Sat, 20 Dec 2014

New package SCEPtERbinary with initial version 0.1-1
Package: SCEPtERbinary
Title: Stellar CharactEristics Pisa Estimation gRid for Binary Systems
Version: 0.1-1
Date: 2014-04-12
Authors@R: c(person("Matteo", "Dell'Omodarme", role = c("aut", "cre"), email = "mattdell@fastmail.fm"), person("Giada", "Valle", role = "aut"))
Description: SCEPtER pipeline for estimating the stellar age for double-lined detached binary systems. The observational constraints adopted in the recovery are the effective temperature, the metallicity [Fe/H], the mass, and the radius of the two stars. The results are obtained adopting a maximum likelihood technique over a grid of pre-computed stellar models.
Suggests: lattice
Depends: R (>= 2.10), MASS, parallel, SCEPtER
LazyData: no
License: GPL (>= 2)
Maintainer: Matteo Dell'Omodarme
Packaged: 2014-12-20 14:36:03 UTC; matt
Author: Matteo Dell'Omodarme [aut, cre], Giada Valle [aut]
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-20 17:38:25

More information about SCEPtERbinary at CRAN
Permanent link

Package PKmodelFinder (with last version 1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2010-04-28 1.1

Permanent link
Package SCEPtERextras (with last version 0.1-0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-06-04 0.1-0

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Package RPublica updated to version 0.1.2 with previous version 0.1.1 dated 2014-05-09

Title: ProPublica API Client
Description: Client for accessing ProPublica's data journalism APIs
Author: Thomas J. Leeper [aut, cre], Jeroen Ooms [ctb]
Maintainer: Thomas J. Leeper

Diff between RPublica versions 0.1.1 dated 2014-05-09 and 0.1.2 dated 2014-12-20

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Package rnoaa updated to version 0.3.3 with previous version 0.2.0 dated 2014-07-21

Title: NOAA Climate Data from R
Description: An R client for many NOAA data sources including the NCDC climate API at http://www.ncdc.noaa.gov/cdo-web/webservices/v2, with functions for each of the API endpoints: data, data categories, data sets, data types, locations, location categories, and stations. In addition, we have an interface for NOAA sea ice data, the NOAA severe weather inventory, ERDDAP data, NOAA Historical Observing Metadata Repository (HOMR) data, NOAA storm data via IBTrACS, and tornado data via the NOAA storm prediction center. NOAA buoy data is only on the buoy branch in the Github repository for this package (see url below).
Author: Hart Edmund [aut], Scott Chamberlain [aut, cre], Karthik Ram [aut]
Maintainer: Scott Chamberlain

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Package RcmdrPlugin.ROC updated to version 1.0-17 with previous version 1.0-16 dated 2014-07-08

Title: Rcmdr Receiver Operator Characteristic Plug-In package
Description: Rcmdr GUI extension plug-in for Receiver Operator Characteristic tools from pROC and ROCR packages. Also it ads a Rcmdr GUI extension for Hosmer and Lemeshow GOF test from the package ResourceSelection.
Author: Daniel-Corneliu Leucuta [aut, cre], Mihaela Hedesiu [ctb], Andrei Achimas [ctb], Oana Almasan [ctb]
Maintainer: Daniel-Corneliu Leucuta

Diff between RcmdrPlugin.ROC versions 1.0-16 dated 2014-07-08 and 1.0-17 dated 2014-12-20

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Package pse updated to version 0.4.0 with previous version 0.3.4 dated 2014-06-17

Title: Parameter space exploration with Latin Hypercubes
Description: Functions for creating Latin Hypercubes with prescribed correlations and performing parameter space exploration. Also implements the PLUE method. Based on the package sensitivity, by Gilles Pujol, Bertrand Iooss & Alexandre Janon.
Author: Andre Chalom, Paulo Inacio Knegt Lopez de Prado
Maintainer: Andre Chalom

