2011-09-20 1.2
2011-05-03 1.1
2011-04-03 1.0

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Package mvpart (with last version 1.6-2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-06-24 1.6-2
2013-04-19 1.6-1
2012-02-19 1.6-0
2012-01-07 1.5-0
2011-03-11 1.4-0
2010-03-01 1.3-1
2010-02-06 1.3-0
2007-10-12 1.2-6
2007-09-30 1.2-5
2006-09-29 1.2-4

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Package Tampo (with last version 1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-09-01 1.0

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Package roxygen2 updated to version 4.1.0 with previous version 4.0.2 dated 2014-09-02

Title: In-source Documentation for R
Description: A Doxygen-like in-source documentation system for Rd, collation, and NAMESPACE.
Author: Hadley Wickham [aut, cre, cph], Peter Danenberg [aut, cph], Manuel Eugster [aut, cph], RStudio [cph]
Maintainer: Hadley Wickham

Diff between roxygen2 versions 4.0.2 dated 2014-09-02 and 4.1.0 dated 2014-12-13

 DESCRIPTION                                |    8 +--
 MD5                                        |   77 ++++++++++++++++-------------
 NAMESPACE                                  |    3 -
 R/RcppExports.R                            |    8 +++
 R/description.R                            |   11 +++-
 R/minidesc.R                               |    2 
 R/object.R                                 |    3 -
 R/rd-file-api.R                            |    2 
 R/rd-tag-api.R                             |    9 +++
 R/roclet-collate.R                         |   15 +++--
 R/roclet-namespace.R                       |    2 
 R/roclet-rd.R                              |    6 +-
 R/safety.R                                 |    1 
 R/utils.R                                  |    2 
 build/vignette.rds                         |binary
 inst/doc/rd.Rmd                            |    8 ++-
 inst/doc/rd.html                           |    8 ++-
 man/is_s3_generic.Rd                       |    3 -
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 man/roxygenize.Rd                          |    3 -
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 vignettes/rd.Rmd                           |    8 ++-
 vignettes/rd.md                            |    8 ++-
 42 files changed, 235 insertions(+), 75 deletions(-)

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Package rgpui updated to version 0.1-2 with previous version 0.1-1 dated 2014-03-14

Title: UI for the RGP genetic programming framework
Description: RGP UI provides as modern web-based user interface to the modular Genetic Programming (GP) system RGP.
Author: Oliver Flasch
Maintainer: Oliver Flasch

Diff between rgpui versions 0.1-1 dated 2014-03-14 and 0.1-2 dated 2014-12-13

 DESCRIPTION                 |   10 
 MD5                         |   10 
 NAMESPACE                   |    3 
 R/webgui.R                  |    5 
 man/rgpuiHtml.Rd            | 1598 ++++++++++++++++++++++++--------------------
 man/symbolicRegressionUi.Rd |    9 
 6 files changed, 895 insertions(+), 740 deletions(-)

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New package mixor with initial version 1.0.1
Package: mixor
Type: Package
Title: Mixed-Effects Ordinal Regression Analysis
Version: 1.0.1
Date: 2014-12-12
Author: Donald Hedeker , Kellie J. Archer, Rachel Nordgren, Robert D. Gibbons
Maintainer: Kellie J. Archer
Description: Provides the function 'mixord' for fitting a mixed-effects ordinal and binary response models and associated methods for printing, summarizing, extracting estimated coefficients and variance-covariance matrix, and estimating contrasts for the fitted models.
License: GPL (>= 2)
Depends: R (>= 2.10)
Suggests: survival
BuildResaveData: best
Biarch: yes
NeedsCompilation: yes
LazyLoad: true
Packaged: 2014-11-12 00:26:45 UTC; kjarcher
Repository: CRAN
Date/Publication: 2014-12-13 08:02:46

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Package mixexp updated to version 1.1.9 with previous version 1.1.8 dated 2014-11-11

Title: Design and analysis of mixture experiments
Description: Functions for creating designs for mixture experiments, making ternary contour plots, and making mixture effect plots.
Author: John Lawson and Cameron Willden , with contributions from Greg Piepel
Maintainer: John Lawson

Diff between mixexp versions 1.1.8 dated 2014-11-11 and 1.1.9 dated 2014-12-13

 DESCRIPTION |   14 +++++++-------
 MD5         |    2 +-
 2 files changed, 8 insertions(+), 8 deletions(-)

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New package gemmR with initial version 1.3-2
Package: gemmR
Type: Package
Title: General Monotone Model
Version: 1.3-2
Date: 2014-09-08
Authors@R: c(person("Jeffrey", "Chrabaszcz", role = c("aut", "cre"), email = "jchrabaszcz@gmail.com"), person("Joe", "Tidwell", role = "aut"), person("Michael", "Dougherty", role = c("aut")))
LazyData: yes
Description: An R-language implementation of the General Monotone Model proposed by Michael Dougherty and Rick Thomas. It is a procedure for estimating weights for a set of independent predictors that minimize the rank-order inversions between the model predictions and some outcome.
License: GPL-3
Depends: Rcpp(>= 0.11), doMC(>= 1.3.1), foreach (>= 1.4.2)
Suggests: knitr
LinkingTo: Rcpp
VignetteBuilder: knitr
BugReports: https://github.com/jchrszcz/gemmR/issues
Collate: 'gemmquick.R' 'RcppExports.R'
Packaged: 2014-12-12 22:13:31 UTC; jchrszcz
Author: Jeffrey Chrabaszcz [aut, cre], Joe Tidwell [aut], Michael Dougherty [aut]
Maintainer: Jeffrey Chrabaszcz
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-13 08:02:40

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