Diff between pse versions 0.3.4 dated 2014-06-17 and 0.4.0 dated 2014-12-20

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New package NORTARA with initial version 1.0.0
Package: NORTARA
Title: Generation of Multivariate Data with Arbitrary Marginals
Version: 1.0.0
Authors@R: person("Po", "Su", email = "desolator@sjtu.edu.cn", role = c("aut", "cre"))
Description: An implementation of a specific method for generating n-dimensional random vectors with given marginal distributions and correlation matrix. The method uses the NORTA (NORmal To Anything) approach which generates a standard normal random vector and then transforms it into a random vector with specified marginal distributions and the RA (Retrospective Approximation) algorithm which is a generic stochastic root-finding algorithm. The marginals can be continuous or discrete. See the vignette of package for more details.
URL: https://github.com/superdesolator/NORTARA
BugReports: https://github.com/superdesolator/NORTARA/issues
Depends: R (>= 3.1.2)
License: MIT + file LICENSE
LazyData: true
Imports: corpcor(>= 1.6.7), Matrix(>= 1.1-4)
Suggests: knitr
VignetteBuilder: knitr
Packaged: 2014-12-20 14:29:55 UTC; Administrator
Author: Po Su [aut, cre]
Maintainer: Po Su
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-20 15:46:33

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Package digest updated to version 0.6.7 with previous version 0.6.6 dated 2014-12-10

Title: Create Cryptographic Hash Digests of R Objects
Description: Implementation of a function 'digest()' for the creation of hash digests of arbitrary R objects (using the md5, sha-1, sha-256, crc32, xxhash and murmurhash algorithms) permitting easy comparison of R language objects, as well as a function 'hmac()' to create hash-based message authentication code. The md5 algorithm by Ron Rivest is specified in RFC 1321, the sha-1 and sha-256 algorithms are specified in FIPS-180-1 and FIPS-180-2, and the crc32 algorithm is described in ftp://ftp.rocksoft.com/cliens/rocksoft/papers/crc_v3.txt. For md5, sha-1, sha-256 and aes, this package uses a small standalone implementations that were provided by Christophe Devine. For crc32, code from the zlib library is used. For sha-512, an implementation by Aaron D. Gifford is used. For xxHash, the implementation by Yann Collet is used. For murmurhash, an implementation by Shane Day is used. Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as OpenSSL should be used.
Author: Dirk Eddelbuettel with contributions by Antoine Lucas, Jarek Tuszynski, Henrik Bengtsson, Simon Urbanek, Mario Frasca, Bryan Lewis, Murray Stokely, Hannes Muehleisen, Duncan Murdoch and Jim Hester.
Maintainer: Dirk Eddelbuettel

Diff between digest versions 0.6.6 dated 2014-12-10 and 0.6.7 dated 2014-12-20

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Package colourlovers updated to version 0.1.4 with previous version 0.1.3 dated 2014-08-06

Title: R client for the COLOURlovers API
Description: Provides access to the COLOURlovers API, which provides color inspiration and color palettes.
Author: Thomas J. Leeper
Maintainer: Thomas J. Leeper

Diff between colourlovers versions 0.1.3 dated 2014-08-06 and 0.1.4 dated 2014-12-20

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Package surveillance updated to version 1.8-2 with previous version 1.8-1 dated 2014-10-30

Title: Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena
Description: A package implementing statistical methods for the modeling and change-point detection in time series of counts, proportions and categorical data, as well as for the modeling of continuous-time epidemic phenomena, e.g. discrete-space setups such as the spatially enriched Susceptible-Exposed-Infectious-Recovered (SEIR) models for surveillance data, or continuous-space point process data such as the occurrence of disease or earthquakes. Main focus is on outbreak detection in count data time series originating from public health surveillance of infectious diseases, but applications could just as well originate from environmetrics, reliability engineering, econometrics or social sciences. Currently the package contains implementations of typical outbreak detection procedures such as Farrington et al (1996), Noufaily et al (2012) or the negative binomial LR-CUSUM method described in Hoehle and Paul (2008). Furthermore, inference methods for the retrospective infectious disease model in Held et al (2005), Held et al (2006), Paul et al (2008) and Paul and Held (2011) are provided. A novel CUSUM approach combining logistic and multinomial logistic modelling is also included. Continuous self-exciting spatio-temporal point processes are modeled through additive-multiplicative conditional intensities as described in Höhle (2009) ("twinSIR", discrete space) and Meyer et al (2012) ("twinstim", continuous space). The package contains several real-world data sets, the ability to simulate outbreak data, visualize the results of the monitoring in temporal, spatial or spatio-temporal fashion. Note: The suggested package INLA is unfortunately not available from any mainstream repository - in case one wants to use the 'boda' algorithm one needs to manually install the INLA package as specified at http://www.r-inla.org/download.
Author: Michael Höhle [aut, cre, ths], Sebastian Meyer [aut], Michaela Paul [aut], Leonhard Held [ctb, ths], Thais Correa [ctb], Mathias Hofmann [ctb], Christian Lang [ctb], Juliane Manitz [ctb], Andrea Riebler [ctb], Daniel Sabanés Bové [ctb], Maëlle Salmon [ctb], Dirk Schumacher [ctb], Stefan Steiner [ctb], Mikko Virtanen [ctb], Valentin Wimmer [ctb], R Core Team [ctb] (A few code segments are modified versions of code from base R)
Maintainer: Michael Höhle

Diff between surveillance versions 1.8-1 dated 2014-10-30 and 1.8-2 dated 2014-12-20

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Package splm updated to version 1.3-7 with previous version 1.1-0 dated 2013-07-02

Title: Econometric Models for Spatial Panel Data
Description: ML and GM estimation and diagnostic testing of econometric models for spatial panel data.
Author: Giovanni Millo [aut, cre], Gianfranco Piras [aut]
Maintainer: Giovanni Millo

Diff between splm versions 1.1-0 dated 2013-07-02 and 1.3-7 dated 2014-12-20

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Package npcp updated to version 0.1-1 with previous version 0.1-0 dated 2014-07-08

Title: Some nonparametric tests for change-point detection in (multivariate) observations
Description: Provides nonparametric tests for assessing whether possibly serially dependent (multivariate) observations have the same c.d.f. or not. In addition to tests focusing directly on the (multivariate) c.d.f., the package contains tests designed to be particularly sensitive to changes in the underlying copula, Spearman's rho or certain quantities that can be estimated using one-sample U-statistics of order two such as the variance, Gini's mean difference or Kendall's tau.
Author: Ivan Kojadinovic
Maintainer: Ivan Kojadinovic

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Package googleVis updated to version 0.5.7 with previous version 0.5.6 dated 2014-10-12

Title: R Interface to Google Charts
Description: R interface to Google Charts API, allowing users to create interactive charts based on data frames. Charts are displayed locally via the R HTTP help server. A modern browser with Internet connection is required and for some charts Flash. The data remains local and is not uploaded to Google.
Author: Markus Gesmann [aut, cre], Diego de Castillo [aut], Joe Cheng [ctb]
Maintainer: Markus Gesmann

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Package ChainLadder updated to version 0.1.9 with previous version 0.1.8 dated 2014-08-23

Title: Statistical Methods and Models for Claims Reserving in General Insurance
Description: Various statistical methods and models which are typically used for the estimation of outstanding claims reserves in general insurance. The package has implementations of the Mack, Munich, Bootstrap, multivariate, and chain-ladder factor models (CLFM), as well as the loss development factor curve fitting methods of Dave Clark and generalised linear model based reserving models.
Author: Markus Gesmann [aut, cre], Daniel Murphy [aut], Wayne Zhang [aut]
Maintainer: Markus Gesmann

Diff between ChainLadder versions 0.1.8 dated 2014-08-23 and 0.1.9 dated 2014-12-20

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Package RMAWGEN updated to version 1.3.0 with previous version 1.2.6.1 dated 2014-04-29

Title: Multi-site Auto-regressive Weather GENerator
Description: S3 and S4 functions are implemented for spatial multi-site stochastic generation of daily time series of temperature and precipitation. These tools make use of Vector AutoRegressive models (VARs). The weather generator model is then saved as an object and is calibrated by daily instrumental "Gaussianized" time series through the 'vars' package tools. Once obtained this model, it can it can be used for weather generations and be adapted to work with several climatic monthly time series.
Author: Emanuele Cordano, Emanuele Eccel
Maintainer: Emanuele Cordano

Diff between RMAWGEN versions 1.2.6.1 dated 2014-04-29 and 1.3.0 dated 2014-12-20

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Package pubmed.mineR updated to version 1.0.2.1 with previous version 1.0.2 dated 2014-08-26

Title: Text mining of PubMed Abstracts
Description: Text mining of PubMed Abstracts (http://www.ncbi.nlm.nih.gov/pubmed). The algorithms are designed for two formats (text and XML) from PubMed
Author: Jyoti Sharma, S.Ramachandran, Ab Rauf Shah
Maintainer: S. Ramachandran

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Package tcltk2 updated to version 1.2-11 with previous version 1.2-10 dated 2014-03-02

Title: Tcl/Tk Additions
Description: A series of additional Tcl commands and Tk widgets with style and various functions (under Windows: DDE exchange, access to the registry and icon manipulation) to supplement the tcltk package
Author: Philippe Grosjean [aut, cre]
Maintainer: Philippe Grosjean

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Package svDialogs updated to version 0.9-57 with previous version 0.9-55 dated 2014-03-02

Title: SciViews GUI API - Dialog boxes
Description: Rapidly construct dialog boxes for your GUI, including an automatic function assistant
Author: Philippe Grosjean [aut, cre]
Maintainer: Philippe Grosjean

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Package ddalpha updated to version 1.1.0 with previous version 1.0.6 dated 2014-03-28

Title: Depth-based Classification and Calculation of Data Depth
Description: Contains procedures for depth-based supervised learning, which are entirely nonparametric, in particular the DDalpha-procedure. The training data sample is transformed by a statistical depth function to a compact low-dimensional space, where the final classification is done. It also offers an extension to functional data and routines for calculating certain notions of statistical depth functions. 50 multivariate and 5 functional classification problems are included.
Author: Oleksii Pokotylo [aut, cre], Pavlo Mozharovskyi [aut]
Maintainer: Oleksii Pokotylo

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 ddalpha-1.1.0/ddalpha/src/TukeyDepth.cpp             |   19 
 ddalpha-1.1.0/ddalpha/src/TukeyDepth.h               |    4 
 ddalpha-1.1.0/ddalpha/src/ZonoidDepth.cpp            |   18 
 ddalpha-1.1.0/ddalpha/src/ZonoidDepth.h              |   12 
 ddalpha-1.1.0/ddalpha/src/ddalpha.cpp                |   61 +-
 ddalpha-1.1.0/ddalpha/src/stdafx.cpp                 |    6 
 ddalpha-1.1.0/ddalpha/src/stdafx.h                   |   17 
 74 files changed, 966 insertions(+), 799 deletions(-)

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Package gdsfmt (with last version 1.1.0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-09-19 1.1.0.1
2014-09-11 1.1.0

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Package HIBAG (with last version 1.2.4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-10-03 1.2.4
2014-03-06 1.2.3
2013-12-21 1.2.2
2013-10-30 1.2.1
2013-08-12 1.2.0.1
2013-07-29 1.2.0
2013-06-04 1.1.0
2013-03-26 1.0.0
2012-12-22 0.9.4
2012-10-20 0.9.3
2012-08-05 0.9.2
2012-06-21 0.9.1

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Package testit updated to version 0.4 with previous version 0.3 dated 2013-10-26

Title: A Simple Package for Testing R Packages
Description: Provides two convenience functions assert() and test_pkg() to facilitate testing R packages.
Author: Yihui Xie
Maintainer: Yihui Xie

Diff between testit versions 0.3 dated 2013-10-26 and 0.4 dated 2014-12-20

 DESCRIPTION        |   14 +++++++-------
 MD5                |   16 ++++++++--------
 NEWS               |    7 +++++++
 R/testit.R         |   28 ++++++++++++++++------------
 R/utils.R          |    5 +++++
 README.md          |   28 ++++++++++++++++------------
 man/assert.Rd      |   45 ++++++++++++++++++++++-----------------------
 man/has_message.Rd |   10 +++++-----
 man/test_pkg.Rd    |   49 +++++++++++++++++++++----------------------------
 9 files changed, 107 insertions(+), 95 deletions(-)

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New package orgR with initial version 0.9.0
Package: orgR
Type: Package
Title: Analyse Text Files Created by Emacs' Org mode
Version: 0.9.0
Date: 2014-12-15
Author: Yi Tang
Maintainer: Yi Tang
Description: Provides functionality to process text files created by Emacs' Org mode, and decompose the content to the smallest components (headlines, body, tag, clock entries etc). Emacs is an extensible, customizable text editor and Org mode is for keeping notes, maintaining TODO lists, planning projects. Allows users to analyze org files as data frames in R, e.g., to convieniently group tasks by tag into project and calculate total working hours. Also provides some help functions like search.parent, gg.pie (visualise working hours in ggplot2) and tree.headlines (visualise headline stricture in tree format) to help user managing their complex org files.
License: GPL (>= 2)
Depends: ggthemes (>= 1.7.0), ggplot2 (>= 1.0.0), lubridate(>= 1.3.3), data.table (>= 1.9.4), stringr (>= 0.6.2)
Packaged: 2014-12-19 15:02:11.908 UTC; yitang
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-20 07:48:40

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Package knockoff updated to version 0.1.1 with previous version 0.1 dated 2014-12-06

Title: Knockoff Filter
Description: The knockoff filter for controlling the false discovery rate
Author: Rina Foygel Barber, Emmanuel Candes, Evan Patterson
Maintainer: Evan Patterson

Diff between knockoff versions 0.1 dated 2014-12-06 and 0.1.1 dated 2014-12-20

 DESCRIPTION              |    8 ++++----
 MD5                      |   24 ++++++++++++++----------
 R/create.R               |   18 ++++++++++++++++--
 R/knockoff.R             |    7 ++++++-
 build/vignette.rds       |binary
 inst/doc/intro.Rmd       |    1 -
 inst/doc/intro.html      |    6 ++----
 inst/doc/sdp.R           |only
 inst/doc/sdp.Rmd         |only
 inst/doc/sdp.html        |only
 inst/python/solve_sdp.py |   13 ++++++++++---
 man/knockoff.create.Rd   |    6 ++++++
 man/knockoff.filter.Rd   |    5 +++++
 vignettes/intro.Rmd      |    1 -
 vignettes/sdp.Rmd        |only
 15 files changed, 63 insertions(+), 26 deletions(-)

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Package doMPI updated to version 0.2.1 with previous version 0.2 dated 2013-06-14

Title: Foreach parallel adaptor for the Rmpi package
Description: Provides a parallel backend for the %dopar% function using the Rmpi package.
Author: Steve Weston
Maintainer: Steve Weston

Diff between doMPI versions 0.2 dated 2013-06-14 and 0.2.1 dated 2014-12-20

 doMPI-0.2.1/doMPI/DESCRIPTION           |    6 +++---
 doMPI-0.2.1/doMPI/MD5                   |   17 +++++++++--------
 doMPI-0.2.1/doMPI/NAMESPACE             |    1 +
 doMPI-0.2.1/doMPI/NEWS                  |    7 +++++--
 doMPI-0.2.1/doMPI/R/doMPI.R             |    5 ++++-
 doMPI-0.2.1/doMPI/R/exportDoMPI.R       |    3 ---
 doMPI-0.2.1/doMPI/R/mpiworkers.R        |    8 +-------
 doMPI-0.2.1/doMPI/build                 |only
 doMPI-0.2.1/doMPI/inst/doc/doMPI.pdf    |binary
 doMPI-0.2.1/doMPI/inst/examples/iplot.R |only
 doMPI-0.2/doMPI/test                    |only
 11 files changed, 23 insertions(+), 24 deletions(-)

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